2026-06-29T21:10:02,879 Created temporary directory: /tmp/pip-ephem-wheel-cache-t0lyf6vx
2026-06-29T21:10:02,881 Created temporary directory: /tmp/pip-build-tracker-2tlzaiju
2026-06-29T21:10:02,882 Initialized build tracking at /tmp/pip-build-tracker-2tlzaiju
2026-06-29T21:10:02,882 Created build tracker: /tmp/pip-build-tracker-2tlzaiju
2026-06-29T21:10:02,882 Entered build tracker: /tmp/pip-build-tracker-2tlzaiju
2026-06-29T21:10:02,883 Created temporary directory: /tmp/pip-wheel-hvfi3xbp
2026-06-29T21:10:02,886 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-29T21:10:02,888 Created temporary directory: /tmp/pip-ephem-wheel-cache-2mpwn2kl
2026-06-29T21:10:02,912 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-29T21:10:02,916 2 location(s) to search for versions of oncoref:
2026-06-29T21:10:02,916 * https://pypi.org/simple/oncoref/
2026-06-29T21:10:02,916 * https://www.piwheels.org/simple/oncoref/
2026-06-29T21:10:02,916 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/
2026-06-29T21:10:02,917 Getting page https://pypi.org/simple/oncoref/
2026-06-29T21:10:02,918 Found index url https://pypi.org/simple
2026-06-29T21:10:03,074 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json
2026-06-29T21:10:03,086   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,087   Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0
2026-06-29T21:10:03,088   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,089   Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0
2026-06-29T21:10:03,089   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,090   Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0
2026-06-29T21:10:03,091   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,092   Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1
2026-06-29T21:10:03,093   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,093   Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2
2026-06-29T21:10:03,094   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,095   Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3
2026-06-29T21:10:03,096   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,097   Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4
2026-06-29T21:10:03,097   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,098   Found link https://files.pythonhosted.org/packages/0a/e2/de65c5e1582fe009b3f640e94e6ecd5cf2f139d490750374cdad3af0e14c/oncoref-1.8.5.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.5
2026-06-29T21:10:03,099   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/71/92/3cd4d589831ccb90b12732347718e54d84097a6c780ced1810f52e3b302a/oncoref-1.8.6-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,100   Found link https://files.pythonhosted.org/packages/fe/29/0640ff92bcb51841b69a4d04ccf94a5173a18ee10c54786b959026ca4362/oncoref-1.8.6.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.6
2026-06-29T21:10:03,100   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f2/29/f869b37c956b8836b9c9b45e89ab7dad98a93270e6bd395b45a7ca5657ad/oncoref-1.8.7-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,101   Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7
2026-06-29T21:10:03,102   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,103   Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8
2026-06-29T21:10:03,103   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,104   Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9
2026-06-29T21:10:03,105   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,106   Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10
2026-06-29T21:10:03,107   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,107   Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11
2026-06-29T21:10:03,108   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,109   Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12
2026-06-29T21:10:03,109   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,110   Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13
2026-06-29T21:10:03,111   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2f/c1/703bd890ae830651eae083a090278ba8254ac89bae1c0bfefed061c3e2eb/oncoref-1.8.14-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,112   Found link https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.14
2026-06-29T21:10:03,112   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ac/42/91b2b04455fb29d40afb47dc7ee2eae30218a24c4d540d95191d31f6f98e/oncoref-1.8.15-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,113   Found link https://files.pythonhosted.org/packages/26/8a/9cb4754077d37b89ed3ee3781cffdb03040d90286aaaedacba8cb238d7c3/oncoref-1.8.15.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.15
2026-06-29T21:10:03,114   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/3f/1af50bb6d208ada32a29b7e3ed29169932b97542b48e765c1d96130b7f3d/oncoref-1.8.16-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,114   Found link https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.16
2026-06-29T21:10:03,115   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/77/d24a0f29e452b83e5d6a1bfb366c72b8407bc7505d94280ca3ba609de07e/oncoref-1.8.17-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,116   Found link https://files.pythonhosted.org/packages/c1/e7/7f753f3a4b044b3f3bc8f75b75ef24df1c9b77d3f0742ee37fc243441830/oncoref-1.8.17.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.17
2026-06-29T21:10:03,116   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/04/55/5f2c1936263bdbe9a95a7c82d673eae8724b3eb1b99d4c1c33eadfc6edf5/oncoref-1.8.18-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,117   Found link https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.18
2026-06-29T21:10:03,118   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/07/35/638b350ebd4fd975c88adb9168c250b482cf549a77381cced479cdf3923f/oncoref-1.8.19-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,119   Found link https://files.pythonhosted.org/packages/39/5a/c1460247c124e495fc20ae3e76a760ee67da5f7263531a1093ae4cdc1983/oncoref-1.8.19.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.19
2026-06-29T21:10:03,119   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/eb/2d/584fe29a9ae1a336ec8dc1dadc08e60e036de296b703c428b69aafb97ee7/oncoref-1.8.20-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,120   Found link https://files.pythonhosted.org/packages/aa/5b/9be05673420aae6512388fb70ff3b3802ca0bca46179299c93e9bdea7cb1/oncoref-1.8.20.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.20
2026-06-29T21:10:03,121   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/c2/b8/d13577ba1cd9a054203201a66d94d70c8c71156e5afaf85c557c52a8a4c8/oncoref-1.8.21-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,122   Found link https://files.pythonhosted.org/packages/f6/9d/ca143333eade742f336f48670b06ee9849c2c31d9322c5c7bb6979a191a3/oncoref-1.8.21.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.21
2026-06-29T21:10:03,122   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/59/bd/c385a7916a14b417f607eecb73034e821165e8f650435947ecf8845c5161/oncoref-1.8.22-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,123   Found link https://files.pythonhosted.org/packages/a7/cc/f9b0c987a30c7928b99e165f2bd778a677eb1433eb0802911d6678139aeb/oncoref-1.8.22.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.22
2026-06-29T21:10:03,124   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/e7/f2/ae5d03f1bf678a753916310b281effcbc4cf19a4e0e6995437966ad6ac91/oncoref-1.8.23-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,124   Found link https://files.pythonhosted.org/packages/be/8c/f6a66a8ae2ba39778734de5548a77246995f30c636670ff2ca38094ff59e/oncoref-1.8.23.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.23
2026-06-29T21:10:03,125   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/8d/ca3b2c8c719845b8c38ff91118723bb2c965155ac0a49af2ff8ceff50a56/oncoref-1.8.24-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,126   Found link https://files.pythonhosted.org/packages/62/f6/e9a386e5a93bd80d065addcc4050fefd3bb6e8b55b75ea3ba88025f95255/oncoref-1.8.24.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.24
2026-06-29T21:10:03,126   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/8d/48/dd730548afc982ad049e59c8084f8847a0c49e3d0e288d7b0c299abdad9b/oncoref-1.8.25-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,127   Found link https://files.pythonhosted.org/packages/fe/48/42ff82844f2c14e04799c0441651a2c9b147da3707e4924129d0352b5525/oncoref-1.8.25.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.25
2026-06-29T21:10:03,128   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/15/fc/76fa123a1303b6db49cade8bf9985e206e992b14ad3d49b446acf8ee9516/oncoref-1.8.26-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,129   Found link https://files.pythonhosted.org/packages/e7/5c/785ef9ba1884cb96cc5c5bb24da2b2b7d5836404cefa2cc6b9589707d264/oncoref-1.8.26.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.26
2026-06-29T21:10:03,130   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/1f/6e/9d45c29e74006d28dd4da8b329a4b939dd7bfa89496792f969392734b44a/oncoref-1.8.27-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,130   Found link https://files.pythonhosted.org/packages/b1/35/566b316d8325fc6cf07c3cb72c7432a37302396da59a1b78dbd75c3c8e2b/oncoref-1.8.27.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.27
2026-06-29T21:10:03,131   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/97/00/35532e9bdea879c0aa0ccabcdb2cd219ebb85a68b2217df7ba7b4e690ae7/oncoref-1.8.28-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,132   Found link https://files.pythonhosted.org/packages/13/9d/8de61415a5fc5f654ab220434460585d470cbad471be6847a7ab9df31f8e/oncoref-1.8.28.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.28
2026-06-29T21:10:03,132   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/a0/67/d6b656f6dac57592c3159a801f6d02a92a2ce18ba32ccd5706b5207e164a/oncoref-1.8.29-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,133   Found link https://files.pythonhosted.org/packages/9c/6c/71ee87713c388d513cd17e32e306ca91bc88c047b888a2149d6eecc47e4a/oncoref-1.8.29.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.29
2026-06-29T21:10:03,134 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/
2026-06-29T21:10:03,134 Getting page https://www.piwheels.org/simple/oncoref/
2026-06-29T21:10:03,136 Found index url https://www.piwheels.org/simple
2026-06-29T21:10:03,322 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html
2026-06-29T21:10:03,332   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.28-py3-none-any.whl#sha256=cc2983644df05ded88c207ab066302a8a8669e4810fb2f6fa841b9816d0d45d0 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,333   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.27-py3-none-any.whl#sha256=8a003ee62f52d11477b06f1b57b7380ac5407521c557a7c6e3d454d64654d473 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,333   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.26-py3-none-any.whl#sha256=577cc03d90c5cc790909fba9f7a20fcbb5a1825a744ad3917b8314b33d0dc71d (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,334   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.25-py3-none-any.whl#sha256=af07dfe64ba72883f3223dd56f5b55a3370d8deb1d781fcff373e4aa696cadd2 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,334   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.24-py3-none-any.whl#sha256=37eddc72a25836c04689e807b2e937964e7758be69a3c63ef6f43b079edd274b (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,335   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.23-py3-none-any.whl#sha256=93e12c751d36e6067e12446d95075d3f1529e62cabab5ddafc06717951f4b978 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,335   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.22-py3-none-any.whl#sha256=f9f6af90f23f91ed83e606231a0b8288143792f632998acf8e42adb9b41fa572 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,336   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.21-py3-none-any.whl#sha256=ac7131b0f8f46c73d142fc08042a64e251ad3df564bfc62308d462affc18f008 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,337   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.20-py3-none-any.whl#sha256=02858d3770dc0077ec2663efc1ab8ae19e982b234caa93e7035f95670b0d174e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,337   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.19-py3-none-any.whl#sha256=bbbd40de31c902830f47fa96432cc1984e1164d334e95a40633e18ec8caaa41e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,338   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.18-py3-none-any.whl#sha256=91f223a369ce125813e0c188cafd3277343fd2ca1caa4d34a5394ba1cb195781 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,338   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.17-py3-none-any.whl#sha256=5fa3e3356c1574425d42aebe7d135c933ff623b539736554634a762eeaab4a29 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,338   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.16-py3-none-any.whl#sha256=9defcd77c3360e0675a10c0b8de4a1784c19f227a985079b95e21e462de63e97 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,339   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.15-py3-none-any.whl#sha256=4dcd40c2e5c10b8f8be0d8df8489b5f05153d465eb43ddf7f9dc158bbe6b1de3 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,339   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.14-py3-none-any.whl#sha256=ac41cf84ca97c695a15f40326738750e2762e39f366bf99300777803874b26da (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,340   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.13-py3-none-any.whl#sha256=91c3e1fa8448033a913075559a2ee2b76fcbad64e20aeb7696484a9a5619dbef (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,340   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.12-py3-none-any.whl#sha256=2a0e59477b8939fc63d4a78f31b0b793fb2f49ea2aab861d853fa8479ccf9608 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,341   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.11-py3-none-any.whl#sha256=602ac0deb73739e65dfb65105b23357a94a67eb9e1faac0880bff5203ed4a818 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,341   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.10-py3-none-any.whl#sha256=3e789fd35641073e8afc8885dcef12d74a2323c2e0c8dad7b5e369392675e83a (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,342   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.9-py3-none-any.whl#sha256=2415de57054126a885d64b626bbb12657ce55d0791a686b7aba85fd8b784d399 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,343   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.8-py3-none-any.whl#sha256=f1b7351039ce534abc9d36a03b53fd9479b1629b4a6fd8698bc500162f1cd362 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,343   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.7-py3-none-any.whl#sha256=84f80af8afa25d02579e67983b74fd2e515df1ce6d0cb602ecb6808e994f8f63 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,344   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.6-py3-none-any.whl#sha256=460f281fc846e410a5992e3a87193febdfac8bf81f3e5497a5e5d72ae58176bf (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,344   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.5-py3-none-any.whl#sha256=cfedb20aa2c2593dfb010bc01a13d5b6c732ec5cf013fd70b65c71d1adb71f7e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,345   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,345   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,346   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,346   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,347   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,347   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,348   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-29T21:10:03,348 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/
2026-06-29T21:10:03,349 Skipping link: not a file: https://pypi.org/simple/oncoref/
2026-06-29T21:10:03,370 Given no hashes to check 1 links for project 'oncoref': discarding no candidates
2026-06-29T21:10:03,388 Collecting oncoref==1.8.29
2026-06-29T21:10:03,390   Created temporary directory: /tmp/pip-unpack-lt1qi2jo
2026-06-29T21:10:03,621   Downloading oncoref-1.8.29.tar.gz (1.7 MB)
2026-06-29T21:10:04,388   Added oncoref==1.8.29 from https://files.pythonhosted.org/packages/9c/6c/71ee87713c388d513cd17e32e306ca91bc88c047b888a2149d6eecc47e4a/oncoref-1.8.29.tar.gz to build tracker '/tmp/pip-build-tracker-2tlzaiju'
2026-06-29T21:10:04,395   Created temporary directory: /tmp/pip-build-env-c49szlbg
2026-06-29T21:10:04,400   Installing build dependencies: started
2026-06-29T21:10:04,401   Running command pip subprocess to install build dependencies
2026-06-29T21:10:05,594   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-06-29T21:10:06,072   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-29T21:10:06,097   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-29T21:10:07,935   Collecting setuptools>=61.0
2026-06-29T21:10:07,936     Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-06-29T21:10:07,951     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-06-29T21:10:08,183   Collecting wheel
2026-06-29T21:10:08,184     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-06-29T21:10:08,199     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-06-29T21:10:08,384   Collecting packaging>=24.0
2026-06-29T21:10:08,385     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-06-29T21:10:08,400     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-06-29T21:10:08,591   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-29T21:10:08,612   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-29T21:10:08,697   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-29T21:10:08,733   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-29T21:10:08,759   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-29T21:10:08,845   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-29T21:10:11,613   Installing collected packages: setuptools, packaging, wheel
2026-06-29T21:10:15,087     Creating /tmp/pip-build-env-c49szlbg/overlay/local/bin
2026-06-29T21:10:15,089     changing mode of /tmp/pip-build-env-c49szlbg/overlay/local/bin/wheel to 755
2026-06-29T21:10:15,109   Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0
2026-06-29T21:10:15,394   Installing build dependencies: finished with status 'done'
2026-06-29T21:10:15,401   Getting requirements to build wheel: started
2026-06-29T21:10:15,402   Running command Getting requirements to build wheel
2026-06-29T21:10:16,111   running egg_info
2026-06-29T21:10:16,117   writing oncoref.egg-info/PKG-INFO
2026-06-29T21:10:16,122   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-29T21:10:16,124   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-29T21:10:16,127   writing requirements to oncoref.egg-info/requires.txt
2026-06-29T21:10:16,128   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-29T21:10:16,163   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T21:10:16,172   reading manifest template 'MANIFEST.in'
2026-06-29T21:10:16,173   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T21:10:16,175   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T21:10:16,176   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T21:10:16,177   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T21:10:16,179   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T21:10:16,180   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T21:10:16,180   adding license file 'LICENSE'
2026-06-29T21:10:16,189   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T21:10:16,287   Getting requirements to build wheel: finished with status 'done'
2026-06-29T21:10:16,290   Created temporary directory: /tmp/pip-modern-metadata-3glmlb36
2026-06-29T21:10:16,292   Preparing metadata (pyproject.toml): started
2026-06-29T21:10:16,294   Running command Preparing metadata (pyproject.toml)
2026-06-29T21:10:17,371   running dist_info
2026-06-29T21:10:17,381   creating /tmp/pip-modern-metadata-3glmlb36/oncoref.egg-info
2026-06-29T21:10:17,382   writing /tmp/pip-modern-metadata-3glmlb36/oncoref.egg-info/PKG-INFO
2026-06-29T21:10:17,387   writing dependency_links to /tmp/pip-modern-metadata-3glmlb36/oncoref.egg-info/dependency_links.txt
2026-06-29T21:10:17,389   writing entry points to /tmp/pip-modern-metadata-3glmlb36/oncoref.egg-info/entry_points.txt
2026-06-29T21:10:17,392   writing requirements to /tmp/pip-modern-metadata-3glmlb36/oncoref.egg-info/requires.txt
2026-06-29T21:10:17,393   writing top-level names to /tmp/pip-modern-metadata-3glmlb36/oncoref.egg-info/top_level.txt
2026-06-29T21:10:17,394   writing manifest file '/tmp/pip-modern-metadata-3glmlb36/oncoref.egg-info/SOURCES.txt'
2026-06-29T21:10:17,427   reading manifest file '/tmp/pip-modern-metadata-3glmlb36/oncoref.egg-info/SOURCES.txt'
2026-06-29T21:10:17,429   reading manifest template 'MANIFEST.in'
2026-06-29T21:10:17,430   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T21:10:17,431   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T21:10:17,432   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T21:10:17,434   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T21:10:17,434   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T21:10:17,435   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T21:10:17,436   adding license file 'LICENSE'
2026-06-29T21:10:17,442   writing manifest file '/tmp/pip-modern-metadata-3glmlb36/oncoref.egg-info/SOURCES.txt'
2026-06-29T21:10:17,443   creating '/tmp/pip-modern-metadata-3glmlb36/oncoref-1.8.29.dist-info'
2026-06-29T21:10:17,593   Preparing metadata (pyproject.toml): finished with status 'done'
2026-06-29T21:10:17,598   Source in /tmp/pip-wheel-hvfi3xbp/oncoref_c278cc19f7be475885aac136adfe1ca4 has version 1.8.29, which satisfies requirement oncoref==1.8.29 from https://files.pythonhosted.org/packages/9c/6c/71ee87713c388d513cd17e32e306ca91bc88c047b888a2149d6eecc47e4a/oncoref-1.8.29.tar.gz
2026-06-29T21:10:17,599   Removed oncoref==1.8.29 from https://files.pythonhosted.org/packages/9c/6c/71ee87713c388d513cd17e32e306ca91bc88c047b888a2149d6eecc47e4a/oncoref-1.8.29.tar.gz from build tracker '/tmp/pip-build-tracker-2tlzaiju'
2026-06-29T21:10:17,605 Created temporary directory: /tmp/pip-unpack-hfg0ogav
2026-06-29T21:10:17,606 Building wheels for collected packages: oncoref
2026-06-29T21:10:17,610   Created temporary directory: /tmp/pip-wheel-3oo518gp
2026-06-29T21:10:17,610   Destination directory: /tmp/pip-wheel-3oo518gp
2026-06-29T21:10:17,613   Building wheel for oncoref (pyproject.toml): started
2026-06-29T21:10:17,614   Running command Building wheel for oncoref (pyproject.toml)
2026-06-29T21:10:18,233   running bdist_wheel
2026-06-29T21:10:18,250   running build
2026-06-29T21:10:18,250   running build_py
2026-06-29T21:10:18,257   creating build/lib/oncoref
2026-06-29T21:10:18,260   copying oncoref/cta.py -> build/lib/oncoref
2026-06-29T21:10:18,262   copying oncoref/cohorts.py -> build/lib/oncoref
2026-06-29T21:10:18,264   copying oncoref/expression.py -> build/lib/oncoref
2026-06-29T21:10:18,269   copying oncoref/response_signatures.py -> build/lib/oncoref
2026-06-29T21:10:18,271   copying oncoref/data_bundle.py -> build/lib/oncoref
2026-06-29T21:10:18,273   copying oncoref/tmb.py -> build/lib/oncoref
2026-06-29T21:10:18,276   copying oncoref/cta_tissues.py -> build/lib/oncoref
2026-06-29T21:10:18,278   copying oncoref/gene_ids.py -> build/lib/oncoref
2026-06-29T21:10:18,280   copying oncoref/source_matrices.py -> build/lib/oncoref
2026-06-29T21:10:18,282   copying oncoref/gene_qc.py -> build/lib/oncoref
2026-06-29T21:10:18,285   copying oncoref/cli.py -> build/lib/oncoref
2026-06-29T21:10:18,287   copying oncoref/peptides.py -> build/lib/oncoref
2026-06-29T21:10:18,290   copying oncoref/expression_builders.py -> build/lib/oncoref
2026-06-29T21:10:18,292   copying oncoref/proteoforms.py -> build/lib/oncoref
2026-06-29T21:10:18,295   copying oncoref/samples.py -> build/lib/oncoref
2026-06-29T21:10:18,297   copying oncoref/cancer_genes.py -> build/lib/oncoref
2026-06-29T21:10:18,299   copying oncoref/expression_engine.py -> build/lib/oncoref
2026-06-29T21:10:18,302   copying oncoref/ici_response.py -> build/lib/oncoref
2026-06-29T21:10:18,304   copying oncoref/reference_data.py -> build/lib/oncoref
2026-06-29T21:10:18,306   copying oncoref/normalization.py -> build/lib/oncoref
2026-06-29T21:10:18,309   copying oncoref/apd1.py -> build/lib/oncoref
2026-06-29T21:10:18,311   copying oncoref/catalog.py -> build/lib/oncoref
2026-06-29T21:10:18,314   copying oncoref/antigen_coverage.py -> build/lib/oncoref
2026-06-29T21:10:18,316   copying oncoref/plots.py -> build/lib/oncoref
2026-06-29T21:10:18,319   copying oncoref/data_manifest.py -> build/lib/oncoref
2026-06-29T21:10:18,322   copying oncoref/hpa.py -> build/lib/oncoref
2026-06-29T21:10:18,324   copying oncoref/genome.py -> build/lib/oncoref
2026-06-29T21:10:18,326   copying oncoref/incidence.py -> build/lib/oncoref
2026-06-29T21:10:18,328   copying oncoref/cancer_types.py -> build/lib/oncoref
2026-06-29T21:10:18,332   copying oncoref/cta_curation_plots.py -> build/lib/oncoref
2026-06-29T21:10:18,334   copying oncoref/load_dataset.py -> build/lib/oncoref
2026-06-29T21:10:18,336   copying oncoref/cta_regen.py -> build/lib/oncoref
2026-06-29T21:10:18,339   copying oncoref/__init__.py -> build/lib/oncoref
2026-06-29T21:10:18,342   copying oncoref/cta_coverage.py -> build/lib/oncoref
2026-06-29T21:10:18,344   copying oncoref/fusions.py -> build/lib/oncoref
2026-06-29T21:10:18,346   copying oncoref/coverage.py -> build/lib/oncoref
2026-06-29T21:10:18,349   copying oncoref/version.py -> build/lib/oncoref
2026-06-29T21:10:18,350   copying oncoref/cancer_ontology.py -> build/lib/oncoref
2026-06-29T21:10:18,352   copying oncoref/ici.py -> build/lib/oncoref
2026-06-29T21:10:18,355   copying oncoref/cta_peptides.py -> build/lib/oncoref
2026-06-29T21:10:18,357   copying oncoref/expression_registry.py -> build/lib/oncoref
2026-06-29T21:10:18,360   copying oncoref/gene_families.py -> build/lib/oncoref
2026-06-29T21:10:18,374   creating build/lib/oncoref/data
2026-06-29T21:10:18,375   copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,378   copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,380   copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,383   copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,386   copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,389   copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,392   copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,395   copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,401   copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,405   copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,408   copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,410   copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,413   copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,416   copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,418   copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,421   copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,423   copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,426   copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,428   copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,430   copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,433   copying oncoref/data/expression-artifact-gene-universe-deltas.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,436   copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,439   copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,442   copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,445   copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,448   copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,455   copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,458   copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,461   copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,463   copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,465   copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,470   copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,474   copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,477   copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,479   copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,482   copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,484   copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,489   copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,491   copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,494   copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,497   copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,499   copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,502   copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,505   copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,507   copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,522   copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,524   copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,526   copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,529   copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,531   copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,533   copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,543   copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,546   copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,549   copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data
2026-06-29T21:10:18,551   copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data
2026-06-29T21:10:18,568   copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data
2026-06-29T21:10:18,577   copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data
2026-06-29T21:10:18,584   copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data
2026-06-29T21:10:18,598   installing to build/bdist.linux-armv7l/wheel
2026-06-29T21:10:18,598   running install
2026-06-29T21:10:18,621   running install_lib
2026-06-29T21:10:18,627   creating build/bdist.linux-armv7l/wheel
2026-06-29T21:10:18,629   creating build/bdist.linux-armv7l/wheel/oncoref
2026-06-29T21:10:18,630   copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,633   copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,635   copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,638   copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,640   copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,643   copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,645   copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,647   copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,649   copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,652   copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,654   copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,657   copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,659   copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,661   copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,664   copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,666   copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,668   copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,671   copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,673   copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,675   copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,678   copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,680   copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,682   copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,684   copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,687   copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,690   copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,692   copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,694   copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,696   copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,700   copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,703   creating build/bdist.linux-armv7l/wheel/oncoref/data
2026-06-29T21:10:18,705   copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,707   copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,709   copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,711   copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,713   copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,715   copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,718   copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,721   copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,724   copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,731   copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,736   copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,739   copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,740   copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,743   copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,746   copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,757   copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,760   copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,762   copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,764   copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,766   copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,774   copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,776   copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,778   copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,779   copying build/lib/oncoref/data/expression-artifact-gene-universe-deltas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,782   copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,784   copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,787   copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,789   copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,791   copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,796   copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,798   copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,800   copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,802   copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,804   copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,809   copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,811   copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,819   copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,822   copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,825   copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,827   copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,829   copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,833   copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,835   copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,838   copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,840   copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,842   copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,844   copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,846   copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,849   copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,859   copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,862   copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,864   copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,866   copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,868   copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,870   copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,877   copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,881   copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,883   copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-29T21:10:18,885   copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,888   copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,891   copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,894   copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,897   copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,900   copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,903   copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,906   copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,908   copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,912   copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,915   copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,917   copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-29T21:10:18,920   running install_egg_info
2026-06-29T21:10:18,930   running egg_info
2026-06-29T21:10:18,935   writing oncoref.egg-info/PKG-INFO
2026-06-29T21:10:18,940   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-29T21:10:18,942   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-29T21:10:18,945   writing requirements to oncoref.egg-info/requires.txt
2026-06-29T21:10:18,946   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-29T21:10:18,965   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T21:10:18,975   reading manifest template 'MANIFEST.in'
2026-06-29T21:10:18,977   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-29T21:10:18,978   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-29T21:10:18,980   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-29T21:10:18,982   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-29T21:10:18,983   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-29T21:10:18,984   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-29T21:10:18,985   adding license file 'LICENSE'
2026-06-29T21:10:18,994   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-29T21:10:18,996   Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.29-py3.11.egg-info
2026-06-29T21:10:19,008   running install_scripts
2026-06-29T21:10:19,029   creating build/bdist.linux-armv7l/wheel/oncoref-1.8.29.dist-info/WHEEL
2026-06-29T21:10:19,035   creating '/tmp/pip-wheel-3oo518gp/.tmp-c5mgy_ib/oncoref-1.8.29-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-29T21:10:19,254   adding 'oncoref/__init__.py'
2026-06-29T21:10:19,256   adding 'oncoref/antigen_coverage.py'
2026-06-29T21:10:19,258   adding 'oncoref/apd1.py'
2026-06-29T21:10:19,260   adding 'oncoref/cancer_genes.py'
2026-06-29T21:10:19,262   adding 'oncoref/cancer_ontology.py'
2026-06-29T21:10:19,269   adding 'oncoref/cancer_types.py'
2026-06-29T21:10:19,272   adding 'oncoref/catalog.py'
2026-06-29T21:10:19,276   adding 'oncoref/cli.py'
2026-06-29T21:10:19,277   adding 'oncoref/cohorts.py'
2026-06-29T21:10:19,281   adding 'oncoref/coverage.py'
2026-06-29T21:10:19,284   adding 'oncoref/cta.py'
2026-06-29T21:10:19,286   adding 'oncoref/cta_coverage.py'
2026-06-29T21:10:19,288   adding 'oncoref/cta_curation_plots.py'
2026-06-29T21:10:19,290   adding 'oncoref/cta_peptides.py'
2026-06-29T21:10:19,293   adding 'oncoref/cta_regen.py'
2026-06-29T21:10:19,295   adding 'oncoref/cta_tissues.py'
2026-06-29T21:10:19,299   adding 'oncoref/data_bundle.py'
2026-06-29T21:10:19,302   adding 'oncoref/data_manifest.py'
2026-06-29T21:10:19,315   adding 'oncoref/expression.py'
2026-06-29T21:10:19,319   adding 'oncoref/expression_builders.py'
2026-06-29T21:10:19,322   adding 'oncoref/expression_engine.py'
2026-06-29T21:10:19,324   adding 'oncoref/expression_registry.py'
2026-06-29T21:10:19,326   adding 'oncoref/fusions.py'
2026-06-29T21:10:19,329   adding 'oncoref/gene_families.py'
2026-06-29T21:10:19,331   adding 'oncoref/gene_ids.py'
2026-06-29T21:10:19,333   adding 'oncoref/gene_qc.py'
2026-06-29T21:10:19,336   adding 'oncoref/genome.py'
2026-06-29T21:10:19,338   adding 'oncoref/hpa.py'
2026-06-29T21:10:19,342   adding 'oncoref/ici.py'
2026-06-29T21:10:19,345   adding 'oncoref/ici_response.py'
2026-06-29T21:10:19,347   adding 'oncoref/incidence.py'
2026-06-29T21:10:19,349   adding 'oncoref/load_dataset.py'
2026-06-29T21:10:19,354   adding 'oncoref/normalization.py'
2026-06-29T21:10:19,356   adding 'oncoref/peptides.py'
2026-06-29T21:10:19,364   adding 'oncoref/plots.py'
2026-06-29T21:10:19,367   adding 'oncoref/proteoforms.py'
2026-06-29T21:10:19,369   adding 'oncoref/reference_data.py'
2026-06-29T21:10:19,371   adding 'oncoref/response_signatures.py'
2026-06-29T21:10:19,373   adding 'oncoref/samples.py'
2026-06-29T21:10:19,375   adding 'oncoref/source_matrices.py'
2026-06-29T21:10:19,377   adding 'oncoref/tmb.py'
2026-06-29T21:10:19,379   adding 'oncoref/version.py'
2026-06-29T21:10:19,383   adding 'oncoref/data/cancer-apd1-response.csv'
2026-06-29T21:10:19,384   adding 'oncoref/data/cancer-code-burden-map.csv'
2026-06-29T21:10:19,386   adding 'oncoref/data/cancer-cohort-aggregates.csv'
2026-06-29T21:10:19,391   adding 'oncoref/data/cancer-driver-genes.csv'
2026-06-29T21:10:19,394   adding 'oncoref/data/cancer-driver-variants.csv'
2026-06-29T21:10:19,397   adding 'oncoref/data/cancer-expression-source-candidates.csv'
2026-06-29T21:10:19,399   adding 'oncoref/data/cancer-frameshift-burden.csv'
2026-06-29T21:10:19,403   adding 'oncoref/data/cancer-fusions.csv'
2026-06-29T21:10:19,420   adding 'oncoref/data/cancer-ici-response-estimates.csv'
2026-06-29T21:10:19,425   adding 'oncoref/data/cancer-ici-response.csv'
2026-06-29T21:10:19,427   adding 'oncoref/data/cancer-incidence-mortality.csv'
2026-06-29T21:10:19,442   adding 'oncoref/data/cancer-key-genes.csv'
2026-06-29T21:10:19,444   adding 'oncoref/data/cancer-lineage-group-overrides.csv'
2026-06-29T21:10:19,446   adding 'oncoref/data/cancer-lineage-groups.csv'
2026-06-29T21:10:19,448   adding 'oncoref/data/cancer-normal-tissue-map.csv'
2026-06-29T21:10:19,477   adding 'oncoref/data/cancer-reference-expression-samples.csv.gz'
2026-06-29T21:10:19,480   adding 'oncoref/data/cancer-response-signatures.csv'
2026-06-29T21:10:19,482   adding 'oncoref/data/cancer-subtype-groupings.csv'
2026-06-29T21:10:19,494   adding 'oncoref/data/cancer-testis-antigens.csv'
2026-06-29T21:10:19,498   adding 'oncoref/data/cancer-tmb.csv'
2026-06-29T21:10:19,501   adding 'oncoref/data/cancer-type-genes.csv'
2026-06-29T21:10:19,505   adding 'oncoref/data/cancer-type-registry.csv'
2026-06-29T21:10:19,507   adding 'oncoref/data/cancer-viral-antigens.csv'
2026-06-29T21:10:19,560   adding 'oncoref/data/canonical-gene-space.csv.gz'
2026-06-29T21:10:19,566   adding 'oncoref/data/cdna-identical-gene-groups.csv'
2026-06-29T21:10:19,570   adding 'oncoref/data/censored-gene-reference-tpm.csv'
2026-06-29T21:10:19,572   adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv'
2026-06-29T21:10:19,583   adding 'oncoref/data/clean-tpm-censored-genes.csv'
2026-06-29T21:10:19,586   adding 'oncoref/data/cohort-registry.csv'
2026-06-29T21:10:19,588   adding 'oncoref/data/cta-candidate-references.csv'
2026-06-29T21:10:19,590   adding 'oncoref/data/cta-ihc-unreliable.csv'
2026-06-29T21:10:19,592   adding 'oncoref/data/degenerate-subtype-pairs.csv'
2026-06-29T21:10:19,594   adding 'oncoref/data/disease-state-rules.csv'
2026-06-29T21:10:19,621   adding 'oncoref/data/ensembl-id-aliases.csv'
2026-06-29T21:10:19,625   adding 'oncoref/data/expression-artifact-gene-universe-deltas.csv'
2026-06-29T21:10:19,629   adding 'oncoref/data/expression_sources.yaml'
2026-06-29T21:10:19,632   adding 'oncoref/data/extra-tx-mappings.csv'
2026-06-29T21:10:19,633   adding 'oncoref/data/family-burden-map.csv'
2026-06-29T21:10:19,635   adding 'oncoref/data/fusion-expression-effects.csv'
2026-06-29T21:10:19,637   adding 'oncoref/data/fusion-surrogate-expression.csv'
2026-06-29T21:10:19,639   adding 'oncoref/data/hemoglobin-genes.csv'
2026-06-29T21:10:19,641   adding 'oncoref/data/histone-genes.csv'
2026-06-29T21:10:19,643   adding 'oncoref/data/housekeeping-genes.csv'
2026-06-29T21:10:19,644   adding 'oncoref/data/mitochondrial-genes.csv'
2026-06-29T21:10:19,646   adding 'oncoref/data/narrative-gene-sets.csv'
2026-06-29T21:10:19,687   adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz'
2026-06-29T21:10:19,691   adding 'oncoref/data/nuclear-retained-lncrnas.csv'
2026-06-29T21:10:19,693   adding 'oncoref/data/numt-pseudogenes.csv'
2026-06-29T21:10:19,695   adding 'oncoref/data/proteoform-collapse-overrides.csv'
2026-06-29T21:10:19,697   adding 'oncoref/data/proteoform-groups-genome.csv'
2026-06-29T21:10:19,699   adding 'oncoref/data/proteoform-groups.csv'
2026-06-29T21:10:19,701   adding 'oncoref/data/rare-cancer-fusion-rules.csv'
2026-06-29T21:10:19,702   adding 'oncoref/data/ribosomal-protein-genes.csv'
2026-06-29T21:10:19,709   adding 'oncoref/data/ribosomal-protein-pseudogenes.csv'
2026-06-29T21:10:19,712   adding 'oncoref/data/rrna-and-pseudogenes.csv'
2026-06-29T21:10:19,730   adding 'oncoref/data/small-noncoding-rnas.csv'
2026-06-29T21:10:19,733   adding 'oncoref/data/source-matrices.csv'
2026-06-29T21:10:19,734   adding 'oncoref/data/tissue-burden-map.csv'
2026-06-29T21:10:19,738   adding 'oncoref-1.8.29.dist-info/licenses/LICENSE'
2026-06-29T21:10:19,740   adding 'oncoref-1.8.29.dist-info/METADATA'
2026-06-29T21:10:19,741   adding 'oncoref-1.8.29.dist-info/WHEEL'
2026-06-29T21:10:19,742   adding 'oncoref-1.8.29.dist-info/entry_points.txt'
2026-06-29T21:10:19,743   adding 'oncoref-1.8.29.dist-info/top_level.txt'
2026-06-29T21:10:19,745   adding 'oncoref-1.8.29.dist-info/RECORD'
2026-06-29T21:10:19,765   removing build/bdist.linux-armv7l/wheel
2026-06-29T21:10:19,887   Building wheel for oncoref (pyproject.toml): finished with status 'done'
2026-06-29T21:10:19,922   Created wheel for oncoref: filename=oncoref-1.8.29-py3-none-any.whl size=1680944 sha256=b1f42329c88af2439c405e529f4dabbaf76ec8c58ccceef70776f0dc1f952b2b
2026-06-29T21:10:19,923   Stored in directory: /tmp/pip-ephem-wheel-cache-2mpwn2kl/wheels/b0/98/36/169f9422fb91f0de1cacf213547600c18ebcbf983dde8a8576
2026-06-29T21:10:19,938 Successfully built oncoref
2026-06-29T21:10:19,986 Removed build tracker: '/tmp/pip-build-tracker-2tlzaiju'