2026-06-29T17:49:01,591 Created temporary directory: /tmp/pip-ephem-wheel-cache-p2ltma_b
2026-06-29T17:49:01,593 Created temporary directory: /tmp/pip-build-tracker-s5h6o3qj
2026-06-29T17:49:01,594 Initialized build tracking at /tmp/pip-build-tracker-s5h6o3qj
2026-06-29T17:49:01,594 Created build tracker: /tmp/pip-build-tracker-s5h6o3qj
2026-06-29T17:49:01,595 Entered build tracker: /tmp/pip-build-tracker-s5h6o3qj
2026-06-29T17:49:01,595 Created temporary directory: /tmp/pip-wheel-watwkup2
2026-06-29T17:49:01,599 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-29T17:49:01,601 Created temporary directory: /tmp/pip-ephem-wheel-cache-seuyajzh
2026-06-29T17:49:01,625 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-29T17:49:01,628 2 location(s) to search for versions of oncoref:
2026-06-29T17:49:01,628 * https://pypi.org/simple/oncoref/
2026-06-29T17:49:01,628 * https://www.piwheels.org/simple/oncoref/
2026-06-29T17:49:01,629 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/
2026-06-29T17:49:01,630 Getting page https://pypi.org/simple/oncoref/
2026-06-29T17:49:01,631 Found index url https://pypi.org/simple
2026-06-29T17:49:01,788 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json
2026-06-29T17:49:01,799   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,800   Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0
2026-06-29T17:49:01,801   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,802   Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0
2026-06-29T17:49:01,803   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,804   Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0
2026-06-29T17:49:01,805   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,806   Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1
2026-06-29T17:49:01,806   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,807   Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2
2026-06-29T17:49:01,808   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,809   Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3
2026-06-29T17:49:01,810   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,811   Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4
2026-06-29T17:49:01,811   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,812   Found link https://files.pythonhosted.org/packages/0a/e2/de65c5e1582fe009b3f640e94e6ecd5cf2f139d490750374cdad3af0e14c/oncoref-1.8.5.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.5
2026-06-29T17:49:01,813   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/71/92/3cd4d589831ccb90b12732347718e54d84097a6c780ced1810f52e3b302a/oncoref-1.8.6-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,813   Found link https://files.pythonhosted.org/packages/fe/29/0640ff92bcb51841b69a4d04ccf94a5173a18ee10c54786b959026ca4362/oncoref-1.8.6.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.6
2026-06-29T17:49:01,814   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f2/29/f869b37c956b8836b9c9b45e89ab7dad98a93270e6bd395b45a7ca5657ad/oncoref-1.8.7-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,815   Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7
2026-06-29T17:49:01,816   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,817   Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8
2026-06-29T17:49:01,817   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,818   Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9
2026-06-29T17:49:01,819   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,820   Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10
2026-06-29T17:49:01,821   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,821   Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11
2026-06-29T17:49:01,822   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,823   Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12
2026-06-29T17:49:01,823   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,824   Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13
2026-06-29T17:49:01,825   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2f/c1/703bd890ae830651eae083a090278ba8254ac89bae1c0bfefed061c3e2eb/oncoref-1.8.14-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,825   Found link https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.14
2026-06-29T17:49:01,826   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ac/42/91b2b04455fb29d40afb47dc7ee2eae30218a24c4d540d95191d31f6f98e/oncoref-1.8.15-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,827   Found link https://files.pythonhosted.org/packages/26/8a/9cb4754077d37b89ed3ee3781cffdb03040d90286aaaedacba8cb238d7c3/oncoref-1.8.15.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.15
2026-06-29T17:49:01,828   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/3f/1af50bb6d208ada32a29b7e3ed29169932b97542b48e765c1d96130b7f3d/oncoref-1.8.16-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,829   Found link https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.16
2026-06-29T17:49:01,829   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/77/d24a0f29e452b83e5d6a1bfb366c72b8407bc7505d94280ca3ba609de07e/oncoref-1.8.17-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,830   Found link https://files.pythonhosted.org/packages/c1/e7/7f753f3a4b044b3f3bc8f75b75ef24df1c9b77d3f0742ee37fc243441830/oncoref-1.8.17.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.17
2026-06-29T17:49:01,831   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/04/55/5f2c1936263bdbe9a95a7c82d673eae8724b3eb1b99d4c1c33eadfc6edf5/oncoref-1.8.18-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,832   Found link https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.18
2026-06-29T17:49:01,833   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/07/35/638b350ebd4fd975c88adb9168c250b482cf549a77381cced479cdf3923f/oncoref-1.8.19-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,833   Found link https://files.pythonhosted.org/packages/39/5a/c1460247c124e495fc20ae3e76a760ee67da5f7263531a1093ae4cdc1983/oncoref-1.8.19.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.19
2026-06-29T17:49:01,834   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/eb/2d/584fe29a9ae1a336ec8dc1dadc08e60e036de296b703c428b69aafb97ee7/oncoref-1.8.20-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,835   Found link https://files.pythonhosted.org/packages/aa/5b/9be05673420aae6512388fb70ff3b3802ca0bca46179299c93e9bdea7cb1/oncoref-1.8.20.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.20
2026-06-29T17:49:01,835   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/c2/b8/d13577ba1cd9a054203201a66d94d70c8c71156e5afaf85c557c52a8a4c8/oncoref-1.8.21-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,836   Found link https://files.pythonhosted.org/packages/f6/9d/ca143333eade742f336f48670b06ee9849c2c31d9322c5c7bb6979a191a3/oncoref-1.8.21.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.21
2026-06-29T17:49:01,837   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/59/bd/c385a7916a14b417f607eecb73034e821165e8f650435947ecf8845c5161/oncoref-1.8.22-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,838   Found link https://files.pythonhosted.org/packages/a7/cc/f9b0c987a30c7928b99e165f2bd778a677eb1433eb0802911d6678139aeb/oncoref-1.8.22.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.22
2026-06-29T17:49:01,839   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/e7/f2/ae5d03f1bf678a753916310b281effcbc4cf19a4e0e6995437966ad6ac91/oncoref-1.8.23-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,839   Found link https://files.pythonhosted.org/packages/be/8c/f6a66a8ae2ba39778734de5548a77246995f30c636670ff2ca38094ff59e/oncoref-1.8.23.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.23
2026-06-29T17:49:01,840   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/8d/ca3b2c8c719845b8c38ff91118723bb2c965155ac0a49af2ff8ceff50a56/oncoref-1.8.24-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,841   Found link https://files.pythonhosted.org/packages/62/f6/e9a386e5a93bd80d065addcc4050fefd3bb6e8b55b75ea3ba88025f95255/oncoref-1.8.24.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.24
2026-06-29T17:49:01,841   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/8d/48/dd730548afc982ad049e59c8084f8847a0c49e3d0e288d7b0c299abdad9b/oncoref-1.8.25-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:01,842   Found link https://files.pythonhosted.org/packages/fe/48/42ff82844f2c14e04799c0441651a2c9b147da3707e4924129d0352b5525/oncoref-1.8.25.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.25
2026-06-29T17:49:01,843 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/
2026-06-29T17:49:01,844 Getting page https://www.piwheels.org/simple/oncoref/
2026-06-29T17:49:01,846 Found index url https://www.piwheels.org/simple
2026-06-29T17:49:02,036 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html
2026-06-29T17:49:02,045   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.23-py3-none-any.whl#sha256=93e12c751d36e6067e12446d95075d3f1529e62cabab5ddafc06717951f4b978 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,045   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.22-py3-none-any.whl#sha256=f9f6af90f23f91ed83e606231a0b8288143792f632998acf8e42adb9b41fa572 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,046   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.21-py3-none-any.whl#sha256=ac7131b0f8f46c73d142fc08042a64e251ad3df564bfc62308d462affc18f008 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
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2026-06-29T17:49:02,048   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.17-py3-none-any.whl#sha256=5fa3e3356c1574425d42aebe7d135c933ff623b539736554634a762eeaab4a29 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,048   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.16-py3-none-any.whl#sha256=9defcd77c3360e0675a10c0b8de4a1784c19f227a985079b95e21e462de63e97 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,049   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.15-py3-none-any.whl#sha256=4dcd40c2e5c10b8f8be0d8df8489b5f05153d465eb43ddf7f9dc158bbe6b1de3 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,049   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.14-py3-none-any.whl#sha256=ac41cf84ca97c695a15f40326738750e2762e39f366bf99300777803874b26da (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,050   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.13-py3-none-any.whl#sha256=91c3e1fa8448033a913075559a2ee2b76fcbad64e20aeb7696484a9a5619dbef (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,050   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.12-py3-none-any.whl#sha256=2a0e59477b8939fc63d4a78f31b0b793fb2f49ea2aab861d853fa8479ccf9608 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,051   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.11-py3-none-any.whl#sha256=602ac0deb73739e65dfb65105b23357a94a67eb9e1faac0880bff5203ed4a818 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,052   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.10-py3-none-any.whl#sha256=3e789fd35641073e8afc8885dcef12d74a2323c2e0c8dad7b5e369392675e83a (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,053   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.9-py3-none-any.whl#sha256=2415de57054126a885d64b626bbb12657ce55d0791a686b7aba85fd8b784d399 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,053   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.8-py3-none-any.whl#sha256=f1b7351039ce534abc9d36a03b53fd9479b1629b4a6fd8698bc500162f1cd362 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,053   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.7-py3-none-any.whl#sha256=84f80af8afa25d02579e67983b74fd2e515df1ce6d0cb602ecb6808e994f8f63 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,054   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.6-py3-none-any.whl#sha256=460f281fc846e410a5992e3a87193febdfac8bf81f3e5497a5e5d72ae58176bf (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,054   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.5-py3-none-any.whl#sha256=cfedb20aa2c2593dfb010bc01a13d5b6c732ec5cf013fd70b65c71d1adb71f7e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,055   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,055   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,056   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,056   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,057   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,058   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,058   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T17:49:02,059 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/
2026-06-29T17:49:02,059 Skipping link: not a file: https://pypi.org/simple/oncoref/
2026-06-29T17:49:02,081 Given no hashes to check 1 links for project 'oncoref': discarding no candidates
2026-06-29T17:49:02,099 Collecting oncoref==1.8.24
2026-06-29T17:49:02,102   Created temporary directory: /tmp/pip-unpack-y31vc6js
2026-06-29T17:49:02,339   Downloading oncoref-1.8.24.tar.gz (1.7 MB)
2026-06-29T17:49:02,984   Added oncoref==1.8.24 from https://files.pythonhosted.org/packages/62/f6/e9a386e5a93bd80d065addcc4050fefd3bb6e8b55b75ea3ba88025f95255/oncoref-1.8.24.tar.gz to build tracker '/tmp/pip-build-tracker-s5h6o3qj'
2026-06-29T17:49:02,991   Created temporary directory: /tmp/pip-build-env-knb93hha
2026-06-29T17:49:02,995   Installing build dependencies: started
2026-06-29T17:49:02,996   Running command pip subprocess to install build dependencies
2026-06-29T17:49:04,130   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-06-29T17:49:04,600   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-29T17:49:04,623   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-29T17:49:06,426   Collecting setuptools>=61.0
2026-06-29T17:49:06,428     Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-06-29T17:49:06,441     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-06-29T17:49:06,678   Collecting wheel
2026-06-29T17:49:06,679     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-06-29T17:49:06,696     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-06-29T17:49:06,886   Collecting packaging>=24.0
2026-06-29T17:49:06,887     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-06-29T17:49:06,899     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-06-29T17:49:07,087   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-29T17:49:07,106   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-29T17:49:07,206   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-29T17:49:07,238   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-29T17:49:07,262   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-29T17:49:07,360   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-29T17:49:10,131   Installing collected packages: setuptools, packaging, wheel
2026-06-29T17:49:13,719     Creating /tmp/pip-build-env-knb93hha/overlay/local/bin
2026-06-29T17:49:13,722     changing mode of /tmp/pip-build-env-knb93hha/overlay/local/bin/wheel to 755
2026-06-29T17:49:13,743   Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0
2026-06-29T17:49:14,027   Installing build dependencies: finished with status 'done'
2026-06-29T17:49:14,035   Getting requirements to build wheel: started
2026-06-29T17:49:14,036   Running command Getting requirements to build wheel
2026-06-29T17:49:14,760   running egg_info
2026-06-29T17:49:14,766   writing oncoref.egg-info/PKG-INFO
2026-06-29T17:49:14,772   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-29T17:49:14,774   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-29T17:49:14,777   writing requirements to oncoref.egg-info/requires.txt
2026-06-29T17:49:14,778   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-29T17:49:14,814   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T17:49:14,824   reading manifest template 'MANIFEST.in'
2026-06-29T17:49:14,826   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T17:49:14,827   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T17:49:14,828   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T17:49:14,829   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T17:49:14,830   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T17:49:14,831   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T17:49:14,832   adding license file 'LICENSE'
2026-06-29T17:49:14,840   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T17:49:14,941   Getting requirements to build wheel: finished with status 'done'
2026-06-29T17:49:14,944   Created temporary directory: /tmp/pip-modern-metadata-jhpng6l5
2026-06-29T17:49:14,947   Preparing metadata (pyproject.toml): started
2026-06-29T17:49:14,948   Running command Preparing metadata (pyproject.toml)
2026-06-29T17:49:15,602   running dist_info
2026-06-29T17:49:15,613   creating /tmp/pip-modern-metadata-jhpng6l5/oncoref.egg-info
2026-06-29T17:49:15,614   writing /tmp/pip-modern-metadata-jhpng6l5/oncoref.egg-info/PKG-INFO
2026-06-29T17:49:15,620   writing dependency_links to /tmp/pip-modern-metadata-jhpng6l5/oncoref.egg-info/dependency_links.txt
2026-06-29T17:49:15,622   writing entry points to /tmp/pip-modern-metadata-jhpng6l5/oncoref.egg-info/entry_points.txt
2026-06-29T17:49:15,624   writing requirements to /tmp/pip-modern-metadata-jhpng6l5/oncoref.egg-info/requires.txt
2026-06-29T17:49:15,625   writing top-level names to /tmp/pip-modern-metadata-jhpng6l5/oncoref.egg-info/top_level.txt
2026-06-29T17:49:15,627   writing manifest file '/tmp/pip-modern-metadata-jhpng6l5/oncoref.egg-info/SOURCES.txt'
2026-06-29T17:49:15,660   reading manifest file '/tmp/pip-modern-metadata-jhpng6l5/oncoref.egg-info/SOURCES.txt'
2026-06-29T17:49:15,662   reading manifest template 'MANIFEST.in'
2026-06-29T17:49:15,663   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T17:49:15,664   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T17:49:15,665   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T17:49:15,666   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T17:49:15,667   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T17:49:15,668   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T17:49:15,669   adding license file 'LICENSE'
2026-06-29T17:49:15,675   writing manifest file '/tmp/pip-modern-metadata-jhpng6l5/oncoref.egg-info/SOURCES.txt'
2026-06-29T17:49:15,676   creating '/tmp/pip-modern-metadata-jhpng6l5/oncoref-1.8.24.dist-info'
2026-06-29T17:49:15,806   Preparing metadata (pyproject.toml): finished with status 'done'
2026-06-29T17:49:15,811   Source in /tmp/pip-wheel-watwkup2/oncoref_253428e021b1448a9ebb5ccf615f0de0 has version 1.8.24, which satisfies requirement oncoref==1.8.24 from https://files.pythonhosted.org/packages/62/f6/e9a386e5a93bd80d065addcc4050fefd3bb6e8b55b75ea3ba88025f95255/oncoref-1.8.24.tar.gz
2026-06-29T17:49:15,812   Removed oncoref==1.8.24 from https://files.pythonhosted.org/packages/62/f6/e9a386e5a93bd80d065addcc4050fefd3bb6e8b55b75ea3ba88025f95255/oncoref-1.8.24.tar.gz from build tracker '/tmp/pip-build-tracker-s5h6o3qj'
2026-06-29T17:49:15,818 Created temporary directory: /tmp/pip-unpack-9lwwgnb7
2026-06-29T17:49:15,819 Building wheels for collected packages: oncoref
2026-06-29T17:49:15,824   Created temporary directory: /tmp/pip-wheel-e6o3uni5
2026-06-29T17:49:15,824   Destination directory: /tmp/pip-wheel-e6o3uni5
2026-06-29T17:49:15,827   Building wheel for oncoref (pyproject.toml): started
2026-06-29T17:49:15,828   Running command Building wheel for oncoref (pyproject.toml)
2026-06-29T17:49:16,452   running bdist_wheel
2026-06-29T17:49:16,469   running build
2026-06-29T17:49:16,470   running build_py
2026-06-29T17:49:16,477   creating build/lib/oncoref
2026-06-29T17:49:16,479   copying oncoref/cta.py -> build/lib/oncoref
2026-06-29T17:49:16,482   copying oncoref/cohorts.py -> build/lib/oncoref
2026-06-29T17:49:16,483   copying oncoref/expression.py -> build/lib/oncoref
2026-06-29T17:49:16,487   copying oncoref/response_signatures.py -> build/lib/oncoref
2026-06-29T17:49:16,489   copying oncoref/data_bundle.py -> build/lib/oncoref
2026-06-29T17:49:16,492   copying oncoref/tmb.py -> build/lib/oncoref
2026-06-29T17:49:16,494   copying oncoref/cta_tissues.py -> build/lib/oncoref
2026-06-29T17:49:16,496   copying oncoref/gene_ids.py -> build/lib/oncoref
2026-06-29T17:49:16,498   copying oncoref/source_matrices.py -> build/lib/oncoref
2026-06-29T17:49:16,500   copying oncoref/gene_qc.py -> build/lib/oncoref
2026-06-29T17:49:16,503   copying oncoref/cli.py -> build/lib/oncoref
2026-06-29T17:49:16,505   copying oncoref/peptides.py -> build/lib/oncoref
2026-06-29T17:49:16,508   copying oncoref/expression_builders.py -> build/lib/oncoref
2026-06-29T17:49:16,510   copying oncoref/proteoforms.py -> build/lib/oncoref
2026-06-29T17:49:16,513   copying oncoref/samples.py -> build/lib/oncoref
2026-06-29T17:49:16,515   copying oncoref/cancer_genes.py -> build/lib/oncoref
2026-06-29T17:49:16,517   copying oncoref/expression_engine.py -> build/lib/oncoref
2026-06-29T17:49:16,520   copying oncoref/ici_response.py -> build/lib/oncoref
2026-06-29T17:49:16,523   copying oncoref/reference_data.py -> build/lib/oncoref
2026-06-29T17:49:16,525   copying oncoref/normalization.py -> build/lib/oncoref
2026-06-29T17:49:16,528   copying oncoref/apd1.py -> build/lib/oncoref
2026-06-29T17:49:16,530   copying oncoref/catalog.py -> build/lib/oncoref
2026-06-29T17:49:16,532   copying oncoref/antigen_coverage.py -> build/lib/oncoref
2026-06-29T17:49:16,534   copying oncoref/plots.py -> build/lib/oncoref
2026-06-29T17:49:16,537   copying oncoref/data_manifest.py -> build/lib/oncoref
2026-06-29T17:49:16,540   copying oncoref/hpa.py -> build/lib/oncoref
2026-06-29T17:49:16,542   copying oncoref/genome.py -> build/lib/oncoref
2026-06-29T17:49:16,546   copying oncoref/incidence.py -> build/lib/oncoref
2026-06-29T17:49:16,548   copying oncoref/cancer_types.py -> build/lib/oncoref
2026-06-29T17:49:16,551   copying oncoref/cta_curation_plots.py -> build/lib/oncoref
2026-06-29T17:49:16,553   copying oncoref/load_dataset.py -> build/lib/oncoref
2026-06-29T17:49:16,555   copying oncoref/cta_regen.py -> build/lib/oncoref
2026-06-29T17:49:16,558   copying oncoref/__init__.py -> build/lib/oncoref
2026-06-29T17:49:16,561   copying oncoref/cta_coverage.py -> build/lib/oncoref
2026-06-29T17:49:16,563   copying oncoref/fusions.py -> build/lib/oncoref
2026-06-29T17:49:16,565   copying oncoref/coverage.py -> build/lib/oncoref
2026-06-29T17:49:16,567   copying oncoref/version.py -> build/lib/oncoref
2026-06-29T17:49:16,569   copying oncoref/cancer_ontology.py -> build/lib/oncoref
2026-06-29T17:49:16,571   copying oncoref/ici.py -> build/lib/oncoref
2026-06-29T17:49:16,574   copying oncoref/cta_peptides.py -> build/lib/oncoref
2026-06-29T17:49:16,576   copying oncoref/expression_registry.py -> build/lib/oncoref
2026-06-29T17:49:16,578   copying oncoref/gene_families.py -> build/lib/oncoref
2026-06-29T17:49:16,592   creating build/lib/oncoref/data
2026-06-29T17:49:16,594   copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,596   copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,598   copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,601   copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,603   copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,606   copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,608   copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,611   copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,616   copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,620   copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,622   copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,624   copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,628   copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,630   copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,633   copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,635   copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,637   copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,639   copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,642   copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,644   copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,646   copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,649   copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,652   copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,654   copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,657   copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,661   copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,664   copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,667   copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,669   copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,671   copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,675   copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,678   copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,681   copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,683   copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,686   copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,688   copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,691   copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,693   copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,696   copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,698   copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,700   copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,702   copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,704   copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,706   copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,714   copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,716   copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,719   copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,721   copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,723   copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,725   copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,731   copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,734   copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,736   copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data
2026-06-29T17:49:16,738   copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data
2026-06-29T17:49:16,751   copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data
2026-06-29T17:49:16,763   copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data
2026-06-29T17:49:16,772   copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data
2026-06-29T17:49:16,786   installing to build/bdist.linux-armv7l/wheel
2026-06-29T17:49:16,787   running install
2026-06-29T17:49:16,811   running install_lib
2026-06-29T17:49:16,816   creating build/bdist.linux-armv7l/wheel
2026-06-29T17:49:16,819   creating build/bdist.linux-armv7l/wheel/oncoref
2026-06-29T17:49:16,821   copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,824   copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,826   copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,830   copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,833   copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,836   copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,838   copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,840   copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,843   copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,846   copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,848   copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,851   copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,854   copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,857   copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,859   copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,861   copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,864   copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,867   copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,869   copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,872   copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,875   copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,877   copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,880   copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,882   copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,886   copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,889   copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,891   copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,894   copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,896   copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,900   copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:16,904   creating build/bdist.linux-armv7l/wheel/oncoref/data
2026-06-29T17:49:16,905   copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,908   copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,910   copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,913   copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,915   copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,919   copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,922   copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,925   copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,927   copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,933   copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,938   copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,941   copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,943   copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,946   copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,949   copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,962   copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,965   copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,967   copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,969   copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,972   copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,982   copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,985   copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,987   copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,989   copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,992   copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,995   copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:16,997   copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,000   copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,005   copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,008   copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,011   copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,013   copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,015   copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,019   copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,022   copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,030   copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,033   copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,035   copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,037   copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,040   copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,044   copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,046   copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,048   copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,050   copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,052   copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,054   copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,056   copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,058   copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,067   copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,068   copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,070   copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,072   copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,074   copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,076   copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,082   copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,085   copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,086   copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T17:49:17,088   copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,090   copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,093   copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,095   copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,097   copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,099   copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,101   copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,103   copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,105   copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,107   copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,109   copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,111   copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T17:49:17,114   running install_egg_info
2026-06-29T17:49:17,123   running egg_info
2026-06-29T17:49:17,128   writing oncoref.egg-info/PKG-INFO
2026-06-29T17:49:17,134   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-29T17:49:17,136   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-29T17:49:17,139   writing requirements to oncoref.egg-info/requires.txt
2026-06-29T17:49:17,141   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-29T17:49:17,163   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T17:49:17,172   reading manifest template 'MANIFEST.in'
2026-06-29T17:49:17,174   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T17:49:17,175   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T17:49:17,176   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T17:49:17,177   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T17:49:17,178   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T17:49:17,179   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T17:49:17,179   adding license file 'LICENSE'
2026-06-29T17:49:17,187   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T17:49:17,189   Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.24-py3.11.egg-info
2026-06-29T17:49:17,201   running install_scripts
2026-06-29T17:49:17,214   creating build/bdist.linux-armv7l/wheel/oncoref-1.8.24.dist-info/WHEEL
2026-06-29T17:49:17,216   creating '/tmp/pip-wheel-e6o3uni5/.tmp-b9bqusjg/oncoref-1.8.24-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-29T17:49:17,220   adding 'oncoref/__init__.py'
2026-06-29T17:49:17,222   adding 'oncoref/antigen_coverage.py'
2026-06-29T17:49:17,223   adding 'oncoref/apd1.py'
2026-06-29T17:49:17,225   adding 'oncoref/cancer_genes.py'
2026-06-29T17:49:17,226   adding 'oncoref/cancer_ontology.py'
2026-06-29T17:49:17,233   adding 'oncoref/cancer_types.py'
2026-06-29T17:49:17,236   adding 'oncoref/catalog.py'
2026-06-29T17:49:17,238   adding 'oncoref/cli.py'
2026-06-29T17:49:17,240   adding 'oncoref/cohorts.py'
2026-06-29T17:49:17,243   adding 'oncoref/coverage.py'
2026-06-29T17:49:17,246   adding 'oncoref/cta.py'
2026-06-29T17:49:17,247   adding 'oncoref/cta_coverage.py'
2026-06-29T17:49:17,249   adding 'oncoref/cta_curation_plots.py'
2026-06-29T17:49:17,250   adding 'oncoref/cta_peptides.py'
2026-06-29T17:49:17,253   adding 'oncoref/cta_regen.py'
2026-06-29T17:49:17,255   adding 'oncoref/cta_tissues.py'
2026-06-29T17:49:17,258   adding 'oncoref/data_bundle.py'
2026-06-29T17:49:17,260   adding 'oncoref/data_manifest.py'
2026-06-29T17:49:17,270   adding 'oncoref/expression.py'
2026-06-29T17:49:17,273   adding 'oncoref/expression_builders.py'
2026-06-29T17:49:17,276   adding 'oncoref/expression_engine.py'
2026-06-29T17:49:17,278   adding 'oncoref/expression_registry.py'
2026-06-29T17:49:17,280   adding 'oncoref/fusions.py'
2026-06-29T17:49:17,282   adding 'oncoref/gene_families.py'
2026-06-29T17:49:17,284   adding 'oncoref/gene_ids.py'
2026-06-29T17:49:17,286   adding 'oncoref/gene_qc.py'
2026-06-29T17:49:17,288   adding 'oncoref/genome.py'
2026-06-29T17:49:17,290   adding 'oncoref/hpa.py'
2026-06-29T17:49:17,294   adding 'oncoref/ici.py'
2026-06-29T17:49:17,295   adding 'oncoref/ici_response.py'
2026-06-29T17:49:17,297   adding 'oncoref/incidence.py'
2026-06-29T17:49:17,299   adding 'oncoref/load_dataset.py'
2026-06-29T17:49:17,303   adding 'oncoref/normalization.py'
2026-06-29T17:49:17,305   adding 'oncoref/peptides.py'
2026-06-29T17:49:17,312   adding 'oncoref/plots.py'
2026-06-29T17:49:17,315   adding 'oncoref/proteoforms.py'
2026-06-29T17:49:17,317   adding 'oncoref/reference_data.py'
2026-06-29T17:49:17,319   adding 'oncoref/response_signatures.py'
2026-06-29T17:49:17,320   adding 'oncoref/samples.py'
2026-06-29T17:49:17,322   adding 'oncoref/source_matrices.py'
2026-06-29T17:49:17,323   adding 'oncoref/tmb.py'
2026-06-29T17:49:17,325   adding 'oncoref/version.py'
2026-06-29T17:49:17,328   adding 'oncoref/data/cancer-apd1-response.csv'
2026-06-29T17:49:17,330   adding 'oncoref/data/cancer-code-burden-map.csv'
2026-06-29T17:49:17,331   adding 'oncoref/data/cancer-cohort-aggregates.csv'
2026-06-29T17:49:17,336   adding 'oncoref/data/cancer-driver-genes.csv'
2026-06-29T17:49:17,338   adding 'oncoref/data/cancer-driver-variants.csv'
2026-06-29T17:49:17,341   adding 'oncoref/data/cancer-expression-source-candidates.csv'
2026-06-29T17:49:17,342   adding 'oncoref/data/cancer-frameshift-burden.csv'
2026-06-29T17:49:17,345   adding 'oncoref/data/cancer-fusions.csv'
2026-06-29T17:49:17,362   adding 'oncoref/data/cancer-ici-response-estimates.csv'
2026-06-29T17:49:17,366   adding 'oncoref/data/cancer-ici-response.csv'
2026-06-29T17:49:17,368   adding 'oncoref/data/cancer-incidence-mortality.csv'
2026-06-29T17:49:17,383   adding 'oncoref/data/cancer-key-genes.csv'
2026-06-29T17:49:17,384   adding 'oncoref/data/cancer-lineage-group-overrides.csv'
2026-06-29T17:49:17,386   adding 'oncoref/data/cancer-lineage-groups.csv'
2026-06-29T17:49:17,387   adding 'oncoref/data/cancer-normal-tissue-map.csv'
2026-06-29T17:49:17,416   adding 'oncoref/data/cancer-reference-expression-samples.csv.gz'
2026-06-29T17:49:17,419   adding 'oncoref/data/cancer-response-signatures.csv'
2026-06-29T17:49:17,420   adding 'oncoref/data/cancer-subtype-groupings.csv'
2026-06-29T17:49:17,432   adding 'oncoref/data/cancer-testis-antigens.csv'
2026-06-29T17:49:17,434   adding 'oncoref/data/cancer-tmb.csv'
2026-06-29T17:49:17,437   adding 'oncoref/data/cancer-type-genes.csv'
2026-06-29T17:49:17,441   adding 'oncoref/data/cancer-type-registry.csv'
2026-06-29T17:49:17,442   adding 'oncoref/data/cancer-viral-antigens.csv'
2026-06-29T17:49:17,495   adding 'oncoref/data/canonical-gene-space.csv.gz'
2026-06-29T17:49:17,500   adding 'oncoref/data/cdna-identical-gene-groups.csv'
2026-06-29T17:49:17,504   adding 'oncoref/data/censored-gene-reference-tpm.csv'
2026-06-29T17:49:17,506   adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv'
2026-06-29T17:49:17,516   adding 'oncoref/data/clean-tpm-censored-genes.csv'
2026-06-29T17:49:17,518   adding 'oncoref/data/cohort-registry.csv'
2026-06-29T17:49:17,520   adding 'oncoref/data/cta-candidate-references.csv'
2026-06-29T17:49:17,521   adding 'oncoref/data/cta-ihc-unreliable.csv'
2026-06-29T17:49:17,522   adding 'oncoref/data/degenerate-subtype-pairs.csv'
2026-06-29T17:49:17,523   adding 'oncoref/data/disease-state-rules.csv'
2026-06-29T17:49:17,550   adding 'oncoref/data/ensembl-id-aliases.csv'
2026-06-29T17:49:17,556   adding 'oncoref/data/expression_sources.yaml'
2026-06-29T17:49:17,558   adding 'oncoref/data/extra-tx-mappings.csv'
2026-06-29T17:49:17,559   adding 'oncoref/data/family-burden-map.csv'
2026-06-29T17:49:17,561   adding 'oncoref/data/fusion-expression-effects.csv'
2026-06-29T17:49:17,562   adding 'oncoref/data/fusion-surrogate-expression.csv'
2026-06-29T17:49:17,563   adding 'oncoref/data/hemoglobin-genes.csv'
2026-06-29T17:49:17,565   adding 'oncoref/data/histone-genes.csv'
2026-06-29T17:49:17,566   adding 'oncoref/data/housekeeping-genes.csv'
2026-06-29T17:49:17,568   adding 'oncoref/data/mitochondrial-genes.csv'
2026-06-29T17:49:17,569   adding 'oncoref/data/narrative-gene-sets.csv'
2026-06-29T17:49:17,609   adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz'
2026-06-29T17:49:17,613   adding 'oncoref/data/nuclear-retained-lncrnas.csv'
2026-06-29T17:49:17,614   adding 'oncoref/data/numt-pseudogenes.csv'
2026-06-29T17:49:17,616   adding 'oncoref/data/proteoform-collapse-overrides.csv'
2026-06-29T17:49:17,618   adding 'oncoref/data/proteoform-groups-genome.csv'
2026-06-29T17:49:17,620   adding 'oncoref/data/proteoform-groups.csv'
2026-06-29T17:49:17,621   adding 'oncoref/data/rare-cancer-fusion-rules.csv'
2026-06-29T17:49:17,623   adding 'oncoref/data/ribosomal-protein-genes.csv'
2026-06-29T17:49:17,629   adding 'oncoref/data/ribosomal-protein-pseudogenes.csv'
2026-06-29T17:49:17,632   adding 'oncoref/data/rrna-and-pseudogenes.csv'
2026-06-29T17:49:17,650   adding 'oncoref/data/small-noncoding-rnas.csv'
2026-06-29T17:49:17,653   adding 'oncoref/data/source-matrices.csv'
2026-06-29T17:49:17,654   adding 'oncoref/data/tissue-burden-map.csv'
2026-06-29T17:49:17,658   adding 'oncoref-1.8.24.dist-info/licenses/LICENSE'
2026-06-29T17:49:17,660   adding 'oncoref-1.8.24.dist-info/METADATA'
2026-06-29T17:49:17,661   adding 'oncoref-1.8.24.dist-info/WHEEL'
2026-06-29T17:49:17,662   adding 'oncoref-1.8.24.dist-info/entry_points.txt'
2026-06-29T17:49:17,663   adding 'oncoref-1.8.24.dist-info/top_level.txt'
2026-06-29T17:49:17,665   adding 'oncoref-1.8.24.dist-info/RECORD'
2026-06-29T17:49:17,691   removing build/bdist.linux-armv7l/wheel
2026-06-29T17:49:17,816   Building wheel for oncoref (pyproject.toml): finished with status 'done'
2026-06-29T17:49:17,856   Created wheel for oncoref: filename=oncoref-1.8.24-py3-none-any.whl size=1674674 sha256=37eddc72a25836c04689e807b2e937964e7758be69a3c63ef6f43b079edd274b
2026-06-29T17:49:17,857   Stored in directory: /tmp/pip-ephem-wheel-cache-seuyajzh/wheels/30/27/f3/0c67b4de752dbf9201947fae1ffc3ad061162a3a125d38abfb
2026-06-29T17:49:17,873 Successfully built oncoref
2026-06-29T17:49:17,919 Removed build tracker: '/tmp/pip-build-tracker-s5h6o3qj'