2026-07-06T04:22:53,194 Created temporary directory: /tmp/pip-ephem-wheel-cache-tunk7cfq 2026-07-06T04:22:53,196 Created temporary directory: /tmp/pip-build-tracker-4cmwyy1v 2026-07-06T04:22:53,197 Initialized build tracking at /tmp/pip-build-tracker-4cmwyy1v 2026-07-06T04:22:53,197 Created build tracker: /tmp/pip-build-tracker-4cmwyy1v 2026-07-06T04:22:53,198 Entered build tracker: /tmp/pip-build-tracker-4cmwyy1v 2026-07-06T04:22:53,199 Created temporary directory: /tmp/pip-wheel-gyraq2a4 2026-07-06T04:22:53,202 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-06T04:22:53,204 Created temporary directory: /tmp/pip-ephem-wheel-cache-mboc_zfn 2026-07-06T04:22:53,226 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-06T04:22:53,229 2 location(s) to search for versions of cnvkit: 2026-07-06T04:22:53,229 * https://pypi.org/simple/cnvkit/ 2026-07-06T04:22:53,229 * https://www.piwheels.org/simple/cnvkit/ 2026-07-06T04:22:53,230 Fetching project page and analyzing links: https://pypi.org/simple/cnvkit/ 2026-07-06T04:22:53,231 Getting page https://pypi.org/simple/cnvkit/ 2026-07-06T04:22:53,233 Found index url https://pypi.org/simple 2026-07-06T04:22:53,464 Fetched page https://pypi.org/simple/cnvkit/ as application/vnd.pypi.simple.v1+json 2026-07-06T04:22:53,475 Found link https://files.pythonhosted.org/packages/32/77/621ff6d47c503ccded6fa853e0cd472afed8e7977b0b34ed39172d5bc345/CNVkit-0.2.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.2 2026-07-06T04:22:53,476 Found link https://files.pythonhosted.org/packages/71/ff/dbcf0245a0bf19f6ba8d2eaa116e49b5722cb5baec0d67d1102efc464c7d/CNVkit-0.2.1.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.2.1 2026-07-06T04:22:53,476 Found link https://files.pythonhosted.org/packages/0a/b6/4b3691109140a2c4b1e5088ea5c5647757c69b61668ecbbac99c1afe4c79/CNVkit-0.2.2.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.2.2 2026-07-06T04:22:53,477 Found link https://files.pythonhosted.org/packages/17/e2/6620f157dc63466bf87b9a572f3601393388f198a6d4890184dfae8d4dba/CNVkit-0.2.3.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.2.3 2026-07-06T04:22:53,478 Found link https://files.pythonhosted.org/packages/5c/8b/13bb9d9c7aded4fc72ef8826e6a753bf63803abcc780d7ddf472f4e5bfe7/CNVkit-0.2.4.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.2.4 2026-07-06T04:22:53,478 Found link https://files.pythonhosted.org/packages/c0/08/9f5d1761025faebf8e22ed100862b15340a5148990d5f2ee2ef91c0995ac/CNVkit-0.2.5.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.2.5 2026-07-06T04:22:53,479 Found link https://files.pythonhosted.org/packages/f4/5c/5189ced8d6e13dfbdb4c06f727296ead4775f1b146d283d4118b3b5952af/CNVkit-0.3.0.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.3.0 2026-07-06T04:22:53,480 Found link https://files.pythonhosted.org/packages/c8/c1/729f012a6eff3ec15ab6bc7fa750b21c7007c7339ff4774eebe26779a268/CNVkit-0.3.1.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.3.1 2026-07-06T04:22:53,480 Found link https://files.pythonhosted.org/packages/f4/b1/177b9324042bf94b29ee3bf890eb9337c33210615ac793d950bd61622e5e/CNVkit-0.3.2.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.3.2 2026-07-06T04:22:53,481 Found link https://files.pythonhosted.org/packages/e1/53/4ae40544a7f4144a47a657ff63d002a18a7c12eb0d1838657ee84883f0af/CNVkit-0.3.3.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.3.3 2026-07-06T04:22:53,482 Found link https://files.pythonhosted.org/packages/97/78/4ac941c956e24d81c29b41d96a1ec74f2810e5047079432f6a1ab77504af/CNVkit-0.3.4.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.3.4 2026-07-06T04:22:53,482 Found link https://files.pythonhosted.org/packages/b0/21/3cce6c5788ede1207866fce30a54222bd45803f97100bc042c65ec7f7006/CNVkit-0.3.5.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.3.5 2026-07-06T04:22:53,483 Found link https://files.pythonhosted.org/packages/34/b5/245ffadbbe12eded33141f0d5679e0ace537b4ea994cfb3b9be4e3c96b14/CNVkit-0.4.0.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.4.0 2026-07-06T04:22:53,484 Found link https://files.pythonhosted.org/packages/b1/51/9033a886b88b9bccffacadc50e5745cc5b345bcf5eac43973b29cb73b669/CNVkit-0.4.1.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.4.1 2026-07-06T04:22:53,485 Found link https://files.pythonhosted.org/packages/e9/2f/88b099e9c539e0da2197229f0b3c6847bffce3595c65d55c68db73e3b357/CNVkit-0.5.0.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.5.0 2026-07-06T04:22:53,485 Found link https://files.pythonhosted.org/packages/de/2d/7a0e31c57af9ca71e9e06ed0b7389ce928592ed68711b3ea4fbbcc6148b0/CNVkit-0.5.1.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.5.1 2026-07-06T04:22:53,486 Found link https://files.pythonhosted.org/packages/ba/d4/53e991f7ed5484327ac2960796dde2b0df0481655943e6258d7df300d108/CNVkit-0.5.2.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.5.2 2026-07-06T04:22:53,486 Found link https://files.pythonhosted.org/packages/30/c0/73a2d9150e51f612454978a457b92d959dd595e369838152ee25691883c7/CNVkit-0.6.0.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.6.0 2026-07-06T04:22:53,487 Found link https://files.pythonhosted.org/packages/57/d5/d79279b28721dedb1454904927226fca956c97a240713116d8d13f73b5e1/CNVkit-0.6.1.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.6.1 2026-07-06T04:22:53,488 Found link https://files.pythonhosted.org/packages/82/4e/86ed817c29e3eed784ccdb312f75487527c60db801bf074a62308425bf3b/CNVkit-0.7.0.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.0 2026-07-06T04:22:53,488 Found link https://files.pythonhosted.org/packages/8e/c3/f04accf7a1eb4d07a3b043bd5e55f9fe19c71f9755becec69f805dc5d41e/CNVkit-0.7.1.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.1 2026-07-06T04:22:53,489 Found link https://files.pythonhosted.org/packages/bc/7b/65347ea640a9cbc48031a6b78754de6ee89963c7bffb4e55596c606649b7/CNVkit-0.7.2.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.2 2026-07-06T04:22:53,489 Found link https://files.pythonhosted.org/packages/f6/3a/e0992c81352eff90eff0fc169dceeba905d58ddd2894de9c1dfa4da8a58d/CNVkit-0.7.3.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.3 2026-07-06T04:22:53,490 Found link https://files.pythonhosted.org/packages/ba/60/bb99adaee7c90d6437e095f564d842ab82515bc71018ae048a2d02023e89/CNVkit-0.7.4.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.4 2026-07-06T04:22:53,491 Found link https://files.pythonhosted.org/packages/6c/d4/72a550e603acbb6160dcb9f9ce740e123328ddd5764f04b20c6e59dc27c7/CNVkit-0.7.5.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.5 2026-07-06T04:22:53,492 Found link https://files.pythonhosted.org/packages/6b/f0/98971dfde24cc0ebeab120a907a9ad48a4d5e8d8779904dc51d3a6e5e5c0/CNVkit-0.7.6.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.6 2026-07-06T04:22:53,492 Found link https://files.pythonhosted.org/packages/52/6a/118af6fdc7183ddd1359937bd58211faa1e1977b1721bbca1b68aa70a0a6/CNVkit-0.7.7.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.7 2026-07-06T04:22:53,493 Found link https://files.pythonhosted.org/packages/b1/ed/72ba9f4e1c5d615af3c23bf44ef01797b72b3d3cfbadf5b08658888ded42/CNVkit-0.7.8.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.8 2026-07-06T04:22:53,494 Found link https://files.pythonhosted.org/packages/1c/af/83fb0dc51302827a407a898172220ebcfe6467c94f5f0585d64f4d25edaa/CNVkit-0.7.9.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.9 2026-07-06T04:22:53,494 Found link https://files.pythonhosted.org/packages/6f/96/af23dbe329fce0f0b1124d997d2f895c7cf05119e854aecc764b452ee236/CNVkit-0.7.10.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.10 2026-07-06T04:22:53,495 Found link https://files.pythonhosted.org/packages/65/bd/78d0702de271f06c492a9b502980154394c91028ce9afcf31df4081e0d63/CNVkit-0.7.11.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.7.11 2026-07-06T04:22:53,496 Found link https://files.pythonhosted.org/packages/b6/13/c084767ea617bf413a78d97b885949661f51d968def9d1b050c2880883bf/CNVkit-0.8.0.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.8.0 2026-07-06T04:22:53,496 Found link https://files.pythonhosted.org/packages/c7/f4/4b6880cac43e5aae09542a5316cd77a359a778e3a6964b5a5a8c325397db/CNVkit-0.8.1.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.8.1 2026-07-06T04:22:53,497 Found link https://files.pythonhosted.org/packages/f3/58/34ac43541c0fc3d1817b3109c54e865001176c340cab8beb30a8aa220096/CNVkit-0.8.2.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.8.2 2026-07-06T04:22:53,497 Found link https://files.pythonhosted.org/packages/49/05/23ed310f7478a8f75d5f5e7beea701c5ea38e2925444a6c08d6ade587ac8/CNVkit-0.8.3.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.8.3 2026-07-06T04:22:53,498 Found link https://files.pythonhosted.org/packages/c0/91/87fe6e9784ac858261098649d428191aecc3f1f1b2acd52d6b6228a57cd0/CNVkit-0.8.4.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.8.4 2026-07-06T04:22:53,498 Found link https://files.pythonhosted.org/packages/bb/05/336b14341a942aeb40e4692f75e05d8cc35dc6ef5c8524df6c91a56b1eba/CNVkit-0.8.5.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.8.5 2026-07-06T04:22:53,499 Found link https://files.pythonhosted.org/packages/24/4f/ad111db335d76134fe1bdf4834da59a97c069d906aac54344ecdf6c7f5b5/CNVkit-0.9.0.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.9.0 2026-07-06T04:22:53,500 Found link https://files.pythonhosted.org/packages/5b/09/0c07291435665f9336dcda9b9ee6578da925b73a26b7583f3996f5feeca7/CNVkit-0.9.1.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.9.1 2026-07-06T04:22:53,500 Found link https://files.pythonhosted.org/packages/b2/29/dc460b114eec6361554dc4709628fe309fe726a2eee6027e061cb096acaa/CNVkit-0.9.3.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.9.3 2026-07-06T04:22:53,501 Found link https://files.pythonhosted.org/packages/cd/33/9c97e984e2e29ae6a7867ce1f5ffe719bfa15ba71040e5f7ba92ecaab2e9/CNVkit-0.9.4.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.9.4 2026-07-06T04:22:53,501 Found link https://files.pythonhosted.org/packages/74/7b/e540e5c5da56c17b67ecd7652af455e9b90f255c7660be8b3507036707ae/CNVkit-0.9.5.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.9.5 2026-07-06T04:22:53,502 Found link https://files.pythonhosted.org/packages/e1/26/a3f7541c9b75e9d1237964e657c60cb628909b3fb10bd33c2fce23d44e87/CNVkit-0.9.6.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.9.6 2026-07-06T04:22:53,503 Found link https://files.pythonhosted.org/packages/2a/7b/167074cd4485557d605d7e659cd5130b8bdb225ee8de8d30bb6b19fc39d4/CNVkit-0.9.7b0.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.9.7b0 2026-07-06T04:22:53,503 Found link https://files.pythonhosted.org/packages/07/7b/1c8e0d98c06f6c8764885298e22e1782632d1338e46a4b48fc0f1e5ed00c/CNVkit-0.9.7b1.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.9.7b1 2026-07-06T04:22:53,504 Found link https://files.pythonhosted.org/packages/67/f2/8989d8ed3163f78b3c8d524f97c9ce3b2d670f76ed17a8473347584d5d65/CNVkit-0.9.7.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.9.7 2026-07-06T04:22:53,505 Found link https://files.pythonhosted.org/packages/3e/86/13f74ee3d3daccc6dc29420a5ed55dec1263991998ebd43e20c3e3b2a397/CNVkit-0.9.8.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.9.8 2026-07-06T04:22:53,505 Found link https://files.pythonhosted.org/packages/93/d9/ee1f7b814a8a019225f97dfcc3352a3667f60b653cf9671dd7618807bfbe/CNVkit-0.9.9.tar.gz (from https://pypi.org/simple/cnvkit/), version: 0.9.9 2026-07-06T04:22:53,506 Skipping link: No binaries permitted for cnvkit: https://files.pythonhosted.org/packages/2d/d2/fec46cb2e61ec2dcf270c1ecbe2fb9ff9e21d2c94018a827795f28a022dc/CNVkit-0.9.10-py3-none-any.whl (from https://pypi.org/simple/cnvkit/) (requires-python:>=3.7) 2026-07-06T04:22:53,507 Found link https://files.pythonhosted.org/packages/97/bf/89948ad0018712eac88313daa1350f867154926823d7ae1952e61afad83c/CNVkit-0.9.10.tar.gz (from https://pypi.org/simple/cnvkit/) (requires-python:>=3.7), version: 0.9.10 2026-07-06T04:22:53,508 Found link https://files.pythonhosted.org/packages/c1/79/243feccad125533aad01685a2cc63a03ee19fdfb49128dffa3e8b91256f2/CNVkit-0.9.11.tar.gz (from https://pypi.org/simple/cnvkit/) (requires-python:>=3.8), version: 0.9.11 2026-07-06T04:22:53,509 Skipping link: No binaries permitted for cnvkit: https://files.pythonhosted.org/packages/35/8d/66cb8a5109553863f80ba8b26e801c2c3eadacbabe273b6b60ee9b3b3f53/cnvkit-0.9.12-py3-none-any.whl (from https://pypi.org/simple/cnvkit/) (requires-python:>=3.8) 2026-07-06T04:22:53,509 Found link https://files.pythonhosted.org/packages/c8/1b/5e648bcfd7c7bc12d4f2ffc4c34760444c854e0110d8ba21c08040367afd/cnvkit-0.9.12.tar.gz (from https://pypi.org/simple/cnvkit/) (requires-python:>=3.8), version: 0.9.12 2026-07-06T04:22:53,510 Skipping link: No binaries permitted for cnvkit: https://files.pythonhosted.org/packages/52/a4/be3906cf1afe1d210ff6b1b9dfb1c51259c431d942a82469a65828d17999/cnvkit-0.9.13-py3-none-any.whl (from https://pypi.org/simple/cnvkit/) (requires-python:>=3.10) 2026-07-06T04:22:53,511 Found link https://files.pythonhosted.org/packages/f5/db/51df6962713f81d622615536aa15e64ca155b16e273e517a8e0abdec5312/cnvkit-0.9.13.tar.gz (from https://pypi.org/simple/cnvkit/) (requires-python:>=3.10), version: 0.9.13 2026-07-06T04:22:53,511 Skipping link: No binaries permitted for cnvkit: https://files.pythonhosted.org/packages/87/c2/847dc7d79dd087d78577e0f9424fb5911641693c23cbf9b414e2be075f60/cnvkit-0.9.14-py3-none-any.whl (from https://pypi.org/simple/cnvkit/) (requires-python:>=3.11) 2026-07-06T04:22:53,512 Found link https://files.pythonhosted.org/packages/af/98/454bbb39ecbba8f77e8237b33545e74d19413fd9864074d1b868f1a2cf2e/cnvkit-0.9.14.tar.gz (from https://pypi.org/simple/cnvkit/) (requires-python:>=3.11), version: 0.9.14 2026-07-06T04:22:53,513 Fetching project page and analyzing links: https://www.piwheels.org/simple/cnvkit/ 2026-07-06T04:22:53,514 Getting page https://www.piwheels.org/simple/cnvkit/ 2026-07-06T04:22:53,515 Found index url https://www.piwheels.org/simple 2026-07-06T04:22:53,710 Fetched page https://www.piwheels.org/simple/cnvkit/ as text/html 2026-07-06T04:22:53,724 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/cnvkit-0.9.13-py3-none-any.whl#sha256=0e6cda37c38e891410dff676ec8495ef6ace25a667fe35669ab41cdad8cbfd5c (from https://www.piwheels.org/simple/cnvkit/) (requires-python:>=3.10) 2026-07-06T04:22:53,725 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/cnvkit-0.9.12-py3-none-any.whl#sha256=44b26e5175f6f35b64bb430c4452cb8c67e195d7bcac2f05588d2f2eb48a57c9 (from https://www.piwheels.org/simple/cnvkit/) (requires-python:>=3.8) 2026-07-06T04:22:53,726 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.11-py3-none-any.whl#sha256=dc3d9bf1ade06ebdd1a4ce781189fbca5d1de9da4037245e48d65da0ef7fe7b3 (from https://www.piwheels.org/simple/cnvkit/) (requires-python:>=3.8) 2026-07-06T04:22:53,726 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.10-py3-none-any.whl#sha256=b20703576fe87d43c4699836be892d7890d856f556c78d724a5682b9de08e7a9 (from https://www.piwheels.org/simple/cnvkit/) (requires-python:>=3.7) 2026-07-06T04:22:53,727 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.9-py2.py3-none-any.whl#sha256=264472f08e6f9272c5b57cb9b0065fcb9eb858f60f7dbd9ec374c5ef1a28b686 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,728 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.8-py2.py3-none-any.whl#sha256=c6865d243855e72177e842af4fb22ae7d5900d735da3559727e5652fb8c75ab9 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,728 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.7-py2.py3-none-any.whl#sha256=b34d48ebcf86962b13478ee6a59de6788d21c0243e6ee5cb3198ef1c3d430c97 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,729 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.7b1-py2.py3-none-any.whl#sha256=bcfe78e7ead0eb6a0c9f0e7a86dde76c850c83a0afce38117972eed69944475e (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,730 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.7b0-py2.py3-none-any.whl#sha256=c3effee673679b0c5f78dbf8f3c4166d5d9cbe276e2db5f25ac59d2c2dd15f40 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,730 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.6-py2.py3-none-any.whl#sha256=79333b6dbcedfb9fa973c71242271828202c13ecc8dd10faaf7ffa24c16fbdb2 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,731 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.5-py2.py3-none-any.whl#sha256=d74c5ed33e528ebb14e9ab10b78f4a00b14f17b41df4b3df947e6c2ce001022f (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,731 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.4-py2.py3-none-any.whl#sha256=678a732ee73b23b84f7989755454d2de841baa635c8f18775ad768c4477650df (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,732 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.3-py2.py3-none-any.whl#sha256=90b6db8deb4b2a3808bb83dcec68fdfc41e942d1457b0008365e2c042c6f4662 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,732 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.1-py2.py3-none-any.whl#sha256=981fababe13457d77b0ad488cebbe929c5879c134f1d877084dbe205cc16691e (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,733 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.9.0-py2.py3-none-any.whl#sha256=73100c4682c12492a6bb687c5051635cb85bf2f67ba38d72b6444b738d243cc0 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,733 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.8.5-py2.py3-none-any.whl#sha256=87d08c53cd5e8df931518d91fd0e6d7a6e5e46e4d318b21a29abf4e615a70162 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,734 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.8.4-py2.py3-none-any.whl#sha256=78dba1a9db3ce4db6069115f8212ff9be19494cc43ba781114fd5c577a2dded3 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,734 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.8.3-py2.py3-none-any.whl#sha256=0c05a0e255a87c0b177f279720bda1173a7d3711a75d7a2f20b03ce1e64495f0 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,735 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.8.2-py2.py3-none-any.whl#sha256=132231e24166d69e57702af04354e2f2e009256ca448fc7c79f0b8b113b94b2f (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,735 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.8.1-py2.py3-none-any.whl#sha256=8070da572d7aff442c79ae73514caac43207cbfa47baa38ffc7ad00fdd0bf8ac (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,736 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.8.0-py2.py3-none-any.whl#sha256=b8b03099df20c7892f154aa8c3720f42c9e2e5b146ed06e14f4de6a7987fc3f1 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,737 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.11-py3-none-any.whl#sha256=afc5f54b659a32baa760ca38c7ebfc2f2f96d6c44f9ffda310f2087ff72c889c (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,737 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.10-py3-none-any.whl#sha256=b569cb822a33325e92189f14c49011564fb3fe6d290aa68b059b2893610a1347 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,738 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.9-py3-none-any.whl#sha256=b45b475df218f6abd77d61c18473050ab5d587c6b7a9a312209f0631f696b521 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,738 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.8-py3-none-any.whl#sha256=300166310ecc5f32a7e793c5e6d5c55165bb95ed1680cb68c2981370df96bf05 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,739 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.7-py3-none-any.whl#sha256=7cb040e98b6e0fd149508876355809424f264b47b36d3497a2c881646fd5fbce (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,739 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.6-py3-none-any.whl#sha256=afdb29280c66e0a2082fdc3e5e3a5c115e914ca2bb501f142d50c5563113a0fd (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,740 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.5-py3-none-any.whl#sha256=7557041dbb4cf7c1dfd02555bbade8376179e7edfce6adf1c9860899b2504666 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,740 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.4-py3-none-any.whl#sha256=9907f3a0c0f8928f65f30bad9dc7d4e2a9064fe412baadc367a89317722d7291 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,741 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.3-py3-none-any.whl#sha256=68def2584e431fbdd994d3a36c15d0ba9cf8ce6a7dda9107cdf62db3800f7321 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,741 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.2-py3-none-any.whl#sha256=e130a3c2ac795266ef18f369294f48ec9dec6c67f8e31d6706112c72f88eb931 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,742 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.1-py3-none-any.whl#sha256=fcc630d88b4727b1556ababbca3db9238186f756067b063132f1881a9a2930cd (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,742 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.7.0-py3-none-any.whl#sha256=9ddbe7ae9703f8c52d6d50c5e932ff2e85064fe4c3389f180ea6f0f18666cdb2 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,743 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.6.1-py3-none-any.whl#sha256=0c37a57fccfa90d5a553a8f337cd1e9c3c3b811d0dfa8372c4c1233b6bde645f (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,743 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.6.0-py3-none-any.whl#sha256=de186e4937774074ad297fe1349c25ba1452c106c3e322cab10a444dadc1d9d1 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,744 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.5.2-py3-none-any.whl#sha256=67a5b24c51df2b91799cd5602db74abaf1653f24cfa4d25f36dd466c75d3f5fb (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,744 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.5.1-py3-none-any.whl#sha256=edb7d5c30e7d7081fdb34d7bdcec2c0d1a17a79e1718646da0ced221a0ba8546 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,745 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.5.0-py3-none-any.whl#sha256=394204e860c6ef4271f714134a56f62d0227aeee7b861598494b93125f536c13 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,746 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.4.1-py3-none-any.whl#sha256=158cfa60014d34d66aa8e541b62c9d5b17f3d08522d37b3cf7469dbd857a2891 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,746 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.4.0-py3-none-any.whl#sha256=05637eda9dc2afa2098dc5b22ca74aae194efb1eab452dcd9a08b2b6917da6e2 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,747 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.3.5-py3-none-any.whl#sha256=657c8b5824da517527d0ee5eb629c8a42df315133e69a2078602b98a825ab545 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,747 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.3.4-py3-none-any.whl#sha256=444e46ff2216d2f028c873353183ca2bbba2b9d9d2d8da76c952b7d80a615d2f (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,747 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.3.3-py3-none-any.whl#sha256=18b63718e83fb370489b413e8cd57171e34d12e20cd04eddcff3238fbf6bc386 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,748 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.3.2-py3-none-any.whl#sha256=403679a021be2b07d4a82c46669552c69b23cbfce0a5f396a073be8eca0b072e (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,748 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.3.1-py3-none-any.whl#sha256=8118c8acad029ceaf2a55a229bce89a041dd4b50bad8c64122f2bd0cfd95d0ee (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,749 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.3.0-py3-none-any.whl#sha256=50dbe5ac581ef1fad1cd007ffc854a1e0d66ea98f6c43b220b747d60191b2cd9 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,749 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.2.5-py3-none-any.whl#sha256=1fdf5ff989ef4dd882cd2ca7d8f81ed84dfb48b51b02ad8565b05f7fd829648f (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,750 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.2.4-py3-none-any.whl#sha256=b383bac611fdd42244b89017c81f1be6bb161b242ecd54ac40669cbd2f1331b2 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,750 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.2.3-py3-none-any.whl#sha256=5d75333c89a687260f560d9ded373599f079395d8a21200de5cea9a1f72e13c6 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,751 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.2.2-py3-none-any.whl#sha256=74eabaa583c1ccd89d676c1e680bb2c202d47994972cfbd92f3d578c63709630 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,751 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.2.1-py3-none-any.whl#sha256=d18e963b5aade491b0ba4fac4dc28b7ae7493be694c25bb5b540740c2d6163c2 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,752 Skipping link: No binaries permitted for cnvkit: https://archive1.piwheels.org/simple/cnvkit/CNVkit-0.2-py3-none-any.whl#sha256=117343f6aa97cdfe4a06babf9e546c788f0cf5ee40a326386c419b2cc4449210 (from https://www.piwheels.org/simple/cnvkit/) 2026-07-06T04:22:53,753 Skipping link: not a file: https://www.piwheels.org/simple/cnvkit/ 2026-07-06T04:22:53,753 Skipping link: not a file: https://pypi.org/simple/cnvkit/ 2026-07-06T04:22:53,778 Given no hashes to check 1 links for project 'cnvkit': discarding no candidates 2026-07-06T04:22:53,795 Collecting cnvkit==0.9.14 2026-07-06T04:22:53,798 Created temporary directory: /tmp/pip-unpack-3zex3rhr 2026-07-06T04:22:53,950 Downloading cnvkit-0.9.14.tar.gz (361 kB) 2026-07-06T04:22:54,324 Added cnvkit==0.9.14 from https://files.pythonhosted.org/packages/af/98/454bbb39ecbba8f77e8237b33545e74d19413fd9864074d1b868f1a2cf2e/cnvkit-0.9.14.tar.gz to build tracker '/tmp/pip-build-tracker-4cmwyy1v' 2026-07-06T04:22:54,330 Created temporary directory: /tmp/pip-build-env-_yelhgah 2026-07-06T04:22:54,335 Installing build dependencies: started 2026-07-06T04:22:54,336 Running command pip subprocess to install build dependencies 2026-07-06T04:22:55,478 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-07-06T04:22:55,930 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-06T04:22:55,952 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-06T04:22:57,732 Collecting setuptools 2026-07-06T04:22:57,751 Using cached setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-06T04:23:00,652 Installing collected packages: setuptools 2026-07-06T04:23:03,733 Successfully installed setuptools-83.0.0 2026-07-06T04:23:04,021 Installing build dependencies: finished with status 'done' 2026-07-06T04:23:04,027 Getting requirements to build wheel: started 2026-07-06T04:23:04,028 Running command Getting requirements to build wheel 2026-07-06T04:23:04,633 /tmp/pip-build-env-_yelhgah/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T04:23:04,633 !! 2026-07-06T04:23:04,634 ******************************************************************************** 2026-07-06T04:23:04,635 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T04:23:04,636 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T04:23:04,637 or your builds will no longer be supported. 2026-07-06T04:23:04,638 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T04:23:04,638 ******************************************************************************** 2026-07-06T04:23:04,639 !! 2026-07-06T04:23:04,640 corresp(dist, value, root_dir) 2026-07-06T04:23:04,725 running egg_info 2026-07-06T04:23:04,731 writing CNVkit.egg-info/PKG-INFO 2026-07-06T04:23:04,737 writing dependency_links to CNVkit.egg-info/dependency_links.txt 2026-07-06T04:23:04,739 writing entry points to CNVkit.egg-info/entry_points.txt 2026-07-06T04:23:04,742 writing requirements to CNVkit.egg-info/requires.txt 2026-07-06T04:23:04,743 writing top-level names to CNVkit.egg-info/top_level.txt 2026-07-06T04:23:04,774 reading manifest file 'CNVkit.egg-info/SOURCES.txt' 2026-07-06T04:23:04,782 adding license file 'LICENSE' 2026-07-06T04:23:04,788 writing manifest file 'CNVkit.egg-info/SOURCES.txt' 2026-07-06T04:23:04,885 Getting requirements to build wheel: finished with status 'done' 2026-07-06T04:23:04,889 Created temporary directory: /tmp/pip-modern-metadata-f_ln9q5j 2026-07-06T04:23:04,891 Preparing metadata (pyproject.toml): started 2026-07-06T04:23:04,892 Running command Preparing metadata (pyproject.toml) 2026-07-06T04:23:05,454 /tmp/pip-build-env-_yelhgah/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T04:23:05,454 !! 2026-07-06T04:23:05,455 ******************************************************************************** 2026-07-06T04:23:05,455 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T04:23:05,456 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T04:23:05,457 or your builds will no longer be supported. 2026-07-06T04:23:05,458 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T04:23:05,458 ******************************************************************************** 2026-07-06T04:23:05,460 !! 2026-07-06T04:23:05,461 corresp(dist, value, root_dir) 2026-07-06T04:23:05,641 running dist_info 2026-07-06T04:23:05,651 creating /tmp/pip-modern-metadata-f_ln9q5j/CNVkit.egg-info 2026-07-06T04:23:05,652 writing /tmp/pip-modern-metadata-f_ln9q5j/CNVkit.egg-info/PKG-INFO 2026-07-06T04:23:05,657 writing dependency_links to /tmp/pip-modern-metadata-f_ln9q5j/CNVkit.egg-info/dependency_links.txt 2026-07-06T04:23:05,659 writing entry points to /tmp/pip-modern-metadata-f_ln9q5j/CNVkit.egg-info/entry_points.txt 2026-07-06T04:23:05,662 writing requirements to /tmp/pip-modern-metadata-f_ln9q5j/CNVkit.egg-info/requires.txt 2026-07-06T04:23:05,663 writing top-level names to /tmp/pip-modern-metadata-f_ln9q5j/CNVkit.egg-info/top_level.txt 2026-07-06T04:23:05,665 writing manifest file '/tmp/pip-modern-metadata-f_ln9q5j/CNVkit.egg-info/SOURCES.txt' 2026-07-06T04:23:05,690 reading manifest file '/tmp/pip-modern-metadata-f_ln9q5j/CNVkit.egg-info/SOURCES.txt' 2026-07-06T04:23:05,692 adding license file 'LICENSE' 2026-07-06T04:23:05,698 writing manifest file '/tmp/pip-modern-metadata-f_ln9q5j/CNVkit.egg-info/SOURCES.txt' 2026-07-06T04:23:05,699 creating '/tmp/pip-modern-metadata-f_ln9q5j/cnvkit-0.9.14.dist-info' 2026-07-06T04:23:05,825 Preparing metadata (pyproject.toml): finished with status 'done' 2026-07-06T04:23:05,831 Source in /tmp/pip-wheel-gyraq2a4/cnvkit_f7d7c3d501f14d2582225fa8d4ca7863 has version 0.9.14, which satisfies requirement cnvkit==0.9.14 from https://files.pythonhosted.org/packages/af/98/454bbb39ecbba8f77e8237b33545e74d19413fd9864074d1b868f1a2cf2e/cnvkit-0.9.14.tar.gz 2026-07-06T04:23:05,832 Removed cnvkit==0.9.14 from https://files.pythonhosted.org/packages/af/98/454bbb39ecbba8f77e8237b33545e74d19413fd9864074d1b868f1a2cf2e/cnvkit-0.9.14.tar.gz from build tracker '/tmp/pip-build-tracker-4cmwyy1v' 2026-07-06T04:23:05,839 Created temporary directory: /tmp/pip-unpack-by993_nu 2026-07-06T04:23:05,839 Building wheels for collected packages: cnvkit 2026-07-06T04:23:05,843 Created temporary directory: /tmp/pip-wheel-v_w0wdn7 2026-07-06T04:23:05,844 Destination directory: /tmp/pip-wheel-v_w0wdn7 2026-07-06T04:23:05,846 Building wheel for cnvkit (pyproject.toml): started 2026-07-06T04:23:05,847 Running command Building wheel for cnvkit (pyproject.toml) 2026-07-06T04:23:06,425 /tmp/pip-build-env-_yelhgah/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T04:23:06,425 !! 2026-07-06T04:23:06,426 ******************************************************************************** 2026-07-06T04:23:06,427 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T04:23:06,428 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T04:23:06,429 or your builds will no longer be supported. 2026-07-06T04:23:06,430 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T04:23:06,430 ******************************************************************************** 2026-07-06T04:23:06,431 !! 2026-07-06T04:23:06,432 corresp(dist, value, root_dir) 2026-07-06T04:23:06,502 running bdist_wheel 2026-07-06T04:23:06,520 running build 2026-07-06T04:23:06,520 running build_py 2026-07-06T04:23:06,527 creating build/lib/cnvlib 2026-07-06T04:23:06,529 copying cnvlib/scatter.py -> build/lib/cnvlib 2026-07-06T04:23:06,532 copying cnvlib/target.py -> build/lib/cnvlib 2026-07-06T04:23:06,534 copying cnvlib/reference.py -> build/lib/cnvlib 2026-07-06T04:23:06,537 copying cnvlib/vary.py -> build/lib/cnvlib 2026-07-06T04:23:06,540 copying cnvlib/fix.py -> build/lib/cnvlib 2026-07-06T04:23:06,542 copying cnvlib/segmetrics.py -> build/lib/cnvlib 2026-07-06T04:23:06,545 copying cnvlib/call.py -> build/lib/cnvlib 2026-07-06T04:23:06,547 copying cnvlib/import_rna.py -> build/lib/cnvlib 2026-07-06T04:23:06,550 copying cnvlib/rna.py -> build/lib/cnvlib 2026-07-06T04:23:06,553 copying cnvlib/params.py -> build/lib/cnvlib 2026-07-06T04:23:06,555 copying cnvlib/cnvkit.py -> build/lib/cnvlib 2026-07-06T04:23:06,556 copying cnvlib/commands.py -> build/lib/cnvlib 2026-07-06T04:23:06,561 copying cnvlib/core.py -> build/lib/cnvlib 2026-07-06T04:23:06,563 copying cnvlib/smoothing.py -> build/lib/cnvlib 2026-07-06T04:23:06,566 copying cnvlib/heatmap.py -> build/lib/cnvlib 2026-07-06T04:23:06,569 copying cnvlib/cluster.py -> build/lib/cnvlib 2026-07-06T04:23:06,571 copying cnvlib/segfilters.py -> build/lib/cnvlib 2026-07-06T04:23:06,574 copying cnvlib/descriptives.py -> build/lib/cnvlib 2026-07-06T04:23:06,576 copying cnvlib/antitarget.py -> build/lib/cnvlib 2026-07-06T04:23:06,579 copying cnvlib/cmdutil.py -> build/lib/cnvlib 2026-07-06T04:23:06,581 copying cnvlib/plots.py -> build/lib/cnvlib 2026-07-06T04:23:06,584 copying cnvlib/access.py -> build/lib/cnvlib 2026-07-06T04:23:06,587 copying cnvlib/export.py -> build/lib/cnvlib 2026-07-06T04:23:06,590 copying cnvlib/parallel.py -> build/lib/cnvlib 2026-07-06T04:23:06,592 copying cnvlib/batch.py -> build/lib/cnvlib 2026-07-06T04:23:06,595 copying cnvlib/purity.py -> build/lib/cnvlib 2026-07-06T04:23:06,598 copying cnvlib/importers.py -> build/lib/cnvlib 2026-07-06T04:23:06,600 copying cnvlib/__init__.py -> build/lib/cnvlib 2026-07-06T04:23:06,602 copying cnvlib/reports.py -> build/lib/cnvlib 2026-07-06T04:23:06,605 copying cnvlib/metrics.py -> build/lib/cnvlib 2026-07-06T04:23:06,607 copying cnvlib/coverage.py -> build/lib/cnvlib 2026-07-06T04:23:06,610 copying cnvlib/bintest.py -> build/lib/cnvlib 2026-07-06T04:23:06,613 copying cnvlib/autobin.py -> build/lib/cnvlib 2026-07-06T04:23:06,615 copying cnvlib/cnary.py -> build/lib/cnvlib 2026-07-06T04:23:06,619 copying cnvlib/_version.py -> build/lib/cnvlib 2026-07-06T04:23:06,620 copying cnvlib/diagram.py -> build/lib/cnvlib 2026-07-06T04:23:06,623 copying cnvlib/samutil.py -> build/lib/cnvlib 2026-07-06T04:23:06,626 creating build/lib/cnvlib/cli 2026-07-06T04:23:06,628 copying cnvlib/cli/cnv_gene_info.py -> build/lib/cnvlib/cli 2026-07-06T04:23:06,631 copying cnvlib/cli/genome_instability_index.py -> build/lib/cnvlib/cli 2026-07-06T04:23:06,633 copying cnvlib/cli/cnv_expression_correlate.py -> build/lib/cnvlib/cli 2026-07-06T04:23:06,635 copying cnvlib/cli/cnv_annotate.py -> build/lib/cnvlib/cli 2026-07-06T04:23:06,638 copying cnvlib/cli/cnv_updater.py -> build/lib/cnvlib/cli 2026-07-06T04:23:06,640 copying cnvlib/cli/guess_baits.py -> build/lib/cnvlib/cli 2026-07-06T04:23:06,642 copying cnvlib/cli/reference2targets.py -> build/lib/cnvlib/cli 2026-07-06T04:23:06,644 copying cnvlib/cli/__init__.py -> build/lib/cnvlib/cli 2026-07-06T04:23:06,646 creating build/lib/cnvlib/segmentation 2026-07-06T04:23:06,647 copying cnvlib/segmentation/none.py -> build/lib/cnvlib/segmentation 2026-07-06T04:23:06,649 copying cnvlib/segmentation/hmm.py -> build/lib/cnvlib/segmentation 2026-07-06T04:23:06,652 copying cnvlib/segmentation/haar.py -> build/lib/cnvlib/segmentation 2026-07-06T04:23:06,655 copying cnvlib/segmentation/cbs.py -> build/lib/cnvlib/segmentation 2026-07-06T04:23:06,656 copying cnvlib/segmentation/__init__.py -> build/lib/cnvlib/segmentation 2026-07-06T04:23:06,659 creating build/lib/skgenome 2026-07-06T04:23:06,660 copying skgenome/combiners.py -> build/lib/skgenome 2026-07-06T04:23:06,662 copying skgenome/gary.py -> build/lib/skgenome 2026-07-06T04:23:06,665 copying skgenome/subdivide.py -> build/lib/skgenome 2026-07-06T04:23:06,667 copying skgenome/rangelabel.py -> build/lib/skgenome 2026-07-06T04:23:06,669 copying skgenome/intersect.py -> build/lib/skgenome 2026-07-06T04:23:06,671 copying skgenome/cut.py -> build/lib/skgenome 2026-07-06T04:23:06,673 copying skgenome/chromnames.py -> build/lib/skgenome 2026-07-06T04:23:06,675 copying skgenome/_pysam.py -> build/lib/skgenome 2026-07-06T04:23:06,676 copying skgenome/chromsort.py -> build/lib/skgenome 2026-07-06T04:23:06,678 copying skgenome/__init__.py -> build/lib/skgenome 2026-07-06T04:23:06,680 copying skgenome/subtract.py -> build/lib/skgenome 2026-07-06T04:23:06,682 copying skgenome/merge.py -> build/lib/skgenome 2026-07-06T04:23:06,684 copying skgenome/genomebuild.py -> build/lib/skgenome 2026-07-06T04:23:06,686 creating build/lib/skgenome/cli 2026-07-06T04:23:06,687 copying skgenome/cli/__init__.py -> build/lib/skgenome/cli 2026-07-06T04:23:06,689 copying skgenome/cli/skg_convert.py -> build/lib/skgenome/cli 2026-07-06T04:23:06,692 creating build/lib/skgenome/tabio 2026-07-06T04:23:06,693 copying skgenome/tabio/vcfio.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,695 copying skgenome/tabio/bedio.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,697 copying skgenome/tabio/gff.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,699 copying skgenome/tabio/util.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,701 copying skgenome/tabio/genepred.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,703 copying skgenome/tabio/seqdict.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,705 copying skgenome/tabio/vcfsimple.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,707 copying skgenome/tabio/tab.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,709 copying skgenome/tabio/textcoord.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,710 copying skgenome/tabio/__init__.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,713 copying skgenome/tabio/seg.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,715 copying skgenome/tabio/picard.py -> build/lib/skgenome/tabio 2026-07-06T04:23:06,717 running egg_info 2026-07-06T04:23:06,727 writing CNVkit.egg-info/PKG-INFO 2026-07-06T04:23:06,732 writing dependency_links to CNVkit.egg-info/dependency_links.txt 2026-07-06T04:23:06,734 writing entry points to CNVkit.egg-info/entry_points.txt 2026-07-06T04:23:06,736 writing requirements to CNVkit.egg-info/requires.txt 2026-07-06T04:23:06,737 writing top-level names to CNVkit.egg-info/top_level.txt 2026-07-06T04:23:06,753 reading manifest file 'CNVkit.egg-info/SOURCES.txt' 2026-07-06T04:23:06,760 adding license file 'LICENSE' 2026-07-06T04:23:06,767 writing manifest file 'CNVkit.egg-info/SOURCES.txt' 2026-07-06T04:23:06,785 installing to build/bdist.linux-armv7l/wheel 2026-07-06T04:23:06,786 running install 2026-07-06T04:23:06,808 running install_lib 2026-07-06T04:23:06,814 creating build/bdist.linux-armv7l/wheel 2026-07-06T04:23:06,816 creating build/bdist.linux-armv7l/wheel/skgenome 2026-07-06T04:23:06,817 copying build/lib/skgenome/combiners.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,819 copying build/lib/skgenome/gary.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,823 creating build/bdist.linux-armv7l/wheel/skgenome/tabio 2026-07-06T04:23:06,824 copying build/lib/skgenome/tabio/vcfio.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,826 copying build/lib/skgenome/tabio/bedio.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,828 copying build/lib/skgenome/tabio/gff.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,830 copying build/lib/skgenome/tabio/util.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,832 copying build/lib/skgenome/tabio/genepred.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,834 copying build/lib/skgenome/tabio/seqdict.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,836 copying build/lib/skgenome/tabio/vcfsimple.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,838 copying build/lib/skgenome/tabio/tab.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,839 copying build/lib/skgenome/tabio/textcoord.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,841 copying build/lib/skgenome/tabio/__init__.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,844 copying build/lib/skgenome/tabio/seg.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,846 copying build/lib/skgenome/tabio/picard.py -> build/bdist.linux-armv7l/wheel/./skgenome/tabio 2026-07-06T04:23:06,848 copying build/lib/skgenome/subdivide.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,850 copying build/lib/skgenome/rangelabel.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,852 copying build/lib/skgenome/intersect.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,854 copying build/lib/skgenome/cut.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,856 copying build/lib/skgenome/chromnames.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,858 copying build/lib/skgenome/_pysam.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,860 copying build/lib/skgenome/chromsort.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,862 copying build/lib/skgenome/__init__.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,864 copying build/lib/skgenome/subtract.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,866 creating build/bdist.linux-armv7l/wheel/skgenome/cli 2026-07-06T04:23:06,867 copying build/lib/skgenome/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./skgenome/cli 2026-07-06T04:23:06,869 copying build/lib/skgenome/cli/skg_convert.py -> build/bdist.linux-armv7l/wheel/./skgenome/cli 2026-07-06T04:23:06,871 copying build/lib/skgenome/merge.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,873 copying build/lib/skgenome/genomebuild.py -> build/bdist.linux-armv7l/wheel/./skgenome 2026-07-06T04:23:06,876 creating build/bdist.linux-armv7l/wheel/cnvlib 2026-07-06T04:23:06,877 copying build/lib/cnvlib/scatter.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,880 copying build/lib/cnvlib/target.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,882 copying build/lib/cnvlib/reference.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,885 copying build/lib/cnvlib/vary.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,888 copying build/lib/cnvlib/fix.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,890 copying build/lib/cnvlib/segmetrics.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,893 copying build/lib/cnvlib/call.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,895 copying build/lib/cnvlib/import_rna.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,898 copying build/lib/cnvlib/rna.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,900 copying build/lib/cnvlib/params.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,902 copying build/lib/cnvlib/cnvkit.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,904 copying build/lib/cnvlib/commands.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,908 copying build/lib/cnvlib/core.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,910 copying build/lib/cnvlib/smoothing.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,913 copying build/lib/cnvlib/heatmap.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,915 copying build/lib/cnvlib/cluster.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,917 copying build/lib/cnvlib/segfilters.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,920 copying build/lib/cnvlib/descriptives.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,922 copying build/lib/cnvlib/antitarget.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,924 copying build/lib/cnvlib/cmdutil.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,927 copying build/lib/cnvlib/plots.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,929 copying build/lib/cnvlib/access.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,932 creating build/bdist.linux-armv7l/wheel/cnvlib/segmentation 2026-07-06T04:23:06,933 copying build/lib/cnvlib/segmentation/none.py -> build/bdist.linux-armv7l/wheel/./cnvlib/segmentation 2026-07-06T04:23:06,935 copying build/lib/cnvlib/segmentation/hmm.py -> build/bdist.linux-armv7l/wheel/./cnvlib/segmentation 2026-07-06T04:23:06,938 copying build/lib/cnvlib/segmentation/haar.py -> build/bdist.linux-armv7l/wheel/./cnvlib/segmentation 2026-07-06T04:23:06,942 copying build/lib/cnvlib/segmentation/cbs.py -> build/bdist.linux-armv7l/wheel/./cnvlib/segmentation 2026-07-06T04:23:06,944 copying build/lib/cnvlib/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/./cnvlib/segmentation 2026-07-06T04:23:06,947 copying build/lib/cnvlib/export.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,951 copying build/lib/cnvlib/parallel.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,955 copying build/lib/cnvlib/batch.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,958 copying build/lib/cnvlib/purity.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,961 copying build/lib/cnvlib/importers.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,964 copying build/lib/cnvlib/__init__.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,966 copying build/lib/cnvlib/reports.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,969 copying build/lib/cnvlib/metrics.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,972 creating build/bdist.linux-armv7l/wheel/cnvlib/cli 2026-07-06T04:23:06,973 copying build/lib/cnvlib/cli/cnv_gene_info.py -> build/bdist.linux-armv7l/wheel/./cnvlib/cli 2026-07-06T04:23:06,977 copying build/lib/cnvlib/cli/genome_instability_index.py -> build/bdist.linux-armv7l/wheel/./cnvlib/cli 2026-07-06T04:23:06,980 copying build/lib/cnvlib/cli/cnv_expression_correlate.py -> build/bdist.linux-armv7l/wheel/./cnvlib/cli 2026-07-06T04:23:06,983 copying build/lib/cnvlib/cli/cnv_annotate.py -> build/bdist.linux-armv7l/wheel/./cnvlib/cli 2026-07-06T04:23:06,985 copying build/lib/cnvlib/cli/cnv_updater.py -> build/bdist.linux-armv7l/wheel/./cnvlib/cli 2026-07-06T04:23:06,987 copying build/lib/cnvlib/cli/guess_baits.py -> build/bdist.linux-armv7l/wheel/./cnvlib/cli 2026-07-06T04:23:06,991 copying build/lib/cnvlib/cli/reference2targets.py -> build/bdist.linux-armv7l/wheel/./cnvlib/cli 2026-07-06T04:23:06,993 copying build/lib/cnvlib/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./cnvlib/cli 2026-07-06T04:23:06,995 copying build/lib/cnvlib/coverage.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:06,998 copying build/lib/cnvlib/bintest.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:07,001 copying build/lib/cnvlib/autobin.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:07,004 copying build/lib/cnvlib/cnary.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:07,007 copying build/lib/cnvlib/_version.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:07,009 copying build/lib/cnvlib/diagram.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:07,012 copying build/lib/cnvlib/samutil.py -> build/bdist.linux-armv7l/wheel/./cnvlib 2026-07-06T04:23:07,014 running install_egg_info 2026-07-06T04:23:07,021 Copying CNVkit.egg-info to build/bdist.linux-armv7l/wheel/./CNVkit-0.9.14-py3.11.egg-info 2026-07-06T04:23:07,036 running install_scripts 2026-07-06T04:23:07,049 creating build/bdist.linux-armv7l/wheel/cnvkit-0.9.14.dist-info/WHEEL 2026-07-06T04:23:07,052 creating '/tmp/pip-wheel-v_w0wdn7/.tmp-9hemla6g/cnvkit-0.9.14-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-07-06T04:23:07,055 adding 'cnvkit-0.9.14.dist-info/licenses/LICENSE' 2026-07-06T04:23:07,057 adding 'cnvlib/__init__.py' 2026-07-06T04:23:07,058 adding 'cnvlib/_version.py' 2026-07-06T04:23:07,060 adding 'cnvlib/access.py' 2026-07-06T04:23:07,062 adding 'cnvlib/antitarget.py' 2026-07-06T04:23:07,064 adding 'cnvlib/autobin.py' 2026-07-06T04:23:07,067 adding 'cnvlib/batch.py' 2026-07-06T04:23:07,069 adding 'cnvlib/bintest.py' 2026-07-06T04:23:07,072 adding 'cnvlib/call.py' 2026-07-06T04:23:07,074 adding 'cnvlib/cluster.py' 2026-07-06T04:23:07,077 adding 'cnvlib/cmdutil.py' 2026-07-06T04:23:07,082 adding 'cnvlib/cnary.py' 2026-07-06T04:23:07,083 adding 'cnvlib/cnvkit.py' 2026-07-06T04:23:07,095 adding 'cnvlib/commands.py' 2026-07-06T04:23:07,098 adding 'cnvlib/core.py' 2026-07-06T04:23:07,101 adding 'cnvlib/coverage.py' 2026-07-06T04:23:07,103 adding 'cnvlib/descriptives.py' 2026-07-06T04:23:07,106 adding 'cnvlib/diagram.py' 2026-07-06T04:23:07,110 adding 'cnvlib/export.py' 2026-07-06T04:23:07,113 adding 'cnvlib/fix.py' 2026-07-06T04:23:07,116 adding 'cnvlib/heatmap.py' 2026-07-06T04:23:07,117 adding 'cnvlib/import_rna.py' 2026-07-06T04:23:07,119 adding 'cnvlib/importers.py' 2026-07-06T04:23:07,121 adding 'cnvlib/metrics.py' 2026-07-06T04:23:07,122 adding 'cnvlib/parallel.py' 2026-07-06T04:23:07,123 adding 'cnvlib/params.py' 2026-07-06T04:23:07,126 adding 'cnvlib/plots.py' 2026-07-06T04:23:07,128 adding 'cnvlib/purity.py' 2026-07-06T04:23:07,132 adding 'cnvlib/reference.py' 2026-07-06T04:23:07,135 adding 'cnvlib/reports.py' 2026-07-06T04:23:07,139 adding 'cnvlib/rna.py' 2026-07-06T04:23:07,141 adding 'cnvlib/samutil.py' 2026-07-06T04:23:07,146 adding 'cnvlib/scatter.py' 2026-07-06T04:23:07,149 adding 'cnvlib/segfilters.py' 2026-07-06T04:23:07,151 adding 'cnvlib/segmetrics.py' 2026-07-06T04:23:07,154 adding 'cnvlib/smoothing.py' 2026-07-06T04:23:07,156 adding 'cnvlib/target.py' 2026-07-06T04:23:07,158 adding 'cnvlib/vary.py' 2026-07-06T04:23:07,160 adding 'cnvlib/cli/__init__.py' 2026-07-06T04:23:07,161 adding 'cnvlib/cli/cnv_annotate.py' 2026-07-06T04:23:07,163 adding 'cnvlib/cli/cnv_expression_correlate.py' 2026-07-06T04:23:07,165 adding 'cnvlib/cli/cnv_gene_info.py' 2026-07-06T04:23:07,166 adding 'cnvlib/cli/cnv_updater.py' 2026-07-06T04:23:07,168 adding 'cnvlib/cli/genome_instability_index.py' 2026-07-06T04:23:07,170 adding 'cnvlib/cli/guess_baits.py' 2026-07-06T04:23:07,172 adding 'cnvlib/cli/reference2targets.py' 2026-07-06T04:23:07,175 adding 'cnvlib/segmentation/__init__.py' 2026-07-06T04:23:07,177 adding 'cnvlib/segmentation/cbs.py' 2026-07-06T04:23:07,180 adding 'cnvlib/segmentation/haar.py' 2026-07-06T04:23:07,185 adding 'cnvlib/segmentation/hmm.py' 2026-07-06T04:23:07,186 adding 'cnvlib/segmentation/none.py' 2026-07-06T04:23:07,188 adding 'skgenome/__init__.py' 2026-07-06T04:23:07,189 adding 'skgenome/_pysam.py' 2026-07-06T04:23:07,191 adding 'skgenome/chromnames.py' 2026-07-06T04:23:07,192 adding 'skgenome/chromsort.py' 2026-07-06T04:23:07,194 adding 'skgenome/combiners.py' 2026-07-06T04:23:07,195 adding 'skgenome/cut.py' 2026-07-06T04:23:07,199 adding 'skgenome/gary.py' 2026-07-06T04:23:07,200 adding 'skgenome/genomebuild.py' 2026-07-06T04:23:07,202 adding 'skgenome/intersect.py' 2026-07-06T04:23:07,204 adding 'skgenome/merge.py' 2026-07-06T04:23:07,205 adding 'skgenome/rangelabel.py' 2026-07-06T04:23:07,206 adding 'skgenome/subdivide.py' 2026-07-06T04:23:07,208 adding 'skgenome/subtract.py' 2026-07-06T04:23:07,209 adding 'skgenome/cli/__init__.py' 2026-07-06T04:23:07,210 adding 'skgenome/cli/skg_convert.py' 2026-07-06T04:23:07,213 adding 'skgenome/tabio/__init__.py' 2026-07-06T04:23:07,215 adding 'skgenome/tabio/bedio.py' 2026-07-06T04:23:07,216 adding 'skgenome/tabio/genepred.py' 2026-07-06T04:23:07,218 adding 'skgenome/tabio/gff.py' 2026-07-06T04:23:07,219 adding 'skgenome/tabio/picard.py' 2026-07-06T04:23:07,221 adding 'skgenome/tabio/seg.py' 2026-07-06T04:23:07,223 adding 'skgenome/tabio/seqdict.py' 2026-07-06T04:23:07,224 adding 'skgenome/tabio/tab.py' 2026-07-06T04:23:07,225 adding 'skgenome/tabio/textcoord.py' 2026-07-06T04:23:07,227 adding 'skgenome/tabio/util.py' 2026-07-06T04:23:07,229 adding 'skgenome/tabio/vcfio.py' 2026-07-06T04:23:07,230 adding 'skgenome/tabio/vcfsimple.py' 2026-07-06T04:23:07,232 adding 'cnvkit-0.9.14.dist-info/METADATA' 2026-07-06T04:23:07,233 adding 'cnvkit-0.9.14.dist-info/WHEEL' 2026-07-06T04:23:07,234 adding 'cnvkit-0.9.14.dist-info/entry_points.txt' 2026-07-06T04:23:07,235 adding 'cnvkit-0.9.14.dist-info/top_level.txt' 2026-07-06T04:23:07,237 adding 'cnvkit-0.9.14.dist-info/RECORD' 2026-07-06T04:23:07,243 removing build/bdist.linux-armv7l/wheel 2026-07-06T04:23:07,359 Building wheel for cnvkit (pyproject.toml): finished with status 'done' 2026-07-06T04:23:07,374 Created wheel for cnvkit: filename=cnvkit-0.9.14-py3-none-any.whl size=281364 sha256=d735d660de0ad94c693abf45851b3f6dedd1ee45da7f74f9298555287ea8a06f 2026-07-06T04:23:07,375 Stored in directory: /tmp/pip-ephem-wheel-cache-mboc_zfn/wheels/d4/98/91/b12a5079698526847f29389dbbd94dc71862128d93c78dda5a 2026-07-06T04:23:07,393 Successfully built cnvkit 2026-07-06T04:23:07,406 Removed build tracker: '/tmp/pip-build-tracker-4cmwyy1v'