2026-06-29T18:54:09,730 Created temporary directory: /tmp/pip-ephem-wheel-cache-olub_l5r 2026-06-29T18:54:09,732 Created temporary directory: /tmp/pip-build-tracker-ez8iu4ga 2026-06-29T18:54:09,732 Initialized build tracking at /tmp/pip-build-tracker-ez8iu4ga 2026-06-29T18:54:09,733 Created build tracker: /tmp/pip-build-tracker-ez8iu4ga 2026-06-29T18:54:09,733 Entered build tracker: /tmp/pip-build-tracker-ez8iu4ga 2026-06-29T18:54:09,734 Created temporary directory: /tmp/pip-wheel-lv0aheh0 2026-06-29T18:54:09,737 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-06-29T18:54:09,739 Created temporary directory: /tmp/pip-ephem-wheel-cache-qjzgycuo 2026-06-29T18:54:09,762 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-06-29T18:54:09,766 2 location(s) to search for versions of mhcflurry: 2026-06-29T18:54:09,766 * https://pypi.org/simple/mhcflurry/ 2026-06-29T18:54:09,766 * https://www.piwheels.org/simple/mhcflurry/ 2026-06-29T18:54:09,766 Fetching project page and analyzing links: https://pypi.org/simple/mhcflurry/ 2026-06-29T18:54:09,767 Getting page https://pypi.org/simple/mhcflurry/ 2026-06-29T18:54:09,769 Found index url https://pypi.org/simple 2026-06-29T18:54:09,999 Fetched page https://pypi.org/simple/mhcflurry/ as application/vnd.pypi.simple.v1+json 2026-06-29T18:54:10,013 Found link https://files.pythonhosted.org/packages/e5/cb/3fa7a07b33cf3df2797a7579428262307c08b553fdedfa14daa21ba4c789/mhcflurry-0.0.8.tar.gz (from 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https://files.pythonhosted.org/packages/9e/f7/a465e7fef6c06fb649f5334550a73b4db5f387e7dbd3517a778d1c3fe923/mhcflurry-2.2.1-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,052 Found link https://files.pythonhosted.org/packages/dd/7f/9001cdc0a1dabfa9dac11a53520eb84f1f6b1167c49390bf332864367dcf/mhcflurry-2.2.1.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.2.1 2026-06-29T18:54:10,052 Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/fc/9e/fafc68780fd7c70165d8efe874734b9d61a6582502ebb47d7461db5add50/mhcflurry-2.3.0rc1-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,053 Found link https://files.pythonhosted.org/packages/bf/b6/625b0fbd70a6316014842567961bff3ed2a878b2f04504bffa226ee6db7f/mhcflurry-2.3.0rc1.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.3.0rc1 2026-06-29T18:54:10,054 Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/3f/9d/dd2829eafd8b45eb6dca75e8904977a36de72187624ff5f192daa2bd7f05/mhcflurry-2.3.0rc2-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,055 Found link https://files.pythonhosted.org/packages/80/02/5fca0eca12fd5ffd415dcf4b6cd497202f0c4401ee48354182e1e012de7b/mhcflurry-2.3.0rc2.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.3.0rc2 2026-06-29T18:54:10,056 Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/a7/c9/a3f0e1fafc58a6cfb1dbb6d8ae9d46e37c34623b5ab22dafeb77bf4d2a04/mhcflurry-2.3.0rc3-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,057 Found link https://files.pythonhosted.org/packages/ad/f6/b2cde64f2146591b921c6f1cb0f4022443ac2923939712753c1f608baf2a/mhcflurry-2.3.0rc3.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.3.0rc3 2026-06-29T18:54:10,057 Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/e1/df/462c1a9c2f825c8ece18d3db27b62f36995202a11784fc11dd0227a8aa57/mhcflurry-2.3.0rc4-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,058 Found link https://files.pythonhosted.org/packages/00/0e/39a708df446596d59fc3fedd4ae536c07bca41136108216540dd1e8fb320/mhcflurry-2.3.0rc4.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.3.0rc4 2026-06-29T18:54:10,059 Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/8d/6d/20c845374ac8130150a36b5ab1d188300e50f186116c3ef8f93b6d767a81/mhcflurry-2.3.0rc5-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,060 Found link https://files.pythonhosted.org/packages/d5/fb/cdbf883562c5b98f8b7e9016f6bc9f4e0e0606847dace3a31b4062cd9ab0/mhcflurry-2.3.0rc5.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.3.0rc5 2026-06-29T18:54:10,060 Skipping link: No binaries permitted for mhcflurry: https://files.pythonhosted.org/packages/c0/22/a21c7c03c87b93f7ee7b5bc2a210816cca219c526c3cd1a7089085c6b62e/mhcflurry-2.3.0rc6-py3-none-any.whl (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,061 Found link https://files.pythonhosted.org/packages/49/b8/ffbdcb1984c2fa54115487fc445d3ac993fecac9d8776635f0434c9edc97/mhcflurry-2.3.0rc6.tar.gz (from https://pypi.org/simple/mhcflurry/) (requires-python:>=3.10), version: 2.3.0rc6 2026-06-29T18:54:10,062 Fetching project page and analyzing links: https://www.piwheels.org/simple/mhcflurry/ 2026-06-29T18:54:10,063 Getting page https://www.piwheels.org/simple/mhcflurry/ 2026-06-29T18:54:10,064 Found index url https://www.piwheels.org/simple 2026-06-29T18:54:10,252 Fetched page https://www.piwheels.org/simple/mhcflurry/ as text/html 2026-06-29T18:54:10,265 Skipping link: No binaries permitted for mhcflurry: https://www.piwheels.org/simple/mhcflurry/mhcflurry-2.3.0rc5-py3-none-any.whl#sha256=080cbe71a47fa91963752eaf3522be64284c43acd07bff09873450d26caf3e18 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,265 Skipping link: No binaries permitted for mhcflurry: https://www.piwheels.org/simple/mhcflurry/mhcflurry-2.3.0rc4-py3-none-any.whl#sha256=b5d87a2d595c6ac45f9fe551a083d4e12326ac798edd7b00bb9a7b72ac908496 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,266 Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.3.0rc3-py3-none-any.whl#sha256=c4668d591a6fac61a98ea8ca546f91f08bcad8446604515f4f32ecfe811151ab (from 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2026-06-29T18:54:10,269 Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.2.0-py3-none-any.whl#sha256=67a4acd0ed1669f780cf6be5d3a0834760d23bda891dd9e2f6606cb205dfa511 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,269 Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.2.0rc3-py3-none-any.whl#sha256=66a453296d02a43b7b69f6d696ea175f460d88734e2722db73a7e37ddf278cd8 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,269 Skipping link: No binaries permitted for mhcflurry: https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-2.2.0rc2-py3-none-any.whl#sha256=e2be5323021a7649ee77727ad8cebda0f00631e85ba9571d5f742b17d3c74a30 (from https://www.piwheels.org/simple/mhcflurry/) (requires-python:>=3.10) 2026-06-29T18:54:10,270 Skipping link: No binaries permitted for mhcflurry: 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https://archive1.piwheels.org/simple/mhcflurry/mhcflurry-0.0.8-py3-none-any.whl#sha256=ea90be84eebf1f57a039385abb709d3e83fe73e559569c60cace0b87fc272c22 (from https://www.piwheels.org/simple/mhcflurry/) 2026-06-29T18:54:10,287 Skipping link: not a file: https://www.piwheels.org/simple/mhcflurry/ 2026-06-29T18:54:10,288 Skipping link: not a file: https://pypi.org/simple/mhcflurry/ 2026-06-29T18:54:10,312 Given no hashes to check 1 links for project 'mhcflurry': discarding no candidates 2026-06-29T18:54:10,329 Collecting mhcflurry==2.3.0rc6 2026-06-29T18:54:10,332 Created temporary directory: /tmp/pip-unpack-itky6z7o 2026-06-29T18:54:10,563 Downloading mhcflurry-2.3.0rc6.tar.gz (435 kB) 2026-06-29T18:54:10,963 Added mhcflurry==2.3.0rc6 from https://files.pythonhosted.org/packages/49/b8/ffbdcb1984c2fa54115487fc445d3ac993fecac9d8776635f0434c9edc97/mhcflurry-2.3.0rc6.tar.gz to build tracker '/tmp/pip-build-tracker-ez8iu4ga' 2026-06-29T18:54:10,965 Running setup.py (path:/tmp/pip-wheel-lv0aheh0/mhcflurry_9cd39b7aa29b4aec8e9b3221578173ce/setup.py) egg_info for package mhcflurry 2026-06-29T18:54:10,966 Created temporary directory: /tmp/pip-pip-egg-info-cx7xpmvs 2026-06-29T18:54:10,966 Preparing metadata (setup.py): started 2026-06-29T18:54:10,967 Running command python setup.py egg_info 2026-06-29T18:54:11,880 running egg_info 2026-06-29T18:54:11,909 creating /tmp/pip-pip-egg-info-cx7xpmvs/mhcflurry.egg-info 2026-06-29T18:54:11,910 writing /tmp/pip-pip-egg-info-cx7xpmvs/mhcflurry.egg-info/PKG-INFO 2026-06-29T18:54:11,914 writing dependency_links to /tmp/pip-pip-egg-info-cx7xpmvs/mhcflurry.egg-info/dependency_links.txt 2026-06-29T18:54:11,916 writing entry points to /tmp/pip-pip-egg-info-cx7xpmvs/mhcflurry.egg-info/entry_points.txt 2026-06-29T18:54:11,918 writing requirements to /tmp/pip-pip-egg-info-cx7xpmvs/mhcflurry.egg-info/requires.txt 2026-06-29T18:54:11,919 writing top-level names to /tmp/pip-pip-egg-info-cx7xpmvs/mhcflurry.egg-info/top_level.txt 2026-06-29T18:54:11,921 writing manifest file '/tmp/pip-pip-egg-info-cx7xpmvs/mhcflurry.egg-info/SOURCES.txt' 2026-06-29T18:54:12,017 reading manifest file '/tmp/pip-pip-egg-info-cx7xpmvs/mhcflurry.egg-info/SOURCES.txt' 2026-06-29T18:54:12,019 adding license file 'LICENSE' 2026-06-29T18:54:12,025 writing manifest file '/tmp/pip-pip-egg-info-cx7xpmvs/mhcflurry.egg-info/SOURCES.txt' 2026-06-29T18:54:12,134 Preparing metadata (setup.py): finished with status 'done' 2026-06-29T18:54:12,138 Source in /tmp/pip-wheel-lv0aheh0/mhcflurry_9cd39b7aa29b4aec8e9b3221578173ce has version 2.3.0rc6, which satisfies requirement mhcflurry==2.3.0rc6 from https://files.pythonhosted.org/packages/49/b8/ffbdcb1984c2fa54115487fc445d3ac993fecac9d8776635f0434c9edc97/mhcflurry-2.3.0rc6.tar.gz 2026-06-29T18:54:12,139 Removed mhcflurry==2.3.0rc6 from https://files.pythonhosted.org/packages/49/b8/ffbdcb1984c2fa54115487fc445d3ac993fecac9d8776635f0434c9edc97/mhcflurry-2.3.0rc6.tar.gz from build tracker '/tmp/pip-build-tracker-ez8iu4ga' 2026-06-29T18:54:12,146 Created temporary directory: /tmp/pip-unpack-v04er9rq 2026-06-29T18:54:12,147 Building wheels for collected packages: mhcflurry 2026-06-29T18:54:12,151 Created temporary directory: /tmp/pip-wheel-rospg_up 2026-06-29T18:54:12,151 Building wheel for mhcflurry (setup.py): started 2026-06-29T18:54:12,153 Destination directory: /tmp/pip-wheel-rospg_up 2026-06-29T18:54:12,153 Running command python setup.py bdist_wheel 2026-06-29T18:54:12,999 running bdist_wheel 2026-06-29T18:54:13,142 running build 2026-06-29T18:54:13,143 running build_py 2026-06-29T18:54:13,175 creating build/lib/mhcflurry 2026-06-29T18:54:13,177 copying mhcflurry/proteome_decoys.py -> build/lib/mhcflurry 2026-06-29T18:54:13,179 copying mhcflurry/flanking_encoding.py -> build/lib/mhcflurry 2026-06-29T18:54:13,182 copying mhcflurry/downloads_command.py -> build/lib/mhcflurry 2026-06-29T18:54:13,184 copying mhcflurry/regression_target.py -> build/lib/mhcflurry 2026-06-29T18:54:13,186 copying mhcflurry/peptide_reference.py -> build/lib/mhcflurry 2026-06-29T18:54:13,189 copying mhcflurry/pytorch_losses.py -> build/lib/mhcflurry 2026-06-29T18:54:13,191 copying mhcflurry/workload_planning.py -> build/lib/mhcflurry 2026-06-29T18:54:13,194 copying mhcflurry/version.py -> build/lib/mhcflurry 2026-06-29T18:54:13,195 copying mhcflurry/common.py -> build/lib/mhcflurry 2026-06-29T18:54:13,198 copying mhcflurry/class1_affinity_training_data.py -> build/lib/mhcflurry 2026-06-29T18:54:13,201 copying mhcflurry/hyperparameters.py -> build/lib/mhcflurry 2026-06-29T18:54:13,203 copying mhcflurry/scoring.py -> build/lib/mhcflurry 2026-06-29T18:54:13,205 copying mhcflurry/class1_processing_predictor.py -> build/lib/mhcflurry 2026-06-29T18:54:13,207 copying mhcflurry/train_pan_allele_models_command.py -> build/lib/mhcflurry 2026-06-29T18:54:13,210 copying mhcflurry/ensemble_centrality.py -> build/lib/mhcflurry 2026-06-29T18:54:13,212 copying mhcflurry/cluster_parallelism.py -> build/lib/mhcflurry 2026-06-29T18:54:13,214 copying mhcflurry/calibrate_percentile_ranks_command.py -> build/lib/mhcflurry 2026-06-29T18:54:13,217 copying mhcflurry/train_allele_specific_models_command.py -> build/lib/mhcflurry 2026-06-29T18:54:13,220 copying mhcflurry/fasta.py -> build/lib/mhcflurry 2026-06-29T18:54:13,222 copying mhcflurry/select_processing_models_command.py -> build/lib/mhcflurry 2026-06-29T18:54:13,224 copying mhcflurry/encodable_sequences.py -> build/lib/mhcflurry 2026-06-29T18:54:13,227 copying mhcflurry/train_processing_models_command.py -> build/lib/mhcflurry 2026-06-29T18:54:13,230 copying mhcflurry/downloads.py -> build/lib/mhcflurry 2026-06-29T18:54:13,232 copying mhcflurry/amino_acid.py -> build/lib/mhcflurry 2026-06-29T18:54:13,235 copying mhcflurry/motif_summary.py -> build/lib/mhcflurry 2026-06-29T18:54:13,237 copying mhcflurry/percent_rank_transform.py -> build/lib/mhcflurry 2026-06-29T18:54:13,240 copying mhcflurry/select_pan_allele_models_command.py -> build/lib/mhcflurry 2026-06-29T18:54:13,242 copying mhcflurry/class1_presentation_predictor.py -> build/lib/mhcflurry 2026-06-29T18:54:13,245 copying mhcflurry/custom_loss.py -> build/lib/mhcflurry 2026-06-29T18:54:13,247 copying mhcflurry/training_benchmark.py -> build/lib/mhcflurry 2026-06-29T18:54:13,250 copying mhcflurry/class1_processing_neural_network.py -> build/lib/mhcflurry 2026-06-29T18:54:13,253 copying mhcflurry/class1_neural_network.py -> build/lib/mhcflurry 2026-06-29T18:54:13,259 copying mhcflurry/predict_command.py -> build/lib/mhcflurry 2026-06-29T18:54:13,261 copying mhcflurry/cluster_worker_entry_point.py -> build/lib/mhcflurry 2026-06-29T18:54:13,263 copying mhcflurry/local_parallelism.py -> build/lib/mhcflurry 2026-06-29T18:54:13,266 copying mhcflurry/__init__.py -> build/lib/mhcflurry 2026-06-29T18:54:13,268 copying mhcflurry/torch_training_loop.py -> build/lib/mhcflurry 2026-06-29T18:54:13,270 copying mhcflurry/select_allele_specific_models_command.py -> build/lib/mhcflurry 2026-06-29T18:54:13,273 copying mhcflurry/device_footprint.py -> build/lib/mhcflurry 2026-06-29T18:54:13,275 copying mhcflurry/pytorch_layers.py -> build/lib/mhcflurry 2026-06-29T18:54:13,278 copying mhcflurry/class1_affinity_predictor.py -> build/lib/mhcflurry 2026-06-29T18:54:13,282 copying mhcflurry/predict_scan_command.py -> build/lib/mhcflurry 2026-06-29T18:54:13,284 copying mhcflurry/data_dependent_weights_initialization.py -> build/lib/mhcflurry 2026-06-29T18:54:13,287 copying mhcflurry/train_presentation_models_command.py -> build/lib/mhcflurry 2026-06-29T18:54:13,289 copying mhcflurry/pseudosequences.py -> build/lib/mhcflurry 2026-06-29T18:54:13,291 copying mhcflurry/random_negative_peptides.py -> build/lib/mhcflurry 2026-06-29T18:54:13,294 copying mhcflurry/testing_utils.py -> build/lib/mhcflurry 2026-06-29T18:54:13,296 copying mhcflurry/allele_encoding.py -> build/lib/mhcflurry 2026-06-29T18:54:13,299 creating build/lib/mhcflurry/cli 2026-06-29T18:54:13,300 copying mhcflurry/cli/main.py -> build/lib/mhcflurry/cli 2026-06-29T18:54:13,302 copying mhcflurry/cli/plot_model_comparison.py -> build/lib/mhcflurry/cli 2026-06-29T18:54:13,304 copying mhcflurry/cli/__init__.py -> build/lib/mhcflurry/cli 2026-06-29T18:54:13,306 copying mhcflurry/cli/compare_models.py -> build/lib/mhcflurry/cli 2026-06-29T18:54:13,312 copying mhcflurry/downloads.yml -> build/lib/mhcflurry 2026-06-29T18:54:13,347 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-06-29T18:54:13,347 !! 2026-06-29T18:54:13,348 ******************************************************************************** 2026-06-29T18:54:13,349 Please avoid running ``setup.py`` directly. 2026-06-29T18:54:13,350 Instead, use pypa/build, pypa/installer or other 2026-06-29T18:54:13,350 standards-based tools. 2026-06-29T18:54:13,351 This deprecation is overdue, please update your project and remove deprecated 2026-06-29T18:54:13,352 calls to avoid build errors in the future. 2026-06-29T18:54:13,353 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-06-29T18:54:13,354 ******************************************************************************** 2026-06-29T18:54:13,355 !! 2026-06-29T18:54:13,355 self.initialize_options() 2026-06-29T18:54:13,376 installing to build/bdist.linux-armv7l/wheel 2026-06-29T18:54:13,377 running install 2026-06-29T18:54:13,399 running install_lib 2026-06-29T18:54:13,427 creating build/bdist.linux-armv7l/wheel 2026-06-29T18:54:13,430 creating build/bdist.linux-armv7l/wheel/mhcflurry 2026-06-29T18:54:13,431 copying build/lib/mhcflurry/proteome_decoys.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,434 copying build/lib/mhcflurry/flanking_encoding.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,436 copying build/lib/mhcflurry/downloads_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,439 copying build/lib/mhcflurry/regression_target.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,440 copying build/lib/mhcflurry/peptide_reference.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,443 copying build/lib/mhcflurry/pytorch_losses.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,445 copying build/lib/mhcflurry/workload_planning.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,447 copying build/lib/mhcflurry/version.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,449 copying build/lib/mhcflurry/common.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,452 copying build/lib/mhcflurry/class1_affinity_training_data.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,454 copying build/lib/mhcflurry/hyperparameters.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,456 copying build/lib/mhcflurry/scoring.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,458 copying build/lib/mhcflurry/class1_processing_predictor.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,461 copying build/lib/mhcflurry/train_pan_allele_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,464 copying build/lib/mhcflurry/ensemble_centrality.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,466 copying build/lib/mhcflurry/cluster_parallelism.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,468 copying build/lib/mhcflurry/calibrate_percentile_ranks_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,471 copying build/lib/mhcflurry/train_allele_specific_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,474 copying build/lib/mhcflurry/fasta.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,477 copying build/lib/mhcflurry/select_processing_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,479 copying build/lib/mhcflurry/encodable_sequences.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,482 copying build/lib/mhcflurry/train_processing_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,485 copying build/lib/mhcflurry/downloads.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,487 copying build/lib/mhcflurry/amino_acid.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,491 creating build/bdist.linux-armv7l/wheel/mhcflurry/cli 2026-06-29T18:54:13,492 copying build/lib/mhcflurry/cli/main.py -> build/bdist.linux-armv7l/wheel/./mhcflurry/cli 2026-06-29T18:54:13,495 copying build/lib/mhcflurry/cli/plot_model_comparison.py -> build/bdist.linux-armv7l/wheel/./mhcflurry/cli 2026-06-29T18:54:13,497 copying build/lib/mhcflurry/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./mhcflurry/cli 2026-06-29T18:54:13,499 copying build/lib/mhcflurry/cli/compare_models.py -> build/bdist.linux-armv7l/wheel/./mhcflurry/cli 2026-06-29T18:54:13,502 copying build/lib/mhcflurry/motif_summary.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,505 copying build/lib/mhcflurry/percent_rank_transform.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,508 copying build/lib/mhcflurry/select_pan_allele_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,510 copying build/lib/mhcflurry/class1_presentation_predictor.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,514 copying build/lib/mhcflurry/custom_loss.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,516 copying build/lib/mhcflurry/training_benchmark.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,519 copying build/lib/mhcflurry/class1_processing_neural_network.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,522 copying build/lib/mhcflurry/class1_neural_network.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,528 copying build/lib/mhcflurry/predict_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,530 copying build/lib/mhcflurry/downloads.yml -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,533 copying build/lib/mhcflurry/cluster_worker_entry_point.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,535 copying build/lib/mhcflurry/local_parallelism.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,539 copying build/lib/mhcflurry/__init__.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,541 copying build/lib/mhcflurry/torch_training_loop.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,543 copying build/lib/mhcflurry/select_allele_specific_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,546 copying build/lib/mhcflurry/device_footprint.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,549 copying build/lib/mhcflurry/pytorch_layers.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,551 copying build/lib/mhcflurry/class1_affinity_predictor.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,556 copying build/lib/mhcflurry/predict_scan_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,558 copying build/lib/mhcflurry/data_dependent_weights_initialization.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,561 copying build/lib/mhcflurry/train_presentation_models_command.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,563 copying build/lib/mhcflurry/pseudosequences.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,565 copying build/lib/mhcflurry/random_negative_peptides.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,568 copying build/lib/mhcflurry/testing_utils.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,570 copying build/lib/mhcflurry/allele_encoding.py -> build/bdist.linux-armv7l/wheel/./mhcflurry 2026-06-29T18:54:13,572 running install_egg_info 2026-06-29T18:54:13,606 running egg_info 2026-06-29T18:54:13,634 writing mhcflurry.egg-info/PKG-INFO 2026-06-29T18:54:13,637 writing dependency_links to mhcflurry.egg-info/dependency_links.txt 2026-06-29T18:54:13,640 writing entry points to mhcflurry.egg-info/entry_points.txt 2026-06-29T18:54:13,641 writing requirements to mhcflurry.egg-info/requires.txt 2026-06-29T18:54:13,643 writing top-level names to mhcflurry.egg-info/top_level.txt 2026-06-29T18:54:13,678 reading manifest file 'mhcflurry.egg-info/SOURCES.txt' 2026-06-29T18:54:13,685 adding license file 'LICENSE' 2026-06-29T18:54:13,692 writing manifest file 'mhcflurry.egg-info/SOURCES.txt' 2026-06-29T18:54:13,694 Copying mhcflurry.egg-info to build/bdist.linux-armv7l/wheel/./mhcflurry-2.3.0rc6-py3.11.egg-info 2026-06-29T18:54:13,705 running install_scripts 2026-06-29T18:54:13,718 creating build/bdist.linux-armv7l/wheel/mhcflurry-2.3.0rc6.dist-info/WHEEL 2026-06-29T18:54:13,720 creating '/tmp/pip-wheel-rospg_up/mhcflurry-2.3.0rc6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-06-29T18:54:13,723 adding 'mhcflurry/__init__.py' 2026-06-29T18:54:13,725 adding 'mhcflurry/allele_encoding.py' 2026-06-29T18:54:13,729 adding 'mhcflurry/amino_acid.py' 2026-06-29T18:54:13,734 adding 'mhcflurry/calibrate_percentile_ranks_command.py' 2026-06-29T18:54:13,748 adding 'mhcflurry/class1_affinity_predictor.py' 2026-06-29T18:54:13,751 adding 'mhcflurry/class1_affinity_training_data.py' 2026-06-29T18:54:13,776 adding 'mhcflurry/class1_neural_network.py' 2026-06-29T18:54:13,783 adding 'mhcflurry/class1_presentation_predictor.py' 2026-06-29T18:54:13,789 adding 'mhcflurry/class1_processing_neural_network.py' 2026-06-29T18:54:13,791 adding 'mhcflurry/class1_processing_predictor.py' 2026-06-29T18:54:13,794 adding 'mhcflurry/cluster_parallelism.py' 2026-06-29T18:54:13,795 adding 'mhcflurry/cluster_worker_entry_point.py' 2026-06-29T18:54:13,798 adding 'mhcflurry/common.py' 2026-06-29T18:54:13,800 adding 'mhcflurry/custom_loss.py' 2026-06-29T18:54:13,802 adding 'mhcflurry/data_dependent_weights_initialization.py' 2026-06-29T18:54:13,804 adding 'mhcflurry/device_footprint.py' 2026-06-29T18:54:13,806 adding 'mhcflurry/downloads.py' 2026-06-29T18:54:13,808 adding 'mhcflurry/downloads.yml' 2026-06-29T18:54:13,810 adding 'mhcflurry/downloads_command.py' 2026-06-29T18:54:13,813 adding 'mhcflurry/encodable_sequences.py' 2026-06-29T18:54:13,814 adding 'mhcflurry/ensemble_centrality.py' 2026-06-29T18:54:13,815 adding 'mhcflurry/fasta.py' 2026-06-29T18:54:13,817 adding 'mhcflurry/flanking_encoding.py' 2026-06-29T18:54:13,819 adding 'mhcflurry/hyperparameters.py' 2026-06-29T18:54:13,829 adding 'mhcflurry/local_parallelism.py' 2026-06-29T18:54:13,832 adding 'mhcflurry/motif_summary.py' 2026-06-29T18:54:13,833 adding 'mhcflurry/peptide_reference.py' 2026-06-29T18:54:13,835 adding 'mhcflurry/percent_rank_transform.py' 2026-06-29T18:54:13,838 adding 'mhcflurry/predict_command.py' 2026-06-29T18:54:13,840 adding 'mhcflurry/predict_scan_command.py' 2026-06-29T18:54:13,842 adding 'mhcflurry/proteome_decoys.py' 2026-06-29T18:54:13,844 adding 'mhcflurry/pseudosequences.py' 2026-06-29T18:54:13,845 adding 'mhcflurry/pytorch_layers.py' 2026-06-29T18:54:13,847 adding 'mhcflurry/pytorch_losses.py' 2026-06-29T18:54:13,851 adding 'mhcflurry/random_negative_peptides.py' 2026-06-29T18:54:13,853 adding 'mhcflurry/regression_target.py' 2026-06-29T18:54:13,854 adding 'mhcflurry/scoring.py' 2026-06-29T18:54:13,858 adding 'mhcflurry/select_allele_specific_models_command.py' 2026-06-29T18:54:13,860 adding 'mhcflurry/select_pan_allele_models_command.py' 2026-06-29T18:54:13,862 adding 'mhcflurry/select_processing_models_command.py' 2026-06-29T18:54:13,864 adding 'mhcflurry/testing_utils.py' 2026-06-29T18:54:13,866 adding 'mhcflurry/torch_training_loop.py' 2026-06-29T18:54:13,869 adding 'mhcflurry/train_allele_specific_models_command.py' 2026-06-29T18:54:13,875 adding 'mhcflurry/train_pan_allele_models_command.py' 2026-06-29T18:54:13,877 adding 'mhcflurry/train_presentation_models_command.py' 2026-06-29T18:54:13,881 adding 'mhcflurry/train_processing_models_command.py' 2026-06-29T18:54:13,884 adding 'mhcflurry/training_benchmark.py' 2026-06-29T18:54:13,885 adding 'mhcflurry/version.py' 2026-06-29T18:54:13,888 adding 'mhcflurry/workload_planning.py' 2026-06-29T18:54:13,890 adding 'mhcflurry/cli/__init__.py' 2026-06-29T18:54:13,895 adding 'mhcflurry/cli/compare_models.py' 2026-06-29T18:54:13,897 adding 'mhcflurry/cli/main.py' 2026-06-29T18:54:13,899 adding 'mhcflurry/cli/plot_model_comparison.py' 2026-06-29T18:54:13,903 adding 'mhcflurry-2.3.0rc6.dist-info/licenses/LICENSE' 2026-06-29T18:54:13,905 adding 'mhcflurry-2.3.0rc6.dist-info/METADATA' 2026-06-29T18:54:13,906 adding 'mhcflurry-2.3.0rc6.dist-info/WHEEL' 2026-06-29T18:54:13,907 adding 'mhcflurry-2.3.0rc6.dist-info/entry_points.txt' 2026-06-29T18:54:13,908 adding 'mhcflurry-2.3.0rc6.dist-info/top_level.txt' 2026-06-29T18:54:13,909 adding 'mhcflurry-2.3.0rc6.dist-info/RECORD' 2026-06-29T18:54:13,915 removing build/bdist.linux-armv7l/wheel 2026-06-29T18:54:14,038 Building wheel for mhcflurry (setup.py): finished with status 'done' 2026-06-29T18:54:14,044 Created wheel for mhcflurry: filename=mhcflurry-2.3.0rc6-py3-none-any.whl size=346863 sha256=c8a3b2003c91ac52a6b0c585a4a88faefb2e5d97de9a35b2ad6852eb20cf443d 2026-06-29T18:54:14,046 Stored in directory: /tmp/pip-ephem-wheel-cache-qjzgycuo/wheels/63/19/db/ddfe005090a62d3f2423a25e51c541fbb693d3a16a88819834 2026-06-29T18:54:14,060 Successfully built mhcflurry 2026-06-29T18:54:14,077 Removed build tracker: '/tmp/pip-build-tracker-ez8iu4ga'