2026-06-29T17:34:21,000 Created temporary directory: /tmp/pip-ephem-wheel-cache-vuvjhkhl
2026-06-29T17:34:21,002 Created temporary directory: /tmp/pip-build-tracker-6occ8fbc
2026-06-29T17:34:21,002 Initialized build tracking at /tmp/pip-build-tracker-6occ8fbc
2026-06-29T17:34:21,003 Created build tracker: /tmp/pip-build-tracker-6occ8fbc
2026-06-29T17:34:21,003 Entered build tracker: /tmp/pip-build-tracker-6occ8fbc
2026-06-29T17:34:21,004 Created temporary directory: /tmp/pip-wheel-5oxupikf
2026-06-29T17:34:21,007 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-29T17:34:21,009 Created temporary directory: /tmp/pip-ephem-wheel-cache-xczikapr
2026-06-29T17:34:21,031 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-29T17:34:21,034 2 location(s) to search for versions of oncoref:
2026-06-29T17:34:21,034 * https://pypi.org/simple/oncoref/
2026-06-29T17:34:21,034 * https://www.piwheels.org/simple/oncoref/
2026-06-29T17:34:21,035 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/
2026-06-29T17:34:21,036 Getting page https://pypi.org/simple/oncoref/
2026-06-29T17:34:21,037 Found index url https://pypi.org/simple
2026-06-29T17:34:21,364 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json
2026-06-29T17:34:21,374   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,376   Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0
2026-06-29T17:34:21,376   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,377   Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0
2026-06-29T17:34:21,378   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,379   Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0
2026-06-29T17:34:21,380   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,381   Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1
2026-06-29T17:34:21,381   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,382   Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2
2026-06-29T17:34:21,383   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,384   Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3
2026-06-29T17:34:21,385   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,386   Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4
2026-06-29T17:34:21,387   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,387   Found link https://files.pythonhosted.org/packages/0a/e2/de65c5e1582fe009b3f640e94e6ecd5cf2f139d490750374cdad3af0e14c/oncoref-1.8.5.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.5
2026-06-29T17:34:21,388   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/71/92/3cd4d589831ccb90b12732347718e54d84097a6c780ced1810f52e3b302a/oncoref-1.8.6-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,389   Found link https://files.pythonhosted.org/packages/fe/29/0640ff92bcb51841b69a4d04ccf94a5173a18ee10c54786b959026ca4362/oncoref-1.8.6.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.6
2026-06-29T17:34:21,390   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f2/29/f869b37c956b8836b9c9b45e89ab7dad98a93270e6bd395b45a7ca5657ad/oncoref-1.8.7-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,391   Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7
2026-06-29T17:34:21,391   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,392   Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8
2026-06-29T17:34:21,393   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,394   Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9
2026-06-29T17:34:21,395   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,396   Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10
2026-06-29T17:34:21,397   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,397   Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11
2026-06-29T17:34:21,398   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,399   Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12
2026-06-29T17:34:21,399   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,400   Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13
2026-06-29T17:34:21,401   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2f/c1/703bd890ae830651eae083a090278ba8254ac89bae1c0bfefed061c3e2eb/oncoref-1.8.14-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,401   Found link https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.14
2026-06-29T17:34:21,402   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ac/42/91b2b04455fb29d40afb47dc7ee2eae30218a24c4d540d95191d31f6f98e/oncoref-1.8.15-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,403   Found link https://files.pythonhosted.org/packages/26/8a/9cb4754077d37b89ed3ee3781cffdb03040d90286aaaedacba8cb238d7c3/oncoref-1.8.15.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.15
2026-06-29T17:34:21,404   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/3f/1af50bb6d208ada32a29b7e3ed29169932b97542b48e765c1d96130b7f3d/oncoref-1.8.16-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,405   Found link https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.16
2026-06-29T17:34:21,406   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/77/d24a0f29e452b83e5d6a1bfb366c72b8407bc7505d94280ca3ba609de07e/oncoref-1.8.17-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,406   Found link https://files.pythonhosted.org/packages/c1/e7/7f753f3a4b044b3f3bc8f75b75ef24df1c9b77d3f0742ee37fc243441830/oncoref-1.8.17.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.17
2026-06-29T17:34:21,407   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/04/55/5f2c1936263bdbe9a95a7c82d673eae8724b3eb1b99d4c1c33eadfc6edf5/oncoref-1.8.18-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,408   Found link https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.18
2026-06-29T17:34:21,409   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/07/35/638b350ebd4fd975c88adb9168c250b482cf549a77381cced479cdf3923f/oncoref-1.8.19-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,410   Found link https://files.pythonhosted.org/packages/39/5a/c1460247c124e495fc20ae3e76a760ee67da5f7263531a1093ae4cdc1983/oncoref-1.8.19.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.19
2026-06-29T17:34:21,410   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/eb/2d/584fe29a9ae1a336ec8dc1dadc08e60e036de296b703c428b69aafb97ee7/oncoref-1.8.20-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,411   Found link https://files.pythonhosted.org/packages/aa/5b/9be05673420aae6512388fb70ff3b3802ca0bca46179299c93e9bdea7cb1/oncoref-1.8.20.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.20
2026-06-29T17:34:21,412   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/c2/b8/d13577ba1cd9a054203201a66d94d70c8c71156e5afaf85c557c52a8a4c8/oncoref-1.8.21-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,413   Found link https://files.pythonhosted.org/packages/f6/9d/ca143333eade742f336f48670b06ee9849c2c31d9322c5c7bb6979a191a3/oncoref-1.8.21.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.21
2026-06-29T17:34:21,413   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/59/bd/c385a7916a14b417f607eecb73034e821165e8f650435947ecf8845c5161/oncoref-1.8.22-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,414   Found link https://files.pythonhosted.org/packages/a7/cc/f9b0c987a30c7928b99e165f2bd778a677eb1433eb0802911d6678139aeb/oncoref-1.8.22.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.22
2026-06-29T17:34:21,415   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/e7/f2/ae5d03f1bf678a753916310b281effcbc4cf19a4e0e6995437966ad6ac91/oncoref-1.8.23-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,416   Found link https://files.pythonhosted.org/packages/be/8c/f6a66a8ae2ba39778734de5548a77246995f30c636670ff2ca38094ff59e/oncoref-1.8.23.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.23
2026-06-29T17:34:21,416   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/8d/ca3b2c8c719845b8c38ff91118723bb2c965155ac0a49af2ff8ceff50a56/oncoref-1.8.24-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,417   Found link https://files.pythonhosted.org/packages/62/f6/e9a386e5a93bd80d065addcc4050fefd3bb6e8b55b75ea3ba88025f95255/oncoref-1.8.24.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.24
2026-06-29T17:34:21,418   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/8d/48/dd730548afc982ad049e59c8084f8847a0c49e3d0e288d7b0c299abdad9b/oncoref-1.8.25-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,419   Found link https://files.pythonhosted.org/packages/fe/48/42ff82844f2c14e04799c0441651a2c9b147da3707e4924129d0352b5525/oncoref-1.8.25.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.25
2026-06-29T17:34:21,420 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/
2026-06-29T17:34:21,420 Getting page https://www.piwheels.org/simple/oncoref/
2026-06-29T17:34:21,422 Found index url https://www.piwheels.org/simple
2026-06-29T17:34:21,839 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html
2026-06-29T17:34:21,848   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.22-py3-none-any.whl#sha256=f9f6af90f23f91ed83e606231a0b8288143792f632998acf8e42adb9b41fa572 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,848   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.21-py3-none-any.whl#sha256=ac7131b0f8f46c73d142fc08042a64e251ad3df564bfc62308d462affc18f008 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,849   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.20-py3-none-any.whl#sha256=02858d3770dc0077ec2663efc1ab8ae19e982b234caa93e7035f95670b0d174e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
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2026-06-29T17:34:21,852   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.15-py3-none-any.whl#sha256=4dcd40c2e5c10b8f8be0d8df8489b5f05153d465eb43ddf7f9dc158bbe6b1de3 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,853   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.14-py3-none-any.whl#sha256=ac41cf84ca97c695a15f40326738750e2762e39f366bf99300777803874b26da (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
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2026-06-29T17:34:21,857   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.8-py3-none-any.whl#sha256=f1b7351039ce534abc9d36a03b53fd9479b1629b4a6fd8698bc500162f1cd362 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
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2026-06-29T17:34:21,858   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.6-py3-none-any.whl#sha256=460f281fc846e410a5992e3a87193febdfac8bf81f3e5497a5e5d72ae58176bf (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,859   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.5-py3-none-any.whl#sha256=cfedb20aa2c2593dfb010bc01a13d5b6c732ec5cf013fd70b65c71d1adb71f7e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,859   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,860   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,860   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,861   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,861   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,862   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,863   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:34:21,863 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/
2026-06-29T17:34:21,864 Skipping link: not a file: https://pypi.org/simple/oncoref/
2026-06-29T17:34:21,888 Given no hashes to check 1 links for project 'oncoref': discarding no candidates
2026-06-29T17:34:21,907 Collecting oncoref==1.8.23
2026-06-29T17:34:21,911   Created temporary directory: /tmp/pip-unpack-5mwe9de5
2026-06-29T17:34:22,240   Downloading oncoref-1.8.23.tar.gz (1.7 MB)
2026-06-29T17:34:23,222   Added oncoref==1.8.23 from https://files.pythonhosted.org/packages/be/8c/f6a66a8ae2ba39778734de5548a77246995f30c636670ff2ca38094ff59e/oncoref-1.8.23.tar.gz to build tracker '/tmp/pip-build-tracker-6occ8fbc'
2026-06-29T17:34:23,229   Created temporary directory: /tmp/pip-build-env-3l4w0ms9
2026-06-29T17:34:23,234   Installing build dependencies: started
2026-06-29T17:34:23,235   Running command pip subprocess to install build dependencies
2026-06-29T17:34:24,399   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-06-29T17:34:24,864   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-29T17:34:24,887   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-29T17:34:26,883   Collecting setuptools>=61.0
2026-06-29T17:34:26,884     Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-06-29T17:34:26,899     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-06-29T17:34:27,131   Collecting wheel
2026-06-29T17:34:27,132     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-06-29T17:34:27,146     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-06-29T17:34:27,330   Collecting packaging>=24.0
2026-06-29T17:34:27,331     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-06-29T17:34:27,345     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-06-29T17:34:27,536   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-29T17:34:27,557   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-29T17:34:27,644   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-29T17:34:27,684   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-29T17:34:27,710   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-29T17:34:27,802   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-29T17:34:30,577   Installing collected packages: setuptools, packaging, wheel
2026-06-29T17:34:34,271     Creating /tmp/pip-build-env-3l4w0ms9/overlay/local/bin
2026-06-29T17:34:34,273     changing mode of /tmp/pip-build-env-3l4w0ms9/overlay/local/bin/wheel to 755
2026-06-29T17:34:34,293   Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0
2026-06-29T17:34:34,581   Installing build dependencies: finished with status 'done'
2026-06-29T17:34:34,588   Getting requirements to build wheel: started
2026-06-29T17:34:34,589   Running command Getting requirements to build wheel
2026-06-29T17:34:35,263   running egg_info
2026-06-29T17:34:35,268   writing oncoref.egg-info/PKG-INFO
2026-06-29T17:34:35,274   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-29T17:34:35,276   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-29T17:34:35,279   writing requirements to oncoref.egg-info/requires.txt
2026-06-29T17:34:35,280   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-29T17:34:35,314   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T17:34:35,323   reading manifest template 'MANIFEST.in'
2026-06-29T17:34:35,325   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T17:34:35,326   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T17:34:35,327   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T17:34:35,329   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T17:34:35,329   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T17:34:35,330   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T17:34:35,331   adding license file 'LICENSE'
2026-06-29T17:34:35,339   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T17:34:35,437   Getting requirements to build wheel: finished with status 'done'
2026-06-29T17:34:35,441   Created temporary directory: /tmp/pip-modern-metadata-26gzv8v_
2026-06-29T17:34:35,443   Preparing metadata (pyproject.toml): started
2026-06-29T17:34:35,444   Running command Preparing metadata (pyproject.toml)
2026-06-29T17:34:36,095   running dist_info
2026-06-29T17:34:36,105   creating /tmp/pip-modern-metadata-26gzv8v_/oncoref.egg-info
2026-06-29T17:34:36,106   writing /tmp/pip-modern-metadata-26gzv8v_/oncoref.egg-info/PKG-INFO
2026-06-29T17:34:36,112   writing dependency_links to /tmp/pip-modern-metadata-26gzv8v_/oncoref.egg-info/dependency_links.txt
2026-06-29T17:34:36,113   writing entry points to /tmp/pip-modern-metadata-26gzv8v_/oncoref.egg-info/entry_points.txt
2026-06-29T17:34:36,116   writing requirements to /tmp/pip-modern-metadata-26gzv8v_/oncoref.egg-info/requires.txt
2026-06-29T17:34:36,117   writing top-level names to /tmp/pip-modern-metadata-26gzv8v_/oncoref.egg-info/top_level.txt
2026-06-29T17:34:36,118   writing manifest file '/tmp/pip-modern-metadata-26gzv8v_/oncoref.egg-info/SOURCES.txt'
2026-06-29T17:34:36,151   reading manifest file '/tmp/pip-modern-metadata-26gzv8v_/oncoref.egg-info/SOURCES.txt'
2026-06-29T17:34:36,152   reading manifest template 'MANIFEST.in'
2026-06-29T17:34:36,154   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T17:34:36,155   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T17:34:36,156   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T17:34:36,157   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T17:34:36,158   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T17:34:36,159   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T17:34:36,159   adding license file 'LICENSE'
2026-06-29T17:34:36,166   writing manifest file '/tmp/pip-modern-metadata-26gzv8v_/oncoref.egg-info/SOURCES.txt'
2026-06-29T17:34:36,167   creating '/tmp/pip-modern-metadata-26gzv8v_/oncoref-1.8.23.dist-info'
2026-06-29T17:34:36,294   Preparing metadata (pyproject.toml): finished with status 'done'
2026-06-29T17:34:36,299   Source in /tmp/pip-wheel-5oxupikf/oncoref_14455448a3614f8db5d682333a80a816 has version 1.8.23, which satisfies requirement oncoref==1.8.23 from https://files.pythonhosted.org/packages/be/8c/f6a66a8ae2ba39778734de5548a77246995f30c636670ff2ca38094ff59e/oncoref-1.8.23.tar.gz
2026-06-29T17:34:36,300   Removed oncoref==1.8.23 from https://files.pythonhosted.org/packages/be/8c/f6a66a8ae2ba39778734de5548a77246995f30c636670ff2ca38094ff59e/oncoref-1.8.23.tar.gz from build tracker '/tmp/pip-build-tracker-6occ8fbc'
2026-06-29T17:34:36,306 Created temporary directory: /tmp/pip-unpack-y2ddyuc5
2026-06-29T17:34:36,307 Building wheels for collected packages: oncoref
2026-06-29T17:34:36,311   Created temporary directory: /tmp/pip-wheel-qnel1kly
2026-06-29T17:34:36,312   Destination directory: /tmp/pip-wheel-qnel1kly
2026-06-29T17:34:36,314   Building wheel for oncoref (pyproject.toml): started
2026-06-29T17:34:36,315   Running command Building wheel for oncoref (pyproject.toml)
2026-06-29T17:34:36,941   running bdist_wheel
2026-06-29T17:34:36,960   running build
2026-06-29T17:34:36,961   running build_py
2026-06-29T17:34:36,968   creating build/lib/oncoref
2026-06-29T17:34:36,970   copying oncoref/expression.py -> build/lib/oncoref
2026-06-29T17:34:36,974   copying oncoref/cta_coverage.py -> build/lib/oncoref
2026-06-29T17:34:36,976   copying oncoref/antigen_coverage.py -> build/lib/oncoref
2026-06-29T17:34:36,978   copying oncoref/cli.py -> build/lib/oncoref
2026-06-29T17:34:36,981   copying oncoref/catalog.py -> build/lib/oncoref
2026-06-29T17:34:36,983   copying oncoref/cta_curation_plots.py -> build/lib/oncoref
2026-06-29T17:34:36,986   copying oncoref/response_signatures.py -> build/lib/oncoref
2026-06-29T17:34:36,988   copying oncoref/gene_qc.py -> build/lib/oncoref
2026-06-29T17:34:36,990   copying oncoref/cancer_ontology.py -> build/lib/oncoref
2026-06-29T17:34:36,992   copying oncoref/coverage.py -> build/lib/oncoref
2026-06-29T17:34:36,995   copying oncoref/samples.py -> build/lib/oncoref
2026-06-29T17:34:36,997   copying oncoref/expression_engine.py -> build/lib/oncoref
2026-06-29T17:34:37,000   copying oncoref/cohorts.py -> build/lib/oncoref
2026-06-29T17:34:37,002   copying oncoref/tmb.py -> build/lib/oncoref
2026-06-29T17:34:37,004   copying oncoref/plots.py -> build/lib/oncoref
2026-06-29T17:34:37,007   copying oncoref/genome.py -> build/lib/oncoref
2026-06-29T17:34:37,009   copying oncoref/expression_builders.py -> build/lib/oncoref
2026-06-29T17:34:37,012   copying oncoref/gene_families.py -> build/lib/oncoref
2026-06-29T17:34:37,014   copying oncoref/proteoforms.py -> build/lib/oncoref
2026-06-29T17:34:37,017   copying oncoref/cta_tissues.py -> build/lib/oncoref
2026-06-29T17:34:37,019   copying oncoref/load_dataset.py -> build/lib/oncoref
2026-06-29T17:34:37,021   copying oncoref/incidence.py -> build/lib/oncoref
2026-06-29T17:34:37,024   copying oncoref/fusions.py -> build/lib/oncoref
2026-06-29T17:34:37,026   copying oncoref/cancer_genes.py -> build/lib/oncoref
2026-06-29T17:34:37,028   copying oncoref/data_bundle.py -> build/lib/oncoref
2026-06-29T17:34:37,030   copying oncoref/apd1.py -> build/lib/oncoref
2026-06-29T17:34:37,032   copying oncoref/cta_peptides.py -> build/lib/oncoref
2026-06-29T17:34:37,034   copying oncoref/cancer_types.py -> build/lib/oncoref
2026-06-29T17:34:37,038   copying oncoref/cta_regen.py -> build/lib/oncoref
2026-06-29T17:34:37,040   copying oncoref/data_manifest.py -> build/lib/oncoref
2026-06-29T17:34:37,042   copying oncoref/peptides.py -> build/lib/oncoref
2026-06-29T17:34:37,045   copying oncoref/__init__.py -> build/lib/oncoref
2026-06-29T17:34:37,047   copying oncoref/gene_ids.py -> build/lib/oncoref
2026-06-29T17:34:37,050   copying oncoref/ici_response.py -> build/lib/oncoref
2026-06-29T17:34:37,052   copying oncoref/hpa.py -> build/lib/oncoref
2026-06-29T17:34:37,054   copying oncoref/expression_registry.py -> build/lib/oncoref
2026-06-29T17:34:37,057   copying oncoref/cta.py -> build/lib/oncoref
2026-06-29T17:34:37,059   copying oncoref/reference_data.py -> build/lib/oncoref
2026-06-29T17:34:37,062   copying oncoref/source_matrices.py -> build/lib/oncoref
2026-06-29T17:34:37,064   copying oncoref/version.py -> build/lib/oncoref
2026-06-29T17:34:37,066   copying oncoref/ici.py -> build/lib/oncoref
2026-06-29T17:34:37,069   copying oncoref/normalization.py -> build/lib/oncoref
2026-06-29T17:34:37,083   creating build/lib/oncoref/data
2026-06-29T17:34:37,085   copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,088   copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,094   copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,098   copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,101   copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,104   copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,106   copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,110   copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,113   copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,115   copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,118   copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,124   copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,127   copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,130   copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,133   copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,135   copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,138   copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,140   copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,143   copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,153   copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,156   copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,159   copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,163   copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,165   copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,169   copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,172   copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,175   copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,177   copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,180   copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,183   copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,186   copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,192   copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,195   copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,198   copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,200   copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,203   copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,207   copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,209   copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,215   copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,218   copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,221   copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,224   copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,227   copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,230   copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,232   copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,235   copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,238   copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,241   copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,244   copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,249   copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,252   copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,254   copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,258   copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data
2026-06-29T17:34:37,261   copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data
2026-06-29T17:34:37,274   copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data
2026-06-29T17:34:37,286   copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data
2026-06-29T17:34:37,294   copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data
2026-06-29T17:34:37,309   installing to build/bdist.linux-armv7l/wheel
2026-06-29T17:34:37,309   running install
2026-06-29T17:34:37,332   running install_lib
2026-06-29T17:34:37,338   creating build/bdist.linux-armv7l/wheel
2026-06-29T17:34:37,341   creating build/bdist.linux-armv7l/wheel/oncoref
2026-06-29T17:34:37,343   copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,346   copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,348   copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,350   copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,353   copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,355   copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,357   copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,359   copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,362   copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,364   copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,366   copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,368   copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,371   copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,373   copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,375   copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,378   copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,381   copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,383   copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,386   copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,388   copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,391   copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,393   copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,396   copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,398   copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,400   copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,403   copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,405   copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,407   copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,410   copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,414   creating build/bdist.linux-armv7l/wheel/oncoref/data
2026-06-29T17:34:37,415   copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,418   copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,424   copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,427   copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,429   copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,431   copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,433   copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,436   copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,438   copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,439   copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,442   copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,446   copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,449   copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,451   copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,453   copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,454   copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,456   copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,458   copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,460   copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,468   copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,470   copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,473   copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,476   copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,479   copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,481   copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,484   copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,487   copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,488   copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,499   copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,501   copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,503   copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,505   copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,507   copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,513   copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,515   copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,517   copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,519   copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,532   copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,534   copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,537   copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,539   copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,545   copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,548   copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,550   copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,552   copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,555   copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,557   copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,559   copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,561   copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,564   copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,566   copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,568   copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,574   copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,576   copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,578   copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,582   copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,592   copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:34:37,595   copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,598   copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,600   copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,603   copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,605   copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,607   copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,609   copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,612   copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,614   copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,616   copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,619   copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,620   copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,623   copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:34:37,626   running install_egg_info
2026-06-29T17:34:37,635   running egg_info
2026-06-29T17:34:37,640   writing oncoref.egg-info/PKG-INFO
2026-06-29T17:34:37,646   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-29T17:34:37,647   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-29T17:34:37,650   writing requirements to oncoref.egg-info/requires.txt
2026-06-29T17:34:37,651   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-29T17:34:37,670   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T17:34:37,679   reading manifest template 'MANIFEST.in'
2026-06-29T17:34:37,681   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T17:34:37,682   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T17:34:37,684   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T17:34:37,685   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T17:34:37,686   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T17:34:37,687   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T17:34:37,688   adding license file 'LICENSE'
2026-06-29T17:34:37,696   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T17:34:37,698   Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.23-py3.11.egg-info
2026-06-29T17:34:37,711   running install_scripts
2026-06-29T17:34:37,725   creating build/bdist.linux-armv7l/wheel/oncoref-1.8.23.dist-info/WHEEL
2026-06-29T17:34:37,728   creating '/tmp/pip-wheel-qnel1kly/.tmp-zxt_j870/oncoref-1.8.23-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-29T17:34:37,732   adding 'oncoref/__init__.py'
2026-06-29T17:34:37,733   adding 'oncoref/antigen_coverage.py'
2026-06-29T17:34:37,735   adding 'oncoref/apd1.py'
2026-06-29T17:34:37,737   adding 'oncoref/cancer_genes.py'
2026-06-29T17:34:37,738   adding 'oncoref/cancer_ontology.py'
2026-06-29T17:34:37,746   adding 'oncoref/cancer_types.py'
2026-06-29T17:34:37,748   adding 'oncoref/catalog.py'
2026-06-29T17:34:37,752   adding 'oncoref/cli.py'
2026-06-29T17:34:37,753   adding 'oncoref/cohorts.py'
2026-06-29T17:34:37,757   adding 'oncoref/coverage.py'
2026-06-29T17:34:37,760   adding 'oncoref/cta.py'
2026-06-29T17:34:37,761   adding 'oncoref/cta_coverage.py'
2026-06-29T17:34:37,763   adding 'oncoref/cta_curation_plots.py'
2026-06-29T17:34:37,765   adding 'oncoref/cta_peptides.py'
2026-06-29T17:34:37,768   adding 'oncoref/cta_regen.py'
2026-06-29T17:34:37,769   adding 'oncoref/cta_tissues.py'
2026-06-29T17:34:37,773   adding 'oncoref/data_bundle.py'
2026-06-29T17:34:37,775   adding 'oncoref/data_manifest.py'
2026-06-29T17:34:37,786   adding 'oncoref/expression.py'
2026-06-29T17:34:37,789   adding 'oncoref/expression_builders.py'
2026-06-29T17:34:37,792   adding 'oncoref/expression_engine.py'
2026-06-29T17:34:37,794   adding 'oncoref/expression_registry.py'
2026-06-29T17:34:37,796   adding 'oncoref/fusions.py'
2026-06-29T17:34:37,798   adding 'oncoref/gene_families.py'
2026-06-29T17:34:37,800   adding 'oncoref/gene_ids.py'
2026-06-29T17:34:37,802   adding 'oncoref/gene_qc.py'
2026-06-29T17:34:37,804   adding 'oncoref/genome.py'
2026-06-29T17:34:37,806   adding 'oncoref/hpa.py'
2026-06-29T17:34:37,810   adding 'oncoref/ici.py'
2026-06-29T17:34:37,812   adding 'oncoref/ici_response.py'
2026-06-29T17:34:37,814   adding 'oncoref/incidence.py'
2026-06-29T17:34:37,816   adding 'oncoref/load_dataset.py'
2026-06-29T17:34:37,820   adding 'oncoref/normalization.py'
2026-06-29T17:34:37,822   adding 'oncoref/peptides.py'
2026-06-29T17:34:37,829   adding 'oncoref/plots.py'
2026-06-29T17:34:37,832   adding 'oncoref/proteoforms.py'
2026-06-29T17:34:37,834   adding 'oncoref/reference_data.py'
2026-06-29T17:34:37,836   adding 'oncoref/response_signatures.py'
2026-06-29T17:34:37,837   adding 'oncoref/samples.py'
2026-06-29T17:34:37,839   adding 'oncoref/source_matrices.py'
2026-06-29T17:34:37,840   adding 'oncoref/tmb.py'
2026-06-29T17:34:37,841   adding 'oncoref/version.py'
2026-06-29T17:34:37,845   adding 'oncoref/data/cancer-apd1-response.csv'
2026-06-29T17:34:37,847   adding 'oncoref/data/cancer-code-burden-map.csv'
2026-06-29T17:34:37,848   adding 'oncoref/data/cancer-cohort-aggregates.csv'
2026-06-29T17:34:37,853   adding 'oncoref/data/cancer-driver-genes.csv'
2026-06-29T17:34:37,855   adding 'oncoref/data/cancer-driver-variants.csv'
2026-06-29T17:34:37,858   adding 'oncoref/data/cancer-expression-source-candidates.csv'
2026-06-29T17:34:37,859   adding 'oncoref/data/cancer-frameshift-burden.csv'
2026-06-29T17:34:37,862   adding 'oncoref/data/cancer-fusions.csv'
2026-06-29T17:34:37,880   adding 'oncoref/data/cancer-ici-response-estimates.csv'
2026-06-29T17:34:37,884   adding 'oncoref/data/cancer-ici-response.csv'
2026-06-29T17:34:37,886   adding 'oncoref/data/cancer-incidence-mortality.csv'
2026-06-29T17:34:37,900   adding 'oncoref/data/cancer-key-genes.csv'
2026-06-29T17:34:37,902   adding 'oncoref/data/cancer-lineage-group-overrides.csv'
2026-06-29T17:34:37,904   adding 'oncoref/data/cancer-lineage-groups.csv'
2026-06-29T17:34:37,905   adding 'oncoref/data/cancer-normal-tissue-map.csv'
2026-06-29T17:34:37,934   adding 'oncoref/data/cancer-reference-expression-samples.csv.gz'
2026-06-29T17:34:37,937   adding 'oncoref/data/cancer-response-signatures.csv'
2026-06-29T17:34:37,939   adding 'oncoref/data/cancer-subtype-groupings.csv'
2026-06-29T17:34:37,950   adding 'oncoref/data/cancer-testis-antigens.csv'
2026-06-29T17:34:37,954   adding 'oncoref/data/cancer-tmb.csv'
2026-06-29T17:34:37,956   adding 'oncoref/data/cancer-type-genes.csv'
2026-06-29T17:34:37,960   adding 'oncoref/data/cancer-type-registry.csv'
2026-06-29T17:34:37,962   adding 'oncoref/data/cancer-viral-antigens.csv'
2026-06-29T17:34:38,014   adding 'oncoref/data/canonical-gene-space.csv.gz'
2026-06-29T17:34:38,020   adding 'oncoref/data/cdna-identical-gene-groups.csv'
2026-06-29T17:34:38,025   adding 'oncoref/data/censored-gene-reference-tpm.csv'
2026-06-29T17:34:38,027   adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv'
2026-06-29T17:34:38,037   adding 'oncoref/data/clean-tpm-censored-genes.csv'
2026-06-29T17:34:38,040   adding 'oncoref/data/cohort-registry.csv'
2026-06-29T17:34:38,041   adding 'oncoref/data/cta-candidate-references.csv'
2026-06-29T17:34:38,042   adding 'oncoref/data/cta-ihc-unreliable.csv'
2026-06-29T17:34:38,044   adding 'oncoref/data/degenerate-subtype-pairs.csv'
2026-06-29T17:34:38,045   adding 'oncoref/data/disease-state-rules.csv'
2026-06-29T17:34:38,073   adding 'oncoref/data/ensembl-id-aliases.csv'
2026-06-29T17:34:38,080   adding 'oncoref/data/expression_sources.yaml'
2026-06-29T17:34:38,082   adding 'oncoref/data/extra-tx-mappings.csv'
2026-06-29T17:34:38,083   adding 'oncoref/data/family-burden-map.csv'
2026-06-29T17:34:38,085   adding 'oncoref/data/fusion-expression-effects.csv'
2026-06-29T17:34:38,086   adding 'oncoref/data/fusion-surrogate-expression.csv'
2026-06-29T17:34:38,087   adding 'oncoref/data/hemoglobin-genes.csv'
2026-06-29T17:34:38,089   adding 'oncoref/data/histone-genes.csv'
2026-06-29T17:34:38,090   adding 'oncoref/data/housekeeping-genes.csv'
2026-06-29T17:34:38,091   adding 'oncoref/data/mitochondrial-genes.csv'
2026-06-29T17:34:38,093   adding 'oncoref/data/narrative-gene-sets.csv'
2026-06-29T17:34:38,136   adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz'
2026-06-29T17:34:38,141   adding 'oncoref/data/nuclear-retained-lncrnas.csv'
2026-06-29T17:34:38,143   adding 'oncoref/data/numt-pseudogenes.csv'
2026-06-29T17:34:38,145   adding 'oncoref/data/proteoform-collapse-overrides.csv'
2026-06-29T17:34:38,148   adding 'oncoref/data/proteoform-groups-genome.csv'
2026-06-29T17:34:38,150   adding 'oncoref/data/proteoform-groups.csv'
2026-06-29T17:34:38,152   adding 'oncoref/data/rare-cancer-fusion-rules.csv'
2026-06-29T17:34:38,153   adding 'oncoref/data/ribosomal-protein-genes.csv'
2026-06-29T17:34:38,160   adding 'oncoref/data/ribosomal-protein-pseudogenes.csv'
2026-06-29T17:34:38,162   adding 'oncoref/data/rrna-and-pseudogenes.csv'
2026-06-29T17:34:38,181   adding 'oncoref/data/small-noncoding-rnas.csv'
2026-06-29T17:34:38,183   adding 'oncoref/data/source-matrices.csv'
2026-06-29T17:34:38,185   adding 'oncoref/data/tissue-burden-map.csv'
2026-06-29T17:34:38,188   adding 'oncoref-1.8.23.dist-info/licenses/LICENSE'
2026-06-29T17:34:38,190   adding 'oncoref-1.8.23.dist-info/METADATA'
2026-06-29T17:34:38,191   adding 'oncoref-1.8.23.dist-info/WHEEL'
2026-06-29T17:34:38,192   adding 'oncoref-1.8.23.dist-info/entry_points.txt'
2026-06-29T17:34:38,193   adding 'oncoref-1.8.23.dist-info/top_level.txt'
2026-06-29T17:34:38,195   adding 'oncoref-1.8.23.dist-info/RECORD'
2026-06-29T17:34:38,215   removing build/bdist.linux-armv7l/wheel
2026-06-29T17:34:38,335   Building wheel for oncoref (pyproject.toml): finished with status 'done'
2026-06-29T17:34:38,385   Created wheel for oncoref: filename=oncoref-1.8.23-py3-none-any.whl size=1673940 sha256=93e12c751d36e6067e12446d95075d3f1529e62cabab5ddafc06717951f4b978
2026-06-29T17:34:38,386   Stored in directory: /tmp/pip-ephem-wheel-cache-xczikapr/wheels/2a/c0/4f/fca4b117c8c1515a60e714af789664923a794ce9c456b504f8
2026-06-29T17:34:38,401 Successfully built oncoref
2026-06-29T17:34:38,449 Removed build tracker: '/tmp/pip-build-tracker-6occ8fbc'