2026-06-29T17:41:50,218 Created temporary directory: /tmp/pip-ephem-wheel-cache-fdrxrzjj
2026-06-29T17:41:50,220 Created temporary directory: /tmp/pip-build-tracker-8vn8bjjs
2026-06-29T17:41:50,220 Initialized build tracking at /tmp/pip-build-tracker-8vn8bjjs
2026-06-29T17:41:50,221 Created build tracker: /tmp/pip-build-tracker-8vn8bjjs
2026-06-29T17:41:50,221 Entered build tracker: /tmp/pip-build-tracker-8vn8bjjs
2026-06-29T17:41:50,222 Created temporary directory: /tmp/pip-wheel-z7i4ksls
2026-06-29T17:41:50,225 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-29T17:41:50,228 Created temporary directory: /tmp/pip-ephem-wheel-cache-cpxhlzda
2026-06-29T17:41:50,252 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-29T17:41:50,256 2 location(s) to search for versions of mhcflurry:
2026-06-29T17:41:50,256 * https://pypi.org/simple/mhcflurry/
2026-06-29T17:41:50,256 * https://www.piwheels.org/simple/mhcflurry/
2026-06-29T17:41:50,257 Fetching project page and analyzing links: https://pypi.org/simple/mhcflurry/
2026-06-29T17:41:50,257 Getting page https://pypi.org/simple/mhcflurry/
2026-06-29T17:41:50,259 Found index url https://pypi.org/simple
2026-06-29T17:41:50,486 Fetched page https://pypi.org/simple/mhcflurry/ as application/vnd.pypi.simple.v1+json
2026-06-29T17:41:50,499   Found link https://files.pythonhosted.org/packages/e5/cb/3fa7a07b33cf3df2797a7579428262307c08b553fdedfa14daa21ba4c789/mhcflurry-0.0.8.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 0.0.8
2026-06-29T17:41:50,500   Found link https://files.pythonhosted.org/packages/35/96/070fec2dc7f14885c55321725c51e0fd3cf5b0a735fbfafd2550f5dbb1c9/mhcflurry-0.2.0.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 0.2.0
2026-06-29T17:41:50,501   Found link https://files.pythonhosted.org/packages/c0/64/04096dac4409ba389ae2a473608b8c1b34722d9a11465f3fa427a8ee552f/mhcflurry-0.9.0.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 0.9.0
2026-06-29T17:41:50,501   Found link https://files.pythonhosted.org/packages/8a/07/1bc0f24d7d5d3bced5b807b33ef82a7cb871c626d58674bcb45b4bc3d0e2/mhcflurry-0.9.1.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 0.9.1
2026-06-29T17:41:50,502   Found link https://files.pythonhosted.org/packages/3b/70/8b01c23689e0b7fc76e60ef96c3ce96bc646b6bae39e4e24d9fc8592a1e1/mhcflurry-0.9.2.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 0.9.2
2026-06-29T17:41:50,503   Found link https://files.pythonhosted.org/packages/2a/67/5b7689dbbe5a50aeeea3af8c23c1ed9bbe21b2d2d808cec1e9778f90da26/mhcflurry-1.0.0.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.0.0
2026-06-29T17:41:50,504   Found link https://files.pythonhosted.org/packages/be/bb/361ede9170c41e0ef0c5926640572cce53aa53fee3f5d75f2a0329d186af/mhcflurry-1.1.0.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.1.0
2026-06-29T17:41:50,505   Found link https://files.pythonhosted.org/packages/7b/aa/99060352dd42dd916ff4c01907ddc8f962de3670f4c6ce0da0d107a721a9/mhcflurry-1.2.0.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.2.0
2026-06-29T17:41:50,505   Found link https://files.pythonhosted.org/packages/27/7f/a038d510a70cc82caea968af0461a7f3fc64e32206eb4c35bc0cd0af3515/mhcflurry-1.2.1.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.2.1
2026-06-29T17:41:50,506   Found link https://files.pythonhosted.org/packages/5a/4c/c0b82dfeaa0458d09fbf9ab9fb1f19148cbfc235638dd3f6c0f4feeab90f/mhcflurry-1.2.2.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.2.2
2026-06-29T17:41:50,507   Found link https://files.pythonhosted.org/packages/d5/f3/b4a514fd2bd637e71e25bb1d8a27cfbe7d1eeaab5d30a3e6a3f27dcdafc8/mhcflurry-1.2.3.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.2.3
2026-06-29T17:41:50,508   Found link https://files.pythonhosted.org/packages/c0/ca/d5f3d602a44f35c2707cfceebe72a6180251f631e2260578211e7230e727/mhcflurry-1.2.4.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.2.4
2026-06-29T17:41:50,509   Found link https://files.pythonhosted.org/packages/36/2c/3aa05da8436a4c6fdd6b1c7ac0222a950dc2168346b076c3aff79e9efe9b/mhcflurry-1.3.0.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.3.0
2026-06-29T17:41:50,509   Found link https://files.pythonhosted.org/packages/62/ce/518759b3fd44b52355f6a33d444dc377f195bcd9070c0479ca55d4bef07f/mhcflurry-1.3.1.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.3.1
2026-06-29T17:41:50,510   Found link https://files.pythonhosted.org/packages/0b/37/fc82790c5f8cc51956f1f5bc1cb17ad0a8d95e43a8d0f9ad8b6583e65b75/mhcflurry-1.4.0.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.4.0
2026-06-29T17:41:50,510   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/1c/63/86878c0a78abf18c15dbfda8940e75804185e4a36e369c91b737966b9fb4/mhcflurry-1.4.1-py2-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,511   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/53/84/000dc974a43a8256841ddc5c6f75491282c26869a8fbcc4390795caacb0e/mhcflurry-1.4.2-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,511   Found link https://files.pythonhosted.org/packages/86/be/ade372367a46cf58faa15759e27c21cf45762afb7b1191e35d29e1b1e84d/mhcflurry-1.4.2.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.4.2
2026-06-29T17:41:50,512   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/3f/f3/7e903252c6e752d80ffc56a4596429fd2f202a7dd3586fb78c6fe85c6ef4/mhcflurry-1.4.3-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,513   Found link https://files.pythonhosted.org/packages/de/a7/bce9e8b83465e8358be27dfa6bc568be8cafec30cf0a96463916792bf088/mhcflurry-1.4.3.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.4.3
2026-06-29T17:41:50,513   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/ef/95/cc8cc7324f4fdf7f32d8882fc4d25ae208038561e46cf0e7061f9dd88594/mhcflurry-1.6.0-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,514   Found link https://files.pythonhosted.org/packages/e4/dc/6c6d6aa6b717d29995b1a3c24081dcf2d32d84e8f7880c8bbb952dae4653/mhcflurry-1.6.0.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.6.0
2026-06-29T17:41:50,515   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/01/b8/995d20a77017ac15776e3ed5b51f86addc233e37f80a5c6a0f773aca9d8d/mhcflurry-1.6.1-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,515   Found link https://files.pythonhosted.org/packages/3d/37/088569b4b15534e17c3dc366537bcd228c3b8f371b5e55c6ee10d82be6a5/mhcflurry-1.6.1.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 1.6.1
2026-06-29T17:41:50,516   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/95/04/e3c19231e16d24555d507af9f70e1cd4eb3aaba51db5b99c7505fea00492/mhcflurry-2.0.0-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,517   Found link https://files.pythonhosted.org/packages/22/c2/4ebfb1643353547a77526992073b5eeb3763c4f8e6f68acc68438eb83aa6/mhcflurry-2.0.0.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.0.0
2026-06-29T17:41:50,518   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/89/41/4b353961350091a84647a3d5d92df31479971029f42e9c4c480d0c1c1b88/mhcflurry-2.0.1-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,518   Found link https://files.pythonhosted.org/packages/e0/88/70870cb39551f82553805c213fa2e2a7025117773f9d580910810a200825/mhcflurry-2.0.1.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.0.1
2026-06-29T17:41:50,519   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/bb/c8/80a5039ac18457f8b74ae0240cf78e037567008ce49930df998adc2398e1/mhcflurry-2.0.2-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,520   Found link https://files.pythonhosted.org/packages/47/a1/96d6037dc2c266d232b6ed32cfec17380f14daa6da94ee730906e3c070b5/mhcflurry-2.0.2.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.0.2
2026-06-29T17:41:50,520   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/67/de/3ccaa8c59d54fd0a36212e539ae56614ad997fb414f1d2875fc0b850c342/mhcflurry-2.0.3-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,521   Found link https://files.pythonhosted.org/packages/29/95/17f4e42afcfd4daef952a9a4d95553eeb90e8689459ffa03dd49c6a74390/mhcflurry-2.0.3.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.0.3
2026-06-29T17:41:50,522   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/78/7a/1fc9a94007caf2c8d7fd72d942a172a900c7841703f8a2beb249aba85c20/mhcflurry-2.0.4-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,522   Found link https://files.pythonhosted.org/packages/19/37/330221cf831666153121722049678254a413c9b9b512637fc8ba346da2f2/mhcflurry-2.0.4.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.0.4
2026-06-29T17:41:50,523   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/56/93/b322947a75dee992d78940f56661efe350d8cd01b7803c63e39d26d19d56/mhcflurry-2.0.5-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,523   Found link https://files.pythonhosted.org/packages/e8/39/ce0588d42bc0e660891f4725b307a8e0750e655c954dc8b13eb431f5245c/mhcflurry-2.0.5.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.0.5
2026-06-29T17:41:50,524   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/19/2f/4d33286e48d9477a897cc3e07e0bb21e302c2ecd91f6ce6f1d707b02a9a2/mhcflurry-2.0.6-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,525   Found link https://files.pythonhosted.org/packages/b6/8c/449b1b81d3731cd668df54ff0b14bf9083378717a09deaef8bf884be6cf2/mhcflurry-2.0.6.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.0.6
2026-06-29T17:41:50,525   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/0b/f8/00f620a4b7d7b2d175522b282b19797165f2a434609b1bfe1ebf111ceed6/mhcflurry-2.1.0-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,526   Found link https://files.pythonhosted.org/packages/5c/cf/fb97cd7f6ee90460080b60f212313a49061d64c887655e36e4bc570b8090/mhcflurry-2.1.0.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.1.0
2026-06-29T17:41:50,527   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/b6/fe/e9f6a0558025a2bdeadf33bd26c8b0406e0bed6f28102e65a40bbafe27eb/mhcflurry-2.1.1-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,527   Found link https://files.pythonhosted.org/packages/33/96/303d51c4837f3fd0a070ae688dfa32fe77d168ef28ad2b4f7e80628372ec/mhcflurry-2.1.1.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.1.1
2026-06-29T17:41:50,528   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/35/24/7dec52bd074174fb29a55b0fbc47b068ceb9dc88902c2340d1cb8e2f8ec7/mhcflurry-2.1.2-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,529   Found link https://files.pythonhosted.org/packages/7b/17/a41e41e9dada70c0dbf25b00f233cdb6fdc0414737becd686ff06f4382a2/mhcflurry-2.1.2.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.1.2
2026-06-29T17:41:50,529   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/ae/f1/18b213ad5397fd298887e67757c1ce58fa79f8119f0796a70ad3977f789e/mhcflurry-2.1.4-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,530   Found link https://files.pythonhosted.org/packages/41/3a/284f8069f9c694c0cd17079137c346de2bcd8b27d2d9925a9fc6e7725916/mhcflurry-2.1.4.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.1.4
2026-06-29T17:41:50,531   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/35/c0/4f5b7a0795598299a1061e906b1824771ea7bbb989ec00e651c4f7965e88/mhcflurry-2.1.5-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/)
2026-06-29T17:41:50,531   Found link https://files.pythonhosted.org/packages/fe/94/b4c03d9bbf5a87fee1d050ecedcc3a79787300a80b6ea52ee941266dc417/mhcflurry-2.1.5.tar.gz (from https://pypi.org/simple/mhcflurry/), version: 2.1.5
2026-06-29T17:41:50,532   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/ac/b1/322c968f3cc2d5901112c05cda8865a0fd60704951beb4a72a1df4172680/mhcflurry-2.2.0rc1-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,533   Found link https://files.pythonhosted.org/packages/46/a8/add2af12cf5963f158fa78dbf9d1756a51e9d839ea0b732c067c2ccabea1/mhcflurry-2.2.0rc1.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.2.0rc1
2026-06-29T17:41:50,533   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/32/3a/fb44f8641dd028d8fb4fd86d2cecab1e53d4c22cba58ac832c50b91d3b63/mhcflurry-2.2.0rc2-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,534   Found link https://files.pythonhosted.org/packages/e9/06/cb04742d8755e10af5c339adf0c732bf1025f256e0c810fb1c236ac2c587/mhcflurry-2.2.0rc2.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.2.0rc2
2026-06-29T17:41:50,535   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/b0/0b/991cf797d62a42625a2f765fcb31500dc2da0ba2913b6ab5c1bac52802d8/mhcflurry-2.2.0rc3-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,536   Found link https://files.pythonhosted.org/packages/a0/15/637aaecb13b603dffa11dbceb3c3b8cdd7b0260ee80dc871fa0ad48890f8/mhcflurry-2.2.0rc3.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.2.0rc3
2026-06-29T17:41:50,537   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/22/cb/eb90464ee9e55df9741f7da3efb60c72b23caaf143a95415842603e4dd35/mhcflurry-2.2.0-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,538   Found link https://files.pythonhosted.org/packages/36/7e/f37682379041761cc1377543d1aa790c0ce38fac597a92730d9948587018/mhcflurry-2.2.0.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.2.0
2026-06-29T17:41:50,538   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/9e/f7/a465e7fef6c06fb649f5334550a73b4db5f387e7dbd3517a778d1c3fe923/mhcflurry-2.2.1-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,539   Found link https://files.pythonhosted.org/packages/dd/7f/9001cdc0a1dabfa9dac11a53520eb84f1f6b1167c49390bf332864367dcf/mhcflurry-2.2.1.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.2.1
2026-06-29T17:41:50,540   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/fc/9e/fafc68780fd7c70165d8efe874734b9d61a6582502ebb47d7461db5add50/mhcflurry-2.3.0rc1-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,541   Found link https://files.pythonhosted.org/packages/bf/b6/625b0fbd70a6316014842567961bff3ed2a878b2f04504bffa226ee6db7f/mhcflurry-2.3.0rc1.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.3.0rc1
2026-06-29T17:41:50,542   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/3f/9d/dd2829eafd8b45eb6dca75e8904977a36de72187624ff5f192daa2bd7f05/mhcflurry-2.3.0rc2-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,543   Found link https://files.pythonhosted.org/packages/80/02/5fca0eca12fd5ffd415dcf4b6cd497202f0c4401ee48354182e1e012de7b/mhcflurry-2.3.0rc2.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.3.0rc2
2026-06-29T17:41:50,544   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/a7/c9/a3f0e1fafc58a6cfb1dbb6d8ae9d46e37c34623b5ab22dafeb77bf4d2a04/mhcflurry-2.3.0rc3-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,544   Found link https://files.pythonhosted.org/packages/ad/f6/b2cde64f2146591b921c6f1cb0f4022443ac2923939712753c1f608baf2a/mhcflurry-2.3.0rc3.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.3.0rc3
2026-06-29T17:41:50,545   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/e1/df/462c1a9c2f825c8ece18d3db27b62f36995202a11784fc11dd0227a8aa57/mhcflurry-2.3.0rc4-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,546   Found link https://files.pythonhosted.org/packages/00/0e/39a708df446596d59fc3fedd4ae536c07bca41136108216540dd1e8fb320/mhcflurry-2.3.0rc4.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.3.0rc4
2026-06-29T17:41:50,546   Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/8d/6d/20c845374ac8130150a36b5ab1d188300e50f186116c3ef8f93b6d767a81/mhcflurry-2.3.0rc5-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,547   Found link https://files.pythonhosted.org/packages/d5/fb/cdbf883562c5b98f8b7e9016f6bc9f4e0e0606847dace3a31b4062cd9ab0/mhcflurry-2.3.0rc5.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.3.0rc5
2026-06-29T17:41:50,548 Fetching project page and analyzing links: https://www.piwheels.org/simple/mhcflurry/
2026-06-29T17:41:50,549 Getting page https://www.piwheels.org/simple/mhcflurry/
2026-06-29T17:41:50,550 Found index url https://www.piwheels.org/simple
2026-06-29T17:41:50,731 Fetched page https://www.piwheels.org/simple/mhcflurry/ as text/html
2026-06-29T17:41:50,743   Skipping link: No binaries permitted for mhcflurry: https://www.piwheels.org/simple/mhcflurry/mhcflurry-2.3.0rc4-py3-none-any.whl#sha256=b5d87a2d595c6ac45f9fe551a083d4e12326ac798edd7b00bb9a7b72ac908496 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,744   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.3.0rc3-py3-none-any.whl#sha256=c4668d591a6fac61a98ea8ca546f91f08bcad8446604515f4f32ecfe811151ab (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,745   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.3.0rc2-py3-none-any.whl#sha256=9de7ba1b160899448459f5bd7ca21eba49f1fd04aa3fb7cb6a763fbd6609c9d6 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,745   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.3.0rc1-py3-none-any.whl#sha256=3876a5f844424762eb16835dff1babbb71d8bb0a949ab8dc51ff00c8bc3fb4a6 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,746   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.2.1-py3-none-any.whl#sha256=5cbe982c9d271a138ef93e131787ebcdd76279ade4dc84d74e72d27087d92bd6 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,746   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.2.0-py3-none-any.whl#sha256=67a4acd0ed1669f780cf6be5d3a0834760d23bda891dd9e2f6606cb205dfa511 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,747   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.2.0rc3-py3-none-any.whl#sha256=66a453296d02a43b7b69f6d696ea175f460d88734e2722db73a7e37ddf278cd8 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,748   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.2.0rc2-py3-none-any.whl#sha256=e2be5323021a7649ee77727ad8cebda0f00631e85ba9571d5f742b17d3c74a30 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,749   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.2.0rc1-py3-none-any.whl#sha256=45ad48792aabdec478a92ccba1210441b0b2bd0706f2ffafe3aa52edc1d96b70 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10)
2026-06-29T17:41:50,749   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.1.5-py3-none-any.whl#sha256=9b4feffe7741a3353037f129abdd67cd6525109e6c4281de5775df02944cd7a4 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,749   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.1.4-py3-none-any.whl#sha256=e1cb5d17ee540fbcce1ca14fd05cdf591e058fc2e2fd51ea6a34720f511192e1 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,750   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.1.2-py3-none-any.whl#sha256=c4b110ca75e43ee23d5706e080fadfaee14244109afde1a599c9da7aa639b189 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,750   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.1.1-py3-none-any.whl#sha256=59ab09a670556857d8c0b481f3501b7d45ec0501f20011742a2944ff7bd989c0 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,751   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.1.0-py3-none-any.whl#sha256=a2e5904b05122ea5237bccc1a57f9aa0990e040769140896b440cef89ce49311 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,751   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.0.6-py3-none-any.whl#sha256=c89fee65de354f46b25e70fb8c828b82971baaaef802e54d6606b4a82a783e08 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,752   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.0.5-py3-none-any.whl#sha256=1863e40b5d781e8d60ee18e5149985860a6d6bbd778448dc39d64066d0cab011 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,753   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.0.4-py3-none-any.whl#sha256=3cac1f9cf7c63d9c8670cb1cf64e98d7c4ad795741344863bab4c74fc4b7c4ce (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,753   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.0.3-py3-none-any.whl#sha256=61ef56f3a91dcd6575b6d6768930724f66e43fe555547c73eaf6ed60ca880f4c (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,754   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.0.2-py3-none-any.whl#sha256=7a8d41ffa6be78f2d8b06a8969a4189a387804e475bd521578fcdc242496ef76 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,754   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.0.1-py3-none-any.whl#sha256=3f16d143dc3b6ea04180b1812d7754099a36cbbed46260736cab274362503e99 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,755   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.0.0-py3-none-any.whl#sha256=4eccf84c9ec13aa69e64d3d25bee247ec68addde8ef6ea8220e024164bedd15e (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,756   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.6.1-py3-none-any.whl#sha256=3b436e10b818b960b7cee903a8518454df68b8894412ab2bec9e070278945491 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,757   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.6.0-py3-none-any.whl#sha256=c2b7f63dba9f7e53f23f0663e0dc906129c06b2095b0b62fe09c152109a5192f (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,757   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.4.3-py3-none-any.whl#sha256=ddfb67c6a80d33b8a5369810738f4a00202a52b10d9cd17a481d1cecef2f2835 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,757   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.4.2-py3-none-any.whl#sha256=7c3180ca24ea6671fbaa08570c105930b2f16b986d3c27500e7d58671ae26a38 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,758   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.4.0-py3-none-any.whl#sha256=0d0e216d50ad768a1e57c37ee6c36af33fa133c40320bf86510665b402bf1786 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,758   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.3.1-py3-none-any.whl#sha256=67777f2ff75f5f1db9c1f0509eacb61088bda55c34fe78604478b52fe07958cf (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,759   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.3.0-py3-none-any.whl#sha256=8a66cfdd977444977c94f246f728fb0a64377b121c6508e6136e9592b91567f1 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,759   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.2.4-py3-none-any.whl#sha256=fee68ad950b5784cafe2bab73b6378a98a106149f3f6403ad39629b390ce9475 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,760   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.2.3-py3-none-any.whl#sha256=de0badaae1be5dbed9f134ccd1276f91c2b6f48dd7a3249070e780421294d95b (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,761   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.2.2-py3-none-any.whl#sha256=e1d4eab5f6c0534f9f8a269f146d45472b16a782056189ab5b13940d34a062ed (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,761   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.2.1-py3-none-any.whl#sha256=fd2e9fb603ce74d6ff34ff8c11abda4d58972fcce5797239f65a6119e4ced450 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,762   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.2.0-py3-none-any.whl#sha256=c1ca26850e04216984721787c9daca69ebdf0b6c588024594d4bd3d0814434fc (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,762   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.1.0-py3-none-any.whl#sha256=75412121b38c03e7b0fa1a339d28c0217b36288ef0f561986cf3a6e6bb30cd9f (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,763   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-1.0.0-py3-none-any.whl#sha256=7ae6ff12d2104aeda6bdf3b67f149453911d9604a1ead9f36be6bc902bf8a921 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,764   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-0.9.2-py3-none-any.whl#sha256=7de8ef15e9ca6b6d944ea672e729ba967aecc2429be05ceeabfd375ec3b4690b (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,764   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-0.9.1-py3-none-any.whl#sha256=b745742bbad3dac401e51bd93d597fc15be7b7f03ade04b2e6220a5fb013b7dc (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,765   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-0.9.0-py3-none-any.whl#sha256=53e9b7b73ddf206569422f49ea9d8b6ca6d43bd03a1128e7b0580de220c15902 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,765   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-0.2.0-py3-none-any.whl#sha256=72ec6d5bf9eb753a51e902aceadd63c7813dac674512a3a59ff0dc7cfc3d97d2 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,766   Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-0.0.8-py3-none-any.whl#sha256=ea90be84eebf1f57a039385abb709d3e83fe73e559569c60cace0b87fc272c22 (from https://www.piwheels.org/simple/mhcflurry/)
2026-06-29T17:41:50,766 Skipping link: not a file: https://www.piwheels.org/simple/mhcflurry/
2026-06-29T17:41:50,767 Skipping link: not a file: https://pypi.org/simple/mhcflurry/
2026-06-29T17:41:50,792 Given no hashes to check 1 links for project 'mhcflurry': discarding no candidates
2026-06-29T17:41:50,811 Collecting mhcflurry==2.3.0rc5
2026-06-29T17:41:50,814   Created temporary directory: /tmp/pip-unpack-7lnlp0vm
2026-06-29T17:41:51,044   Downloading mhcflurry-2.3.0rc5.tar.gz (429 kB)
2026-06-29T17:41:51,445   Added mhcflurry==2.3.0rc5 from https://files.pythonhosted.org/packages/d5/fb/cdbf883562c5b98f8b7e9016f6bc9f4e0e0606847dace3a31b4062cd9ab0/mhcflurry-2.3.0rc5.tar.gz to build tracker '/tmp/pip-build-tracker-8vn8bjjs'
2026-06-29T17:41:51,446   Running setup.py (path:/tmp/pip-wheel-z7i4ksls/mhcflurry_3155ebe96c82444b9f18a30714d79aa1/setup.py) egg_info for package mhcflurry
2026-06-29T17:41:51,447   Created temporary directory: /tmp/pip-pip-egg-info-cdiqi8zz
2026-06-29T17:41:51,448   Preparing metadata (setup.py): started
2026-06-29T17:41:51,449   Running command python setup.py egg_info
2026-06-29T17:41:52,385   running egg_info
2026-06-29T17:41:52,414   creating /tmp/pip-pip-egg-info-cdiqi8zz/mhcflurry.egg-info
2026-06-29T17:41:52,415   writing /tmp/pip-pip-egg-info-cdiqi8zz/mhcflurry.egg-info/PKG-INFO
2026-06-29T17:41:52,419   writing dependency_links to /tmp/pip-pip-egg-info-cdiqi8zz/mhcflurry.egg-info/dependency_links.txt
2026-06-29T17:41:52,421   writing entry points to /tmp/pip-pip-egg-info-cdiqi8zz/mhcflurry.egg-info/entry_points.txt
2026-06-29T17:41:52,423   writing requirements to /tmp/pip-pip-egg-info-cdiqi8zz/mhcflurry.egg-info/requires.txt
2026-06-29T17:41:52,424   writing top-level names to /tmp/pip-pip-egg-info-cdiqi8zz/mhcflurry.egg-info/top_level.txt
2026-06-29T17:41:52,425   writing manifest file '/tmp/pip-pip-egg-info-cdiqi8zz/mhcflurry.egg-info/SOURCES.txt'
2026-06-29T17:41:52,525   reading manifest file '/tmp/pip-pip-egg-info-cdiqi8zz/mhcflurry.egg-info/SOURCES.txt'
2026-06-29T17:41:52,527   adding license file 'LICENSE'
2026-06-29T17:41:52,533   writing manifest file '/tmp/pip-pip-egg-info-cdiqi8zz/mhcflurry.egg-info/SOURCES.txt'
2026-06-29T17:41:52,643   Preparing metadata (setup.py): finished with status 'done'
2026-06-29T17:41:52,648   Source in /tmp/pip-wheel-z7i4ksls/mhcflurry_3155ebe96c82444b9f18a30714d79aa1 has version 2.3.0rc5, which satisfies requirement mhcflurry==2.3.0rc5 from https://files.pythonhosted.org/packages/d5/fb/cdbf883562c5b98f8b7e9016f6bc9f4e0e0606847dace3a31b4062cd9ab0/mhcflurry-2.3.0rc5.tar.gz
2026-06-29T17:41:52,649   Removed mhcflurry==2.3.0rc5 from https://files.pythonhosted.org/packages/d5/fb/cdbf883562c5b98f8b7e9016f6bc9f4e0e0606847dace3a31b4062cd9ab0/mhcflurry-2.3.0rc5.tar.gz from build tracker '/tmp/pip-build-tracker-8vn8bjjs'
2026-06-29T17:41:52,656 Created temporary directory: /tmp/pip-unpack-71um46qw
2026-06-29T17:41:52,657 Building wheels for collected packages: mhcflurry
2026-06-29T17:41:52,662   Created temporary directory: /tmp/pip-wheel-53hz52vl
2026-06-29T17:41:52,663   Building wheel for mhcflurry (setup.py): started
2026-06-29T17:41:52,664   Destination directory: /tmp/pip-wheel-53hz52vl
2026-06-29T17:41:52,664   Running command python setup.py bdist_wheel
2026-06-29T17:41:53,515   running bdist_wheel
2026-06-29T17:41:53,651   running build
2026-06-29T17:41:53,651   running build_py
2026-06-29T17:41:53,683   creating build/lib/mhcflurry
2026-06-29T17:41:53,685   copying mhcflurry/pseudosequences.py -> build/lib/mhcflurry
2026-06-29T17:41:53,688   copying mhcflurry/predict_scan_command.py -> build/lib/mhcflurry
2026-06-29T17:41:53,690   copying mhcflurry/cluster_worker_entry_point.py -> build/lib/mhcflurry
2026-06-29T17:41:53,693   copying mhcflurry/class1_processing_neural_network.py -> build/lib/mhcflurry
2026-06-29T17:41:53,696   copying mhcflurry/__init__.py -> build/lib/mhcflurry
2026-06-29T17:41:53,698   copying mhcflurry/hyperparameters.py -> build/lib/mhcflurry
2026-06-29T17:41:53,700   copying mhcflurry/allele_encoding.py -> build/lib/mhcflurry
2026-06-29T17:41:53,702   copying mhcflurry/peptide_reference.py -> build/lib/mhcflurry
2026-06-29T17:41:53,704   copying mhcflurry/common.py -> build/lib/mhcflurry
2026-06-29T17:41:53,707   copying mhcflurry/proteome_decoys.py -> build/lib/mhcflurry
2026-06-29T17:41:53,709   copying mhcflurry/scoring.py -> build/lib/mhcflurry
2026-06-29T17:41:53,711   copying mhcflurry/train_pan_allele_models_command.py -> build/lib/mhcflurry
2026-06-29T17:41:53,714   copying mhcflurry/class1_affinity_predictor.py -> build/lib/mhcflurry
2026-06-29T17:41:53,720   copying mhcflurry/train_allele_specific_models_command.py -> build/lib/mhcflurry
2026-06-29T17:41:53,723   copying mhcflurry/regression_target.py -> build/lib/mhcflurry
2026-06-29T17:41:53,725   copying mhcflurry/calibrate_percentile_ranks_command.py -> build/lib/mhcflurry
2026-06-29T17:41:53,728   copying mhcflurry/workload_planning.py -> build/lib/mhcflurry
2026-06-29T17:41:53,731   copying mhcflurry/flanking_encoding.py -> build/lib/mhcflurry
2026-06-29T17:41:53,733   copying mhcflurry/class1_presentation_predictor.py -> build/lib/mhcflurry
2026-06-29T17:41:53,737   copying mhcflurry/class1_neural_network.py -> build/lib/mhcflurry
2026-06-29T17:41:53,746   copying mhcflurry/class1_processing_predictor.py -> build/lib/mhcflurry
2026-06-29T17:41:53,749   copying mhcflurry/class1_affinity_training_data.py -> build/lib/mhcflurry
2026-06-29T17:41:53,752   copying mhcflurry/data_dependent_weights_initialization.py -> build/lib/mhcflurry
2026-06-29T17:41:53,754   copying mhcflurry/training_benchmark.py -> build/lib/mhcflurry
2026-06-29T17:41:53,757   copying mhcflurry/select_allele_specific_models_command.py -> build/lib/mhcflurry
2026-06-29T17:41:53,760   copying mhcflurry/percent_rank_transform.py -> build/lib/mhcflurry
2026-06-29T17:41:53,763   copying mhcflurry/downloads_command.py -> build/lib/mhcflurry
2026-06-29T17:41:53,765   copying mhcflurry/encodable_sequences.py -> build/lib/mhcflurry
2026-06-29T17:41:53,768   copying mhcflurry/pytorch_layers.py -> build/lib/mhcflurry
2026-06-29T17:41:53,770   copying mhcflurry/testing_utils.py -> build/lib/mhcflurry
2026-06-29T17:41:53,772   copying mhcflurry/downloads.py -> build/lib/mhcflurry
2026-06-29T17:41:53,775   copying mhcflurry/local_parallelism.py -> build/lib/mhcflurry
2026-06-29T17:41:53,780   copying mhcflurry/torch_training_loop.py -> build/lib/mhcflurry
2026-06-29T17:41:53,782   copying mhcflurry/fasta.py -> build/lib/mhcflurry
2026-06-29T17:41:53,784   copying mhcflurry/pytorch_losses.py -> build/lib/mhcflurry
2026-06-29T17:41:53,787   copying mhcflurry/motif_summary.py -> build/lib/mhcflurry
2026-06-29T17:41:53,789   copying mhcflurry/version.py -> build/lib/mhcflurry
2026-06-29T17:41:53,791   copying mhcflurry/custom_loss.py -> build/lib/mhcflurry
2026-06-29T17:41:53,794   copying mhcflurry/predict_command.py -> build/lib/mhcflurry
2026-06-29T17:41:53,796   copying mhcflurry/cluster_parallelism.py -> build/lib/mhcflurry
2026-06-29T17:41:53,799   copying mhcflurry/ensemble_centrality.py -> build/lib/mhcflurry
2026-06-29T17:41:53,801   copying mhcflurry/train_presentation_models_command.py -> build/lib/mhcflurry
2026-06-29T17:41:53,803   copying mhcflurry/device_footprint.py -> build/lib/mhcflurry
2026-06-29T17:41:53,806   copying mhcflurry/train_processing_models_command.py -> build/lib/mhcflurry
2026-06-29T17:41:53,808   copying mhcflurry/random_negative_peptides.py -> build/lib/mhcflurry
2026-06-29T17:41:53,811   copying mhcflurry/amino_acid.py -> build/lib/mhcflurry
2026-06-29T17:41:53,814   copying mhcflurry/select_pan_allele_models_command.py -> build/lib/mhcflurry
2026-06-29T17:41:53,817   copying mhcflurry/select_processing_models_command.py -> build/lib/mhcflurry
2026-06-29T17:41:53,820   creating build/lib/mhcflurry/cli
2026-06-29T17:41:53,821   copying mhcflurry/cli/__init__.py -> build/lib/mhcflurry/cli
2026-06-29T17:41:53,823   copying mhcflurry/cli/plot_model_comparison.py -> build/lib/mhcflurry/cli
2026-06-29T17:41:53,825   copying mhcflurry/cli/compare_models.py -> build/lib/mhcflurry/cli
2026-06-29T17:41:53,829   copying mhcflurry/cli/main.py -> build/lib/mhcflurry/cli
2026-06-29T17:41:53,834   copying mhcflurry/downloads.yml -> build/lib/mhcflurry
2026-06-29T17:41:53,869   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-06-29T17:41:53,870   !!

2026-06-29T17:41:53,871           ********************************************************************************
2026-06-29T17:41:53,871           Please avoid running ``setup.py`` directly.
2026-06-29T17:41:53,872           Instead, use pypa/build, pypa/installer or other
2026-06-29T17:41:53,872           standards-based tools.

2026-06-29T17:41:53,873           This deprecation is overdue, please update your project and remove deprecated
2026-06-29T17:41:53,874           calls to avoid build errors in the future.

2026-06-29T17:41:53,875           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-06-29T17:41:53,875           ********************************************************************************

2026-06-29T17:41:53,876   !!
2026-06-29T17:41:53,877     self.initialize_options()
2026-06-29T17:41:53,900   installing to build/bdist.linux-armv7l/wheel
2026-06-29T17:41:53,901   running install
2026-06-29T17:41:53,925   running install_lib
2026-06-29T17:41:53,954   creating build/bdist.linux-armv7l/wheel
2026-06-29T17:41:53,957   creating build/bdist.linux-armv7l/wheel/mhcflurry
2026-06-29T17:41:53,958   copying build/lib/mhcflurry/pseudosequences.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,961   copying build/lib/mhcflurry/predict_scan_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,964   copying build/lib/mhcflurry/cluster_worker_entry_point.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,966   copying build/lib/mhcflurry/class1_processing_neural_network.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,969   copying build/lib/mhcflurry/__init__.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,971   copying build/lib/mhcflurry/hyperparameters.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,973   copying build/lib/mhcflurry/allele_encoding.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,976   copying build/lib/mhcflurry/peptide_reference.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,978   copying build/lib/mhcflurry/common.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,981   copying build/lib/mhcflurry/proteome_decoys.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,983   copying build/lib/mhcflurry/scoring.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,985   copying build/lib/mhcflurry/train_pan_allele_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,988   copying build/lib/mhcflurry/class1_affinity_predictor.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,992   copying build/lib/mhcflurry/train_allele_specific_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,995   copying build/lib/mhcflurry/regression_target.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:53,997   copying build/lib/mhcflurry/calibrate_percentile_ranks_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,000   copying build/lib/mhcflurry/workload_planning.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,003   copying build/lib/mhcflurry/flanking_encoding.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,006   copying build/lib/mhcflurry/class1_presentation_predictor.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,010   copying build/lib/mhcflurry/class1_neural_network.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,019   copying build/lib/mhcflurry/downloads.yml -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,022   copying build/lib/mhcflurry/class1_processing_predictor.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,025   copying build/lib/mhcflurry/class1_affinity_training_data.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,028   copying build/lib/mhcflurry/data_dependent_weights_initialization.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,030   copying build/lib/mhcflurry/training_benchmark.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,033   copying build/lib/mhcflurry/select_allele_specific_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,036   copying build/lib/mhcflurry/percent_rank_transform.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,038   copying build/lib/mhcflurry/downloads_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,041   copying build/lib/mhcflurry/encodable_sequences.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,043   copying build/lib/mhcflurry/pytorch_layers.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,046   copying build/lib/mhcflurry/testing_utils.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,047   copying build/lib/mhcflurry/downloads.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,050   copying build/lib/mhcflurry/local_parallelism.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,054   copying build/lib/mhcflurry/torch_training_loop.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,057   copying build/lib/mhcflurry/fasta.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,059   creating build/bdist.linux-armv7l/wheel/mhcflurry/cli
2026-06-29T17:41:54,061   copying build/lib/mhcflurry/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./mhcflurry/cli
2026-06-29T17:41:54,063   copying build/lib/mhcflurry/cli/plot_model_comparison.py -> build/bdist.linux-armv7l/wheel/./mhcflurry/cli
2026-06-29T17:41:54,065   copying build/lib/mhcflurry/cli/compare_models.py -> build/bdist.linux-armv7l/wheel/./mhcflurry/cli
2026-06-29T17:41:54,069   copying build/lib/mhcflurry/cli/main.py -> build/bdist.linux-armv7l/wheel/./mhcflurry/cli
2026-06-29T17:41:54,071   copying build/lib/mhcflurry/pytorch_losses.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,074   copying build/lib/mhcflurry/motif_summary.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,076   copying build/lib/mhcflurry/version.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,078   copying build/lib/mhcflurry/custom_loss.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,080   copying build/lib/mhcflurry/predict_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,083   copying build/lib/mhcflurry/cluster_parallelism.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,086   copying build/lib/mhcflurry/ensemble_centrality.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,087   copying build/lib/mhcflurry/train_presentation_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,090   copying build/lib/mhcflurry/device_footprint.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,092   copying build/lib/mhcflurry/train_processing_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,095   copying build/lib/mhcflurry/random_negative_peptides.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,098   copying build/lib/mhcflurry/amino_acid.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,100   copying build/lib/mhcflurry/select_pan_allele_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,103   copying build/lib/mhcflurry/select_processing_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry
2026-06-29T17:41:54,105   running install_egg_info
2026-06-29T17:41:54,140   running egg_info
2026-06-29T17:41:54,167   writing mhcflurry.egg-info/PKG-INFO
2026-06-29T17:41:54,171   writing dependency_links to mhcflurry.egg-info/dependency_links.txt
2026-06-29T17:41:54,173   writing entry points to mhcflurry.egg-info/entry_points.txt
2026-06-29T17:41:54,175   writing requirements to mhcflurry.egg-info/requires.txt
2026-06-29T17:41:54,176   writing top-level names to mhcflurry.egg-info/top_level.txt
2026-06-29T17:41:54,211   reading manifest file 'mhcflurry.egg-info/SOURCES.txt'
2026-06-29T17:41:54,218   adding license file 'LICENSE'
2026-06-29T17:41:54,225   writing manifest file 'mhcflurry.egg-info/SOURCES.txt'
2026-06-29T17:41:54,227   Copying mhcflurry.egg-info to build/bdist.linux-armv7l/wheel/./mhcflurry-2.3.0rc5-py3.11.egg-info
2026-06-29T17:41:54,239   running install_scripts
2026-06-29T17:41:54,253   creating build/bdist.linux-armv7l/wheel/mhcflurry-2.3.0rc5.dist-info/WHEEL
2026-06-29T17:41:54,255   creating '/tmp/pip-wheel-53hz52vl/mhcflurry-2.3.0rc5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-29T17:41:54,258   adding 'mhcflurry/__init__.py'
2026-06-29T17:41:54,260   adding 'mhcflurry/allele_encoding.py'
2026-06-29T17:41:54,264   adding 'mhcflurry/amino_acid.py'
2026-06-29T17:41:54,268   adding 'mhcflurry/calibrate_percentile_ranks_command.py'
2026-06-29T17:41:54,283   adding 'mhcflurry/class1_affinity_predictor.py'
2026-06-29T17:41:54,285   adding 'mhcflurry/class1_affinity_training_data.py'
2026-06-29T17:41:54,310   adding 'mhcflurry/class1_neural_network.py'
2026-06-29T17:41:54,318   adding 'mhcflurry/class1_presentation_predictor.py'
2026-06-29T17:41:54,324   adding 'mhcflurry/class1_processing_neural_network.py'
2026-06-29T17:41:54,326   adding 'mhcflurry/class1_processing_predictor.py'
2026-06-29T17:41:54,328   adding 'mhcflurry/cluster_parallelism.py'
2026-06-29T17:41:54,330   adding 'mhcflurry/cluster_worker_entry_point.py'
2026-06-29T17:41:54,333   adding 'mhcflurry/common.py'
2026-06-29T17:41:54,335   adding 'mhcflurry/custom_loss.py'
2026-06-29T17:41:54,337   adding 'mhcflurry/data_dependent_weights_initialization.py'
2026-06-29T17:41:54,339   adding 'mhcflurry/device_footprint.py'
2026-06-29T17:41:54,341   adding 'mhcflurry/downloads.py'
2026-06-29T17:41:54,343   adding 'mhcflurry/downloads.yml'
2026-06-29T17:41:54,345   adding 'mhcflurry/downloads_command.py'
2026-06-29T17:41:54,348   adding 'mhcflurry/encodable_sequences.py'
2026-06-29T17:41:54,349   adding 'mhcflurry/ensemble_centrality.py'
2026-06-29T17:41:54,351   adding 'mhcflurry/fasta.py'
2026-06-29T17:41:54,353   adding 'mhcflurry/flanking_encoding.py'
2026-06-29T17:41:54,354   adding 'mhcflurry/hyperparameters.py'
2026-06-29T17:41:54,364   adding 'mhcflurry/local_parallelism.py'
2026-06-29T17:41:54,367   adding 'mhcflurry/motif_summary.py'
2026-06-29T17:41:54,368   adding 'mhcflurry/peptide_reference.py'
2026-06-29T17:41:54,370   adding 'mhcflurry/percent_rank_transform.py'
2026-06-29T17:41:54,373   adding 'mhcflurry/predict_command.py'
2026-06-29T17:41:54,375   adding 'mhcflurry/predict_scan_command.py'
2026-06-29T17:41:54,377   adding 'mhcflurry/proteome_decoys.py'
2026-06-29T17:41:54,378   adding 'mhcflurry/pseudosequences.py'
2026-06-29T17:41:54,380   adding 'mhcflurry/pytorch_layers.py'
2026-06-29T17:41:54,382   adding 'mhcflurry/pytorch_losses.py'
2026-06-29T17:41:54,386   adding 'mhcflurry/random_negative_peptides.py'
2026-06-29T17:41:54,387   adding 'mhcflurry/regression_target.py'
2026-06-29T17:41:54,389   adding 'mhcflurry/scoring.py'
2026-06-29T17:41:54,392   adding 'mhcflurry/select_allele_specific_models_command.py'
2026-06-29T17:41:54,395   adding 'mhcflurry/select_pan_allele_models_command.py'
2026-06-29T17:41:54,397   adding 'mhcflurry/select_processing_models_command.py'
2026-06-29T17:41:54,398   adding 'mhcflurry/testing_utils.py'
2026-06-29T17:41:54,400   adding 'mhcflurry/torch_training_loop.py'
2026-06-29T17:41:54,403   adding 'mhcflurry/train_allele_specific_models_command.py'
2026-06-29T17:41:54,409   adding 'mhcflurry/train_pan_allele_models_command.py'
2026-06-29T17:41:54,411   adding 'mhcflurry/train_presentation_models_command.py'
2026-06-29T17:41:54,415   adding 'mhcflurry/train_processing_models_command.py'
2026-06-29T17:41:54,417   adding 'mhcflurry/training_benchmark.py'
2026-06-29T17:41:54,418   adding 'mhcflurry/version.py'
2026-06-29T17:41:54,422   adding 'mhcflurry/workload_planning.py'
2026-06-29T17:41:54,424   adding 'mhcflurry/cli/__init__.py'
2026-06-29T17:41:54,429   adding 'mhcflurry/cli/compare_models.py'
2026-06-29T17:41:54,431   adding 'mhcflurry/cli/main.py'
2026-06-29T17:41:54,433   adding 'mhcflurry/cli/plot_model_comparison.py'
2026-06-29T17:41:54,436   adding 'mhcflurry-2.3.0rc5.dist-info/licenses/LICENSE'
2026-06-29T17:41:54,438   adding 'mhcflurry-2.3.0rc5.dist-info/METADATA'
2026-06-29T17:41:54,439   adding 'mhcflurry-2.3.0rc5.dist-info/WHEEL'
2026-06-29T17:41:54,440   adding 'mhcflurry-2.3.0rc5.dist-info/entry_points.txt'
2026-06-29T17:41:54,441   adding 'mhcflurry-2.3.0rc5.dist-info/top_level.txt'
2026-06-29T17:41:54,442   adding 'mhcflurry-2.3.0rc5.dist-info/RECORD'
2026-06-29T17:41:54,447   removing build/bdist.linux-armv7l/wheel
2026-06-29T17:41:54,571   Building wheel for mhcflurry (setup.py): finished with status 'done'
2026-06-29T17:41:54,577   Created wheel for mhcflurry: filename=mhcflurry-2.3.0rc5-py3-none-any.whl size=331160 sha256=080cbe71a47fa91963752eaf3522be64284c43acd07bff09873450d26caf3e18
2026-06-29T17:41:54,578   Stored in directory: /tmp/pip-ephem-wheel-cache-cpxhlzda/wheels/74/2c/61/e3891f596112517815e0b4338c785be14dd94a64fb8a4607e5
2026-06-29T17:41:54,592 Successfully built mhcflurry
2026-06-29T17:41:54,612 Removed build tracker: '/tmp/pip-build-tracker-8vn8bjjs'