2026-07-06T02:24:51,788 Created temporary directory: /tmp/pip-ephem-wheel-cache-bb8t0yap 2026-07-06T02:24:51,790 Created temporary directory: /tmp/pip-build-tracker-79rs5eih 2026-07-06T02:24:51,790 Initialized build tracking at /tmp/pip-build-tracker-79rs5eih 2026-07-06T02:24:51,791 Created build tracker: /tmp/pip-build-tracker-79rs5eih 2026-07-06T02:24:51,791 Entered build tracker: /tmp/pip-build-tracker-79rs5eih 2026-07-06T02:24:51,792 Created temporary directory: /tmp/pip-wheel-91hi2nzr 2026-07-06T02:24:51,795 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-06T02:24:51,797 Created temporary directory: /tmp/pip-ephem-wheel-cache-ly3vm6j1 2026-07-06T02:24:51,819 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-06T02:24:51,822 2 location(s) to search for versions of oncoref: 2026-07-06T02:24:51,822 * https://pypi.org/simple/oncoref/ 2026-07-06T02:24:51,822 * https://www.piwheels.org/simple/oncoref/ 2026-07-06T02:24:51,823 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/ 2026-07-06T02:24:51,824 Getting page https://pypi.org/simple/oncoref/ 2026-07-06T02:24:51,825 Found index url https://pypi.org/simple 2026-07-06T02:24:51,983 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json 2026-07-06T02:24:52,010 Skipping link: No binaries permitted for oncoref: 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2026-07-06T02:24:52,397 Given no hashes to check 1 links for project 'oncoref': discarding no candidates 2026-07-06T02:24:52,415 Collecting oncoref==1.8.47 2026-07-06T02:24:52,417 Created temporary directory: /tmp/pip-unpack-mjzhl2fq 2026-07-06T02:24:52,660 Downloading oncoref-1.8.47.tar.gz (1.8 MB) 2026-07-06T02:24:53,261 Added oncoref==1.8.47 from https://files.pythonhosted.org/packages/c4/b5/8ab55729d7b1d1f081709bd8d6ef1323488e4b9eeab5f12ea63908117185/oncoref-1.8.47.tar.gz to build tracker '/tmp/pip-build-tracker-79rs5eih' 2026-07-06T02:24:53,268 Created temporary directory: /tmp/pip-build-env-j4v_q_5a 2026-07-06T02:24:53,272 Installing build dependencies: started 2026-07-06T02:24:53,274 Running command pip subprocess to install build dependencies 2026-07-06T02:24:54,399 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-07-06T02:24:54,868 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-06T02:24:54,891 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-06T02:24:56,676 Collecting setuptools>=61.0 2026-07-06T02:24:56,696 Using cached setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-06T02:24:56,974 Collecting wheel 2026-07-06T02:24:56,975 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-07-06T02:24:56,988 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-07-06T02:24:57,168 Collecting packaging>=24.0 2026-07-06T02:24:57,169 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-07-06T02:24:57,182 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-07-06T02:24:57,599 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-07-06T02:24:57,632 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-06T02:24:57,715 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-07-06T02:24:57,777 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-06T02:25:00,520 Installing collected packages: setuptools, packaging, wheel 2026-07-06T02:25:03,947 Creating /tmp/pip-build-env-j4v_q_5a/overlay/local/bin 2026-07-06T02:25:03,949 changing mode of /tmp/pip-build-env-j4v_q_5a/overlay/local/bin/wheel to 755 2026-07-06T02:25:03,969 Successfully installed packaging-26.2 setuptools-83.0.0 wheel-0.47.0 2026-07-06T02:25:04,251 Installing build dependencies: finished with status 'done' 2026-07-06T02:25:04,256 Getting requirements to build wheel: started 2026-07-06T02:25:04,258 Running command Getting requirements to build wheel 2026-07-06T02:25:04,935 running egg_info 2026-07-06T02:25:04,941 writing oncoref.egg-info/PKG-INFO 2026-07-06T02:25:04,946 writing dependency_links to oncoref.egg-info/dependency_links.txt 2026-07-06T02:25:04,948 writing entry points to oncoref.egg-info/entry_points.txt 2026-07-06T02:25:04,951 writing requirements to oncoref.egg-info/requires.txt 2026-07-06T02:25:04,952 writing top-level names to oncoref.egg-info/top_level.txt 2026-07-06T02:25:04,986 reading manifest file 'oncoref.egg-info/SOURCES.txt' 2026-07-06T02:25:04,996 reading manifest template 'MANIFEST.in' 2026-07-06T02:25:04,998 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression' 2026-07-06T02:25:04,999 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles' 2026-07-06T02:25:05,000 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives' 2026-07-06T02:25:05,002 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5' 2026-07-06T02:25:05,003 warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv' 2026-07-06T02:25:05,004 warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv' 2026-07-06T02:25:05,005 adding license file 'LICENSE' 2026-07-06T02:25:05,013 writing manifest file 'oncoref.egg-info/SOURCES.txt' 2026-07-06T02:25:05,111 Getting requirements to build wheel: finished with status 'done' 2026-07-06T02:25:05,114 Created temporary directory: /tmp/pip-modern-metadata-kcdyht8r 2026-07-06T02:25:05,117 Preparing metadata (pyproject.toml): started 2026-07-06T02:25:05,118 Running command Preparing metadata (pyproject.toml) 2026-07-06T02:25:05,758 running dist_info 2026-07-06T02:25:05,769 creating /tmp/pip-modern-metadata-kcdyht8r/oncoref.egg-info 2026-07-06T02:25:05,770 writing /tmp/pip-modern-metadata-kcdyht8r/oncoref.egg-info/PKG-INFO 2026-07-06T02:25:05,776 writing dependency_links to /tmp/pip-modern-metadata-kcdyht8r/oncoref.egg-info/dependency_links.txt 2026-07-06T02:25:05,777 writing entry points to /tmp/pip-modern-metadata-kcdyht8r/oncoref.egg-info/entry_points.txt 2026-07-06T02:25:05,780 writing requirements to /tmp/pip-modern-metadata-kcdyht8r/oncoref.egg-info/requires.txt 2026-07-06T02:25:05,781 writing top-level names to /tmp/pip-modern-metadata-kcdyht8r/oncoref.egg-info/top_level.txt 2026-07-06T02:25:05,782 writing manifest file '/tmp/pip-modern-metadata-kcdyht8r/oncoref.egg-info/SOURCES.txt' 2026-07-06T02:25:05,814 reading manifest file '/tmp/pip-modern-metadata-kcdyht8r/oncoref.egg-info/SOURCES.txt' 2026-07-06T02:25:05,816 reading manifest template 'MANIFEST.in' 2026-07-06T02:25:05,818 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression' 2026-07-06T02:25:05,819 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles' 2026-07-06T02:25:05,820 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives' 2026-07-06T02:25:05,821 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5' 2026-07-06T02:25:05,822 warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv' 2026-07-06T02:25:05,823 warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv' 2026-07-06T02:25:05,823 adding license file 'LICENSE' 2026-07-06T02:25:05,829 writing manifest file '/tmp/pip-modern-metadata-kcdyht8r/oncoref.egg-info/SOURCES.txt' 2026-07-06T02:25:05,831 creating '/tmp/pip-modern-metadata-kcdyht8r/oncoref-1.8.47.dist-info' 2026-07-06T02:25:05,955 Preparing metadata (pyproject.toml): finished with status 'done' 2026-07-06T02:25:05,960 Source in /tmp/pip-wheel-91hi2nzr/oncoref_f1d4b554913a409293e4a261c53feb2a has version 1.8.47, which satisfies requirement oncoref==1.8.47 from https://files.pythonhosted.org/packages/c4/b5/8ab55729d7b1d1f081709bd8d6ef1323488e4b9eeab5f12ea63908117185/oncoref-1.8.47.tar.gz 2026-07-06T02:25:05,961 Removed oncoref==1.8.47 from https://files.pythonhosted.org/packages/c4/b5/8ab55729d7b1d1f081709bd8d6ef1323488e4b9eeab5f12ea63908117185/oncoref-1.8.47.tar.gz from build tracker '/tmp/pip-build-tracker-79rs5eih' 2026-07-06T02:25:05,967 Created temporary directory: /tmp/pip-unpack-nkw_vq8k 2026-07-06T02:25:05,968 Building wheels for collected packages: oncoref 2026-07-06T02:25:05,972 Created temporary directory: /tmp/pip-wheel-kwi6u6pl 2026-07-06T02:25:05,973 Destination directory: /tmp/pip-wheel-kwi6u6pl 2026-07-06T02:25:05,975 Building wheel for oncoref (pyproject.toml): started 2026-07-06T02:25:05,977 Running command Building wheel for oncoref (pyproject.toml) 2026-07-06T02:25:06,594 running bdist_wheel 2026-07-06T02:25:06,611 running build 2026-07-06T02:25:06,612 running build_py 2026-07-06T02:25:06,619 creating build/lib/oncoref 2026-07-06T02:25:06,621 copying oncoref/cta.py -> build/lib/oncoref 2026-07-06T02:25:06,624 copying oncoref/cohorts.py -> build/lib/oncoref 2026-07-06T02:25:06,626 copying oncoref/expression.py -> build/lib/oncoref 2026-07-06T02:25:06,630 copying oncoref/response_signatures.py -> build/lib/oncoref 2026-07-06T02:25:06,632 copying oncoref/data_bundle.py -> build/lib/oncoref 2026-07-06T02:25:06,634 copying oncoref/tmb.py -> build/lib/oncoref 2026-07-06T02:25:06,637 copying oncoref/cta_tissues.py -> build/lib/oncoref 2026-07-06T02:25:06,639 copying oncoref/gene_ids.py -> build/lib/oncoref 2026-07-06T02:25:06,641 copying oncoref/source_matrices.py -> build/lib/oncoref 2026-07-06T02:25:06,643 copying oncoref/gene_qc.py -> build/lib/oncoref 2026-07-06T02:25:06,646 copying oncoref/cli.py -> build/lib/oncoref 2026-07-06T02:25:06,648 copying oncoref/peptides.py -> build/lib/oncoref 2026-07-06T02:25:06,650 copying oncoref/expression_builders.py -> build/lib/oncoref 2026-07-06T02:25:06,653 copying oncoref/proteoforms.py -> build/lib/oncoref 2026-07-06T02:25:06,655 copying oncoref/samples.py -> build/lib/oncoref 2026-07-06T02:25:06,657 copying oncoref/cancer_genes.py -> build/lib/oncoref 2026-07-06T02:25:06,659 copying oncoref/expression_engine.py -> build/lib/oncoref 2026-07-06T02:25:06,662 copying oncoref/ici_response.py -> build/lib/oncoref 2026-07-06T02:25:06,664 copying oncoref/reference_data.py -> build/lib/oncoref 2026-07-06T02:25:06,666 copying oncoref/normalization.py -> build/lib/oncoref 2026-07-06T02:25:06,669 copying oncoref/apd1.py -> build/lib/oncoref 2026-07-06T02:25:06,671 copying oncoref/catalog.py -> build/lib/oncoref 2026-07-06T02:25:06,673 copying oncoref/antigen_coverage.py -> build/lib/oncoref 2026-07-06T02:25:06,675 copying oncoref/plots.py -> build/lib/oncoref 2026-07-06T02:25:06,678 copying oncoref/data_manifest.py -> build/lib/oncoref 2026-07-06T02:25:06,681 copying oncoref/hpa.py -> build/lib/oncoref 2026-07-06T02:25:06,683 copying oncoref/genome.py -> build/lib/oncoref 2026-07-06T02:25:06,685 copying oncoref/incidence.py -> build/lib/oncoref 2026-07-06T02:25:06,687 copying oncoref/cancer_types.py -> build/lib/oncoref 2026-07-06T02:25:06,691 copying oncoref/cta_curation_plots.py -> build/lib/oncoref 2026-07-06T02:25:06,693 copying oncoref/load_dataset.py -> build/lib/oncoref 2026-07-06T02:25:06,695 copying oncoref/cta_regen.py -> build/lib/oncoref 2026-07-06T02:25:06,698 copying oncoref/__init__.py -> build/lib/oncoref 2026-07-06T02:25:06,700 copying oncoref/cta_coverage.py -> build/lib/oncoref 2026-07-06T02:25:06,702 copying oncoref/fusions.py -> build/lib/oncoref 2026-07-06T02:25:06,704 copying oncoref/coverage.py -> build/lib/oncoref 2026-07-06T02:25:06,706 copying oncoref/version.py -> build/lib/oncoref 2026-07-06T02:25:06,708 copying oncoref/cancer_ontology.py -> build/lib/oncoref 2026-07-06T02:25:06,710 copying oncoref/ici.py -> build/lib/oncoref 2026-07-06T02:25:06,714 copying oncoref/cta_peptides.py -> build/lib/oncoref 2026-07-06T02:25:06,717 copying oncoref/expression_registry.py -> build/lib/oncoref 2026-07-06T02:25:06,720 copying oncoref/gene_families.py -> build/lib/oncoref 2026-07-06T02:25:06,735 creating build/lib/oncoref/data 2026-07-06T02:25:06,736 copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,740 copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,742 copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,745 copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,747 copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,752 copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,755 copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,762 copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,772 copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,781 copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,785 copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,787 copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,791 copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,975 copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,977 copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,979 copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,982 copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,984 copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,986 copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,989 copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,991 copying oncoref/data/expression-artifact-gene-universe-deltas.csv -> build/lib/oncoref/data 2026-07-06T02:25:06,998 copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,001 copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,003 copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,005 copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,008 copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,013 copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,015 copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,018 copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,020 copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,022 copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,027 copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,030 copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,033 copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,035 copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,037 copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,039 copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,042 copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,044 copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,047 copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,049 copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,051 copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,054 copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,056 copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,058 copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,066 copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,068 copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,070 copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,072 copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,074 copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,076 copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,081 copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,084 copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,086 copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data 2026-07-06T02:25:07,088 copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data 2026-07-06T02:25:07,098 copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data 2026-07-06T02:25:07,109 copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data 2026-07-06T02:25:07,116 copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data 2026-07-06T02:25:07,129 installing to build/bdist.linux-armv7l/wheel 2026-07-06T02:25:07,130 running install 2026-07-06T02:25:07,153 running install_lib 2026-07-06T02:25:07,158 creating build/bdist.linux-armv7l/wheel 2026-07-06T02:25:07,160 creating build/bdist.linux-armv7l/wheel/oncoref 2026-07-06T02:25:07,161 copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,164 copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,165 copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,170 copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,172 copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,174 copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,176 copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,178 copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,180 copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,183 copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,185 copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,187 copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,189 copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,192 copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,194 copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,196 copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,198 copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,201 copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,203 copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,205 copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,208 copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,210 copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,212 copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,214 copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,217 copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,219 copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,222 copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,224 copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,226 copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,229 copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,232 creating build/bdist.linux-armv7l/wheel/oncoref/data 2026-07-06T02:25:07,233 copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,236 copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,237 copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,240 copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,242 copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,244 copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,247 copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,249 copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,251 copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,257 copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,261 copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,263 copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,265 copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,267 copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,269 copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,278 copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,280 copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,282 copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,284 copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,286 copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,294 copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,296 copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,298 copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,300 copying build/lib/oncoref/data/expression-artifact-gene-universe-deltas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,306 copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,309 copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,312 copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,313 copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,316 copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,323 copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,326 copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,329 copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,332 copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,334 copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,340 copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,343 copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,351 copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,355 copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,358 copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,360 copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,363 copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,368 copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,371 copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,375 copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,378 copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,380 copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,383 copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,386 copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,389 copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,406 copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,408 copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,411 copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,414 copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,416 copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,419 copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,425 copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,427 copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,429 copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data 2026-07-06T02:25:07,431 copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,433 copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,436 copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,438 copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,440 copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,442 copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,445 copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,447 copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,448 copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,451 copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,453 copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,455 copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref 2026-07-06T02:25:07,458 running install_egg_info 2026-07-06T02:25:07,467 running egg_info 2026-07-06T02:25:07,472 writing oncoref.egg-info/PKG-INFO 2026-07-06T02:25:07,477 writing dependency_links to oncoref.egg-info/dependency_links.txt 2026-07-06T02:25:07,478 writing entry points to oncoref.egg-info/entry_points.txt 2026-07-06T02:25:07,480 writing requirements to oncoref.egg-info/requires.txt 2026-07-06T02:25:07,481 writing top-level names to oncoref.egg-info/top_level.txt 2026-07-06T02:25:07,499 reading manifest file 'oncoref.egg-info/SOURCES.txt' 2026-07-06T02:25:07,508 reading manifest template 'MANIFEST.in' 2026-07-06T02:25:07,510 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression' 2026-07-06T02:25:07,512 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles' 2026-07-06T02:25:07,513 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives' 2026-07-06T02:25:07,514 warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5' 2026-07-06T02:25:07,516 warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv' 2026-07-06T02:25:07,517 warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv' 2026-07-06T02:25:07,517 adding license file 'LICENSE' 2026-07-06T02:25:07,525 writing manifest file 'oncoref.egg-info/SOURCES.txt' 2026-07-06T02:25:07,527 Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.47-py3.11.egg-info 2026-07-06T02:25:07,541 running install_scripts 2026-07-06T02:25:07,552 creating build/bdist.linux-armv7l/wheel/oncoref-1.8.47.dist-info/WHEEL 2026-07-06T02:25:07,555 creating '/tmp/pip-wheel-kwi6u6pl/.tmp-5y0ecvjt/oncoref-1.8.47-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-07-06T02:25:07,559 adding 'oncoref/__init__.py' 2026-07-06T02:25:07,560 adding 'oncoref/antigen_coverage.py' 2026-07-06T02:25:07,562 adding 'oncoref/apd1.py' 2026-07-06T02:25:07,564 adding 'oncoref/cancer_genes.py' 2026-07-06T02:25:07,565 adding 'oncoref/cancer_ontology.py' 2026-07-06T02:25:07,573 adding 'oncoref/cancer_types.py' 2026-07-06T02:25:07,575 adding 'oncoref/catalog.py' 2026-07-06T02:25:07,578 adding 'oncoref/cli.py' 2026-07-06T02:25:07,580 adding 'oncoref/cohorts.py' 2026-07-06T02:25:07,583 adding 'oncoref/coverage.py' 2026-07-06T02:25:07,586 adding 'oncoref/cta.py' 2026-07-06T02:25:07,587 adding 'oncoref/cta_coverage.py' 2026-07-06T02:25:07,589 adding 'oncoref/cta_curation_plots.py' 2026-07-06T02:25:07,591 adding 'oncoref/cta_peptides.py' 2026-07-06T02:25:07,594 adding 'oncoref/cta_regen.py' 2026-07-06T02:25:07,595 adding 'oncoref/cta_tissues.py' 2026-07-06T02:25:07,599 adding 'oncoref/data_bundle.py' 2026-07-06T02:25:07,602 adding 'oncoref/data_manifest.py' 2026-07-06T02:25:07,616 adding 'oncoref/expression.py' 2026-07-06T02:25:07,619 adding 'oncoref/expression_builders.py' 2026-07-06T02:25:07,623 adding 'oncoref/expression_engine.py' 2026-07-06T02:25:07,624 adding 'oncoref/expression_registry.py' 2026-07-06T02:25:07,626 adding 'oncoref/fusions.py' 2026-07-06T02:25:07,629 adding 'oncoref/gene_families.py' 2026-07-06T02:25:07,631 adding 'oncoref/gene_ids.py' 2026-07-06T02:25:07,633 adding 'oncoref/gene_qc.py' 2026-07-06T02:25:07,635 adding 'oncoref/genome.py' 2026-07-06T02:25:07,636 adding 'oncoref/hpa.py' 2026-07-06T02:25:07,641 adding 'oncoref/ici.py' 2026-07-06T02:25:07,642 adding 'oncoref/ici_response.py' 2026-07-06T02:25:07,644 adding 'oncoref/incidence.py' 2026-07-06T02:25:07,646 adding 'oncoref/load_dataset.py' 2026-07-06T02:25:07,650 adding 'oncoref/normalization.py' 2026-07-06T02:25:07,652 adding 'oncoref/peptides.py' 2026-07-06T02:25:07,659 adding 'oncoref/plots.py' 2026-07-06T02:25:07,662 adding 'oncoref/proteoforms.py' 2026-07-06T02:25:07,664 adding 'oncoref/reference_data.py' 2026-07-06T02:25:07,665 adding 'oncoref/response_signatures.py' 2026-07-06T02:25:07,667 adding 'oncoref/samples.py' 2026-07-06T02:25:07,668 adding 'oncoref/source_matrices.py' 2026-07-06T02:25:07,670 adding 'oncoref/tmb.py' 2026-07-06T02:25:07,671 adding 'oncoref/version.py' 2026-07-06T02:25:07,675 adding 'oncoref/data/cancer-apd1-response.csv' 2026-07-06T02:25:07,676 adding 'oncoref/data/cancer-code-burden-map.csv' 2026-07-06T02:25:07,677 adding 'oncoref/data/cancer-cohort-aggregates.csv' 2026-07-06T02:25:07,682 adding 'oncoref/data/cancer-driver-genes.csv' 2026-07-06T02:25:07,684 adding 'oncoref/data/cancer-driver-variants.csv' 2026-07-06T02:25:07,687 adding 'oncoref/data/cancer-expression-source-candidates.csv' 2026-07-06T02:25:07,688 adding 'oncoref/data/cancer-frameshift-burden.csv' 2026-07-06T02:25:07,691 adding 'oncoref/data/cancer-fusions.csv' 2026-07-06T02:25:07,708 adding 'oncoref/data/cancer-ici-response-estimates.csv' 2026-07-06T02:25:07,712 adding 'oncoref/data/cancer-ici-response.csv' 2026-07-06T02:25:07,714 adding 'oncoref/data/cancer-incidence-mortality.csv' 2026-07-06T02:25:07,728 adding 'oncoref/data/cancer-key-genes.csv' 2026-07-06T02:25:07,730 adding 'oncoref/data/cancer-lineage-group-overrides.csv' 2026-07-06T02:25:07,731 adding 'oncoref/data/cancer-lineage-groups.csv' 2026-07-06T02:25:07,733 adding 'oncoref/data/cancer-normal-tissue-map.csv' 2026-07-06T02:25:07,762 adding 'oncoref/data/cancer-reference-expression-samples.csv.gz' 2026-07-06T02:25:07,765 adding 'oncoref/data/cancer-response-signatures.csv' 2026-07-06T02:25:07,766 adding 'oncoref/data/cancer-subtype-groupings.csv' 2026-07-06T02:25:07,778 adding 'oncoref/data/cancer-testis-antigens.csv' 2026-07-06T02:25:07,781 adding 'oncoref/data/cancer-tmb.csv' 2026-07-06T02:25:07,783 adding 'oncoref/data/cancer-type-genes.csv' 2026-07-06T02:25:07,787 adding 'oncoref/data/cancer-type-registry.csv' 2026-07-06T02:25:07,788 adding 'oncoref/data/cancer-viral-antigens.csv' 2026-07-06T02:25:07,841 adding 'oncoref/data/canonical-gene-space.csv.gz' 2026-07-06T02:25:07,846 adding 'oncoref/data/cdna-identical-gene-groups.csv' 2026-07-06T02:25:07,850 adding 'oncoref/data/censored-gene-reference-tpm.csv' 2026-07-06T02:25:07,851 adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv' 2026-07-06T02:25:07,862 adding 'oncoref/data/clean-tpm-censored-genes.csv' 2026-07-06T02:25:07,864 adding 'oncoref/data/cohort-registry.csv' 2026-07-06T02:25:07,865 adding 'oncoref/data/cta-candidate-references.csv' 2026-07-06T02:25:07,867 adding 'oncoref/data/cta-ihc-unreliable.csv' 2026-07-06T02:25:07,868 adding 'oncoref/data/degenerate-subtype-pairs.csv' 2026-07-06T02:25:07,869 adding 'oncoref/data/disease-state-rules.csv' 2026-07-06T02:25:07,896 adding 'oncoref/data/ensembl-id-aliases.csv' 2026-07-06T02:25:07,909 adding 'oncoref/data/expression-artifact-gene-universe-deltas.csv' 2026-07-06T02:25:07,914 adding 'oncoref/data/expression_sources.yaml' 2026-07-06T02:25:07,916 adding 'oncoref/data/extra-tx-mappings.csv' 2026-07-06T02:25:07,917 adding 'oncoref/data/family-burden-map.csv' 2026-07-06T02:25:07,918 adding 'oncoref/data/fusion-expression-effects.csv' 2026-07-06T02:25:07,920 adding 'oncoref/data/fusion-surrogate-expression.csv' 2026-07-06T02:25:07,921 adding 'oncoref/data/hemoglobin-genes.csv' 2026-07-06T02:25:07,923 adding 'oncoref/data/histone-genes.csv' 2026-07-06T02:25:07,924 adding 'oncoref/data/housekeeping-genes.csv' 2026-07-06T02:25:07,925 adding 'oncoref/data/mitochondrial-genes.csv' 2026-07-06T02:25:07,926 adding 'oncoref/data/narrative-gene-sets.csv' 2026-07-06T02:25:07,967 adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz' 2026-07-06T02:25:07,970 adding 'oncoref/data/nuclear-retained-lncrnas.csv' 2026-07-06T02:25:07,972 adding 'oncoref/data/numt-pseudogenes.csv' 2026-07-06T02:25:07,973 adding 'oncoref/data/proteoform-collapse-overrides.csv' 2026-07-06T02:25:07,976 adding 'oncoref/data/proteoform-groups-genome.csv' 2026-07-06T02:25:07,977 adding 'oncoref/data/proteoform-groups.csv' 2026-07-06T02:25:07,979 adding 'oncoref/data/rare-cancer-fusion-rules.csv' 2026-07-06T02:25:07,980 adding 'oncoref/data/ribosomal-protein-genes.csv' 2026-07-06T02:25:07,986 adding 'oncoref/data/ribosomal-protein-pseudogenes.csv' 2026-07-06T02:25:07,988 adding 'oncoref/data/rrna-and-pseudogenes.csv' 2026-07-06T02:25:08,007 adding 'oncoref/data/small-noncoding-rnas.csv' 2026-07-06T02:25:08,009 adding 'oncoref/data/source-matrices.csv' 2026-07-06T02:25:08,011 adding 'oncoref/data/tissue-burden-map.csv' 2026-07-06T02:25:08,014 adding 'oncoref-1.8.47.dist-info/licenses/LICENSE' 2026-07-06T02:25:08,016 adding 'oncoref-1.8.47.dist-info/METADATA' 2026-07-06T02:25:08,017 adding 'oncoref-1.8.47.dist-info/WHEEL' 2026-07-06T02:25:08,018 adding 'oncoref-1.8.47.dist-info/entry_points.txt' 2026-07-06T02:25:08,019 adding 'oncoref-1.8.47.dist-info/top_level.txt' 2026-07-06T02:25:08,021 adding 'oncoref-1.8.47.dist-info/RECORD' 2026-07-06T02:25:08,041 removing build/bdist.linux-armv7l/wheel 2026-07-06T02:25:08,160 Building wheel for oncoref (pyproject.toml): finished with status 'done' 2026-07-06T02:25:08,196 Created wheel for oncoref: filename=oncoref-1.8.47-py3-none-any.whl size=1700295 sha256=96710ebdfb36047b69bc50cb6e9b5e777499c7bab72fb80db8caf7ca785c3070 2026-07-06T02:25:08,198 Stored in directory: /tmp/pip-ephem-wheel-cache-ly3vm6j1/wheels/c4/9f/5d/d5919b16151ab6bda40f90fb1e1b8e0e3782fd8e179fb27243 2026-07-06T02:25:08,213 Successfully built oncoref 2026-07-06T02:25:08,257 Removed build tracker: '/tmp/pip-build-tracker-79rs5eih'