2026-07-06T12:34:23,413 Created temporary directory: /tmp/pip-ephem-wheel-cache-wvvcfzei 2026-07-06T12:34:23,415 Created temporary directory: /tmp/pip-build-tracker-ncxsjnks 2026-07-06T12:34:23,415 Initialized build tracking at /tmp/pip-build-tracker-ncxsjnks 2026-07-06T12:34:23,416 Created build tracker: /tmp/pip-build-tracker-ncxsjnks 2026-07-06T12:34:23,416 Entered build tracker: /tmp/pip-build-tracker-ncxsjnks 2026-07-06T12:34:23,417 Created temporary directory: /tmp/pip-wheel-n15zkhs4 2026-07-06T12:34:23,420 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b7-py3-none-any.whl#sha256=9b5a7d175d0662fb4b210ece019e2d38397f02a8d1c5adf51442cd6dc77c0a52 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,973 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b6-py3-none-any.whl#sha256=2d45787d6e69a1317464b855967853e3ac7a22b3b27f17e8a636753040a93035 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,973 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b5-py3-none-any.whl#sha256=a60f524330ca169f9e3c15f5c35c00b8d0144fbfa2127fd8172ecbf45a823680 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,974 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b4-py3-none-any.whl#sha256=d419905e626e6790ed00972938fb269e5be969b77ac02c2ec581431c14ca9c06 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,975 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b3-py3-none-any.whl#sha256=937521bdd7ccf2f2b88c1d6a1c9e70265dc1efd65495c57d291ae560bebdd535 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,975 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b2-py3-none-any.whl#sha256=dc34830c4791cef76913516e175f6c69d921dd26db0b2c11395e64bcfff4354e (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,976 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b0-py3-none-any.whl#sha256=c74c0e54143586e25d9c1934b2d61f28330897547f50360edf68725306cd0d48 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,976 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.2b0-py3-none-any.whl#sha256=a3c81606d051b477612e1eeed371682fdb4d1fa86aa41c28ff73dc8f44003e14 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,977 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.1b0-py3-none-any.whl#sha256=5477ba6a7bdacacbd72882e68d7eaceb2a24f32ab32007d2fe70bdab95a2df63 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,978 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3b0-py3-none-any.whl#sha256=e484efa82b28bf099ece04ecdc9a642dafd23ffc44ae414d77989f9c576bb96a (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,978 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0b1-py3-none-any.whl#sha256=6d36929f4411ac1ff69548230bf74d77c4cc75e68aead196203186fb26094e49 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,979 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0a1-py3-none-any.whl#sha256=c088df2fbccef99c06f812beb1584e487375276c582430f35a8a78620ea3a41f (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T12:34:23,979 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-07-06T12:34:23,980 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipp/ 2026-07-06T12:34:24,006 Given no hashes to check 1 links for project 'scipion-em-xmipp': discarding no candidates 2026-07-06T12:34:24,025 Collecting scipion-em-xmipp==29.0.0 2026-07-06T12:34:24,028 Created temporary directory: /tmp/pip-unpack-j650r3q2 2026-07-06T12:34:24,264 Downloading scipion_em_xmipp-29.0.0.tar.gz (1.9 MB) 2026-07-06T12:34:25,178 Added scipion-em-xmipp==29.0.0 from https://files.pythonhosted.org/packages/5b/9c/e8fe689bf1b2f94dab76a780d35e6449f4828550699d8ff1c429aef71297/scipion_em_xmipp-29.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-ncxsjnks' 2026-07-06T12:34:25,182 Created temporary directory: /tmp/pip-build-env-z9vvsvbu 2026-07-06T12:34:25,187 Installing build dependencies: started 2026-07-06T12:34:25,188 Running command pip subprocess to install build dependencies 2026-07-06T12:34:26,359 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-07-06T12:34:26,769 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-06T12:34:26,792 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-06T12:34:28,608 Collecting setuptools 2026-07-06T12:34:28,629 Using cached setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-06T12:34:31,530 Installing collected packages: setuptools 2026-07-06T12:34:34,615 Successfully installed setuptools-83.0.0 2026-07-06T12:34:34,883 Installing build dependencies: finished with status 'done' 2026-07-06T12:34:34,889 Getting requirements to build wheel: started 2026-07-06T12:34:34,890 Running command Getting requirements to build wheel 2026-07-06T12:34:35,487 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-07-06T12:34:35,487 `flat-layout` detected -- analysing . 2026-07-06T12:34:35,512 discovered packages -- ['xmipp3', 'xmipp3.protocols', 'xmipp3.tests', 'xmipp3.viewers', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.tests', 'xmipp3.legacy.viewers'] 2026-07-06T12:34:35,517 /tmp/pip-build-env-z9vvsvbu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T12:34:35,518 !! 2026-07-06T12:34:35,518 ******************************************************************************** 2026-07-06T12:34:35,519 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T12:34:35,520 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T12:34:35,520 or your builds will no longer be supported. 2026-07-06T12:34:35,521 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T12:34:35,522 ******************************************************************************** 2026-07-06T12:34:35,523 !! 2026-07-06T12:34:35,523 corresp(dist, value, root_dir) 2026-07-06T12:34:35,601 running egg_info 2026-07-06T12:34:35,606 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-07-06T12:34:35,610 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-07-06T12:34:35,612 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-07-06T12:34:35,613 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-07-06T12:34:35,614 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-07-06T12:34:35,654 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T12:34:35,669 reading manifest template 'MANIFEST.in' 2026-07-06T12:34:35,671 adding license file 'LICENSE' 2026-07-06T12:34:35,685 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T12:34:35,783 Getting requirements to build wheel: finished with status 'done' 2026-07-06T12:34:35,786 Created temporary directory: /tmp/pip-modern-metadata-nd_7xqrz 2026-07-06T12:34:35,788 Preparing metadata (pyproject.toml): started 2026-07-06T12:34:35,790 Running command Preparing metadata (pyproject.toml) 2026-07-06T12:34:36,382 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-07-06T12:34:36,382 `flat-layout` detected -- analysing . 2026-07-06T12:34:36,401 discovered packages -- ['xmipp3', 'xmipp3.protocols', 'xmipp3.tests', 'xmipp3.viewers', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.tests', 'xmipp3.legacy.viewers'] 2026-07-06T12:34:36,405 /tmp/pip-build-env-z9vvsvbu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T12:34:36,406 !! 2026-07-06T12:34:36,407 ******************************************************************************** 2026-07-06T12:34:36,407 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T12:34:36,408 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T12:34:36,409 or your builds will no longer be supported. 2026-07-06T12:34:36,410 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T12:34:36,410 ******************************************************************************** 2026-07-06T12:34:36,411 !! 2026-07-06T12:34:36,412 corresp(dist, value, root_dir) 2026-07-06T12:34:36,489 running dist_info 2026-07-06T12:34:36,500 creating /tmp/pip-modern-metadata-nd_7xqrz/scipion_em_xmipp.egg-info 2026-07-06T12:34:36,501 writing /tmp/pip-modern-metadata-nd_7xqrz/scipion_em_xmipp.egg-info/PKG-INFO 2026-07-06T12:34:36,504 writing dependency_links to /tmp/pip-modern-metadata-nd_7xqrz/scipion_em_xmipp.egg-info/dependency_links.txt 2026-07-06T12:34:36,506 writing entry points to /tmp/pip-modern-metadata-nd_7xqrz/scipion_em_xmipp.egg-info/entry_points.txt 2026-07-06T12:34:36,507 writing requirements to /tmp/pip-modern-metadata-nd_7xqrz/scipion_em_xmipp.egg-info/requires.txt 2026-07-06T12:34:36,508 writing top-level names to /tmp/pip-modern-metadata-nd_7xqrz/scipion_em_xmipp.egg-info/top_level.txt 2026-07-06T12:34:36,509 writing manifest file '/tmp/pip-modern-metadata-nd_7xqrz/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T12:34:36,545 reading manifest file '/tmp/pip-modern-metadata-nd_7xqrz/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T12:34:36,547 reading manifest template 'MANIFEST.in' 2026-07-06T12:34:36,550 adding license file 'LICENSE' 2026-07-06T12:34:36,560 writing manifest file '/tmp/pip-modern-metadata-nd_7xqrz/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T12:34:36,562 creating '/tmp/pip-modern-metadata-nd_7xqrz/scipion_em_xmipp-29.0.0.dist-info' 2026-07-06T12:34:36,689 Preparing metadata (pyproject.toml): finished with status 'done' 2026-07-06T12:34:36,693 Source in /tmp/pip-wheel-n15zkhs4/scipion-em-xmipp_d88c15c9d02242419d62369c4b696346 has version 29.0.0, which satisfies requirement scipion-em-xmipp==29.0.0 from https://files.pythonhosted.org/packages/5b/9c/e8fe689bf1b2f94dab76a780d35e6449f4828550699d8ff1c429aef71297/scipion_em_xmipp-29.0.0.tar.gz 2026-07-06T12:34:36,694 Removed scipion-em-xmipp==29.0.0 from https://files.pythonhosted.org/packages/5b/9c/e8fe689bf1b2f94dab76a780d35e6449f4828550699d8ff1c429aef71297/scipion_em_xmipp-29.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-ncxsjnks' 2026-07-06T12:34:36,699 Created temporary directory: /tmp/pip-unpack-jr9fcq8e 2026-07-06T12:34:36,700 Building wheels for collected packages: scipion-em-xmipp 2026-07-06T12:34:36,704 Created temporary directory: /tmp/pip-wheel-2ek6t0ea 2026-07-06T12:34:36,705 Destination directory: /tmp/pip-wheel-2ek6t0ea 2026-07-06T12:34:36,707 Building wheel for scipion-em-xmipp (pyproject.toml): started 2026-07-06T12:34:36,708 Running command Building wheel for scipion-em-xmipp (pyproject.toml) 2026-07-06T12:34:37,260 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-07-06T12:34:37,260 `flat-layout` detected -- analysing . 2026-07-06T12:34:37,279 discovered packages -- ['xmipp3', 'xmipp3.protocols', 'xmipp3.tests', 'xmipp3.viewers', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.protocols', 'xmipp3.legacy.tests', 'xmipp3.legacy.viewers'] 2026-07-06T12:34:37,283 /tmp/pip-build-env-z9vvsvbu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T12:34:37,284 !! 2026-07-06T12:34:37,285 ******************************************************************************** 2026-07-06T12:34:37,286 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T12:34:37,287 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T12:34:37,287 or your builds will no longer be supported. 2026-07-06T12:34:37,288 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T12:34:37,289 ******************************************************************************** 2026-07-06T12:34:37,290 !! 2026-07-06T12:34:37,291 corresp(dist, value, root_dir) 2026-07-06T12:34:37,359 running bdist_wheel 2026-07-06T12:34:37,377 running build 2026-07-06T12:34:37,378 running build_py 2026-07-06T12:34:37,384 creating build/lib/xmipp3 2026-07-06T12:34:37,386 copying xmipp3/__init__.py -> build/lib/xmipp3 2026-07-06T12:34:37,389 copying xmipp3/wizards.py -> build/lib/xmipp3 2026-07-06T12:34:37,392 copying xmipp3/protocolsCollectInfo.py -> build/lib/xmipp3 2026-07-06T12:34:37,395 copying xmipp3/constants.py -> build/lib/xmipp3 2026-07-06T12:34:37,396 copying xmipp3/checkProtocolsConf.py -> build/lib/xmipp3 2026-07-06T12:34:37,399 copying xmipp3/logParser.py -> build/lib/xmipp3 2026-07-06T12:34:37,400 copying xmipp3/version.py -> build/lib/xmipp3 2026-07-06T12:34:37,402 copying xmipp3/bibtex.py -> build/lib/xmipp3 2026-07-06T12:34:37,405 copying xmipp3/programs.py -> build/lib/xmipp3 2026-07-06T12:34:37,408 copying xmipp3/utils.py -> build/lib/xmipp3 2026-07-06T12:34:37,410 copying xmipp3/base.py -> build/lib/xmipp3 2026-07-06T12:34:37,415 creating build/lib/xmipp3/protocols 2026-07-06T12:34:37,416 copying xmipp3/protocols/protocol_movie_split_frames.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,419 copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,422 copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,425 copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,428 copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,430 copying xmipp3/protocols/protocol_tilt_analysis.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,433 copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,435 copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,438 copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,441 copying xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,444 copying xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,446 copying xmipp3/protocols/protocol_classes_2d_mapping.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,449 copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,452 copying xmipp3/protocols/protocol_rotate_volume.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,454 copying xmipp3/protocols/protocol_flexalign.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,457 copying xmipp3/protocols/protocol_structure_map.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,460 copying xmipp3/protocols/protocol_validate_fscq.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,463 copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,465 copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,468 copying xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,471 copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,474 copying xmipp3/protocols/protocol_analyze_local_ctf.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,477 copying xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,479 copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,482 copying xmipp3/protocols/protocol_ctf_correct_phase.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,485 copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,487 copying xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,490 copying xmipp3/protocols/protocol_consensus_classes.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,494 copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,496 copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,499 copying xmipp3/protocols/protocol_core_analysis.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,502 copying xmipp3/protocols/protocol_cl2d_clustering.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,505 copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,507 copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,510 copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,512 copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,515 copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,517 copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,520 copying xmipp3/protocols/protocol_simulate_ctf.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,523 copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,525 copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,528 copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,530 copying xmipp3/protocols/protocol_angular_graph_consistency.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,533 copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,536 copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,538 copying xmipp3/protocols/protocol_phantom_create.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,541 copying xmipp3/protocols/protocol_resolution_deepres.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,543 copying xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,546 copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,549 copying xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,551 copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,555 copying xmipp3/protocols/protocol_align_volume_and_particles.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,558 copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,561 copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,564 copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,567 copying xmipp3/protocols/protocol_resolution_bfactor.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,569 copying xmipp3/protocols/protocol_local_ctf.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,572 copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,574 copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,577 copying xmipp3/protocols/protocol_resolution_fso.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,579 copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,582 copying xmipp3/protocols/protocol_consensus_local_ctf.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,585 copying xmipp3/protocols/protocol_eliminate_empty_images.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,587 copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,590 copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,592 copying xmipp3/protocols/protocol_apply_zernike3d.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,595 copying xmipp3/protocols/protocol_alignPCA_2D.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,598 copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,601 copying xmipp3/protocols/protocol_shift_volume.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,604 copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,607 copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,609 copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,612 copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,615 copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,617 copying xmipp3/protocols/protocol_deep_hand.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,619 copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,622 copying xmipp3/protocols/protocol_screen_deepConsensus.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,626 copying xmipp3/protocols/protocol_volume_consensus.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,628 copying xmipp3/protocols/protocol_compute_likelihood.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,631 copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,634 copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,637 copying xmipp3/protocols/protocol_movie_dose_analysis.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,640 copying xmipp3/protocols/protocol_center_particles.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,643 copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,645 copying xmipp3/protocols/protocol_pick_noise.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,648 copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,650 copying xmipp3/protocols/protocol_shift_particles.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,653 copying xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,655 copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,658 copying xmipp3/protocols/protocol_volume_local_adjust.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,660 copying xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,663 copying xmipp3/protocols/protocol_convert_pdb.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,665 copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,669 copying xmipp3/protocols/protocol_volume_adjust_sub.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,671 copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,674 copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols 2026-07-06T12:34:37,679 creating build/lib/xmipp3/tests 2026-07-06T12:34:37,680 copying xmipp3/tests/test_protocol_validate_fscq.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,682 copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,684 copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,686 copying xmipp3/tests/test_protocols_fso.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,688 copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,690 copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,693 copying xmipp3/tests/test_protocols_continuousflex.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,695 copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,699 copying xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,701 copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,703 copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,706 copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,708 copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,711 copying xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,714 copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,716 copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,719 copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,723 copying xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,725 copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,728 copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,730 copying xmipp3/tests/test_protocol_likelihood.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,732 copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,734 copying xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,737 copying xmipp3/tests/test_protocol_split_frames.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,739 copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,742 copying xmipp3/tests/test_protocols_deepcenter_predict.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,744 copying xmipp3/tests/test_protocols_deepres.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,746 copying xmipp3/tests/test_protocols_zernike3d.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,748 copying xmipp3/tests/test_protocol_monodir.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,750 copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,753 copying xmipp3/tests/test_protocols_local_defocus.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,755 copying xmipp3/tests/test_protocol_simulate_ctf.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,757 copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,760 copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,762 copying xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/lib/xmipp3/tests 2026-07-06T12:34:37,766 creating build/lib/xmipp3/viewers 2026-07-06T12:34:37,767 copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,770 copying xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,772 copying xmipp3/viewers/viewer_structure_map.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,775 copying xmipp3/viewers/viewer_resolution_fso.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,777 copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,779 copying xmipp3/viewers/viewer_dose_analysis.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,781 copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,784 copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,786 copying xmipp3/viewers/viewer_deep_consensus.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,788 copying xmipp3/viewers/viewer_resolution_deepres.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,790 copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,793 copying xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,795 copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,797 copying xmipp3/viewers/viewer_consensus_classes.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,799 copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,802 copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,804 copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,805 copying xmipp3/viewers/viewer_eliminate_empty_images.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,808 copying xmipp3/viewers/viewer_volume_consensus.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,809 copying xmipp3/viewers/viewer_validate_fscq.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,812 copying xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,814 copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,816 copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,818 copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,820 copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,823 copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,825 copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,827 copying xmipp3/viewers/viewer_resolution_bfactor.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,829 copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,832 copying xmipp3/viewers/viewer_local_sharpening.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,834 copying xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,836 copying xmipp3/viewers/viewer_cl2d_clustering.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,838 copying xmipp3/viewers/viewer_LL_matrix.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,841 copying xmipp3/viewers/viewer_subtract_projection.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,842 copying xmipp3/viewers/viewer_analyze_local_ctf.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,845 copying xmipp3/viewers/viewer_volume_subtraction.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,847 copying xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,849 copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,851 copying xmipp3/viewers/viewer_deepEMHancer.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,853 copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers 2026-07-06T12:34:37,856 creating build/lib/xmipp3/convert 2026-07-06T12:34:37,857 copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert 2026-07-06T12:34:37,860 copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert 2026-07-06T12:34:37,862 copying xmipp3/convert/io_coordinates.py -> build/lib/xmipp3/convert 2026-07-06T12:34:37,864 copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert 2026-07-06T12:34:37,867 creating build/lib/xmipp3/legacy 2026-07-06T12:34:37,868 copying xmipp3/legacy/__init__.py -> build/lib/xmipp3/legacy 2026-07-06T12:34:37,871 creating build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,872 copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,874 copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,877 copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,880 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,883 copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,886 copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,890 copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,893 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,895 copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,898 copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,901 copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,903 copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:37,907 creating build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:37,908 copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:37,909 copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:37,912 copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:37,914 copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:37,917 copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:37,921 creating build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,922 copying xmipp3/legacy/protocols/protocol_deep_align.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,925 copying xmipp3/legacy/protocols/__init__.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,927 copying xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,930 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,932 copying xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,934 copying xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,937 copying xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,939 copying xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,942 copying xmipp3/legacy/protocols/protocol_split_volume.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,944 copying xmipp3/legacy/protocols/protocol_mltomo.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,947 copying xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,950 copying xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,952 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,955 copying xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,958 copying xmipp3/legacy/protocols/protocol_deep_center.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,960 copying xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,962 copying xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,965 copying xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,968 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,971 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,973 copying xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,975 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,978 copying xmipp3/legacy/protocols/protocol_solid_angles.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,980 copying xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,983 copying xmipp3/legacy/protocols/protocol_movie_average.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,985 copying xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,988 copying xmipp3/legacy/protocols/protocol_enrich.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,990 copying xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,993 copying xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T12:34:37,996 creating build/lib/xmipp3/legacy/tests 2026-07-06T12:34:37,997 copying xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/tests 2026-07-06T12:34:37,999 copying xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/legacy/tests 2026-07-06T12:34:38,001 copying xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/legacy/tests 2026-07-06T12:34:38,003 copying xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/tests 2026-07-06T12:34:38,005 copying xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/legacy/tests 2026-07-06T12:34:38,007 copying xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/legacy/tests 2026-07-06T12:34:38,010 copying xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/lib/xmipp3/legacy/tests 2026-07-06T12:34:38,012 copying xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/legacy/tests 2026-07-06T12:34:38,015 copying xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/legacy/tests 2026-07-06T12:34:38,017 copying xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/legacy/tests 2026-07-06T12:34:38,019 copying xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/legacy/tests 2026-07-06T12:34:38,021 creating build/lib/xmipp3/legacy/viewers 2026-07-06T12:34:38,023 copying xmipp3/legacy/viewers/viewer_deep_align.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T12:34:38,025 copying xmipp3/legacy/viewers/viewer_mltomo.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T12:34:38,027 copying xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T12:34:38,029 copying xmipp3/legacy/viewers/viewer_solid_angles.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T12:34:38,031 copying xmipp3/legacy/viewers/viewer_split_volume.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T12:34:38,033 copying xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T12:34:38,035 running egg_info 2026-07-06T12:34:38,045 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-07-06T12:34:38,048 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-07-06T12:34:38,049 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-07-06T12:34:38,051 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-07-06T12:34:38,052 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-07-06T12:34:38,078 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T12:34:38,093 reading manifest template 'MANIFEST.in' 2026-07-06T12:34:38,095 adding license file 'LICENSE' 2026-07-06T12:34:38,108 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T12:34:38,119 copying xmipp3/protocols.conf -> build/lib/xmipp3 2026-07-06T12:34:38,122 copying xmipp3/xmipp_logo.png -> build/lib/xmipp3 2026-07-06T12:34:38,125 copying xmipp3/xmipp_logo_devel.png -> build/lib/xmipp3 2026-07-06T12:34:38,158 installing to build/bdist.linux-armv7l/wheel 2026-07-06T12:34:38,159 running install 2026-07-06T12:34:38,181 running install_lib 2026-07-06T12:34:38,187 creating build/bdist.linux-armv7l/wheel 2026-07-06T12:34:38,189 creating build/bdist.linux-armv7l/wheel/xmipp3 2026-07-06T12:34:38,193 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols 2026-07-06T12:34:38,194 copying build/lib/xmipp3/protocols/protocol_movie_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,196 copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,199 copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,202 copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,205 copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,207 copying build/lib/xmipp3/protocols/protocol_tilt_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,210 copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,213 copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,215 copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,218 copying build/lib/xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,221 copying build/lib/xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,224 copying build/lib/xmipp3/protocols/protocol_classes_2d_mapping.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,227 copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,230 copying build/lib/xmipp3/protocols/protocol_rotate_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,233 copying build/lib/xmipp3/protocols/protocol_flexalign.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,237 copying build/lib/xmipp3/protocols/protocol_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,240 copying build/lib/xmipp3/protocols/protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,243 copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,246 copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,249 copying build/lib/xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,252 copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,256 copying build/lib/xmipp3/protocols/protocol_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,259 copying build/lib/xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,262 copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,265 copying build/lib/xmipp3/protocols/protocol_ctf_correct_phase.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,268 copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,270 copying build/lib/xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,274 copying build/lib/xmipp3/protocols/protocol_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,277 copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,280 copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,283 copying build/lib/xmipp3/protocols/protocol_core_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,286 copying build/lib/xmipp3/protocols/protocol_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,289 copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,292 copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,295 copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,298 copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,301 copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,304 copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,308 copying build/lib/xmipp3/protocols/protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,311 copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,314 copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,317 copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,320 copying build/lib/xmipp3/protocols/protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,324 copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,326 copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,329 copying build/lib/xmipp3/protocols/protocol_phantom_create.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,332 copying build/lib/xmipp3/protocols/protocol_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,335 copying build/lib/xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,338 copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,341 copying build/lib/xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,344 copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,350 copying build/lib/xmipp3/protocols/protocol_align_volume_and_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,352 copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,355 copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,358 copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,361 copying build/lib/xmipp3/protocols/protocol_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,364 copying build/lib/xmipp3/protocols/protocol_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,367 copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,370 copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,373 copying build/lib/xmipp3/protocols/protocol_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,375 copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,378 copying build/lib/xmipp3/protocols/protocol_consensus_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,380 copying build/lib/xmipp3/protocols/protocol_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,383 copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,385 copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,388 copying build/lib/xmipp3/protocols/protocol_apply_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,391 copying build/lib/xmipp3/protocols/protocol_alignPCA_2D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,393 copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,396 copying build/lib/xmipp3/protocols/protocol_shift_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,399 copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,402 copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,404 copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,407 copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,409 copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,412 copying build/lib/xmipp3/protocols/protocol_deep_hand.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,415 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,416 copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,418 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,421 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,424 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,426 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,429 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,432 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,434 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,437 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,439 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,442 copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,444 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T12:34:38,447 copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,449 copying build/lib/xmipp3/protocols/protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,453 copying build/lib/xmipp3/protocols/protocol_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,456 copying build/lib/xmipp3/protocols/protocol_compute_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,459 copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,461 copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,464 copying build/lib/xmipp3/protocols/protocol_movie_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,467 copying build/lib/xmipp3/protocols/protocol_center_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,470 copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,480 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:38,481 copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:38,483 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:38,486 copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:38,488 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:38,491 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-07-06T12:34:38,494 copying build/lib/xmipp3/protocols/protocol_pick_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,497 copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,500 copying build/lib/xmipp3/protocols/protocol_shift_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,502 copying build/lib/xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,505 copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,508 copying build/lib/xmipp3/protocols/protocol_volume_local_adjust.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,510 copying build/lib/xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,513 copying build/lib/xmipp3/protocols/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,516 copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,520 copying build/lib/xmipp3/protocols/protocol_volume_adjust_sub.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,523 copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,526 copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T12:34:38,529 copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,532 copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,536 creating build/bdist.linux-armv7l/wheel/xmipp3/tests 2026-07-06T12:34:38,537 copying build/lib/xmipp3/tests/test_protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,540 copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,542 copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,544 copying build/lib/xmipp3/tests/test_protocols_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,546 copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,549 copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,552 copying build/lib/xmipp3/tests/test_protocols_continuousflex.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,554 copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,559 copying build/lib/xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,561 copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,564 copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,566 copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,569 copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,573 copying build/lib/xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,576 copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,578 copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,582 copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,587 copying build/lib/xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,589 copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,592 copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,594 copying build/lib/xmipp3/tests/test_protocol_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,597 copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,599 copying build/lib/xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,602 copying build/lib/xmipp3/tests/test_protocol_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,605 copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,607 copying build/lib/xmipp3/tests/test_protocols_deepcenter_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,609 copying build/lib/xmipp3/tests/test_protocols_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,611 copying build/lib/xmipp3/tests/test_protocols_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,614 copying build/lib/xmipp3/tests/test_protocol_monodir.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,616 copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,619 copying build/lib/xmipp3/tests/test_protocols_local_defocus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,621 copying build/lib/xmipp3/tests/test_protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,624 copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,626 copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,629 copying build/lib/xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T12:34:38,632 creating build/bdist.linux-armv7l/wheel/xmipp3/viewers 2026-07-06T12:34:38,633 copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,637 copying build/lib/xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,639 copying build/lib/xmipp3/viewers/viewer_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,642 copying build/lib/xmipp3/viewers/viewer_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,645 copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,647 copying build/lib/xmipp3/viewers/viewer_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,649 copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,652 copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,655 copying build/lib/xmipp3/viewers/viewer_deep_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,657 copying build/lib/xmipp3/viewers/viewer_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,660 copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,662 copying build/lib/xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,665 copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,667 copying build/lib/xmipp3/viewers/viewer_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,669 copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,672 copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,674 copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,676 copying build/lib/xmipp3/viewers/viewer_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,678 copying build/lib/xmipp3/viewers/viewer_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,680 copying build/lib/xmipp3/viewers/viewer_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,683 copying build/lib/xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,685 copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,687 copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,689 copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,692 copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,695 copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,698 copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,700 copying build/lib/xmipp3/viewers/viewer_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,703 copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,705 copying build/lib/xmipp3/viewers/viewer_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,707 copying build/lib/xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,710 copying build/lib/xmipp3/viewers/viewer_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,712 copying build/lib/xmipp3/viewers/viewer_LL_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,715 copying build/lib/xmipp3/viewers/viewer_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,718 copying build/lib/xmipp3/viewers/viewer_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,720 copying build/lib/xmipp3/viewers/viewer_volume_subtraction.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,722 copying build/lib/xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,725 copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,727 copying build/lib/xmipp3/viewers/viewer_deepEMHancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,730 copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T12:34:38,732 copying build/lib/xmipp3/protocolsCollectInfo.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,735 copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,738 creating build/bdist.linux-armv7l/wheel/xmipp3/convert 2026-07-06T12:34:38,739 copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-07-06T12:34:38,742 copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-07-06T12:34:38,744 copying build/lib/xmipp3/convert/io_coordinates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-07-06T12:34:38,746 copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-07-06T12:34:38,749 copying build/lib/xmipp3/checkProtocolsConf.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,752 copying build/lib/xmipp3/logParser.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,754 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy 2026-07-06T12:34:38,756 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/protocols 2026-07-06T12:34:38,758 copying build/lib/xmipp3/legacy/protocols/protocol_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,761 copying build/lib/xmipp3/legacy/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,762 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,765 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,768 copying build/lib/xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,770 copying build/lib/xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,773 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,776 copying build/lib/xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,778 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,781 copying build/lib/xmipp3/legacy/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,784 copying build/lib/xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,786 copying build/lib/xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,789 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,793 copying build/lib/xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,796 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,798 copying build/lib/xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,801 copying build/lib/xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,803 copying build/lib/xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,807 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,810 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,813 copying build/lib/xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,815 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,818 copying build/lib/xmipp3/legacy/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,821 copying build/lib/xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,823 copying build/lib/xmipp3/legacy/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,826 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,830 copying build/lib/xmipp3/legacy/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,833 copying build/lib/xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,836 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T12:34:38,839 copying build/lib/xmipp3/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy 2026-07-06T12:34:38,841 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/tests 2026-07-06T12:34:38,843 copying build/lib/xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T12:34:38,845 copying build/lib/xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T12:34:38,848 copying build/lib/xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T12:34:38,850 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T12:34:38,852 copying build/lib/xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T12:34:38,855 copying build/lib/xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T12:34:38,858 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T12:34:38,860 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T12:34:38,863 copying build/lib/xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T12:34:38,865 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T12:34:38,867 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T12:34:38,870 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/viewers 2026-07-06T12:34:38,872 copying build/lib/xmipp3/legacy/viewers/viewer_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T12:34:38,874 copying build/lib/xmipp3/legacy/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T12:34:38,877 copying build/lib/xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T12:34:38,880 copying build/lib/xmipp3/legacy/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T12:34:38,883 copying build/lib/xmipp3/legacy/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T12:34:38,887 copying build/lib/xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T12:34:38,891 copying build/lib/xmipp3/version.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,893 copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,898 copying build/lib/xmipp3/xmipp_logo_devel.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,912 copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,914 copying build/lib/xmipp3/protocols.conf -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,918 copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,921 copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,923 copying build/lib/xmipp3/xmipp_logo.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T12:34:38,927 running install_egg_info 2026-07-06T12:34:38,932 Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_xmipp-29.0.0-py3.11.egg-info 2026-07-06T12:34:38,943 running install_scripts 2026-07-06T12:34:38,955 creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-29.0.0.dist-info/WHEEL 2026-07-06T12:34:38,958 creating '/tmp/pip-wheel-2ek6t0ea/.tmp-3xkwpd0e/scipion_em_xmipp-29.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-07-06T12:34:38,966 adding 'scipion_em_xmipp-29.0.0.dist-info/licenses/LICENSE' 2026-07-06T12:34:38,970 adding 'xmipp3/__init__.py' 2026-07-06T12:34:38,973 adding 'xmipp3/base.py' 2026-07-06T12:34:38,977 adding 'xmipp3/bibtex.py' 2026-07-06T12:34:38,978 adding 'xmipp3/checkProtocolsConf.py' 2026-07-06T12:34:38,980 adding 'xmipp3/constants.py' 2026-07-06T12:34:38,981 adding 'xmipp3/logParser.py' 2026-07-06T12:34:38,983 adding 'xmipp3/programs.py' 2026-07-06T12:34:38,985 adding 'xmipp3/protocols.conf' 2026-07-06T12:34:38,987 adding 'xmipp3/protocolsCollectInfo.py' 2026-07-06T12:34:38,989 adding 'xmipp3/utils.py' 2026-07-06T12:34:38,990 adding 'xmipp3/version.py' 2026-07-06T12:34:38,992 adding 'xmipp3/wizards.py' 2026-07-06T12:34:39,003 adding 'xmipp3/xmipp_logo.png' 2026-07-06T12:34:39,103 adding 'xmipp3/xmipp_logo_devel.png' 2026-07-06T12:34:39,112 adding 'xmipp3/convert/__init__.py' 2026-07-06T12:34:39,123 adding 'xmipp3/convert/convert.py' 2026-07-06T12:34:39,127 adding 'xmipp3/convert/dataimport.py' 2026-07-06T12:34:39,128 adding 'xmipp3/convert/io_coordinates.py' 2026-07-06T12:34:39,130 adding 'xmipp3/legacy/__init__.py' 2026-07-06T12:34:39,133 adding 'xmipp3/legacy/protocols/__init__.py' 2026-07-06T12:34:39,135 adding 'xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py' 2026-07-06T12:34:39,137 adding 'xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py' 2026-07-06T12:34:39,143 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr.py' 2026-07-06T12:34:39,149 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py' 2026-07-06T12:34:39,153 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py' 2026-07-06T12:34:39,156 adding 'xmipp3/legacy/protocols/protocol_classify_kmeans2d.py' 2026-07-06T12:34:39,162 adding 'xmipp3/legacy/protocols/protocol_deep_align.py' 2026-07-06T12:34:39,164 adding 'xmipp3/legacy/protocols/protocol_deep_center.py' 2026-07-06T12:34:39,167 adding 'xmipp3/legacy/protocols/protocol_deep_center_predict.py' 2026-07-06T12:34:39,170 adding 'xmipp3/legacy/protocols/protocol_deep_denoising.py' 2026-07-06T12:34:39,174 adding 'xmipp3/legacy/protocols/protocol_enrich.py' 2026-07-06T12:34:39,178 adding 'xmipp3/legacy/protocols/protocol_extract_particles_movies.py' 2026-07-06T12:34:39,180 adding 'xmipp3/legacy/protocols/protocol_kmeans_clustering.py' 2026-07-06T12:34:39,182 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py' 2026-07-06T12:34:39,184 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py' 2026-07-06T12:34:39,186 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py' 2026-07-06T12:34:39,190 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py' 2026-07-06T12:34:39,194 adding 'xmipp3/legacy/protocols/protocol_mltomo.py' 2026-07-06T12:34:39,196 adding 'xmipp3/legacy/protocols/protocol_movie_average.py' 2026-07-06T12:34:39,198 adding 'xmipp3/legacy/protocols/protocol_movie_opticalflow.py' 2026-07-06T12:34:39,200 adding 'xmipp3/legacy/protocols/protocol_particle_boxsize.py' 2026-07-06T12:34:39,205 adding 'xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py' 2026-07-06T12:34:39,207 adding 'xmipp3/legacy/protocols/protocol_rotational_spectra.py' 2026-07-06T12:34:39,209 adding 'xmipp3/legacy/protocols/protocol_screen_deeplearning.py' 2026-07-06T12:34:39,213 adding 'xmipp3/legacy/protocols/protocol_solid_angles.py' 2026-07-06T12:34:39,215 adding 'xmipp3/legacy/protocols/protocol_split_volume.py' 2026-07-06T12:34:39,219 adding 'xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py' 2026-07-06T12:34:39,221 adding 'xmipp3/legacy/protocols/protocol_subtract_projection.py' 2026-07-06T12:34:39,223 adding 'xmipp3/legacy/tests/test_protocol_deep_denoising.py' 2026-07-06T12:34:39,225 adding 'xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py' 2026-07-06T12:34:39,226 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py' 2026-07-06T12:34:39,228 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py' 2026-07-06T12:34:39,229 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py' 2026-07-06T12:34:39,231 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py' 2026-07-06T12:34:39,232 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py' 2026-07-06T12:34:39,234 adding 'xmipp3/legacy/tests/test_protocols_mixed_movies.py' 2026-07-06T12:34:39,235 adding 'xmipp3/legacy/tests/test_protocols_solid_angles.py' 2026-07-06T12:34:39,241 adding 'xmipp3/legacy/tests/test_protocols_subtract_projection.py' 2026-07-06T12:34:39,243 adding 'xmipp3/legacy/tests/test_protocols_xmipp_movies.py' 2026-07-06T12:34:39,246 adding 'xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py' 2026-07-06T12:34:39,247 adding 'xmipp3/legacy/viewers/viewer_deep_align.py' 2026-07-06T12:34:39,249 adding 'xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py' 2026-07-06T12:34:39,251 adding 'xmipp3/legacy/viewers/viewer_mltomo.py' 2026-07-06T12:34:39,252 adding 'xmipp3/legacy/viewers/viewer_solid_angles.py' 2026-07-06T12:34:39,254 adding 'xmipp3/legacy/viewers/viewer_split_volume.py' 2026-07-06T12:34:39,258 adding 'xmipp3/protocols/__init__.py' 2026-07-06T12:34:39,264 adding 'xmipp3/protocols/protocol_alignPCA_2D.py' 2026-07-06T12:34:39,268 adding 'xmipp3/protocols/protocol_align_volume.py' 2026-07-06T12:34:39,272 adding 'xmipp3/protocols/protocol_align_volume_and_particles.py' 2026-07-06T12:34:39,274 adding 'xmipp3/protocols/protocol_analyze_local_ctf.py' 2026-07-06T12:34:39,279 adding 'xmipp3/protocols/protocol_angular_graph_consistency.py' 2026-07-06T12:34:39,282 adding 'xmipp3/protocols/protocol_apply_alignment.py' 2026-07-06T12:34:39,284 adding 'xmipp3/protocols/protocol_apply_tilt_to_ctf.py' 2026-07-06T12:34:39,287 adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py' 2026-07-06T12:34:39,289 adding 'xmipp3/protocols/protocol_apply_zernike3d.py' 2026-07-06T12:34:39,292 adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py' 2026-07-06T12:34:39,294 adding 'xmipp3/protocols/protocol_break_symmetry.py' 2026-07-06T12:34:39,297 adding 'xmipp3/protocols/protocol_center_particles.py' 2026-07-06T12:34:39,302 adding 'xmipp3/protocols/protocol_cl2d.py' 2026-07-06T12:34:39,304 adding 'xmipp3/protocols/protocol_cl2d_align.py' 2026-07-06T12:34:39,307 adding 'xmipp3/protocols/protocol_cl2d_clustering.py' 2026-07-06T12:34:39,310 adding 'xmipp3/protocols/protocol_classes_2d_mapping.py' 2026-07-06T12:34:39,312 adding 'xmipp3/protocols/protocol_compare_angles.py' 2026-07-06T12:34:39,317 adding 'xmipp3/protocols/protocol_compare_reprojections.py' 2026-07-06T12:34:39,323 adding 'xmipp3/protocols/protocol_compute_likelihood.py' 2026-07-06T12:34:39,327 adding 'xmipp3/protocols/protocol_consensus_classes.py' 2026-07-06T12:34:39,330 adding 'xmipp3/protocols/protocol_consensus_local_ctf.py' 2026-07-06T12:34:39,333 adding 'xmipp3/protocols/protocol_convert_pdb.py' 2026-07-06T12:34:39,336 adding 'xmipp3/protocols/protocol_core_analysis.py' 2026-07-06T12:34:39,338 adding 'xmipp3/protocols/protocol_create_gallery.py' 2026-07-06T12:34:39,344 adding 'xmipp3/protocols/protocol_ctf_consensus.py' 2026-07-06T12:34:39,346 adding 'xmipp3/protocols/protocol_ctf_correct_phase.py' 2026-07-06T12:34:39,348 adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py' 2026-07-06T12:34:39,351 adding 'xmipp3/protocols/protocol_ctf_defocus_group.py' 2026-07-06T12:34:39,356 adding 'xmipp3/protocols/protocol_ctf_micrographs.py' 2026-07-06T12:34:39,357 adding 'xmipp3/protocols/protocol_deep_hand.py' 2026-07-06T12:34:39,363 adding 'xmipp3/protocols/protocol_deep_micrograph_screen.py' 2026-07-06T12:34:39,365 adding 'xmipp3/protocols/protocol_denoise_particles.py' 2026-07-06T12:34:39,370 adding 'xmipp3/protocols/protocol_eliminate_empty_images.py' 2026-07-06T12:34:39,372 adding 'xmipp3/protocols/protocol_extract_asymmetric_unit.py' 2026-07-06T12:34:39,378 adding 'xmipp3/protocols/protocol_extract_particles.py' 2026-07-06T12:34:39,384 adding 'xmipp3/protocols/protocol_extract_particles_pairs.py' 2026-07-06T12:34:39,388 adding 'xmipp3/protocols/protocol_flexalign.py' 2026-07-06T12:34:39,391 adding 'xmipp3/protocols/protocol_generate_reprojections.py' 2026-07-06T12:34:39,395 adding 'xmipp3/protocols/protocol_helical_parameters.py' 2026-07-06T12:34:39,398 adding 'xmipp3/protocols/protocol_kerdensom.py' 2026-07-06T12:34:39,401 adding 'xmipp3/protocols/protocol_local_ctf.py' 2026-07-06T12:34:39,404 adding 'xmipp3/protocols/protocol_mics_defocus_balancer.py' 2026-07-06T12:34:39,408 adding 'xmipp3/protocols/protocol_ml2d.py' 2026-07-06T12:34:39,414 adding 'xmipp3/protocols/protocol_movie_alignment_consensus.py' 2026-07-06T12:34:39,419 adding 'xmipp3/protocols/protocol_movie_dose_analysis.py' 2026-07-06T12:34:39,425 adding 'xmipp3/protocols/protocol_movie_gain.py' 2026-07-06T12:34:39,429 adding 'xmipp3/protocols/protocol_movie_max_shift.py' 2026-07-06T12:34:39,432 adding 'xmipp3/protocols/protocol_movie_split_frames.py' 2026-07-06T12:34:39,435 adding 'xmipp3/protocols/protocol_multiple_fscs.py' 2026-07-06T12:34:39,440 adding 'xmipp3/protocols/protocol_multireference_alignability.py' 2026-07-06T12:34:39,442 adding 'xmipp3/protocols/protocol_normalize_strain.py' 2026-07-06T12:34:39,445 adding 'xmipp3/protocols/protocol_particle_pick.py' 2026-07-06T12:34:39,448 adding 'xmipp3/protocols/protocol_particle_pick_automatic.py' 2026-07-06T12:34:39,453 adding 'xmipp3/protocols/protocol_particle_pick_consensus.py' 2026-07-06T12:34:39,455 adding 'xmipp3/protocols/protocol_particle_pick_pairs.py' 2026-07-06T12:34:39,458 adding 'xmipp3/protocols/protocol_particle_pick_remove_duplicates.py' 2026-07-06T12:34:39,460 adding 'xmipp3/protocols/protocol_phantom_create.py' 2026-07-06T12:34:39,463 adding 'xmipp3/protocols/protocol_pick_noise.py' 2026-07-06T12:34:39,467 adding 'xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py' 2026-07-06T12:34:39,471 adding 'xmipp3/protocols/protocol_preprocess_micrographs.py' 2026-07-06T12:34:39,475 adding 'xmipp3/protocols/protocol_random_conical_tilt.py' 2026-07-06T12:34:39,481 adding 'xmipp3/protocols/protocol_ransac.py' 2026-07-06T12:34:39,485 adding 'xmipp3/protocols/protocol_reconstruct_fourier.py' 2026-07-06T12:34:39,497 adding 'xmipp3/protocols/protocol_reconstruct_highres.py' 2026-07-06T12:34:39,503 adding 'xmipp3/protocols/protocol_reconstruct_significant.py' 2026-07-06T12:34:39,509 adding 'xmipp3/protocols/protocol_reconstruct_swarm.py' 2026-07-06T12:34:39,512 adding 'xmipp3/protocols/protocol_resolution3d.py' 2026-07-06T12:34:39,515 adding 'xmipp3/protocols/protocol_resolution_bfactor.py' 2026-07-06T12:34:39,518 adding 'xmipp3/protocols/protocol_resolution_deepres.py' 2026-07-06T12:34:39,522 adding 'xmipp3/protocols/protocol_resolution_directional.py' 2026-07-06T12:34:39,525 adding 'xmipp3/protocols/protocol_resolution_fso.py' 2026-07-06T12:34:39,528 adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py' 2026-07-06T12:34:39,530 adding 'xmipp3/protocols/protocol_rotate_volume.py' 2026-07-06T12:34:39,533 adding 'xmipp3/protocols/protocol_rotational_symmetry.py' 2026-07-06T12:34:39,546 adding 'xmipp3/protocols/protocol_screen_deepConsensus.py' 2026-07-06T12:34:39,551 adding 'xmipp3/protocols/protocol_screen_particles.py' 2026-07-06T12:34:39,554 adding 'xmipp3/protocols/protocol_shift_particles.py' 2026-07-06T12:34:39,556 adding 'xmipp3/protocols/protocol_shift_volume.py' 2026-07-06T12:34:39,559 adding 'xmipp3/protocols/protocol_simulate_ctf.py' 2026-07-06T12:34:39,562 adding 'xmipp3/protocols/protocol_structure_map.py' 2026-07-06T12:34:39,566 adding 'xmipp3/protocols/protocol_structure_map_zernike3d.py' 2026-07-06T12:34:39,570 adding 'xmipp3/protocols/protocol_subtract_projection.py' 2026-07-06T12:34:39,575 adding 'xmipp3/protocols/protocol_tilt_analysis.py' 2026-07-06T12:34:39,579 adding 'xmipp3/protocols/protocol_trigger_data.py' 2026-07-06T12:34:39,584 adding 'xmipp3/protocols/protocol_validate_fscq.py' 2026-07-06T12:34:39,588 adding 'xmipp3/protocols/protocol_validate_nontilt.py' 2026-07-06T12:34:39,593 adding 'xmipp3/protocols/protocol_validate_overfitting.py' 2026-07-06T12:34:39,597 adding 'xmipp3/protocols/protocol_volume_adjust_sub.py' 2026-07-06T12:34:39,599 adding 'xmipp3/protocols/protocol_volume_consensus.py' 2026-07-06T12:34:39,603 adding 'xmipp3/protocols/protocol_volume_deform_zernike3d.py' 2026-07-06T12:34:39,605 adding 'xmipp3/protocols/protocol_volume_local_adjust.py' 2026-07-06T12:34:39,609 adding 'xmipp3/protocols/protocol_volume_local_sharpening.py' 2026-07-06T12:34:39,611 adding 'xmipp3/protocols/protocol_volume_strain.py' 2026-07-06T12:34:39,613 adding 'xmipp3/protocols/protocol_write_testC.py' 2026-07-06T12:34:39,615 adding 'xmipp3/protocols/protocol_write_testP.py' 2026-07-06T12:34:39,617 adding 'xmipp3/protocols/protocol_preprocess/__init__.py' 2026-07-06T12:34:39,618 adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py' 2026-07-06T12:34:39,622 adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py' 2026-07-06T12:34:39,624 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py' 2026-07-06T12:34:39,628 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py' 2026-07-06T12:34:39,634 adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py' 2026-07-06T12:34:39,638 adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py' 2026-07-06T12:34:39,643 adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py' 2026-07-06T12:34:39,646 adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py' 2026-07-06T12:34:39,649 adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py' 2026-07-06T12:34:39,656 adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py' 2026-07-06T12:34:39,659 adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py' 2026-07-06T12:34:39,660 adding 'xmipp3/protocols/protocol_projmatch/__init__.py' 2026-07-06T12:34:39,664 adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py' 2026-07-06T12:34:39,666 adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py' 2026-07-06T12:34:39,670 adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py' 2026-07-06T12:34:39,673 adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py' 2026-07-06T12:34:39,675 adding 'xmipp3/tests/__init__.py' 2026-07-06T12:34:39,679 adding 'xmipp3/tests/test_convert_xmipp.py' 2026-07-06T12:34:39,681 adding 'xmipp3/tests/test_protocol_angular_graph_consistency.py' 2026-07-06T12:34:39,682 adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py' 2026-07-06T12:34:39,684 adding 'xmipp3/tests/test_protocol_compare_angles.py' 2026-07-06T12:34:39,685 adding 'xmipp3/tests/test_protocol_consensus_classes3D.py' 2026-07-06T12:34:39,687 adding 'xmipp3/tests/test_protocol_ctf_consensus.py' 2026-07-06T12:34:39,690 adding 'xmipp3/tests/test_protocol_extract_asymmetric_unit.py' 2026-07-06T12:34:39,692 adding 'xmipp3/tests/test_protocol_likelihood.py' 2026-07-06T12:34:39,693 adding 'xmipp3/tests/test_protocol_monodir.py' 2026-07-06T12:34:39,694 adding 'xmipp3/tests/test_protocol_multiple_fsc.py' 2026-07-06T12:34:39,696 adding 'xmipp3/tests/test_protocol_multireference_alignability.py' 2026-07-06T12:34:39,697 adding 'xmipp3/tests/test_protocol_reconstruct_fourier.py' 2026-07-06T12:34:39,699 adding 'xmipp3/tests/test_protocol_screen_deepConsensus.py' 2026-07-06T12:34:39,700 adding 'xmipp3/tests/test_protocol_simulate_ctf.py' 2026-07-06T12:34:39,702 adding 'xmipp3/tests/test_protocol_split_frames.py' 2026-07-06T12:34:39,703 adding 'xmipp3/tests/test_protocol_validate_fscq.py' 2026-07-06T12:34:39,704 adding 'xmipp3/tests/test_protocol_validate_overfitting.py' 2026-07-06T12:34:39,706 adding 'xmipp3/tests/test_protocols_add_noise.py' 2026-07-06T12:34:39,707 adding 'xmipp3/tests/test_protocols_continuousflex.py' 2026-07-06T12:34:39,709 adding 'xmipp3/tests/test_protocols_deepVolPostprocessing.py' 2026-07-06T12:34:39,710 adding 'xmipp3/tests/test_protocols_deepcenter_predict.py' 2026-07-06T12:34:39,712 adding 'xmipp3/tests/test_protocols_deepres.py' 2026-07-06T12:34:39,713 adding 'xmipp3/tests/test_protocols_fso.py' 2026-07-06T12:34:39,715 adding 'xmipp3/tests/test_protocols_highres.py' 2026-07-06T12:34:39,716 adding 'xmipp3/tests/test_protocols_local_defocus.py' 2026-07-06T12:34:39,718 adding 'xmipp3/tests/test_protocols_localdeblur.py' 2026-07-06T12:34:39,719 adding 'xmipp3/tests/test_protocols_monores.py' 2026-07-06T12:34:39,721 adding 'xmipp3/tests/test_protocols_realignment_classes.py' 2026-07-06T12:34:39,727 adding 'xmipp3/tests/test_protocols_xmipp_2d.py' 2026-07-06T12:34:39,736 adding 'xmipp3/tests/test_protocols_xmipp_3d.py' 2026-07-06T12:34:39,741 adding 'xmipp3/tests/test_protocols_xmipp_mics.py' 2026-07-06T12:34:39,743 adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py' 2026-07-06T12:34:39,746 adding 'xmipp3/tests/test_protocols_xmipp_movies.py' 2026-07-06T12:34:39,748 adding 'xmipp3/tests/test_protocols_zernike3d.py' 2026-07-06T12:34:39,750 adding 'xmipp3/viewers/__init__.py' 2026-07-06T12:34:39,752 adding 'xmipp3/viewers/plotter.py' 2026-07-06T12:34:39,754 adding 'xmipp3/viewers/viewer.py' 2026-07-06T12:34:39,756 adding 'xmipp3/viewers/viewer_LL_matrix.py' 2026-07-06T12:34:39,757 adding 'xmipp3/viewers/viewer_analyze_local_ctf.py' 2026-07-06T12:34:39,759 adding 'xmipp3/viewers/viewer_apply_tilt_to_ctf.py' 2026-07-06T12:34:39,760 adding 'xmipp3/viewers/viewer_cl2d.py' 2026-07-06T12:34:39,762 adding 'xmipp3/viewers/viewer_cl2d_clustering.py' 2026-07-06T12:34:39,764 adding 'xmipp3/viewers/viewer_consensus_classes.py' 2026-07-06T12:34:39,765 adding 'xmipp3/viewers/viewer_ctf_consensus.py' 2026-07-06T12:34:39,767 adding 'xmipp3/viewers/viewer_deepEMHancer.py' 2026-07-06T12:34:39,768 adding 'xmipp3/viewers/viewer_deep_consensus.py' 2026-07-06T12:34:39,770 adding 'xmipp3/viewers/viewer_deep_micrograph_cleaner.py' 2026-07-06T12:34:39,772 adding 'xmipp3/viewers/viewer_dose_analysis.py' 2026-07-06T12:34:39,773 adding 'xmipp3/viewers/viewer_eliminate_empty_images.py' 2026-07-06T12:34:39,775 adding 'xmipp3/viewers/viewer_extract_asymmetric_unit.py' 2026-07-06T12:34:39,776 adding 'xmipp3/viewers/viewer_local_sharpening.py' 2026-07-06T12:34:39,778 adding 'xmipp3/viewers/viewer_ml2d.py' 2026-07-06T12:34:39,779 adding 'xmipp3/viewers/viewer_movie_alignment.py' 2026-07-06T12:34:39,780 adding 'xmipp3/viewers/viewer_normalize_strain.py' 2026-07-06T12:34:39,782 adding 'xmipp3/viewers/viewer_pdb_deform_zernike3d.py' 2026-07-06T12:34:39,785 adding 'xmipp3/viewers/viewer_projmatch.py' 2026-07-06T12:34:39,787 adding 'xmipp3/viewers/viewer_ransac.py' 2026-07-06T12:34:39,789 adding 'xmipp3/viewers/viewer_reconstruct_highres.py' 2026-07-06T12:34:39,791 adding 'xmipp3/viewers/viewer_resolution3d.py' 2026-07-06T12:34:39,792 adding 'xmipp3/viewers/viewer_resolution_bfactor.py' 2026-07-06T12:34:39,794 adding 'xmipp3/viewers/viewer_resolution_deepres.py' 2026-07-06T12:34:39,797 adding 'xmipp3/viewers/viewer_resolution_directional.py' 2026-07-06T12:34:39,799 adding 'xmipp3/viewers/viewer_resolution_fso.py' 2026-07-06T12:34:39,801 adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py' 2026-07-06T12:34:39,804 adding 'xmipp3/viewers/viewer_structure_map.py' 2026-07-06T12:34:39,805 adding 'xmipp3/viewers/viewer_subtract_projection.py' 2026-07-06T12:34:39,807 adding 'xmipp3/viewers/viewer_swarm.py' 2026-07-06T12:34:39,809 adding 'xmipp3/viewers/viewer_validate_fscq.py' 2026-07-06T12:34:39,810 adding 'xmipp3/viewers/viewer_validate_nontilt.py' 2026-07-06T12:34:39,812 adding 'xmipp3/viewers/viewer_validate_overfitting.py' 2026-07-06T12:34:39,813 adding 'xmipp3/viewers/viewer_volume_consensus.py' 2026-07-06T12:34:39,815 adding 'xmipp3/viewers/viewer_volume_deform_zernike3d.py' 2026-07-06T12:34:39,816 adding 'xmipp3/viewers/viewer_volume_strain.py' 2026-07-06T12:34:39,817 adding 'xmipp3/viewers/viewer_volume_subtraction.py' 2026-07-06T12:34:39,818 adding 'scipion_em_xmipp-29.0.0.dist-info/METADATA' 2026-07-06T12:34:39,819 adding 'scipion_em_xmipp-29.0.0.dist-info/WHEEL' 2026-07-06T12:34:39,820 adding 'scipion_em_xmipp-29.0.0.dist-info/entry_points.txt' 2026-07-06T12:34:39,821 adding 'scipion_em_xmipp-29.0.0.dist-info/top_level.txt' 2026-07-06T12:34:39,825 adding 'scipion_em_xmipp-29.0.0.dist-info/RECORD' 2026-07-06T12:34:39,857 removing build/bdist.linux-armv7l/wheel 2026-07-06T12:34:40,009 Building wheel for scipion-em-xmipp (pyproject.toml): finished with status 'done' 2026-07-06T12:34:40,068 Created wheel for scipion-em-xmipp: filename=scipion_em_xmipp-29.0.0-py3-none-any.whl size=2137479 sha256=213db409cdfcc01467a4259aa919fc7f7ef004011e01e66cacdaa330d05fe6e8 2026-07-06T12:34:40,069 Stored in directory: /tmp/pip-ephem-wheel-cache-gt8d94zc/wheels/b3/db/09/fcca442f9ca380637c496cf2bfd9cd3fd28113dbb25347dd29 2026-07-06T12:34:40,090 Successfully built scipion-em-xmipp 2026-07-06T12:34:40,138 Removed build tracker: '/tmp/pip-build-tracker-ncxsjnks'