2026-07-06T12:58:41,652 Created temporary directory: /tmp/pip-ephem-wheel-cache-u2v4fq0z
2026-07-06T12:58:41,654 Created temporary directory: /tmp/pip-build-tracker-hs3rfm0g
2026-07-06T12:58:41,655 Initialized build tracking at /tmp/pip-build-tracker-hs3rfm0g
2026-07-06T12:58:41,655 Created build tracker: /tmp/pip-build-tracker-hs3rfm0g
2026-07-06T12:58:41,656 Entered build tracker: /tmp/pip-build-tracker-hs3rfm0g
2026-07-06T12:58:41,657 Created temporary directory: /tmp/pip-wheel-ync0jk9o
2026-07-06T12:58:41,660 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-07-06T12:58:41,662 Created temporary directory: /tmp/pip-ephem-wheel-cache-yggatckp
2026-07-06T12:58:41,684 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-07-06T12:58:41,687 2 location(s) to search for versions of phyloroot:
2026-07-06T12:58:41,687 * https://pypi.org/simple/phyloroot/
2026-07-06T12:58:41,687 * https://www.piwheels.org/simple/phyloroot/
2026-07-06T12:58:41,688 Fetching project page and analyzing links: https://pypi.org/simple/phyloroot/
2026-07-06T12:58:41,688 Getting page https://pypi.org/simple/phyloroot/
2026-07-06T12:58:41,690 Found index url https://pypi.org/simple
2026-07-06T12:58:42,016 Fetched page https://pypi.org/simple/phyloroot/ as application/vnd.pypi.simple.v1+json
2026-07-06T12:58:42,019   Skipping link: No binaries permitted for phyloroot: https://files.pythonhosted.org/packages/a7/3e/318670b3509a81c926f021f1eb8713362611f028d1fe11130437f0cd3d9b/phyloroot-0.0.1-py3-none-any.whl (from https://pypi.org/simple/phyloroot/) (requires-python:>=3.7)
2026-07-06T12:58:42,020   Found link https://files.pythonhosted.org/packages/50/56/6e7c23e9bf26b3907aae3d998d94209f49b37a8874a64df009141cd4f209/phyloroot-0.0.1.tar.gz (from https://pypi.org/simple/phyloroot/) (requires-python:>=3.7), version: 0.0.1
2026-07-06T12:58:42,021   Skipping link: No binaries permitted for phyloroot: https://files.pythonhosted.org/packages/0a/1e/a7c83bb16a972f76461501a275caa584d8b42e2709a9a042dff743e58a65/phyloroot-0.0.2-py3-none-any.whl (from https://pypi.org/simple/phyloroot/) (requires-python:>=3.7)
2026-07-06T12:58:42,022   Found link https://files.pythonhosted.org/packages/56/cb/13ba44cf079c4e9a465286b6d84d41af74e1079b61a2bfb987b74c16e585/phyloroot-0.0.2.tar.gz (from https://pypi.org/simple/phyloroot/) (requires-python:>=3.7), version: 0.0.2
2026-07-06T12:58:42,023   Skipping link: No binaries permitted for phyloroot: https://files.pythonhosted.org/packages/a5/71/b2f90a9df31ea6fd8e41e2da2befc0bb355521bc14ad972db3c8c28a3d13/phyloroot-0.1.0-py3-none-any.whl (from https://pypi.org/simple/phyloroot/) (requires-python:>=3.7)
2026-07-06T12:58:42,024   Found link https://files.pythonhosted.org/packages/f9/41/4e93008cb70539934cad6350cf3d2682681fc8c144aded0b5467353423b5/phyloroot-0.1.0.tar.gz (from https://pypi.org/simple/phyloroot/) (requires-python:>=3.7), version: 0.1.0
2026-07-06T12:58:42,024   Skipping link: No binaries permitted for phyloroot: https://files.pythonhosted.org/packages/71/3d/83e4ccc49e95d52f398e186f26fbb05fa1e3169c5768b841b8c24d02533d/phyloroot-0.2.0-py3-none-any.whl (from https://pypi.org/simple/phyloroot/) (requires-python:>=3.7)
2026-07-06T12:58:42,025   Found link https://files.pythonhosted.org/packages/f0/59/fb12f0860d3d10c5ac3538fb1703a2c48e9efef68b16a9607ba74d5091dc/phyloroot-0.2.0.tar.gz (from https://pypi.org/simple/phyloroot/) (requires-python:>=3.7), version: 0.2.0
2026-07-06T12:58:42,026 Fetching project page and analyzing links: https://www.piwheels.org/simple/phyloroot/
2026-07-06T12:58:42,027 Getting page https://www.piwheels.org/simple/phyloroot/
2026-07-06T12:58:42,028 Found index url https://www.piwheels.org/simple
2026-07-06T12:58:42,323 Fetched page https://www.piwheels.org/simple/phyloroot/ as text/html
2026-07-06T12:58:42,325   Skipping link: No binaries permitted for phyloroot: https://archive1.piwheels.org/simple/phyloroot/phyloroot-0.1.0-py3-none-any.whl#sha256=2d093fe62da06bb3102b2c3bb39ce875efb0dfc6d7188221e3c47219ec7fcb01 (from https://www.piwheels.org/simple/phyloroot/) (requires-python:>=3.7)
2026-07-06T12:58:42,326   Skipping link: No binaries permitted for phyloroot: https://archive1.piwheels.org/simple/phyloroot/phyloroot-0.0.2-py3-none-any.whl#sha256=21edd3a2a1ac6b41f5fe57de6296531119c3b3565c5f944b901893d47d6d5a0a (from https://www.piwheels.org/simple/phyloroot/) (requires-python:>=3.7)
2026-07-06T12:58:42,327   Skipping link: No binaries permitted for phyloroot: https://archive1.piwheels.org/simple/phyloroot/phyloroot-0.0.1-py3-none-any.whl#sha256=4ea276b813094d8f48e11761905b237d601fdcf4bcb382e5e1d8c6f54d7ed61d (from https://www.piwheels.org/simple/phyloroot/) (requires-python:>=3.7)
2026-07-06T12:58:42,327 Skipping link: not a file: https://www.piwheels.org/simple/phyloroot/
2026-07-06T12:58:42,328 Skipping link: not a file: https://pypi.org/simple/phyloroot/
2026-07-06T12:58:42,348 Given no hashes to check 1 links for project 'phyloroot': discarding no candidates
2026-07-06T12:58:42,367 Collecting phyloroot==0.2.0
2026-07-06T12:58:42,369   Created temporary directory: /tmp/pip-unpack-fxnb95im
2026-07-06T12:58:42,618   Downloading phyloroot-0.2.0.tar.gz (10 kB)
2026-07-06T12:58:42,668   Added phyloroot==0.2.0 from https://files.pythonhosted.org/packages/f0/59/fb12f0860d3d10c5ac3538fb1703a2c48e9efef68b16a9607ba74d5091dc/phyloroot-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-hs3rfm0g'
2026-07-06T12:58:42,672   Created temporary directory: /tmp/pip-build-env-l52mtdyi
2026-07-06T12:58:42,676   Installing build dependencies: started
2026-07-06T12:58:42,678   Running command pip subprocess to install build dependencies
2026-07-06T12:58:43,821   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-07-06T12:58:44,291   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-07-06T12:58:44,314   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-07-06T12:58:46,326   Collecting setuptools>=61.0
2026-07-06T12:58:46,346     Using cached setuptools-83.0.0-py3-none-any.whl (1.0 MB)
2026-07-06T12:58:49,252   Installing collected packages: setuptools
2026-07-06T12:58:52,298   Successfully installed setuptools-83.0.0
2026-07-06T12:58:52,566   Installing build dependencies: finished with status 'done'
2026-07-06T12:58:52,573   Getting requirements to build wheel: started
2026-07-06T12:58:52,574   Running command Getting requirements to build wheel
2026-07-06T12:58:53,244   /tmp/pip-build-env-l52mtdyi/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-07-06T12:58:53,244   !!

2026-07-06T12:58:53,245           ********************************************************************************
2026-07-06T12:58:53,245           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-07-06T12:58:53,247           License :: OSI Approved :: MIT License

2026-07-06T12:58:53,248           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-07-06T12:58:53,249           ********************************************************************************

2026-07-06T12:58:53,250   !!
2026-07-06T12:58:53,250     dist._finalize_license_expression()
2026-07-06T12:58:53,251   /tmp/pip-build-env-l52mtdyi/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-07-06T12:58:53,252   !!

2026-07-06T12:58:53,253           ********************************************************************************
2026-07-06T12:58:53,253           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-07-06T12:58:53,254           License :: OSI Approved :: MIT License

2026-07-06T12:58:53,255           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-07-06T12:58:53,256           ********************************************************************************

2026-07-06T12:58:53,256   !!
2026-07-06T12:58:53,257     self._finalize_license_expression()
2026-07-06T12:58:53,259   running egg_info
2026-07-06T12:58:53,265   writing src/phyloroot.egg-info/PKG-INFO
2026-07-06T12:58:53,268   writing dependency_links to src/phyloroot.egg-info/dependency_links.txt
2026-07-06T12:58:53,270   writing entry points to src/phyloroot.egg-info/entry_points.txt
2026-07-06T12:58:53,271   writing requirements to src/phyloroot.egg-info/requires.txt
2026-07-06T12:58:53,272   writing top-level names to src/phyloroot.egg-info/top_level.txt
2026-07-06T12:58:53,291   reading manifest file 'src/phyloroot.egg-info/SOURCES.txt'
2026-07-06T12:58:53,293   adding license file 'LICENCE'
2026-07-06T12:58:53,296   writing manifest file 'src/phyloroot.egg-info/SOURCES.txt'
2026-07-06T12:58:53,393   Getting requirements to build wheel: finished with status 'done'
2026-07-06T12:58:53,397   Created temporary directory: /tmp/pip-modern-metadata-4w_h5491
2026-07-06T12:58:53,399   Preparing metadata (pyproject.toml): started
2026-07-06T12:58:53,400   Running command Preparing metadata (pyproject.toml)
2026-07-06T12:58:54,043   /tmp/pip-build-env-l52mtdyi/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-07-06T12:58:54,044   !!

2026-07-06T12:58:54,045           ********************************************************************************
2026-07-06T12:58:54,045           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-07-06T12:58:54,046           License :: OSI Approved :: MIT License

2026-07-06T12:58:54,048           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-07-06T12:58:54,048           ********************************************************************************

2026-07-06T12:58:54,049   !!
2026-07-06T12:58:54,050     dist._finalize_license_expression()
2026-07-06T12:58:54,050   /tmp/pip-build-env-l52mtdyi/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-07-06T12:58:54,051   !!

2026-07-06T12:58:54,052           ********************************************************************************
2026-07-06T12:58:54,053           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-07-06T12:58:54,054           License :: OSI Approved :: MIT License

2026-07-06T12:58:54,055           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-07-06T12:58:54,056           ********************************************************************************

2026-07-06T12:58:54,057   !!
2026-07-06T12:58:54,057     self._finalize_license_expression()
2026-07-06T12:58:54,058   running dist_info
2026-07-06T12:58:54,068   creating /tmp/pip-modern-metadata-4w_h5491/phyloroot.egg-info
2026-07-06T12:58:54,069   writing /tmp/pip-modern-metadata-4w_h5491/phyloroot.egg-info/PKG-INFO
2026-07-06T12:58:54,072   writing dependency_links to /tmp/pip-modern-metadata-4w_h5491/phyloroot.egg-info/dependency_links.txt
2026-07-06T12:58:54,074   writing entry points to /tmp/pip-modern-metadata-4w_h5491/phyloroot.egg-info/entry_points.txt
2026-07-06T12:58:54,075   writing requirements to /tmp/pip-modern-metadata-4w_h5491/phyloroot.egg-info/requires.txt
2026-07-06T12:58:54,076   writing top-level names to /tmp/pip-modern-metadata-4w_h5491/phyloroot.egg-info/top_level.txt
2026-07-06T12:58:54,078   writing manifest file '/tmp/pip-modern-metadata-4w_h5491/phyloroot.egg-info/SOURCES.txt'
2026-07-06T12:58:54,095   reading manifest file '/tmp/pip-modern-metadata-4w_h5491/phyloroot.egg-info/SOURCES.txt'
2026-07-06T12:58:54,096   adding license file 'LICENCE'
2026-07-06T12:58:54,099   writing manifest file '/tmp/pip-modern-metadata-4w_h5491/phyloroot.egg-info/SOURCES.txt'
2026-07-06T12:58:54,100   creating '/tmp/pip-modern-metadata-4w_h5491/phyloroot-0.2.0.dist-info'
2026-07-06T12:58:54,223   Preparing metadata (pyproject.toml): finished with status 'done'
2026-07-06T12:58:54,228   Source in /tmp/pip-wheel-ync0jk9o/phyloroot_364dbef35151449ab21adfc747239b7d has version 0.2.0, which satisfies requirement phyloroot==0.2.0 from https://files.pythonhosted.org/packages/f0/59/fb12f0860d3d10c5ac3538fb1703a2c48e9efef68b16a9607ba74d5091dc/phyloroot-0.2.0.tar.gz
2026-07-06T12:58:54,229   Removed phyloroot==0.2.0 from https://files.pythonhosted.org/packages/f0/59/fb12f0860d3d10c5ac3538fb1703a2c48e9efef68b16a9607ba74d5091dc/phyloroot-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-hs3rfm0g'
2026-07-06T12:58:54,234 Created temporary directory: /tmp/pip-unpack-bf9h0rtk
2026-07-06T12:58:54,234 Building wheels for collected packages: phyloroot
2026-07-06T12:58:54,239   Created temporary directory: /tmp/pip-wheel-r89k86u_
2026-07-06T12:58:54,240   Destination directory: /tmp/pip-wheel-r89k86u_
2026-07-06T12:58:54,242   Building wheel for phyloroot (pyproject.toml): started
2026-07-06T12:58:54,244   Running command Building wheel for phyloroot (pyproject.toml)
2026-07-06T12:58:54,860   /tmp/pip-build-env-l52mtdyi/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-07-06T12:58:54,860   !!

2026-07-06T12:58:54,861           ********************************************************************************
2026-07-06T12:58:54,862           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-07-06T12:58:54,863           License :: OSI Approved :: MIT License

2026-07-06T12:58:54,864           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-07-06T12:58:54,865           ********************************************************************************

2026-07-06T12:58:54,866   !!
2026-07-06T12:58:54,866     dist._finalize_license_expression()
2026-07-06T12:58:54,867   /tmp/pip-build-env-l52mtdyi/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-07-06T12:58:54,868   !!

2026-07-06T12:58:54,869           ********************************************************************************
2026-07-06T12:58:54,870           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-07-06T12:58:54,871           License :: OSI Approved :: MIT License

2026-07-06T12:58:54,872           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-07-06T12:58:54,873           ********************************************************************************

2026-07-06T12:58:54,874   !!
2026-07-06T12:58:54,875     self._finalize_license_expression()
2026-07-06T12:58:54,875   running bdist_wheel
2026-07-06T12:58:54,887   running build
2026-07-06T12:58:54,888   running build_py
2026-07-06T12:58:54,893   creating build/lib/phyloroot
2026-07-06T12:58:54,896   copying src/phyloroot/rooting.py -> build/lib/phyloroot
2026-07-06T12:58:54,899   copying src/phyloroot/main_cli.py -> build/lib/phyloroot
2026-07-06T12:58:54,901   copying src/phyloroot/__init__.py -> build/lib/phyloroot
2026-07-06T12:58:54,903   running egg_info
2026-07-06T12:58:54,913   writing src/phyloroot.egg-info/PKG-INFO
2026-07-06T12:58:54,916   writing dependency_links to src/phyloroot.egg-info/dependency_links.txt
2026-07-06T12:58:54,917   writing entry points to src/phyloroot.egg-info/entry_points.txt
2026-07-06T12:58:54,919   writing requirements to src/phyloroot.egg-info/requires.txt
2026-07-06T12:58:54,920   writing top-level names to src/phyloroot.egg-info/top_level.txt
2026-07-06T12:58:54,928   reading manifest file 'src/phyloroot.egg-info/SOURCES.txt'
2026-07-06T12:58:54,931   adding license file 'LICENCE'
2026-07-06T12:58:54,933   writing manifest file 'src/phyloroot.egg-info/SOURCES.txt'
2026-07-06T12:58:54,945   installing to build/bdist.linux-armv7l/wheel
2026-07-06T12:58:54,945   running install
2026-07-06T12:58:54,967   running install_lib
2026-07-06T12:58:54,973   creating build/bdist.linux-armv7l/wheel
2026-07-06T12:58:54,975   creating build/bdist.linux-armv7l/wheel/phyloroot
2026-07-06T12:58:54,977   copying build/lib/phyloroot/rooting.py -> build/bdist.linux-armv7l/wheel/./phyloroot
2026-07-06T12:58:54,979   copying build/lib/phyloroot/main_cli.py -> build/bdist.linux-armv7l/wheel/./phyloroot
2026-07-06T12:58:54,981   copying build/lib/phyloroot/__init__.py -> build/bdist.linux-armv7l/wheel/./phyloroot
2026-07-06T12:58:54,983   running install_egg_info
2026-07-06T12:58:54,988   Copying src/phyloroot.egg-info to build/bdist.linux-armv7l/wheel/./phyloroot-0.2.0-py3.11.egg-info
2026-07-06T12:58:54,998   running install_scripts
2026-07-06T12:58:55,009   creating build/bdist.linux-armv7l/wheel/phyloroot-0.2.0.dist-info/WHEEL
2026-07-06T12:58:55,012   creating '/tmp/pip-wheel-r89k86u_/.tmp-sug_kg00/phyloroot-0.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-07-06T12:58:55,014   adding 'phyloroot/__init__.py'
2026-07-06T12:58:55,015   adding 'phyloroot/main_cli.py'
2026-07-06T12:58:55,019   adding 'phyloroot/rooting.py'
2026-07-06T12:58:55,022   adding 'phyloroot-0.2.0.dist-info/licenses/LICENCE'
2026-07-06T12:58:55,023   adding 'phyloroot-0.2.0.dist-info/METADATA'
2026-07-06T12:58:55,024   adding 'phyloroot-0.2.0.dist-info/WHEEL'
2026-07-06T12:58:55,025   adding 'phyloroot-0.2.0.dist-info/entry_points.txt'
2026-07-06T12:58:55,026   adding 'phyloroot-0.2.0.dist-info/top_level.txt'
2026-07-06T12:58:55,027   adding 'phyloroot-0.2.0.dist-info/RECORD'
2026-07-06T12:58:55,028   removing build/bdist.linux-armv7l/wheel
2026-07-06T12:58:55,129   Building wheel for phyloroot (pyproject.toml): finished with status 'done'
2026-07-06T12:58:55,134   Created wheel for phyloroot: filename=phyloroot-0.2.0-py3-none-any.whl size=9928 sha256=6c0fbb38ddaf6fbfc3b0e796c222a30587d11e2b8f0611a78d8a403e1b6410ce
2026-07-06T12:58:55,135   Stored in directory: /tmp/pip-ephem-wheel-cache-yggatckp/wheels/cc/1a/90/7c395b8ede801917512402a4b17b940ff6d31c7f1d0cf22568
2026-07-06T12:58:55,145 Successfully built phyloroot
2026-07-06T12:58:55,148 Removed build tracker: '/tmp/pip-build-tracker-hs3rfm0g'