2026-06-30T18:17:43,525 Created temporary directory: /tmp/pip-ephem-wheel-cache-rtflg7sz
2026-06-30T18:17:43,527 Created temporary directory: /tmp/pip-build-tracker-hst3c3l2
2026-06-30T18:17:43,527 Initialized build tracking at /tmp/pip-build-tracker-hst3c3l2
2026-06-30T18:17:43,528 Created build tracker: /tmp/pip-build-tracker-hst3c3l2
2026-06-30T18:17:43,528 Entered build tracker: /tmp/pip-build-tracker-hst3c3l2
2026-06-30T18:17:43,529 Created temporary directory: /tmp/pip-wheel-x778wfuo
2026-06-30T18:17:43,532 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-30T18:17:43,534 Created temporary directory: /tmp/pip-ephem-wheel-cache-9oqihdu7
2026-06-30T18:17:43,556 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-30T18:17:43,559 2 location(s) to search for versions of oncoref:
2026-06-30T18:17:43,559 * https://pypi.org/simple/oncoref/
2026-06-30T18:17:43,559 * https://www.piwheels.org/simple/oncoref/
2026-06-30T18:17:43,560 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/
2026-06-30T18:17:43,561 Getting page https://pypi.org/simple/oncoref/
2026-06-30T18:17:43,562 Found index url https://pypi.org/simple
2026-06-30T18:17:43,815 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json
2026-06-30T18:17:43,829   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,830   Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0
2026-06-30T18:17:43,831   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,832   Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0
2026-06-30T18:17:43,833   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,834   Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0
2026-06-30T18:17:43,835   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,836   Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1
2026-06-30T18:17:43,836   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,837   Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2
2026-06-30T18:17:43,838   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,839   Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3
2026-06-30T18:17:43,840   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,841   Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4
2026-06-30T18:17:43,842   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,842   Found link https://files.pythonhosted.org/packages/0a/e2/de65c5e1582fe009b3f640e94e6ecd5cf2f139d490750374cdad3af0e14c/oncoref-1.8.5.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.5
2026-06-30T18:17:43,843   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/71/92/3cd4d589831ccb90b12732347718e54d84097a6c780ced1810f52e3b302a/oncoref-1.8.6-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,844   Found link https://files.pythonhosted.org/packages/fe/29/0640ff92bcb51841b69a4d04ccf94a5173a18ee10c54786b959026ca4362/oncoref-1.8.6.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.6
2026-06-30T18:17:43,845   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f2/29/f869b37c956b8836b9c9b45e89ab7dad98a93270e6bd395b45a7ca5657ad/oncoref-1.8.7-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,846   Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7
2026-06-30T18:17:43,846   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,847   Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8
2026-06-30T18:17:43,848   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,849   Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9
2026-06-30T18:17:43,850   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,851   Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10
2026-06-30T18:17:43,852   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,853   Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11
2026-06-30T18:17:43,853   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,854   Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12
2026-06-30T18:17:43,855   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,856   Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13
2026-06-30T18:17:43,856   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2f/c1/703bd890ae830651eae083a090278ba8254ac89bae1c0bfefed061c3e2eb/oncoref-1.8.14-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,857   Found link https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.14
2026-06-30T18:17:43,858   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ac/42/91b2b04455fb29d40afb47dc7ee2eae30218a24c4d540d95191d31f6f98e/oncoref-1.8.15-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,859   Found link https://files.pythonhosted.org/packages/26/8a/9cb4754077d37b89ed3ee3781cffdb03040d90286aaaedacba8cb238d7c3/oncoref-1.8.15.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.15
2026-06-30T18:17:43,860   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/3f/1af50bb6d208ada32a29b7e3ed29169932b97542b48e765c1d96130b7f3d/oncoref-1.8.16-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,861   Found link https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.16
2026-06-30T18:17:43,862   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/77/d24a0f29e452b83e5d6a1bfb366c72b8407bc7505d94280ca3ba609de07e/oncoref-1.8.17-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,863   Found link https://files.pythonhosted.org/packages/c1/e7/7f753f3a4b044b3f3bc8f75b75ef24df1c9b77d3f0742ee37fc243441830/oncoref-1.8.17.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.17
2026-06-30T18:17:43,864   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/04/55/5f2c1936263bdbe9a95a7c82d673eae8724b3eb1b99d4c1c33eadfc6edf5/oncoref-1.8.18-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,865   Found link https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.18
2026-06-30T18:17:43,866   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/07/35/638b350ebd4fd975c88adb9168c250b482cf549a77381cced479cdf3923f/oncoref-1.8.19-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,866   Found link https://files.pythonhosted.org/packages/39/5a/c1460247c124e495fc20ae3e76a760ee67da5f7263531a1093ae4cdc1983/oncoref-1.8.19.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.19
2026-06-30T18:17:43,867   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/eb/2d/584fe29a9ae1a336ec8dc1dadc08e60e036de296b703c428b69aafb97ee7/oncoref-1.8.20-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,868   Found link https://files.pythonhosted.org/packages/aa/5b/9be05673420aae6512388fb70ff3b3802ca0bca46179299c93e9bdea7cb1/oncoref-1.8.20.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.20
2026-06-30T18:17:43,869   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/c2/b8/d13577ba1cd9a054203201a66d94d70c8c71156e5afaf85c557c52a8a4c8/oncoref-1.8.21-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,869   Found link https://files.pythonhosted.org/packages/f6/9d/ca143333eade742f336f48670b06ee9849c2c31d9322c5c7bb6979a191a3/oncoref-1.8.21.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.21
2026-06-30T18:17:43,870   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/59/bd/c385a7916a14b417f607eecb73034e821165e8f650435947ecf8845c5161/oncoref-1.8.22-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,871   Found link https://files.pythonhosted.org/packages/a7/cc/f9b0c987a30c7928b99e165f2bd778a677eb1433eb0802911d6678139aeb/oncoref-1.8.22.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.22
2026-06-30T18:17:43,872   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/e7/f2/ae5d03f1bf678a753916310b281effcbc4cf19a4e0e6995437966ad6ac91/oncoref-1.8.23-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,873   Found link https://files.pythonhosted.org/packages/be/8c/f6a66a8ae2ba39778734de5548a77246995f30c636670ff2ca38094ff59e/oncoref-1.8.23.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.23
2026-06-30T18:17:43,874   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/8d/ca3b2c8c719845b8c38ff91118723bb2c965155ac0a49af2ff8ceff50a56/oncoref-1.8.24-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,875   Found link https://files.pythonhosted.org/packages/62/f6/e9a386e5a93bd80d065addcc4050fefd3bb6e8b55b75ea3ba88025f95255/oncoref-1.8.24.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.24
2026-06-30T18:17:43,875   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/8d/48/dd730548afc982ad049e59c8084f8847a0c49e3d0e288d7b0c299abdad9b/oncoref-1.8.25-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,876   Found link https://files.pythonhosted.org/packages/fe/48/42ff82844f2c14e04799c0441651a2c9b147da3707e4924129d0352b5525/oncoref-1.8.25.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.25
2026-06-30T18:17:43,877   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/15/fc/76fa123a1303b6db49cade8bf9985e206e992b14ad3d49b446acf8ee9516/oncoref-1.8.26-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,878   Found link https://files.pythonhosted.org/packages/e7/5c/785ef9ba1884cb96cc5c5bb24da2b2b7d5836404cefa2cc6b9589707d264/oncoref-1.8.26.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.26
2026-06-30T18:17:43,879   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/1f/6e/9d45c29e74006d28dd4da8b329a4b939dd7bfa89496792f969392734b44a/oncoref-1.8.27-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,880   Found link https://files.pythonhosted.org/packages/b1/35/566b316d8325fc6cf07c3cb72c7432a37302396da59a1b78dbd75c3c8e2b/oncoref-1.8.27.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.27
2026-06-30T18:17:43,880   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/97/00/35532e9bdea879c0aa0ccabcdb2cd219ebb85a68b2217df7ba7b4e690ae7/oncoref-1.8.28-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,881   Found link https://files.pythonhosted.org/packages/13/9d/8de61415a5fc5f654ab220434460585d470cbad471be6847a7ab9df31f8e/oncoref-1.8.28.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.28
2026-06-30T18:17:43,882   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/a0/67/d6b656f6dac57592c3159a801f6d02a92a2ce18ba32ccd5706b5207e164a/oncoref-1.8.29-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,883   Found link https://files.pythonhosted.org/packages/9c/6c/71ee87713c388d513cd17e32e306ca91bc88c047b888a2149d6eecc47e4a/oncoref-1.8.29.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.29
2026-06-30T18:17:43,883   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/43/a4/227ff6f4ae0f3c95e3b0d9d5f358041743d97033af86445a782d45424f0b/oncoref-1.8.30-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,884   Found link https://files.pythonhosted.org/packages/28/4e/ab75be7ef079531e7fe717c0c4bc798601a0525d08bfee0985d0e6b734d0/oncoref-1.8.30.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.30
2026-06-30T18:17:43,885   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/50/a5/5b6544be002cdcf826b2408f79eaad8b9b940cba455d1e12e1fa3badc5fe/oncoref-1.8.31-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,886   Found link https://files.pythonhosted.org/packages/14/35/dc2ee7a73802df21190d3b8b3f810d17ce4e6f1b4d43f798bde2cc4a5b98/oncoref-1.8.31.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.31
2026-06-30T18:17:43,887   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/d0/90/6cffd5a0d4e6f387eb7daae20018e37fa319d697b26fee580588a962a381/oncoref-1.8.32-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,888   Found link https://files.pythonhosted.org/packages/58/e5/2f07ec3932a989b40e3b1bd2ca1582ffa5703d86a473d0d3b47ec5a1d687/oncoref-1.8.32.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.32
2026-06-30T18:17:43,889   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/bd/f5/cdffee48e3d6ae42ed29340c534bb367b2e5238aa5b3d5d69f1498982f60/oncoref-1.8.33-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,889   Found link https://files.pythonhosted.org/packages/83/c3/5562c66c8c1ea7d9a4704b7fbab2b342227daf1ebb8d06e5b0c6a2370734/oncoref-1.8.33.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.33
2026-06-30T18:17:43,890   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/bb/25/bfd51f9dd4c0cbefb0c5e8a8e62f24240d7a9258ffc20fd7b13580ba8ff6/oncoref-1.8.34-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,891   Found link https://files.pythonhosted.org/packages/25/0d/6faf9afb3d294be540966dacf064b4535363addf9526a5b664a5f82d3e17/oncoref-1.8.34.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.34
2026-06-30T18:17:43,892   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/0e/e3/af9661216ef35c7927ff036c6605d5313db77b7c24d4c517a63e895e7d3b/oncoref-1.8.35-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,893   Found link https://files.pythonhosted.org/packages/e9/c0/76a4f7b46f10f6dc0e747ccc5d47a576650f8decf252c2ada34cbbe840e2/oncoref-1.8.35.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.35
2026-06-30T18:17:43,893   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/05/d1/1153502ba857ef5320c4a8d30fddd60080cda85aa6d45b1ae20b1e412388/oncoref-1.8.36-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:43,894   Found link https://files.pythonhosted.org/packages/55/9a/84dbbc6ea3ae2ff8aac0f3aaa8ae54e02d8d0a0087a8360557a8a1286b95/oncoref-1.8.36.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.36
2026-06-30T18:17:43,895 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/
2026-06-30T18:17:43,896 Getting page https://www.piwheels.org/simple/oncoref/
2026-06-30T18:17:43,897 Found index url https://www.piwheels.org/simple
2026-06-30T18:17:44,195 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html
2026-06-30T18:17:44,207   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.35-py3-none-any.whl#sha256=5d0045ef11d765734efdbb1ae2346fa02ddff4d0a5ec3dbeb94aa0568110234f (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,207   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.34-py3-none-any.whl#sha256=8d79247154cce22babf98f4efc3404005053188d0e050da5288ac195e6b4ca06 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,208   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.33-py3-none-any.whl#sha256=8077c9247dd21827608ed89351c0a5e9b9f77adc1fa0c3a73a9341a023cb5453 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,209   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.32-py3-none-any.whl#sha256=bf508ea11e75e6f65e41c53cba61fdb7de829a45a387ab5831e0a9a81e870b00 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,209   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.31-py3-none-any.whl#sha256=07d66f0311f7454f8961f1ce758deede616efb82de1645c7eb49af3eea5eeb8b (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,210   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.30-py3-none-any.whl#sha256=a441a67bb36d1437452a7f4dd3d2c6d33686d0aeb28276f1298bc3db28cb8fdf (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,210   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.29-py3-none-any.whl#sha256=b1f42329c88af2439c405e529f4dabbaf76ec8c58ccceef70776f0dc1f952b2b (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,211   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.28-py3-none-any.whl#sha256=cc2983644df05ded88c207ab066302a8a8669e4810fb2f6fa841b9816d0d45d0 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,212   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.27-py3-none-any.whl#sha256=8a003ee62f52d11477b06f1b57b7380ac5407521c557a7c6e3d454d64654d473 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,212   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.26-py3-none-any.whl#sha256=577cc03d90c5cc790909fba9f7a20fcbb5a1825a744ad3917b8314b33d0dc71d (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,213   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.25-py3-none-any.whl#sha256=af07dfe64ba72883f3223dd56f5b55a3370d8deb1d781fcff373e4aa696cadd2 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,213   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.24-py3-none-any.whl#sha256=37eddc72a25836c04689e807b2e937964e7758be69a3c63ef6f43b079edd274b (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,214   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.23-py3-none-any.whl#sha256=93e12c751d36e6067e12446d95075d3f1529e62cabab5ddafc06717951f4b978 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,214   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.22-py3-none-any.whl#sha256=f9f6af90f23f91ed83e606231a0b8288143792f632998acf8e42adb9b41fa572 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,215   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.21-py3-none-any.whl#sha256=ac7131b0f8f46c73d142fc08042a64e251ad3df564bfc62308d462affc18f008 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,215   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.20-py3-none-any.whl#sha256=02858d3770dc0077ec2663efc1ab8ae19e982b234caa93e7035f95670b0d174e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,216   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.19-py3-none-any.whl#sha256=bbbd40de31c902830f47fa96432cc1984e1164d334e95a40633e18ec8caaa41e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,216   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.18-py3-none-any.whl#sha256=91f223a369ce125813e0c188cafd3277343fd2ca1caa4d34a5394ba1cb195781 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,217   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.17-py3-none-any.whl#sha256=5fa3e3356c1574425d42aebe7d135c933ff623b539736554634a762eeaab4a29 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,218   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.16-py3-none-any.whl#sha256=9defcd77c3360e0675a10c0b8de4a1784c19f227a985079b95e21e462de63e97 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,218   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.15-py3-none-any.whl#sha256=4dcd40c2e5c10b8f8be0d8df8489b5f05153d465eb43ddf7f9dc158bbe6b1de3 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,219   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.14-py3-none-any.whl#sha256=ac41cf84ca97c695a15f40326738750e2762e39f366bf99300777803874b26da (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,219   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.13-py3-none-any.whl#sha256=91c3e1fa8448033a913075559a2ee2b76fcbad64e20aeb7696484a9a5619dbef (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,220   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.12-py3-none-any.whl#sha256=2a0e59477b8939fc63d4a78f31b0b793fb2f49ea2aab861d853fa8479ccf9608 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,221   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.11-py3-none-any.whl#sha256=602ac0deb73739e65dfb65105b23357a94a67eb9e1faac0880bff5203ed4a818 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,221   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.10-py3-none-any.whl#sha256=3e789fd35641073e8afc8885dcef12d74a2323c2e0c8dad7b5e369392675e83a (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,222   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.9-py3-none-any.whl#sha256=2415de57054126a885d64b626bbb12657ce55d0791a686b7aba85fd8b784d399 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,222   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.8-py3-none-any.whl#sha256=f1b7351039ce534abc9d36a03b53fd9479b1629b4a6fd8698bc500162f1cd362 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,223   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.7-py3-none-any.whl#sha256=84f80af8afa25d02579e67983b74fd2e515df1ce6d0cb602ecb6808e994f8f63 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,223   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.6-py3-none-any.whl#sha256=460f281fc846e410a5992e3a87193febdfac8bf81f3e5497a5e5d72ae58176bf (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,224   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.5-py3-none-any.whl#sha256=cfedb20aa2c2593dfb010bc01a13d5b6c732ec5cf013fd70b65c71d1adb71f7e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,225   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,225   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,226   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,226   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,227   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,227   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,228   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-06-30T18:17:44,229 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/
2026-06-30T18:17:44,229 Skipping link: not a file: https://pypi.org/simple/oncoref/
2026-06-30T18:17:44,253 Given no hashes to check 1 links for project 'oncoref': discarding no candidates
2026-06-30T18:17:44,273 Collecting oncoref==1.8.36
2026-06-30T18:17:44,275   Created temporary directory: /tmp/pip-unpack-84zo3l_s
2026-06-30T18:17:44,604   Downloading oncoref-1.8.36.tar.gz (1.7 MB)
2026-06-30T18:17:45,566   Added oncoref==1.8.36 from https://files.pythonhosted.org/packages/55/9a/84dbbc6ea3ae2ff8aac0f3aaa8ae54e02d8d0a0087a8360557a8a1286b95/oncoref-1.8.36.tar.gz to build tracker '/tmp/pip-build-tracker-hst3c3l2'
2026-06-30T18:17:45,576   Created temporary directory: /tmp/pip-build-env-7l4fn8fp
2026-06-30T18:17:45,583   Installing build dependencies: started
2026-06-30T18:17:45,585   Running command pip subprocess to install build dependencies
2026-06-30T18:17:46,994   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-06-30T18:17:47,449   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-06-30T18:17:47,473   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-06-30T18:17:49,506   Collecting setuptools>=61.0
2026-06-30T18:17:49,507     Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata
2026-06-30T18:17:49,522     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl.metadata (6.5 kB)
2026-06-30T18:17:49,756   Collecting wheel
2026-06-30T18:17:49,757     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-06-30T18:17:49,770     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-06-30T18:17:49,955   Collecting packaging>=24.0
2026-06-30T18:17:49,956     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-06-30T18:17:49,969     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-06-30T18:17:50,159   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-30T18:17:50,180   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-30T18:17:50,265   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-30T18:17:50,301   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-06-30T18:17:50,325   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-06-30T18:17:50,466   Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-06-30T18:17:53,453   Installing collected packages: setuptools, packaging, wheel
2026-06-30T18:17:57,001     Creating /tmp/pip-build-env-7l4fn8fp/overlay/local/bin
2026-06-30T18:17:57,003     changing mode of /tmp/pip-build-env-7l4fn8fp/overlay/local/bin/wheel to 755
2026-06-30T18:17:57,023   Successfully installed packaging-26.2 setuptools-82.0.1 wheel-0.47.0
2026-06-30T18:17:57,312   Installing build dependencies: finished with status 'done'
2026-06-30T18:17:57,318   Getting requirements to build wheel: started
2026-06-30T18:17:57,319   Running command Getting requirements to build wheel
2026-06-30T18:17:58,217   running egg_info
2026-06-30T18:17:58,222   writing oncoref.egg-info/PKG-INFO
2026-06-30T18:17:58,228   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-30T18:17:58,230   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-30T18:17:58,232   writing requirements to oncoref.egg-info/requires.txt
2026-06-30T18:17:58,234   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-30T18:17:58,267   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-30T18:17:58,277   reading manifest template 'MANIFEST.in'
2026-06-30T18:17:58,278   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-30T18:17:58,279   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-30T18:17:58,281   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-30T18:17:58,282   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-30T18:17:58,283   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-30T18:17:58,283   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-30T18:17:58,284   adding license file 'LICENSE'
2026-06-30T18:17:58,292   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-30T18:17:58,390   Getting requirements to build wheel: finished with status 'done'
2026-06-30T18:17:58,394   Created temporary directory: /tmp/pip-modern-metadata-t5pg0894
2026-06-30T18:17:58,396   Preparing metadata (pyproject.toml): started
2026-06-30T18:17:58,397   Running command Preparing metadata (pyproject.toml)
2026-06-30T18:17:59,040   running dist_info
2026-06-30T18:17:59,051   creating /tmp/pip-modern-metadata-t5pg0894/oncoref.egg-info
2026-06-30T18:17:59,052   writing /tmp/pip-modern-metadata-t5pg0894/oncoref.egg-info/PKG-INFO
2026-06-30T18:17:59,057   writing dependency_links to /tmp/pip-modern-metadata-t5pg0894/oncoref.egg-info/dependency_links.txt
2026-06-30T18:17:59,059   writing entry points to /tmp/pip-modern-metadata-t5pg0894/oncoref.egg-info/entry_points.txt
2026-06-30T18:17:59,061   writing requirements to /tmp/pip-modern-metadata-t5pg0894/oncoref.egg-info/requires.txt
2026-06-30T18:17:59,062   writing top-level names to /tmp/pip-modern-metadata-t5pg0894/oncoref.egg-info/top_level.txt
2026-06-30T18:17:59,064   writing manifest file '/tmp/pip-modern-metadata-t5pg0894/oncoref.egg-info/SOURCES.txt'
2026-06-30T18:17:59,096   reading manifest file '/tmp/pip-modern-metadata-t5pg0894/oncoref.egg-info/SOURCES.txt'
2026-06-30T18:17:59,098   reading manifest template 'MANIFEST.in'
2026-06-30T18:17:59,100   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-30T18:17:59,101   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-30T18:17:59,102   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-30T18:17:59,103   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-30T18:17:59,103   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-30T18:17:59,104   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-30T18:17:59,105   adding license file 'LICENSE'
2026-06-30T18:17:59,111   writing manifest file '/tmp/pip-modern-metadata-t5pg0894/oncoref.egg-info/SOURCES.txt'
2026-06-30T18:17:59,113   creating '/tmp/pip-modern-metadata-t5pg0894/oncoref-1.8.36.dist-info'
2026-06-30T18:17:59,239   Preparing metadata (pyproject.toml): finished with status 'done'
2026-06-30T18:17:59,244   Source in /tmp/pip-wheel-x778wfuo/oncoref_d6059d7ca1874a6fa67be6528c7ebdd2 has version 1.8.36, which satisfies requirement oncoref==1.8.36 from https://files.pythonhosted.org/packages/55/9a/84dbbc6ea3ae2ff8aac0f3aaa8ae54e02d8d0a0087a8360557a8a1286b95/oncoref-1.8.36.tar.gz
2026-06-30T18:17:59,245   Removed oncoref==1.8.36 from https://files.pythonhosted.org/packages/55/9a/84dbbc6ea3ae2ff8aac0f3aaa8ae54e02d8d0a0087a8360557a8a1286b95/oncoref-1.8.36.tar.gz from build tracker '/tmp/pip-build-tracker-hst3c3l2'
2026-06-30T18:17:59,251 Created temporary directory: /tmp/pip-unpack-erq3i3i1
2026-06-30T18:17:59,252 Building wheels for collected packages: oncoref
2026-06-30T18:17:59,256   Created temporary directory: /tmp/pip-wheel-t5k353q3
2026-06-30T18:17:59,257   Destination directory: /tmp/pip-wheel-t5k353q3
2026-06-30T18:17:59,259   Building wheel for oncoref (pyproject.toml): started
2026-06-30T18:17:59,260   Running command Building wheel for oncoref (pyproject.toml)
2026-06-30T18:17:59,890   running bdist_wheel
2026-06-30T18:17:59,908   running build
2026-06-30T18:17:59,909   running build_py
2026-06-30T18:17:59,916   creating build/lib/oncoref
2026-06-30T18:17:59,918   copying oncoref/expression.py -> build/lib/oncoref
2026-06-30T18:17:59,924   copying oncoref/cta_coverage.py -> build/lib/oncoref
2026-06-30T18:17:59,925   copying oncoref/antigen_coverage.py -> build/lib/oncoref
2026-06-30T18:17:59,928   copying oncoref/cli.py -> build/lib/oncoref
2026-06-30T18:17:59,930   copying oncoref/catalog.py -> build/lib/oncoref
2026-06-30T18:17:59,933   copying oncoref/cta_curation_plots.py -> build/lib/oncoref
2026-06-30T18:17:59,936   copying oncoref/response_signatures.py -> build/lib/oncoref
2026-06-30T18:17:59,938   copying oncoref/gene_qc.py -> build/lib/oncoref
2026-06-30T18:17:59,941   copying oncoref/cancer_ontology.py -> build/lib/oncoref
2026-06-30T18:17:59,943   copying oncoref/coverage.py -> build/lib/oncoref
2026-06-30T18:17:59,946   copying oncoref/samples.py -> build/lib/oncoref
2026-06-30T18:17:59,948   copying oncoref/expression_engine.py -> build/lib/oncoref
2026-06-30T18:17:59,950   copying oncoref/cohorts.py -> build/lib/oncoref
2026-06-30T18:17:59,952   copying oncoref/tmb.py -> build/lib/oncoref
2026-06-30T18:17:59,955   copying oncoref/plots.py -> build/lib/oncoref
2026-06-30T18:17:59,959   copying oncoref/genome.py -> build/lib/oncoref
2026-06-30T18:17:59,961   copying oncoref/expression_builders.py -> build/lib/oncoref
2026-06-30T18:17:59,964   copying oncoref/gene_families.py -> build/lib/oncoref
2026-06-30T18:17:59,967   copying oncoref/proteoforms.py -> build/lib/oncoref
2026-06-30T18:17:59,969   copying oncoref/cta_tissues.py -> build/lib/oncoref
2026-06-30T18:17:59,972   copying oncoref/load_dataset.py -> build/lib/oncoref
2026-06-30T18:17:59,974   copying oncoref/incidence.py -> build/lib/oncoref
2026-06-30T18:17:59,977   copying oncoref/fusions.py -> build/lib/oncoref
2026-06-30T18:17:59,979   copying oncoref/cancer_genes.py -> build/lib/oncoref
2026-06-30T18:17:59,982   copying oncoref/data_bundle.py -> build/lib/oncoref
2026-06-30T18:17:59,985   copying oncoref/apd1.py -> build/lib/oncoref
2026-06-30T18:17:59,987   copying oncoref/cta_peptides.py -> build/lib/oncoref
2026-06-30T18:17:59,989   copying oncoref/cancer_types.py -> build/lib/oncoref
2026-06-30T18:17:59,993   copying oncoref/cta_regen.py -> build/lib/oncoref
2026-06-30T18:17:59,996   copying oncoref/data_manifest.py -> build/lib/oncoref
2026-06-30T18:17:59,999   copying oncoref/peptides.py -> build/lib/oncoref
2026-06-30T18:18:00,001   copying oncoref/__init__.py -> build/lib/oncoref
2026-06-30T18:18:00,004   copying oncoref/gene_ids.py -> build/lib/oncoref
2026-06-30T18:18:00,006   copying oncoref/ici_response.py -> build/lib/oncoref
2026-06-30T18:18:00,009   copying oncoref/hpa.py -> build/lib/oncoref
2026-06-30T18:18:00,011   copying oncoref/expression_registry.py -> build/lib/oncoref
2026-06-30T18:18:00,013   copying oncoref/cta.py -> build/lib/oncoref
2026-06-30T18:18:00,016   copying oncoref/reference_data.py -> build/lib/oncoref
2026-06-30T18:18:00,019   copying oncoref/source_matrices.py -> build/lib/oncoref
2026-06-30T18:18:00,021   copying oncoref/version.py -> build/lib/oncoref
2026-06-30T18:18:00,023   copying oncoref/ici.py -> build/lib/oncoref
2026-06-30T18:18:00,026   copying oncoref/normalization.py -> build/lib/oncoref
2026-06-30T18:18:00,041   creating build/lib/oncoref/data
2026-06-30T18:18:00,042   copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,045   copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,051   copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,055   copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,058   copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,060   copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,062   copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,066   copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,068   copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,071   copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,074   copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,079   copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,082   copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,084   copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,087   copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,089   copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,091   copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,094   copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,097   copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,105   copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,107   copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,110   copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,114   copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,116   copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,119   copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,122   copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,124   copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,127   copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,129   copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,132   copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,135   copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,140   copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,143   copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,145   copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,147   copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,150   copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,153   copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,155   copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,161   copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,163   copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,166   copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,169   copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,172   copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,174   copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,177   copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,180   copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,183   copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,186   copying oncoref/data/expression-artifact-gene-universe-deltas.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,189   copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,191   copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,196   copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,199   copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,201   copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,204   copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data
2026-06-30T18:18:00,207   copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data
2026-06-30T18:18:00,221   copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data
2026-06-30T18:18:00,232   copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data
2026-06-30T18:18:00,241   copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data
2026-06-30T18:18:00,255   installing to build/bdist.linux-armv7l/wheel
2026-06-30T18:18:00,256   running install
2026-06-30T18:18:00,279   running install_lib
2026-06-30T18:18:00,285   creating build/bdist.linux-armv7l/wheel
2026-06-30T18:18:00,288   creating build/bdist.linux-armv7l/wheel/oncoref
2026-06-30T18:18:00,289   copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,294   copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,296   copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,298   copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,301   copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,303   copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,306   copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,308   copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,310   copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,312   copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,315   copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,317   copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,320   copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,322   copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,324   copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,327   copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,330   copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,333   copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,335   copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,337   copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,340   copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,342   copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,345   copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,347   copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,349   copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,351   copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,353   copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,355   copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,358   copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,362   creating build/bdist.linux-armv7l/wheel/oncoref/data
2026-06-30T18:18:00,363   copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,366   copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,371   copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,374   copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,377   copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,379   copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,381   copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,383   copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,433   copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,435   copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,438   copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,442   copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,445   copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,447   copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,449   copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,451   copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,453   copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,455   copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,457   copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,465   copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,467   copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,470   copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,473   copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,476   copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,478   copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,481   copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,483   copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,485   copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,502   copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,505   copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,506   copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,508   copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,511   copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,522   copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,525   copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,527   copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,529   copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,542   copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,545   copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,548   copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,550   copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,556   copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,558   copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,560   copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,562   copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,565   copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,568   copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,569   copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,571   copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,574   copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,577   copying build/lib/oncoref/data/expression-artifact-gene-universe-deltas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,579   copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,581   copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,585   copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,587   copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,589   copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,592   copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,602   copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-06-30T18:18:00,604   copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,607   copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,610   copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,614   copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,616   copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,619   copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,621   copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,623   copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,626   copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,629   copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,632   copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,634   copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,637   copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-06-30T18:18:00,640   running install_egg_info
2026-06-30T18:18:00,649   running egg_info
2026-06-30T18:18:00,654   writing oncoref.egg-info/PKG-INFO
2026-06-30T18:18:00,660   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-06-30T18:18:00,661   writing entry points to oncoref.egg-info/entry_points.txt
2026-06-30T18:18:00,663   writing requirements to oncoref.egg-info/requires.txt
2026-06-30T18:18:00,665   writing top-level names to oncoref.egg-info/top_level.txt
2026-06-30T18:18:00,684   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-30T18:18:00,693   reading manifest template 'MANIFEST.in'
2026-06-30T18:18:00,695   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-06-30T18:18:00,696   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-06-30T18:18:00,697   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-06-30T18:18:00,699   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-06-30T18:18:00,700   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-06-30T18:18:00,701   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-06-30T18:18:00,702   adding license file 'LICENSE'
2026-06-30T18:18:00,710   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-06-30T18:18:00,712   Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.36-py3.11.egg-info
2026-06-30T18:18:00,725   running install_scripts
2026-06-30T18:18:00,738   creating build/bdist.linux-armv7l/wheel/oncoref-1.8.36.dist-info/WHEEL
2026-06-30T18:18:00,741   creating '/tmp/pip-wheel-t5k353q3/.tmp-4n3urxks/oncoref-1.8.36-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-06-30T18:18:00,745   adding 'oncoref/__init__.py'
2026-06-30T18:18:00,746   adding 'oncoref/antigen_coverage.py'
2026-06-30T18:18:00,748   adding 'oncoref/apd1.py'
2026-06-30T18:18:00,750   adding 'oncoref/cancer_genes.py'
2026-06-30T18:18:00,751   adding 'oncoref/cancer_ontology.py'
2026-06-30T18:18:00,758   adding 'oncoref/cancer_types.py'
2026-06-30T18:18:00,761   adding 'oncoref/catalog.py'
2026-06-30T18:18:00,764   adding 'oncoref/cli.py'
2026-06-30T18:18:00,766   adding 'oncoref/cohorts.py'
2026-06-30T18:18:00,769   adding 'oncoref/coverage.py'
2026-06-30T18:18:00,773   adding 'oncoref/cta.py'
2026-06-30T18:18:00,775   adding 'oncoref/cta_coverage.py'
2026-06-30T18:18:00,777   adding 'oncoref/cta_curation_plots.py'
2026-06-30T18:18:00,779   adding 'oncoref/cta_peptides.py'
2026-06-30T18:18:00,783   adding 'oncoref/cta_regen.py'
2026-06-30T18:18:00,786   adding 'oncoref/cta_tissues.py'
2026-06-30T18:18:00,791   adding 'oncoref/data_bundle.py'
2026-06-30T18:18:00,795   adding 'oncoref/data_manifest.py'
2026-06-30T18:18:00,815   adding 'oncoref/expression.py'
2026-06-30T18:18:00,820   adding 'oncoref/expression_builders.py'
2026-06-30T18:18:00,825   adding 'oncoref/expression_engine.py'
2026-06-30T18:18:00,827   adding 'oncoref/expression_registry.py'
2026-06-30T18:18:00,830   adding 'oncoref/fusions.py'
2026-06-30T18:18:00,834   adding 'oncoref/gene_families.py'
2026-06-30T18:18:00,836   adding 'oncoref/gene_ids.py'
2026-06-30T18:18:00,839   adding 'oncoref/gene_qc.py'
2026-06-30T18:18:00,842   adding 'oncoref/genome.py'
2026-06-30T18:18:00,844   adding 'oncoref/hpa.py'
2026-06-30T18:18:00,850   adding 'oncoref/ici.py'
2026-06-30T18:18:00,852   adding 'oncoref/ici_response.py'
2026-06-30T18:18:00,855   adding 'oncoref/incidence.py'
2026-06-30T18:18:00,858   adding 'oncoref/load_dataset.py'
2026-06-30T18:18:00,865   adding 'oncoref/normalization.py'
2026-06-30T18:18:00,868   adding 'oncoref/peptides.py'
2026-06-30T18:18:00,877   adding 'oncoref/plots.py'
2026-06-30T18:18:00,880   adding 'oncoref/proteoforms.py'
2026-06-30T18:18:00,882   adding 'oncoref/reference_data.py'
2026-06-30T18:18:00,884   adding 'oncoref/response_signatures.py'
2026-06-30T18:18:00,885   adding 'oncoref/samples.py'
2026-06-30T18:18:00,887   adding 'oncoref/source_matrices.py'
2026-06-30T18:18:00,889   adding 'oncoref/tmb.py'
2026-06-30T18:18:00,891   adding 'oncoref/version.py'
2026-06-30T18:18:00,895   adding 'oncoref/data/cancer-apd1-response.csv'
2026-06-30T18:18:00,896   adding 'oncoref/data/cancer-code-burden-map.csv'
2026-06-30T18:18:00,898   adding 'oncoref/data/cancer-cohort-aggregates.csv'
2026-06-30T18:18:00,904   adding 'oncoref/data/cancer-driver-genes.csv'
2026-06-30T18:18:00,907   adding 'oncoref/data/cancer-driver-variants.csv'
2026-06-30T18:18:00,909   adding 'oncoref/data/cancer-expression-source-candidates.csv'
2026-06-30T18:18:00,910   adding 'oncoref/data/cancer-frameshift-burden.csv'
2026-06-30T18:18:00,914   adding 'oncoref/data/cancer-fusions.csv'
2026-06-30T18:18:00,931   adding 'oncoref/data/cancer-ici-response-estimates.csv'
2026-06-30T18:18:00,935   adding 'oncoref/data/cancer-ici-response.csv'
2026-06-30T18:18:00,937   adding 'oncoref/data/cancer-incidence-mortality.csv'
2026-06-30T18:18:00,951   adding 'oncoref/data/cancer-key-genes.csv'
2026-06-30T18:18:00,954   adding 'oncoref/data/cancer-lineage-group-overrides.csv'
2026-06-30T18:18:00,955   adding 'oncoref/data/cancer-lineage-groups.csv'
2026-06-30T18:18:00,956   adding 'oncoref/data/cancer-normal-tissue-map.csv'
2026-06-30T18:18:00,985   adding 'oncoref/data/cancer-reference-expression-samples.csv.gz'
2026-06-30T18:18:00,989   adding 'oncoref/data/cancer-response-signatures.csv'
2026-06-30T18:18:00,990   adding 'oncoref/data/cancer-subtype-groupings.csv'
2026-06-30T18:18:01,001   adding 'oncoref/data/cancer-testis-antigens.csv'
2026-06-30T18:18:01,004   adding 'oncoref/data/cancer-tmb.csv'
2026-06-30T18:18:01,007   adding 'oncoref/data/cancer-type-genes.csv'
2026-06-30T18:18:01,011   adding 'oncoref/data/cancer-type-registry.csv'
2026-06-30T18:18:01,012   adding 'oncoref/data/cancer-viral-antigens.csv'
2026-06-30T18:18:01,065   adding 'oncoref/data/canonical-gene-space.csv.gz'
2026-06-30T18:18:01,071   adding 'oncoref/data/cdna-identical-gene-groups.csv'
2026-06-30T18:18:01,075   adding 'oncoref/data/censored-gene-reference-tpm.csv'
2026-06-30T18:18:01,076   adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv'
2026-06-30T18:18:01,087   adding 'oncoref/data/clean-tpm-censored-genes.csv'
2026-06-30T18:18:01,089   adding 'oncoref/data/cohort-registry.csv'
2026-06-30T18:18:01,090   adding 'oncoref/data/cta-candidate-references.csv'
2026-06-30T18:18:01,092   adding 'oncoref/data/cta-ihc-unreliable.csv'
2026-06-30T18:18:01,093   adding 'oncoref/data/degenerate-subtype-pairs.csv'
2026-06-30T18:18:01,094   adding 'oncoref/data/disease-state-rules.csv'
2026-06-30T18:18:01,121   adding 'oncoref/data/ensembl-id-aliases.csv'
2026-06-30T18:18:01,125   adding 'oncoref/data/expression-artifact-gene-universe-deltas.csv'
2026-06-30T18:18:01,129   adding 'oncoref/data/expression_sources.yaml'
2026-06-30T18:18:01,131   adding 'oncoref/data/extra-tx-mappings.csv'
2026-06-30T18:18:01,132   adding 'oncoref/data/family-burden-map.csv'
2026-06-30T18:18:01,134   adding 'oncoref/data/fusion-expression-effects.csv'
2026-06-30T18:18:01,135   adding 'oncoref/data/fusion-surrogate-expression.csv'
2026-06-30T18:18:01,136   adding 'oncoref/data/hemoglobin-genes.csv'
2026-06-30T18:18:01,138   adding 'oncoref/data/histone-genes.csv'
2026-06-30T18:18:01,139   adding 'oncoref/data/housekeeping-genes.csv'
2026-06-30T18:18:01,140   adding 'oncoref/data/mitochondrial-genes.csv'
2026-06-30T18:18:01,142   adding 'oncoref/data/narrative-gene-sets.csv'
2026-06-30T18:18:01,182   adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz'
2026-06-30T18:18:01,186   adding 'oncoref/data/nuclear-retained-lncrnas.csv'
2026-06-30T18:18:01,188   adding 'oncoref/data/numt-pseudogenes.csv'
2026-06-30T18:18:01,189   adding 'oncoref/data/proteoform-collapse-overrides.csv'
2026-06-30T18:18:01,192   adding 'oncoref/data/proteoform-groups-genome.csv'
2026-06-30T18:18:01,193   adding 'oncoref/data/proteoform-groups.csv'
2026-06-30T18:18:01,195   adding 'oncoref/data/rare-cancer-fusion-rules.csv'
2026-06-30T18:18:01,197   adding 'oncoref/data/ribosomal-protein-genes.csv'
2026-06-30T18:18:01,203   adding 'oncoref/data/ribosomal-protein-pseudogenes.csv'
2026-06-30T18:18:01,205   adding 'oncoref/data/rrna-and-pseudogenes.csv'
2026-06-30T18:18:01,224   adding 'oncoref/data/small-noncoding-rnas.csv'
2026-06-30T18:18:01,227   adding 'oncoref/data/source-matrices.csv'
2026-06-30T18:18:01,228   adding 'oncoref/data/tissue-burden-map.csv'
2026-06-30T18:18:01,232   adding 'oncoref-1.8.36.dist-info/licenses/LICENSE'
2026-06-30T18:18:01,234   adding 'oncoref-1.8.36.dist-info/METADATA'
2026-06-30T18:18:01,235   adding 'oncoref-1.8.36.dist-info/WHEEL'
2026-06-30T18:18:01,236   adding 'oncoref-1.8.36.dist-info/entry_points.txt'
2026-06-30T18:18:01,237   adding 'oncoref-1.8.36.dist-info/top_level.txt'
2026-06-30T18:18:01,239   adding 'oncoref-1.8.36.dist-info/RECORD'
2026-06-30T18:18:01,260   removing build/bdist.linux-armv7l/wheel
2026-06-30T18:18:01,381   Building wheel for oncoref (pyproject.toml): finished with status 'done'
2026-06-30T18:18:01,421   Created wheel for oncoref: filename=oncoref-1.8.36-py3-none-any.whl size=1686179 sha256=e6b816f242ba70cbcb80000713c189dcd09c6a6fb528f95e1aaaa1da625a77e5
2026-06-30T18:18:01,422   Stored in directory: /tmp/pip-ephem-wheel-cache-9oqihdu7/wheels/df/03/fd/020030e2fe8605dec8a9e74fc50a998aea444c7b6c6222bc59
2026-06-30T18:18:01,438 Successfully built oncoref
2026-06-30T18:18:01,483 Removed build tracker: '/tmp/pip-build-tracker-hst3c3l2'