2026-07-06T13:01:43,962 Created temporary directory: /tmp/pip-ephem-wheel-cache-0a0wfk8h 2026-07-06T13:01:43,963 Created temporary directory: /tmp/pip-build-tracker-pzrn98pi 2026-07-06T13:01:43,964 Initialized build tracking at /tmp/pip-build-tracker-pzrn98pi 2026-07-06T13:01:43,965 Created build tracker: /tmp/pip-build-tracker-pzrn98pi 2026-07-06T13:01:43,965 Entered build tracker: /tmp/pip-build-tracker-pzrn98pi 2026-07-06T13:01:43,966 Created temporary directory: /tmp/pip-wheel-eu69670o 2026-07-06T13:01:43,969 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-06T13:01:43,971 Created temporary directory: /tmp/pip-ephem-wheel-cache-akrxwumm 2026-07-06T13:01:43,993 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-06T13:01:43,997 2 location(s) to search for versions of pyxmipp3: 2026-07-06T13:01:43,997 * https://pypi.org/simple/pyxmipp3/ 2026-07-06T13:01:43,997 * https://www.piwheels.org/simple/pyxmipp3/ 2026-07-06T13:01:43,998 Fetching project page and analyzing links: https://pypi.org/simple/pyxmipp3/ 2026-07-06T13:01:43,999 Getting page https://pypi.org/simple/pyxmipp3/ 2026-07-06T13:01:44,000 Found index url https://pypi.org/simple 2026-07-06T13:01:44,385 Fetched page https://pypi.org/simple/pyxmipp3/ as application/vnd.pypi.simple.v1+json 2026-07-06T13:01:44,399 Skipping link: No binaries permitted for pyxmipp3: 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https://files.pythonhosted.org/packages/dc/2a/0e8df69b5df9c5711e9dd374b7590b1994551188cd768d07372905bab6c5/pyxmipp3-0.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-07-06T13:01:44,444 Found link https://files.pythonhosted.org/packages/bc/4c/a296bee6f7f922474322af2dcb919001e335ef7196f9ce123ff8f38d71ba/pyxmipp3-0.3.0.tar.gz (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7), version: 0.3.0 2026-07-06T13:01:44,444 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/62/ae/3ff28c3ecbbf6bb1ae357f0647e08f8b7d241509316f2c21c20335278c24/pyxmipp3-0.4.0-cp310-cp310-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-07-06T13:01:44,445 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/37/db/6980b7d9ff65602c982d3d9c0069878fe7bee9b7c896127f1fa1f0cd24c0/pyxmipp3-0.4.0-cp311-cp311-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-07-06T13:01:44,445 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/97/2f/a48ac91cd1253cbf36c5ce296ec6eefe0ad21f73a88a3743da0f7c7f866c/pyxmipp3-0.4.0-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-07-06T13:01:44,446 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/47/bb/eabdfa20ea2fcdc37e3ecd479aa6258beaa2e22fcc1331f4a2e9cd5fd255/pyxmipp3-0.4.0-cp313-cp313-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-07-06T13:01:44,447 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/ac/35/f07dfd853de5a8b4cea0e046b5d43cd428cefcda6d0d24adc6d02a8b8d3d/pyxmipp3-0.4.0-cp314-cp314-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-07-06T13:01:44,447 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/44/4c/dce406673a1181c8ac9f96619911461964aefa9849a908b45dd38a3460c6/pyxmipp3-0.4.0-cp38-cp38-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-07-06T13:01:44,448 Skipping link: No binaries permitted for pyxmipp3: https://files.pythonhosted.org/packages/f7/56/f079e06079f80f90daf54e9bee61bee7f0d6164e39bcecf710dd28402f80/pyxmipp3-0.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7) 2026-07-06T13:01:44,449 Found link https://files.pythonhosted.org/packages/e3/a1/d498b0ee893dc64821f3b285e73f89c57b3e58a5958b74f11b283fcb871a/pyxmipp3-0.4.0.tar.gz (from https://pypi.org/simple/pyxmipp3/) (requires-python:>=3.7), version: 0.4.0 2026-07-06T13:01:44,450 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyxmipp3/ 2026-07-06T13:01:44,450 Getting page https://www.piwheels.org/simple/pyxmipp3/ 2026-07-06T13:01:44,452 Found index url https://www.piwheels.org/simple 2026-07-06T13:01:44,751 Fetched page https://www.piwheels.org/simple/pyxmipp3/ as text/html 2026-07-06T13:01:44,752 Skipping link: not a file: https://www.piwheels.org/simple/pyxmipp3/ 2026-07-06T13:01:44,753 Skipping link: not a file: https://pypi.org/simple/pyxmipp3/ 2026-07-06T13:01:44,774 Given no hashes to check 1 links for project 'pyxmipp3': discarding no candidates 2026-07-06T13:01:44,792 Collecting pyxmipp3==0.4.0 2026-07-06T13:01:44,795 Created temporary directory: /tmp/pip-unpack-r4c76kbh 2026-07-06T13:01:45,041 Downloading pyxmipp3-0.4.0.tar.gz (66 kB) 2026-07-06T13:01:45,185 Added pyxmipp3==0.4.0 from https://files.pythonhosted.org/packages/e3/a1/d498b0ee893dc64821f3b285e73f89c57b3e58a5958b74f11b283fcb871a/pyxmipp3-0.4.0.tar.gz to build tracker '/tmp/pip-build-tracker-pzrn98pi' 2026-07-06T13:01:45,196 Created temporary directory: /tmp/pip-build-env-gr67uj7n 2026-07-06T13:01:45,201 Installing build dependencies: started 2026-07-06T13:01:45,202 Running command pip subprocess to install build dependencies 2026-07-06T13:01:46,327 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-07-06T13:01:46,793 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-06T13:01:46,817 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-06T13:01:46,818 Ignoring numpy: markers 'python_version < "3.9"' don't match your environment 2026-07-06T13:01:47,577 Collecting scikit-build-core==0.11.* 2026-07-06T13:01:47,578 Obtaining dependency information for scikit-build-core==0.11.* from https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.11.6-py3-none-any.whl.metadata 2026-07-06T13:01:47,599 Using cached https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.11.6-py3-none-any.whl.metadata (18 kB) 2026-07-06T13:01:47,613 Discarding https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.11.6-py3-none-any.whl#sha256=eeb430b2ffd6104e14b58f3b41dd78cee0bd8d18ac8d4ab70a82c90bedb24c9a (from https://www.piwheels.org/simple/scikit-build-core/) (requires-python:>=3.8): Requested scikit-build-core==0.11.* from https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-0.11.6-py3-none-any.whl#sha256=eeb430b2ffd6104e14b58f3b41dd78cee0bd8d18ac8d4ab70a82c90bedb24c9a has inconsistent Name: expected 'scikit-build-core', but metadata has 'scikit_build_core' 2026-07-06T13:01:47,640 Using cached scikit_build_core-0.11.6-py3-none-any.whl (185 kB) 2026-07-06T13:01:48,736 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-07-06T13:01:48,744 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-07-06T13:01:48,751 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): 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packaging>=23.2 2026-07-06T13:01:49,955 Obtaining dependency information for packaging>=23.2 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-07-06T13:01:49,970 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-07-06T13:01:50,092 Collecting pathspec>=0.10.1 2026-07-06T13:01:50,093 Obtaining dependency information for pathspec>=0.10.1 from https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl.metadata 2026-07-06T13:01:50,107 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl.metadata (14 kB) 2026-07-06T13:01:50,605 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-07-06T13:01:50,724 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-06T13:01:50,741 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl (57 kB) 2026-07-06T13:01:51,191 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-07-06T13:01:51,404 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-06T13:01:51,429 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl (57 kB) 2026-07-06T13:01:54,156 Installing collected packages: pathspec, packaging, numpy, scikit-build-core 2026-07-06T13:02:03,531 Creating /tmp/pip-build-env-gr67uj7n/overlay/local/bin 2026-07-06T13:02:03,533 changing mode of /tmp/pip-build-env-gr67uj7n/overlay/local/bin/f2py to 755 2026-07-06T13:02:03,536 changing mode of /tmp/pip-build-env-gr67uj7n/overlay/local/bin/numpy-config to 755 2026-07-06T13:02:04,184 Successfully installed numpy-2.4.6 packaging-26.2 pathspec-1.1.1 scikit-build-core-0.11.6 2026-07-06T13:02:04,524 Installing build dependencies: finished with status 'done' 2026-07-06T13:02:04,531 Getting requirements to build wheel: started 2026-07-06T13:02:04,533 Running command Getting requirements to build wheel 2026-07-06T13:02:05,034 WARNING: Use build.verbose instead of cmake.verbose for scikit-build-core >= 0.10 2026-07-06T13:02:05,133 Getting requirements to build wheel: finished with status 'done' 2026-07-06T13:02:05,137 Created temporary directory: /tmp/pip-modern-metadata-5g91qqjd 2026-07-06T13:02:05,139 Preparing metadata (pyproject.toml): started 2026-07-06T13:02:05,140 Running command Preparing metadata (pyproject.toml) 2026-07-06T13:02:05,782 WARNING: Use build.verbose instead of cmake.verbose for scikit-build-core >= 0.10 2026-07-06T13:02:05,830 *** scikit-build-core 0.11.6 using CMake 3.25.1 (metadata_wheel) 2026-07-06T13:02:05,938 Preparing metadata (pyproject.toml): finished with status 'done' 2026-07-06T13:02:05,943 Source in /tmp/pip-wheel-eu69670o/pyxmipp3_0a58fb2f78b6472ca489a6d3d5e8d45a has version 0.4.0, which satisfies requirement pyxmipp3==0.4.0 from https://files.pythonhosted.org/packages/e3/a1/d498b0ee893dc64821f3b285e73f89c57b3e58a5958b74f11b283fcb871a/pyxmipp3-0.4.0.tar.gz 2026-07-06T13:02:05,944 Removed pyxmipp3==0.4.0 from https://files.pythonhosted.org/packages/e3/a1/d498b0ee893dc64821f3b285e73f89c57b3e58a5958b74f11b283fcb871a/pyxmipp3-0.4.0.tar.gz from build tracker '/tmp/pip-build-tracker-pzrn98pi' 2026-07-06T13:02:05,949 Created temporary directory: /tmp/pip-unpack-iclk42tm 2026-07-06T13:02:05,949 Building wheels for collected packages: pyxmipp3 2026-07-06T13:02:05,954 Created temporary directory: /tmp/pip-wheel-gm4hv11x 2026-07-06T13:02:05,954 Destination directory: /tmp/pip-wheel-gm4hv11x 2026-07-06T13:02:05,956 Building wheel for pyxmipp3 (pyproject.toml): started 2026-07-06T13:02:05,957 Running command Building wheel for pyxmipp3 (pyproject.toml) 2026-07-06T13:02:06,576 WARNING: Use build.verbose instead of cmake.verbose for scikit-build-core >= 0.10 2026-07-06T13:02:06,621 *** scikit-build-core 0.11.6 using CMake 3.25.1 (wheel) 2026-07-06T13:02:06,647 *** Configuring CMake... 2026-07-06T13:02:06,975 loading initial cache file /tmp/tmprioxvnfi/build/CMakeInit.txt 2026-07-06T13:02:07,247 -- The C compiler identification is GNU 12.2.0 2026-07-06T13:02:07,547 -- The CXX compiler identification is GNU 12.2.0 2026-07-06T13:02:07,598 -- Detecting C compiler ABI info 2026-07-06T13:02:07,854 -- Detecting C compiler ABI info - done 2026-07-06T13:02:07,891 -- Check for working C compiler: /usr/bin/arm-linux-gnueabihf-gcc - skipped 2026-07-06T13:02:07,893 -- Detecting C compile features 2026-07-06T13:02:07,895 -- Detecting C compile features - done 2026-07-06T13:02:07,914 -- Detecting CXX compiler ABI info 2026-07-06T13:02:08,232 -- Detecting CXX compiler ABI info - done 2026-07-06T13:02:08,270 -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabihf-g++ - skipped 2026-07-06T13:02:08,272 -- Detecting CXX compile features 2026-07-06T13:02:08,274 -- Detecting CXX compile features - done 2026-07-06T13:02:08,313 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD 2026-07-06T13:02:08,610 -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success 2026-07-06T13:02:08,615 -- Found Threads: TRUE 2026-07-06T13:02:09,724 -- Found Python: /usr/bin/python3 (found version "3.11.2") found components: Interpreter Development.Module NumPy 2026-07-06T13:02:17,646 -- Building tiff version 4.7.1 2026-07-06T13:02:17,664 -- Performing Test C_FLAG_Wall 2026-07-06T13:02:17,960 -- Performing Test C_FLAG_Wall - Success 2026-07-06T13:02:17,964 -- Performing Test C_FLAG_Winline 2026-07-06T13:02:18,220 -- Performing Test C_FLAG_Winline - Success 2026-07-06T13:02:18,224 -- Performing Test C_FLAG_Wformat_security 2026-07-06T13:02:18,476 -- Performing Test C_FLAG_Wformat_security - Success 2026-07-06T13:02:18,480 -- Performing Test C_FLAG_Wpointer_arith 2026-07-06T13:02:18,796 -- Performing Test C_FLAG_Wpointer_arith - Success 2026-07-06T13:02:18,800 -- Performing Test C_FLAG_Wdisabled_optimization 2026-07-06T13:02:19,051 -- Performing Test C_FLAG_Wdisabled_optimization - Success 2026-07-06T13:02:19,055 -- Performing Test C_FLAG_Wno_unknown_pragmas 2026-07-06T13:02:19,308 -- Performing Test C_FLAG_Wno_unknown_pragmas - Success 2026-07-06T13:02:19,312 -- Performing Test C_FLAG_fstrict_aliasing 2026-07-06T13:02:19,623 -- Performing Test C_FLAG_fstrict_aliasing - Success 2026-07-06T13:02:19,628 -- Performing Test HAVE_LD_VERSION_SCRIPT 2026-07-06T13:02:19,892 -- Performing Test HAVE_LD_VERSION_SCRIPT - Success 2026-07-06T13:02:19,906 -- Looking for assert.h 2026-07-06T13:02:20,176 -- Looking for assert.h - found 2026-07-06T13:02:20,177 -- Looking for fcntl.h 2026-07-06T13:02:20,486 -- Looking for fcntl.h - found 2026-07-06T13:02:20,487 -- Looking for io.h 2026-07-06T13:02:20,630 -- Looking for io.h - not found 2026-07-06T13:02:20,631 -- Looking for strings.h 2026-07-06T13:02:20,902 -- Looking for strings.h - found 2026-07-06T13:02:20,903 -- Looking for sys/time.h 2026-07-06T13:02:21,200 -- Looking for sys/time.h - found 2026-07-06T13:02:21,201 -- Looking for sys/types.h 2026-07-06T13:02:21,486 -- Looking for sys/types.h - found 2026-07-06T13:02:21,488 -- Looking for unistd.h 2026-07-06T13:02:21,784 -- Looking for unistd.h - found 2026-07-06T13:02:21,788 -- Looking for getopt 2026-07-06T13:02:22,112 -- Looking for getopt - found 2026-07-06T13:02:22,113 -- Looking for optarg 2026-07-06T13:02:22,388 -- Looking for optarg - found 2026-07-06T13:02:22,390 -- Looking for mmap 2026-07-06T13:02:22,659 -- Looking for mmap - found 2026-07-06T13:02:22,661 -- Looking for setmode 2026-07-06T13:02:22,845 -- Looking for setmode - not found 2026-07-06T13:02:22,862 -- Looking for stdint.h 2026-07-06T13:02:23,129 -- Looking for stdint.h - found 2026-07-06T13:02:23,130 -- Looking for stddef.h 2026-07-06T13:02:23,389 -- Looking for stddef.h - found 2026-07-06T13:02:23,390 -- Check size of size_t 2026-07-06T13:02:23,705 -- Check size of size_t - done 2026-07-06T13:02:23,768 -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.13") 2026-07-06T13:02:23,791 -- Found Deflate: /usr/lib/arm-linux-gnueabihf/libdeflate.so (found version "1.14") 2026-07-06T13:02:24,131 -- Found JPEG: /usr/lib/arm-linux-gnueabihf/libjpeg.so (found version "62") 2026-07-06T13:02:24,135 -- Performing Test HAVE_JPEGTURBO_DUAL_MODE_8_12 2026-07-06T13:02:24,444 -- Performing Test HAVE_JPEGTURBO_DUAL_MODE_8_12 - Failed 2026-07-06T13:02:24,469 -- Found JBIG: /usr/lib/arm-linux-gnueabihf/libjbig.so (found version "2.1") 2026-07-06T13:02:24,471 -- Looking for jbg_newlen 2026-07-06T13:02:24,742 -- Looking for jbg_newlen - found 2026-07-06T13:02:24,761 -- Found LERC: /usr/lib/arm-linux-gnueabihf/libLerc.so (found version "4.0.0") 2026-07-06T13:02:24,777 -- Looking for lzma_auto_decoder in /usr/lib/arm-linux-gnueabihf/liblzma.so 2026-07-06T13:02:25,045 -- Looking for lzma_auto_decoder in /usr/lib/arm-linux-gnueabihf/liblzma.so - found 2026-07-06T13:02:25,046 -- Looking for lzma_easy_encoder in /usr/lib/arm-linux-gnueabihf/liblzma.so 2026-07-06T13:02:25,350 -- Looking for lzma_easy_encoder in /usr/lib/arm-linux-gnueabihf/liblzma.so - found 2026-07-06T13:02:25,351 -- Looking for lzma_lzma_preset in /usr/lib/arm-linux-gnueabihf/liblzma.so 2026-07-06T13:02:25,620 -- Looking for lzma_lzma_preset in /usr/lib/arm-linux-gnueabihf/liblzma.so - found 2026-07-06T13:02:25,625 -- Found liblzma: /usr/lib/arm-linux-gnueabihf/liblzma.so (found version "5.4.1") 2026-07-06T13:02:25,655 -- Found ZSTD: /usr/lib/arm-linux-gnueabihf/libzstd.so (found version "1.5.4") 2026-07-06T13:02:25,656 -- Looking for ZSTD_decompressStream 2026-07-06T13:02:25,940 -- Looking for ZSTD_decompressStream - found 2026-07-06T13:02:25,956 -- Found WebP: /usr/lib/arm-linux-gnueabihf/libwebp.so 2026-07-06T13:02:25,993 -- Found OpenGL: /usr/lib/arm-linux-gnueabihf/libOpenGL.so found components: OpenGL 2026-07-06T13:02:26,357 -- Could NOT find GLUT (missing: GLUT_glut_LIBRARY GLUT_INCLUDE_DIR) 2026-07-06T13:02:26,358 -- Looking for GL/gl.h 2026-07-06T13:02:26,771 -- Looking for GL/gl.h - found 2026-07-06T13:02:26,772 -- Looking for GL/glu.h 2026-07-06T13:02:27,207 -- Looking for GL/glu.h - found 2026-07-06T13:02:27,209 -- Looking for GL/glut.h 2026-07-06T13:02:27,349 -- Looking for GL/glut.h - not found 2026-07-06T13:02:27,351 -- Looking for GLUT/glut.h 2026-07-06T13:02:27,493 -- Looking for GLUT/glut.h - not found 2026-07-06T13:02:27,494 -- Looking for OpenGL/gl.h 2026-07-06T13:02:27,638 -- Looking for OpenGL/gl.h - not found 2026-07-06T13:02:27,639 -- Looking for OpenGL/glu.h 2026-07-06T13:02:27,782 -- Looking for OpenGL/glu.h - not found 2026-07-06T13:02:27,790 -- Looking for pow 2026-07-06T13:02:28,095 -- Looking for pow - not found 2026-07-06T13:02:28,099 -- Looking for pow 2026-07-06T13:02:28,426 -- Looking for pow - found 2026-07-06T13:02:28,433 -- Found CMath: TRUE 2026-07-06T13:02:28,527 -- 2026-07-06T13:02:28,528 -- Libtiff is now configured for Linux-6.1.21-v7l+ 2026-07-06T13:02:28,529 -- 2026-07-06T13:02:28,530 -- Libtiff build version: 4.7.1 2026-07-06T13:02:28,531 -- Libtiff library version: 6.2.0 2026-07-06T13:02:28,532 -- Libtiff release date: 20250911 2026-07-06T13:02:28,532 -- 2026-07-06T13:02:28,532 -- Installation directory: /tmp/tmprioxvnfi/wheel/platlib 2026-07-06T13:02:28,533 -- Documentation directory: share/doc/pyxmipp3 2026-07-06T13:02:28,533 -- C compiler: /usr/bin/arm-linux-gnueabihf-gcc 2026-07-06T13:02:28,534 -- C++ compiler: /usr/bin/arm-linux-gnueabihf-g++ 2026-07-06T13:02:28,534 -- Build shared libraries: OFF 2026-07-06T13:02:28,535 -- Build tools: OFF 2026-07-06T13:02:28,535 -- Build tests: ON 2026-07-06T13:02:28,536 -- Build contrib: ON 2026-07-06T13:02:28,536 -- Build docs: OFF 2026-07-06T13:02:28,537 -- Build deprecated features: OFF 2026-07-06T13:02:28,537 -- Enable linker symbol versioning: TRUE 2026-07-06T13:02:28,538 -- Support Microsoft Document Imaging: ON 2026-07-06T13:02:28,539 -- Use win32 IO: OFF 2026-07-06T13:02:28,539 -- 2026-07-06T13:02:28,540 -- Support for internal codecs: 2026-07-06T13:02:28,540 -- CCITT Group 3 & 4 algorithms: ON 2026-07-06T13:02:28,541 -- Macintosh PackBits algorithm: ON 2026-07-06T13:02:28,542 -- LZW algorithm: ON 2026-07-06T13:02:28,542 -- ThunderScan 4-bit RLE algorithm: ON 2026-07-06T13:02:28,543 -- NeXT 2-bit RLE algorithm: ON 2026-07-06T13:02:28,544 -- LogLuv high dynamic range encoding: ON 2026-07-06T13:02:28,544 -- 2026-07-06T13:02:28,545 -- Support for external codecs: 2026-07-06T13:02:28,546 -- ZLIB support: Requested:ON Availability:TRUE Support:TRUE 2026-07-06T13:02:28,547 -- libdeflate support: Requested:ON Availability:TRUE Support:TRUE 2026-07-06T13:02:28,548 -- Pixar log-format algorithm: Requested:ON Availability:TRUE Support:TRUE 2026-07-06T13:02:28,548 -- JPEG support: Requested:ON Availability:TRUE Support:TRUE 2026-07-06T13:02:28,549 -- Old JPEG support: Requested:ON Availability:TRUE Support:TRUE 2026-07-06T13:02:28,550 -- JPEG 8/12 bit dual mode: Requested:OFF Availability:FALSE Support:FALSE 2026-07-06T13:02:28,551 -- ISO JBIG support: Requested:ON Availability:TRUE Support:TRUE 2026-07-06T13:02:28,552 -- LERC support: Requested:ON Availability:TRUE Support:TRUE 2026-07-06T13:02:28,553 -- LZMA2 support: Requested:ON Availability:TRUE Support:TRUE 2026-07-06T13:02:28,554 -- ZSTD support: Requested:ON Availability:TRUE Support:TRUE 2026-07-06T13:02:28,554 -- WEBP support: Requested:ON Availability:TRUE Support:TRUE 2026-07-06T13:02:28,555 -- 2026-07-06T13:02:28,556 -- C++ support: ON (requested) TRUE (availability) 2026-07-06T13:02:28,557 -- 2026-07-06T13:02:28,596 -- OpenGL support: Requested:OFF Availability:FALSE Support:FALSE 2026-07-06T13:02:28,596 -- 2026-07-06T13:02:37,676 -- Configuring done 2026-07-06T13:02:38,297 -- Generating done 2026-07-06T13:02:38,496 -- Build files have been written to: /tmp/tmprioxvnfi/build 2026-07-06T13:02:38,628 *** Building project with Ninja... 2026-07-06T13:02:38,868 [1/308] Creating directories for 'libjpeg_external' 2026-07-06T13:02:38,884 [2/308] Creating directories for 'hdf5_external' 2026-07-06T13:02:38,901 [3/308] Creating directories for 'fftw3_float_external' 2026-07-06T13:02:38,914 [4/308] Creating directories for 'fftw3_double_external' 2026-07-06T13:02:42,307 [5/308] Performing download step (download, verify and extract) for 'libjpeg_external' 2026-07-06T13:02:42,431 [6/308] No update step for 'libjpeg_external' 2026-07-06T13:02:42,589 [7/308] No patch step for 'libjpeg_external' 2026-07-06T13:02:46,831 [8/308] Performing download step (download, verify and extract) for 'fftw3_float_external' 2026-07-06T13:02:46,933 [9/308] Performing download step (download, verify and extract) for 'fftw3_double_external' 2026-07-06T13:02:47,111 [10/308] No update step for 'fftw3_float_external' 2026-07-06T13:02:47,220 [11/308] No update step for 'fftw3_double_external' 2026-07-06T13:02:47,326 [12/308] No patch step for 'fftw3_float_external' 2026-07-06T13:02:47,441 [13/308] No patch step for 'fftw3_double_external' 2026-07-06T13:02:51,109 [14/308] Building CXX object CMakeFiles/libsvm.dir/_deps/libsvm-src/svm.cpp.o 2026-07-06T13:02:51,523 [15/308] Linking CXX static library liblibsvm.a 2026-07-06T13:02:52,254 [16/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_aux.c.o 2026-07-06T13:02:52,888 [17/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_close.c.o 2026-07-06T13:02:53,216 [18/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_codec.c.o 2026-07-06T13:02:54,475 [19/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_color.c.o 2026-07-06T13:02:54,999 [20/308] Performing configure step for 'libjpeg_external' 2026-07-06T13:02:55,004 [21/308] Performing download step (download, verify and extract) for 'hdf5_external' 2026-07-06T13:02:55,240 [22/308] No update step for 'hdf5_external' 2026-07-06T13:02:55,244 [23/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_compress.c.o 2026-07-06T13:02:55,461 [24/308] No patch step for 'hdf5_external' 2026-07-06T13:03:00,675 [25/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_dir.c.o 2026-07-06T13:03:03,162 [26/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_dirinfo.c.o 2026-07-06T13:03:28,518 [27/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_dirread.c.o 2026-07-06T13:03:42,761 [28/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_dirwrite.c.o 2026-07-06T13:03:43,534 [29/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_dumpmode.c.o 2026-07-06T13:03:44,405 [30/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_error.c.o 2026-07-06T13:03:45,249 [31/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_extension.c.o 2026-07-06T13:03:53,327 [32/308] Performing configure step for 'fftw3_float_external' 2026-07-06T13:03:53,337 [33/308] Performing configure step for 'fftw3_double_external' 2026-07-06T13:04:09,221 [34/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_fax3.c.o 2026-07-06T13:04:10,913 [35/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_fax3sm.c.o 2026-07-06T13:04:12,024 [36/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_flush.c.o 2026-07-06T13:04:12,573 [37/308] Performing build step for 'libjpeg_external' 2026-07-06T13:04:13,404 [38/308] Performing install step for 'libjpeg_external' 2026-07-06T13:04:13,406 -- Install configuration: "Release" 2026-07-06T13:04:13,407 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/lib/libjpeg.a 2026-07-06T13:04:13,408 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/bin/cjpeg 2026-07-06T13:04:13,408 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/bin/djpeg 2026-07-06T13:04:13,409 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/bin/jpegtran 2026-07-06T13:04:13,410 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/bin/rdjpgcom 2026-07-06T13:04:13,411 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/bin/wrjpgcom 2026-07-06T13:04:13,412 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/README.ijg 2026-07-06T13:04:13,413 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/README.md 2026-07-06T13:04:13,414 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/example.c 2026-07-06T13:04:13,415 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/tjcomp.c 2026-07-06T13:04:13,415 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/tjdecomp.c 2026-07-06T13:04:13,416 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/tjtran.c 2026-07-06T13:04:13,417 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/libjpeg.txt 2026-07-06T13:04:13,418 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/structure.txt 2026-07-06T13:04:13,418 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/usage.txt 2026-07-06T13:04:13,426 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/wizard.txt 2026-07-06T13:04:13,436 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/doc/libjpeg-turbo/LICENSE.md 2026-07-06T13:04:13,437 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/man/man1/cjpeg.1 2026-07-06T13:04:13,446 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/man/man1/djpeg.1 2026-07-06T13:04:13,448 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/man/man1/jpegtran.1 2026-07-06T13:04:13,448 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/man/man1/rdjpgcom.1 2026-07-06T13:04:13,450 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/share/man/man1/wrjpgcom.1 2026-07-06T13:04:13,453 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/lib/pkgconfig/libjpeg.pc 2026-07-06T13:04:13,455 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/lib/cmake/libjpeg-turbo/libjpeg-turboConfig.cmake 2026-07-06T13:04:13,456 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/lib/cmake/libjpeg-turbo/libjpeg-turboConfigVersion.cmake 2026-07-06T13:04:13,457 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/lib/cmake/libjpeg-turbo/libjpeg-turboTargets.cmake 2026-07-06T13:04:13,459 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/lib/cmake/libjpeg-turbo/libjpeg-turboTargets-release.cmake 2026-07-06T13:04:13,460 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/include/jconfig.h 2026-07-06T13:04:13,462 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/include/jerror.h 2026-07-06T13:04:13,466 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/include/jmorecfg.h 2026-07-06T13:04:13,467 -- Installing: /tmp/tmprioxvnfi/build/external/libjpeg-turbo/include/jpeglib.h 2026-07-06T13:04:14,023 [39/308] Completed 'libjpeg_external' 2026-07-06T13:04:15,687 [40/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_hash_set.c.o 2026-07-06T13:04:16,945 [41/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_jbig.c.o 2026-07-06T13:04:27,804 [42/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_jpeg.c.o 2026-07-06T13:04:28,345 [43/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_jpeg_12.c.o 2026-07-06T13:04:35,641 [44/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_getimage.c.o 2026-07-06T13:04:35,838 [45/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_lerc.c.o 2026-07-06T13:04:38,409 [46/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_lzma.c.o 2026-07-06T13:04:43,829 [47/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_lzw.c.o 2026-07-06T13:04:45,479 [48/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_next.c.o 2026-07-06T13:04:46,080 [49/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_luv.c.o 2026-07-06T13:04:49,941 [50/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_open.c.o 2026-07-06T13:04:51,973 [51/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_packbits.c.o 2026-07-06T13:04:59,214 [52/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_ojpeg.c.o 2026-07-06T13:05:04,738 [53/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_pixarlog.c.o 2026-07-06T13:05:07,360 [54/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_predict.c.o 2026-07-06T13:05:09,400 [55/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_print.c.o 2026-07-06T13:05:11,568 [56/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_strip.c.o 2026-07-06T13:05:13,334 [57/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_read.c.o 2026-07-06T13:05:13,620 [58/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_swab.c.o 2026-07-06T13:05:15,292 [59/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_thunder.c.o 2026-07-06T13:05:15,689 [60/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_tile.c.o 2026-07-06T13:05:15,955 [61/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_version.c.o 2026-07-06T13:05:16,811 [62/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_warning.c.o 2026-07-06T13:05:19,177 [63/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_webp.c.o 2026-07-06T13:05:21,331 [64/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_write.c.o 2026-07-06T13:05:22,091 [65/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_zip.c.o 2026-07-06T13:05:23,229 [66/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_zstd.c.o 2026-07-06T13:05:23,940 [67/308] Building C object _deps/libtiff-build/libtiff/CMakeFiles/tiff.dir/tif_unix.c.o 2026-07-06T13:05:25,783 [68/308] Linking C static library _deps/libtiff-build/libtiff/libtiff.a 2026-07-06T13:05:28,531 [69/308] Building C object _deps/libtiff-build/test/CMakeFiles/test_signed_tags.dir/test_signed_tags.c.o 2026-07-06T13:05:30,240 [70/308] Linking CXX executable _deps/libtiff-build/test/test_signed_tags 2026-07-06T13:05:31,493 [71/308] Building C object _deps/libtiff-build/test/CMakeFiles/ascii_tag.dir/ascii_tag.c.o 2026-07-06T13:05:32,817 [72/308] Building CXX object _deps/libtiff-build/libtiff/CMakeFiles/tiffxx.dir/tif_stream.cxx.o 2026-07-06T13:05:33,324 [73/308] Linking CXX executable _deps/libtiff-build/test/ascii_tag 2026-07-06T13:05:33,893 [74/308] Linking CXX static library _deps/libtiff-build/libtiff/libtiffxx.a 2026-07-06T13:05:34,379 [75/308] Building C object _deps/libtiff-build/test/CMakeFiles/long_tag.dir/long_tag.c.o 2026-07-06T13:05:34,626 [76/308] Building C object _deps/libtiff-build/test/CMakeFiles/long_tag.dir/check_tag.c.o 2026-07-06T13:05:35,567 [77/308] Building C object _deps/libtiff-build/test/CMakeFiles/short_tag.dir/short_tag.c.o 2026-07-06T13:05:36,229 [78/308] Linking CXX executable _deps/libtiff-build/test/long_tag 2026-07-06T13:05:36,370 [79/308] Building C object _deps/libtiff-build/test/CMakeFiles/short_tag.dir/check_tag.c.o 2026-07-06T13:05:37,248 [80/308] Building C object _deps/libtiff-build/test/CMakeFiles/strip_rw.dir/strip_rw.c.o 2026-07-06T13:05:38,073 [81/308] Linking CXX executable _deps/libtiff-build/test/short_tag 2026-07-06T13:05:38,694 [82/308] Building C object _deps/libtiff-build/test/CMakeFiles/strip_rw.dir/strip.c.o 2026-07-06T13:05:38,830 [83/308] Building C object _deps/libtiff-build/test/CMakeFiles/strip_rw.dir/test_arrays.c.o 2026-07-06T13:05:40,622 [84/308] Linking CXX executable _deps/libtiff-build/test/strip_rw 2026-07-06T13:05:41,031 [85/308] Building C object _deps/libtiff-build/test/CMakeFiles/rewrite.dir/rewrite_tag.c.o 2026-07-06T13:05:42,496 [86/308] Linking CXX executable _deps/libtiff-build/test/rewrite 2026-07-06T13:05:42,536 [87/308] Building C object _deps/libtiff-build/test/CMakeFiles/raw_decode.dir/raw_decode.c.o 2026-07-06T13:05:43,999 [88/308] Linking CXX executable _deps/libtiff-build/test/raw_decode 2026-07-06T13:05:44,041 [89/308] Building C object _deps/libtiff-build/test/CMakeFiles/custom_dir.dir/custom_dir.c.o 2026-07-06T13:05:45,789 [90/308] Linking CXX executable _deps/libtiff-build/test/custom_dir 2026-07-06T13:05:48,411 [91/308] Building C object _deps/libtiff-build/test/CMakeFiles/rational_precision2double.dir/rational_precision2double.c.o 2026-07-06T13:05:50,051 [92/308] Linking CXX executable _deps/libtiff-build/test/rational_precision2double 2026-07-06T13:05:52,347 [93/308] Building C object _deps/libtiff-build/test/CMakeFiles/test_transferfunction_write_read.dir/test_transferfunction_write_read.c.o 2026-07-06T13:05:53,942 [94/308] Linking CXX executable _deps/libtiff-build/test/test_transferfunction_write_read 2026-07-06T13:05:54,620 [95/308] Building C object _deps/libtiff-build/test/CMakeFiles/test_write_read_tags.dir/test_write_read_tags.c.o 2026-07-06T13:05:56,142 [96/308] Linking CXX executable _deps/libtiff-build/test/test_write_read_tags 2026-07-06T13:05:57,720 [97/308] Building C object _deps/libtiff-build/test/CMakeFiles/defer_strile_loading.dir/defer_strile_loading.c.o 2026-07-06T13:05:59,101 [98/308] Linking CXX executable _deps/libtiff-build/test/defer_strile_loading 2026-07-06T13:06:00,519 [99/308] Building C object _deps/libtiff-build/test/CMakeFiles/defer_strile_writing.dir/defer_strile_writing.c.o 2026-07-06T13:06:02,005 [100/308] Building C object _deps/libtiff-build/test/CMakeFiles/custom_dir_EXIF_231.dir/custom_dir_EXIF_231.c.o 2026-07-06T13:06:02,047 [101/308] Linking CXX executable _deps/libtiff-build/test/defer_strile_writing 2026-07-06T13:06:03,149 [102/308] Linking CXX executable _deps/libtiff-build/test/custom_dir_EXIF_231 2026-07-06T13:06:03,370 [103/308] Performing configure step for 'hdf5_external' 2026-07-06T13:06:14,749 [104/308] Building C object _deps/libtiff-build/test/CMakeFiles/test_directory.dir/test_directory.c.o 2026-07-06T13:06:16,861 [105/308] Linking CXX executable _deps/libtiff-build/test/test_directory 2026-07-06T13:06:17,757 [106/308] Building C object _deps/libtiff-build/test/CMakeFiles/testtypes.dir/testtypes.c.o 2026-07-06T13:06:18,890 [107/308] Linking CXX executable _deps/libtiff-build/test/testtypes 2026-07-06T13:06:19,492 [108/308] Building C object _deps/libtiff-build/test/CMakeFiles/test_IFD_enlargement.dir/test_IFD_enlargement.c.o 2026-07-06T13:06:21,594 [109/308] Linking CXX executable _deps/libtiff-build/test/test_IFD_enlargement 2026-07-06T13:06:22,519 [110/308] Building C object _deps/libtiff-build/test/CMakeFiles/test_open_options.dir/test_open_options.c.o 2026-07-06T13:06:22,851 [111/308] Building C object _deps/libtiff-build/test/CMakeFiles/test_append_to_strip.dir/test_append_to_strip.c.o 2026-07-06T13:06:24,702 [112/308] Linking CXX executable _deps/libtiff-build/test/test_open_options 2026-07-06T13:06:25,204 [113/308] Linking CXX executable _deps/libtiff-build/test/test_append_to_strip 2026-07-06T13:06:27,219 [114/308] Building C object _deps/libtiff-build/test/CMakeFiles/test_ifd_loop_detection.dir/test_ifd_loop_detection.c.o 2026-07-06T13:06:29,441 [115/308] Linking CXX executable _deps/libtiff-build/test/test_ifd_loop_detection 2026-07-06T13:06:30,904 [116/308] Building C object _deps/libtiff-build/contrib/addtiffo/CMakeFiles/addtiffo.dir/addtiffo.c.o 2026-07-06T13:06:33,939 [117/308] Building C object _deps/libtiff-build/test/CMakeFiles/test_RGBAImage.dir/test_RGBAImage.c.o 2026-07-06T13:06:36,321 [118/308] Linking CXX executable _deps/libtiff-build/test/test_RGBAImage 2026-07-06T13:06:38,601 [119/308] Building C object _deps/libtiff-build/contrib/addtiffo/CMakeFiles/addtiffo.dir/tif_overview.c.o 2026-07-06T13:06:38,909 [120/308] Building C object _deps/libtiff-build/contrib/addtiffo/CMakeFiles/addtiffo.dir/tif_ovrcache.c.o 2026-07-06T13:06:39,736 [121/308] Building C object _deps/libtiff-build/contrib/dbs/CMakeFiles/tiff-bi.dir/tiff-bi.c.o 2026-07-06T13:06:41,096 [122/308] Linking CXX executable _deps/libtiff-build/contrib/addtiffo/addtiffo 2026-07-06T13:06:41,902 [123/308] Linking CXX executable _deps/libtiff-build/contrib/dbs/tiff-bi 2026-07-06T13:06:42,979 [124/308] Building C object _deps/libtiff-build/contrib/dbs/CMakeFiles/tiff-grayscale.dir/tiff-grayscale.c.o 2026-07-06T13:06:44,552 [125/308] Building C object _deps/libtiff-build/contrib/dbs/CMakeFiles/tiff-palette.dir/tiff-palette.c.o 2026-07-06T13:06:45,280 [126/308] Linking CXX executable _deps/libtiff-build/contrib/dbs/tiff-grayscale 2026-07-06T13:06:46,816 [127/308] Linking CXX executable _deps/libtiff-build/contrib/dbs/tiff-palette 2026-07-06T13:06:48,149 [128/308] Building C object _deps/libtiff-build/contrib/dbs/CMakeFiles/tiff-rgb.dir/tiff-rgb.c.o 2026-07-06T13:06:50,312 [129/308] Linking CXX executable _deps/libtiff-build/contrib/dbs/tiff-rgb 2026-07-06T13:06:51,049 [130/308] Building C object _deps/libtiff-build/contrib/iptcutil/CMakeFiles/iptcutil.dir/iptcutil.c.o 2026-07-06T13:06:52,036 [131/308] Linking CXX executable _deps/libtiff-build/contrib/iptcutil/iptcutil 2026-07-06T13:07:20,176 [132/308] Performing build step for 'fftw3_float_external' 2026-07-06T13:07:20,596 [133/308] Performing install step for 'fftw3_float_external' 2026-07-06T13:07:20,597 -- Install configuration: "Release" 2026-07-06T13:07:20,597 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/libfftw3f.a 2026-07-06T13:07:20,598 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/libfftw3f_threads.a 2026-07-06T13:07:20,599 -- Up-to-date: /tmp/tmprioxvnfi/build/external/fftw3/lib/libfftw3f.a 2026-07-06T13:07:20,600 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/include/fftw3.h 2026-07-06T13:07:20,601 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/include/fftw3.f 2026-07-06T13:07:20,602 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/include/fftw3l.f03 2026-07-06T13:07:20,603 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/include/fftw3q.f03 2026-07-06T13:07:20,604 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/include/fftw3.f03 2026-07-06T13:07:20,604 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/pkgconfig/fftw3f.pc 2026-07-06T13:07:20,605 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/cmake/fftw3f/FFTW3fConfig.cmake 2026-07-06T13:07:20,607 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/cmake/fftw3f/FFTW3fConfigVersion.cmake 2026-07-06T13:07:20,607 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/cmake/fftw3f/FFTW3LibraryDepends.cmake 2026-07-06T13:07:20,608 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/cmake/fftw3f/FFTW3LibraryDepends-release.cmake 2026-07-06T13:07:20,973 [134/308] Completed 'fftw3_float_external' 2026-07-06T13:07:34,857 [135/308] Performing build step for 'fftw3_double_external' 2026-07-06T13:07:35,216 [136/308] Performing install step for 'fftw3_double_external' 2026-07-06T13:07:35,217 -- Install configuration: "Release" 2026-07-06T13:07:35,218 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/libfftw3.a 2026-07-06T13:07:35,219 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/libfftw3_threads.a 2026-07-06T13:07:35,220 -- Up-to-date: /tmp/tmprioxvnfi/build/external/fftw3/lib/libfftw3.a 2026-07-06T13:07:35,221 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/include/fftw3.h 2026-07-06T13:07:35,222 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/include/fftw3.f 2026-07-06T13:07:35,222 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/include/fftw3l.f03 2026-07-06T13:07:35,224 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/include/fftw3q.f03 2026-07-06T13:07:35,225 -- Up-to-date: /tmp/tmprioxvnfi/build/external/fftw3/include/fftw3.f03 2026-07-06T13:07:35,226 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/pkgconfig/fftw3.pc 2026-07-06T13:07:35,227 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/cmake/fftw3/FFTW3Config.cmake 2026-07-06T13:07:35,229 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/cmake/fftw3/FFTW3ConfigVersion.cmake 2026-07-06T13:07:35,230 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/cmake/fftw3/FFTW3LibraryDepends.cmake 2026-07-06T13:07:35,230 -- Installing: /tmp/tmprioxvnfi/build/external/fftw3/lib/cmake/fftw3/FFTW3LibraryDepends-release.cmake 2026-07-06T13:07:35,546 [137/308] Completed 'fftw3_double_external' 2026-07-06T13:10:03,672 [138/308] Performing build step for 'hdf5_external' 2026-07-06T13:10:08,021 [139/308] Performing install step for 'hdf5_external' 2026-07-06T13:10:08,022 -- Install configuration: "" 2026-07-06T13:10:08,023 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/hdf5.h 2026-07-06T13:10:08,024 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5api_adpt.h 2026-07-06T13:10:08,024 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5encode.h 2026-07-06T13:10:08,025 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5public.h 2026-07-06T13:10:08,026 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Apublic.h 2026-07-06T13:10:08,028 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5ACpublic.h 2026-07-06T13:10:08,028 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Cpublic.h 2026-07-06T13:10:08,029 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Dpublic.h 2026-07-06T13:10:08,030 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Epubgen.h 2026-07-06T13:10:08,030 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Epublic.h 2026-07-06T13:10:08,031 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5ESdevelop.h 2026-07-06T13:10:08,032 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5ESpublic.h 2026-07-06T13:10:08,033 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Fpublic.h 2026-07-06T13:10:08,033 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDcore.h 2026-07-06T13:10:08,034 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDdevelop.h 2026-07-06T13:10:08,035 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDdirect.h 2026-07-06T13:10:08,035 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDfamily.h 2026-07-06T13:10:08,036 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDhdfs.h 2026-07-06T13:10:08,037 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDlog.h 2026-07-06T13:10:08,038 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDmirror.h 2026-07-06T13:10:08,038 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDmpi.h 2026-07-06T13:10:08,039 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDmpio.h 2026-07-06T13:10:08,040 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDmulti.h 2026-07-06T13:10:08,041 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDonion.h 2026-07-06T13:10:08,041 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDpublic.h 2026-07-06T13:10:08,042 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDros3.h 2026-07-06T13:10:08,043 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDs3comms.h 2026-07-06T13:10:08,044 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDsec2.h 2026-07-06T13:10:08,044 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDsplitter.h 2026-07-06T13:10:08,045 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDstdio.h 2026-07-06T13:10:08,046 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDwindows.h 2026-07-06T13:10:08,047 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDsubfiling.h 2026-07-06T13:10:08,048 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FDioc.h 2026-07-06T13:10:08,049 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Gpublic.h 2026-07-06T13:10:08,049 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Idevelop.h 2026-07-06T13:10:08,050 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Ipublic.h 2026-07-06T13:10:08,050 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Ldevelop.h 2026-07-06T13:10:08,051 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Lpublic.h 2026-07-06T13:10:08,052 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Mpublic.h 2026-07-06T13:10:08,052 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5MMpublic.h 2026-07-06T13:10:08,053 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Opublic.h 2026-07-06T13:10:08,054 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Ppublic.h 2026-07-06T13:10:08,054 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5PLextern.h 2026-07-06T13:10:08,055 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5PLpublic.h 2026-07-06T13:10:08,056 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Rpublic.h 2026-07-06T13:10:08,056 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Spublic.h 2026-07-06T13:10:08,057 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Tdevelop.h 2026-07-06T13:10:08,057 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Tpublic.h 2026-07-06T13:10:08,058 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5TSdevelop.h 2026-07-06T13:10:08,059 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5VLconnector.h 2026-07-06T13:10:08,059 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5VLconnector_passthru.h 2026-07-06T13:10:08,060 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5VLnative.h 2026-07-06T13:10:08,061 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5VLpassthru.h 2026-07-06T13:10:08,062 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5VLpublic.h 2026-07-06T13:10:08,063 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Zdevelop.h 2026-07-06T13:10:08,063 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Zpublic.h 2026-07-06T13:10:08,064 -- Up-to-date: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Epubgen.h 2026-07-06T13:10:08,065 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5version.h 2026-07-06T13:10:08,066 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5overflow.h 2026-07-06T13:10:08,067 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5pubconf.h 2026-07-06T13:10:08,067 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/lib/libhdf5.a 2026-07-06T13:10:08,068 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/lib/pkgconfig/hdf5.pc 2026-07-06T13:10:08,069 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5cc 2026-07-06T13:10:08,070 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/mirror_server 2026-07-06T13:10:08,071 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/mirror_server_stop 2026-07-06T13:10:08,071 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5fuse.sh 2026-07-06T13:10:08,072 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/lib/libhdf5_tools.a 2026-07-06T13:10:08,073 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5diff 2026-07-06T13:10:08,074 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5ls 2026-07-06T13:10:08,075 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5debug 2026-07-06T13:10:08,075 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5repart 2026-07-06T13:10:08,076 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5mkgrp 2026-07-06T13:10:08,077 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5clear 2026-07-06T13:10:08,078 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5delete 2026-07-06T13:10:08,079 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5import 2026-07-06T13:10:08,080 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5repack 2026-07-06T13:10:08,080 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5jam 2026-07-06T13:10:08,081 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5unjam 2026-07-06T13:10:08,082 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5copy 2026-07-06T13:10:08,082 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5stat 2026-07-06T13:10:08,083 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5dump 2026-07-06T13:10:08,084 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5format_convert 2026-07-06T13:10:08,084 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5perf_serial 2026-07-06T13:10:08,085 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5DOpublic.h 2026-07-06T13:10:08,086 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5DSpublic.h 2026-07-06T13:10:08,087 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5IMpublic.h 2026-07-06T13:10:08,087 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5LTpublic.h 2026-07-06T13:10:08,088 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5PTpublic.h 2026-07-06T13:10:08,089 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5TBpublic.h 2026-07-06T13:10:08,089 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5LDpublic.h 2026-07-06T13:10:08,090 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/hdf5_hl.h 2026-07-06T13:10:08,091 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/lib/libhdf5_hl.a 2026-07-06T13:10:08,092 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/lib/pkgconfig/hdf5_hl.pc 2026-07-06T13:10:08,092 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5hlcc 2026-07-06T13:10:08,093 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5watch 2026-07-06T13:10:08,094 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5AbstractDs.h 2026-07-06T13:10:08,095 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Alltypes.h 2026-07-06T13:10:08,096 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5ArrayType.h 2026-07-06T13:10:08,096 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5AtomType.h 2026-07-06T13:10:08,097 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Attribute.h 2026-07-06T13:10:08,098 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Classes.h 2026-07-06T13:10:08,099 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5CommonFG.h 2026-07-06T13:10:08,100 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5CompType.h 2026-07-06T13:10:08,101 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Cpp.h 2026-07-06T13:10:08,102 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5CppDoc.h 2026-07-06T13:10:08,102 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5DataSet.h 2026-07-06T13:10:08,103 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5DataSpace.h 2026-07-06T13:10:08,104 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5DataType.h 2026-07-06T13:10:08,104 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5DaccProp.h 2026-07-06T13:10:08,105 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5DcreatProp.h 2026-07-06T13:10:08,106 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5DxferProp.h 2026-07-06T13:10:08,106 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5EnumType.h 2026-07-06T13:10:08,107 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Exception.h 2026-07-06T13:10:08,108 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FaccProp.h 2026-07-06T13:10:08,109 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FcreatProp.h 2026-07-06T13:10:08,110 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5File.h 2026-07-06T13:10:08,111 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5FloatType.h 2026-07-06T13:10:08,111 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Group.h 2026-07-06T13:10:08,112 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5IdComponent.h 2026-07-06T13:10:08,113 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Include.h 2026-07-06T13:10:08,114 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5IntType.h 2026-07-06T13:10:08,114 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5LaccProp.h 2026-07-06T13:10:08,115 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5LcreatProp.h 2026-07-06T13:10:08,116 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Library.h 2026-07-06T13:10:08,116 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Location.h 2026-07-06T13:10:08,117 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5Object.h 2026-07-06T13:10:08,117 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5OcreatProp.h 2026-07-06T13:10:08,118 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5PredType.h 2026-07-06T13:10:08,119 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5PropList.h 2026-07-06T13:10:08,120 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5StrType.h 2026-07-06T13:10:08,121 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5VarLenType.h 2026-07-06T13:10:08,121 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/lib/libhdf5_cpp.a 2026-07-06T13:10:08,122 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/lib/pkgconfig/hdf5_cpp.pc 2026-07-06T13:10:08,122 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5c++ 2026-07-06T13:10:08,123 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/include/H5PacketTable.h 2026-07-06T13:10:08,124 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/lib/libhdf5_hl_cpp.a 2026-07-06T13:10:08,125 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/lib/pkgconfig/hdf5_hl_cpp.pc 2026-07-06T13:10:08,125 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/bin/h5hlc++ 2026-07-06T13:10:08,126 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/cmake/hdf5-targets.cmake 2026-07-06T13:10:08,127 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/cmake/hdf5-targets-noconfig.cmake 2026-07-06T13:10:08,128 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/cmake/hdf5-config.cmake 2026-07-06T13:10:08,128 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/cmake/hdf5-config-version.cmake 2026-07-06T13:10:08,129 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/lib/libhdf5.settings 2026-07-06T13:10:08,130 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/share/COPYING 2026-07-06T13:10:08,131 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/share/USING_HDF5_CMake.txt 2026-07-06T13:10:08,132 -- Installing: /tmp/tmprioxvnfi/build/external/hdf5/share/RELEASE.txt 2026-07-06T13:10:08,163 [140/308] Completed 'hdf5_external' 2026-07-06T13:10:20,972 [141/308] Building CXX object CMakeFiles/xmippLib.dir/src/python_filename.cpp.o 2026-07-06T13:10:23,030 [142/308] Building CXX object CMakeFiles/xmippLib.dir/src/python_constants.cpp.o 2026-07-06T13:10:29,882 [143/308] Building CXX object CMakeFiles/xmippLib.dir/src/python_program.cpp.o 2026-07-06T13:10:33,342 [144/308] Building CXX object CMakeFiles/xmippLib.dir/src/python_autopicker.cpp.o 2026-07-06T13:10:39,354 [145/308] Building C object CMakeFiles/sqlite3.dir/_deps/sqlite3-src/sqlite3.c.o 2026-07-06T13:10:39,431 [146/308] Building CXX object CMakeFiles/xmippLib.dir/src/python_fourierprojector.cpp.o 2026-07-06T13:10:39,814 [147/308] Linking C static library libsqlite3.a 2026-07-06T13:10:49,164 [148/308] Building CXX object CMakeFiles/xmippLib.dir/src/python_symmetry.cpp.o 2026-07-06T13:10:49,775 [149/308] Building CXX object CMakeFiles/xmippLib.dir/src/python_metadata.cpp.o 2026-07-06T13:11:00,457 [150/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/alglib/alglibmisc.cpp.o 2026-07-06T13:11:06,195 [151/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/alglib/diffequations.cpp.o 2026-07-06T13:11:07,291 [152/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/alglib/alglibinternal.cpp.o 2026-07-06T13:11:17,034 [153/308] Building CXX object CMakeFiles/xmippLib.dir/src/xmippmodule.cpp.o 2026-07-06T13:11:17,513 [154/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/alglib/fasttransforms.cpp.o 2026-07-06T13:11:18,156 [155/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/alglib/integration.cpp.o 2026-07-06T13:11:22,201 [156/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/alglib/kernels_fma.cpp.o 2026-07-06T13:11:22,619 [157/308] Building CXX object 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CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/round.cc.o 2026-07-06T13:13:22,380 [202/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/wavelet.cc.o 2026-07-06T13:13:23,370 [203/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/traceline.cc.o 2026-07-06T13:13:24,971 [204/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/waveletfilters.cc.o 2026-07-06T13:13:25,482 [205/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/linearalgebra.cc.o 2026-07-06T13:13:25,639 [206/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/pyramidtools.cc.o 2026-07-06T13:13:25,954 [207/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/waveletfiltersfract.cc.o 2026-07-06T13:13:27,267 [208/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/window.cc.o 2026-07-06T13:13:27,744 [209/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/bilib/wavelettools.cc.o 2026-07-06T13:13:29,528 [210/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/comment_list.cpp.o 2026-07-06T13:13:35,964 [211/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/linear_system_helper.cpp.o 2026-07-06T13:13:41,073 [212/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/alglib/interpolation.cpp.o 2026-07-06T13:13:53,254 [213/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/histogram.cpp.o 2026-07-06T13:14:04,871 [214/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/geometry.cpp.o 2026-07-06T13:14:04,872 In file included from /usr/include/c++/12/vector:70, 2026-07-06T13:14:04,873 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/matrix1d.h:31, 2026-07-06T13:14:04,873 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:34, 2026-07-06T13:14:04,874 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/geometry.h:29, 2026-07-06T13:14:04,875 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/geometry.cpp:29: 2026-07-06T13:14:04,877 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2026-07-06T13:14:04,878 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-07-06T13:14:04,879 439 | vector<_Tp, _Alloc>:: 2026-07-06T13:14:04,880 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:04,881 In file included from /usr/include/c++/12/vector:64: 2026-07-06T13:14:04,882 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2026-07-06T13:14:04,883 inlined from ‘void computeCircleAroundE(const Matrix2D&, double, double, std::vector >&)’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/geometry.cpp:1111:36: 2026-07-06T13:14:04,884 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-07-06T13:14:04,885 1287 | _M_realloc_insert(end(), __x); 2026-07-06T13:14:04,886 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-07-06T13:14:04,887 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2026-07-06T13:14:04,887 inlined from ‘void computeCircleAroundE(const Matrix2D&, double, double, std::vector >&)’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/geometry.cpp:1112:36: 2026-07-06T13:14:04,888 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-07-06T13:14:04,889 1287 | _M_realloc_insert(end(), __x); 2026-07-06T13:14:04,890 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-07-06T13:14:04,891 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, 2026-07-06T13:14:04,892 inlined from ‘void computeCircleAroundE(const Matrix2D&, double, double, std::vector >&)’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/geometry.cpp:1113:36: 2026-07-06T13:14:04,893 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-07-06T13:14:04,894 1287 | _M_realloc_insert(end(), __x); 2026-07-06T13:14:04,895 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-07-06T13:14:20,399 [215/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_base.cpp.o 2026-07-06T13:14:22,145 [216/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/matrix1d.cpp.o 2026-07-06T13:14:23,075 [217/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/matrix2d.cpp.o 2026-07-06T13:14:23,076 In file included from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/numerical_recipes.h:32, 2026-07-06T13:14:23,077 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/matrix2d.cpp:29: 2026-07-06T13:14:23,078 In function ‘void free_Tmatrix(T**&, int, int, int, int) [with T = double]’, 2026-07-06T13:14:23,078 inlined from ‘void free_Tmatrix(T**&, int, int, int, int) [with T = double]’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:61:25, 2026-07-06T13:14:23,079 inlined from ‘void Matrix2D::killAdaptationForNumericalRecipes(T**) const [with T = double]’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/matrix2d.h:890:21: 2026-07-06T13:14:23,080 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:67:17: warning: ‘void free(void*)’ called on pointer ‘*(double**)((char*))’ with nonzero offset 8 [-Wfree-nonheap-object] 2026-07-06T13:14:23,081 67 | free((char*)(m[i] + nrl)); 2026-07-06T13:14:23,082 | ~~~~^~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:23,083 In function ‘void free_Tmatrix(T**&, int, int, int, int) [with T = int]’, 2026-07-06T13:14:23,084 inlined from ‘void free_Tmatrix(T**&, int, int, int, int) [with T = int]’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:61:25, 2026-07-06T13:14:23,086 inlined from ‘void Matrix2D::killAdaptationForNumericalRecipes(T**) const [with T = int]’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/matrix2d.h:890:21: 2026-07-06T13:14:23,087 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:67:17: warning: ‘void free(void*)’ called on pointer ‘*(int**)((char*))’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-07-06T13:14:23,088 67 | free((char*)(m[i] + nrl)); 2026-07-06T13:14:23,089 | ~~~~^~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:23,091 In function ‘void free_Tmatrix(T**&, int, int, int, int) [with T = float]’, 2026-07-06T13:14:23,092 inlined from ‘void free_Tmatrix(T**&, int, int, int, int) [with T = float]’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:61:25, 2026-07-06T13:14:23,093 inlined from ‘void Matrix2D::killAdaptationForNumericalRecipes(T**) const [with T = float]’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/matrix2d.h:890:21: 2026-07-06T13:14:23,094 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:67:17: warning: ‘void free(void*)’ called on pointer ‘*(float**)((char*))’ with nonzero offset 4 [-Wfree-nonheap-object] 2026-07-06T13:14:23,096 67 | free((char*)(m[i] + nrl)); 2026-07-06T13:14:23,097 | ~~~~^~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:23,098 In function ‘void free_Tmatrix(T**&, int, int, int, int) [with T = unsigned char]’, 2026-07-06T13:14:23,099 inlined from ‘void free_Tmatrix(T**&, int, int, int, int) [with T = unsigned char]’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:61:25, 2026-07-06T13:14:23,100 inlined from ‘void Matrix2D::killAdaptationForNumericalRecipes(T**) const [with T = unsigned char]’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/matrix2d.h:890:21: 2026-07-06T13:14:23,101 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/xmipp_memory.h:67:17: warning: ‘void free(void*)’ called on pointer ‘*(unsigned char**)((char*))’ with nonzero offset 1 [-Wfree-nonheap-object] 2026-07-06T13:14:23,102 67 | free((char*)(m[i] + nrl)); 2026-07-06T13:14:23,103 | ~~~~^~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:23,104 In file included from /usr/include/c++/12/vector:70, 2026-07-06T13:14:23,106 from /usr/include/c++/12/queue:61, 2026-07-06T13:14:23,107 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/matrix2d.cpp:26: 2026-07-06T13:14:23,108 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::complex}; _Tp = std::complex; _Alloc = std::allocator >]’: 2026-07-06T13:14:23,109 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-07-06T13:14:23,110 439 | vector<_Tp, _Alloc>:: 2026-07-06T13:14:23,110 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:23,111 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::complex}; _Tp = std::complex; _Alloc = std::allocator >]’, 2026-07-06T13:14:23,112 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::complex; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-07-06T13:14:23,113 inlined from ‘void allEigs(const Matrix2D&, std::vector >&)’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/matrix2d.cpp:357:17: 2026-07-06T13:14:23,114 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-07-06T13:14:23,115 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-07-06T13:14:23,124 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:30,865 [218/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_generator.cpp.o 2026-07-06T13:14:34,803 [219/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_db.cpp.o 2026-07-06T13:14:34,804 In file included from /usr/include/c++/12/vector:70, 2026-07-06T13:14:34,805 from /usr/include/c++/12/bits/random.h:34, 2026-07-06T13:14:34,807 from /usr/include/c++/12/random:49, 2026-07-06T13:14:34,808 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_db.cpp:28: 2026-07-06T13:14:34,809 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = MDObject; _Alloc = std::allocator]’: 2026-07-06T13:14:34,810 /usr/include/c++/12/bits/vector.tcc:523:5: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-07-06T13:14:34,811 523 | vector<_Tp, _Alloc>:: 2026-07-06T13:14:34,812 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:34,813 In file included from /usr/include/c++/12/vector:64: 2026-07-06T13:14:34,814 In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = MDObject; _Alloc = std::allocator]’, 2026-07-06T13:14:34,815 inlined from ‘virtual void MetaDataDb::getColumnValues(MDLabel, std::vector&) const’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_db.cpp:126:21: 2026-07-06T13:14:34,816 /usr/include/c++/12/bits/stl_vector.h:1032:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-07-06T13:14:34,817 1032 | _M_fill_insert(end(), __new_size - size(), __x); 2026-07-06T13:14:34,818 | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:34,819 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const MDLabel&}; _Tp = MDObject; _Alloc = std::allocator]’: 2026-07-06T13:14:34,820 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-07-06T13:14:34,821 439 | vector<_Tp, _Alloc>:: 2026-07-06T13:14:34,822 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:34,823 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const MDLabel&}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-07-06T13:14:34,824 inlined from ‘std::vector MetaDataDb::getObjectsForActiveLabels() const’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_db.cpp:207:28: 2026-07-06T13:14:34,825 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-07-06T13:14:34,826 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-07-06T13:14:34,827 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:35,905 [220/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_query.cpp.o 2026-07-06T13:14:38,672 [221/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_object.cpp.o 2026-07-06T13:14:38,673 In file included from /usr/include/c++/12/vector:70, 2026-07-06T13:14:38,674 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/xmipp_strings.h:29, 2026-07-06T13:14:38,674 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_label.h:31, 2026-07-06T13:14:38,676 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_object.h:31, 2026-07-06T13:14:38,676 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_object.cpp:30: 2026-07-06T13:14:38,678 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’: 2026-07-06T13:14:38,679 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-07-06T13:14:38,679 439 | vector<_Tp, _Alloc>:: 2026-07-06T13:14:38,680 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:38,682 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double&}; _Tp = double; _Alloc = std::allocator]’, 2026-07-06T13:14:38,683 inlined from ‘bool MDObject::fromStream(std::istream&, bool)’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_object.cpp:505:47: 2026-07-06T13:14:38,684 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-07-06T13:14:38,685 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-07-06T13:14:38,686 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:42,224 [222/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_row_sql.cpp.o 2026-07-06T13:14:42,369 [223/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_extension.cpp.o 2026-07-06T13:14:45,916 [224/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_row_vec.cpp.o 2026-07-06T13:14:45,917 In file included from /usr/include/c++/12/vector:70, 2026-07-06T13:14:45,919 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/xmipp_strings.h:29, 2026-07-06T13:14:45,920 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_label.h:31, 2026-07-06T13:14:45,922 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_row_base.h:31, 2026-07-06T13:14:45,924 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_row_vec.h:30, 2026-07-06T13:14:45,925 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_row_vec.cpp:29: 2026-07-06T13:14:45,926 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’: 2026-07-06T13:14:45,927 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-07-06T13:14:45,928 439 | vector<_Tp, _Alloc>:: 2026-07-06T13:14:45,929 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:45,931 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-07-06T13:14:45,932 inlined from ‘size_t MDRowVec::newCol(MDLabel)’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_row_vec.cpp:167:31: 2026-07-06T13:14:45,933 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-07-06T13:14:45,934 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-07-06T13:14:45,935 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:45,936 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-07-06T13:14:45,937 inlined from ‘size_t MDRowVec::newCol(MDLabel)’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_row_vec.cpp:179:23: 2026-07-06T13:14:45,938 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-07-06T13:14:45,939 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-07-06T13:14:45,940 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:45,941 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-07-06T13:14:45,943 inlined from ‘virtual void MDRowVec::setValue(const MDObject&)’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_row_vec.cpp:208:31: 2026-07-06T13:14:45,944 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-07-06T13:14:45,946 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-07-06T13:14:45,956 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,351 [225/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array_base.cpp.o 2026-07-06T13:14:51,602 [226/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array.cpp.o 2026-07-06T13:14:51,603 FAILED: CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array.cpp.o 2026-07-06T13:14:51,604 /usr/bin/arm-linux-gnueabihf-g++ -DxmippLib_EXPORTS -I/tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src -I/tmp/tmprioxvnfi/build/_deps/xmipp3_sources-src/src/xmipp/libraries -I/tmp/pip-wheel-eu69670o/pyxmipp3_0a58fb2f78b6472ca489a6d3d5e8d45a/src -I/api -I/tmp/tmprioxvnfi/build/_deps/sqlite3-src -I/tmp/tmprioxvnfi/build/_deps/libsvm-src -I/tmp/tmprioxvnfi/build/_deps/libtiff-src/libtiff -I/tmp/tmprioxvnfi/build/_deps/libtiff-build/libtiff -isystem /usr/include/python3.11 -isystem /tmp/pip-build-env-gr67uj7n/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -isystem /tmp/tmprioxvnfi/build/external/hdf5/include -isystem /tmp/tmprioxvnfi/build/external/fftw3/include -isystem /tmp/tmprioxvnfi/build/external/libjpeg-turbo/include -O3 -DNDEBUG -fPIC -std=gnu++17 -MD -MT CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array.cpp.o -MF CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array.cpp.o.d -o CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array.cpp.o -c /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp 2026-07-06T13:14:51,605 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1138:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(bool*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,607 1138 | template FILE* MultidimArray::mmapFile(bool*&, unsigned long) const; 2026-07-06T13:14:51,607 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,608 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = bool; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,609 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-07-06T13:14:51,610 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,611 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1139:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(float*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,611 1139 | template FILE* MultidimArray::mmapFile(float*&, unsigned long) const; 2026-07-06T13:14:51,612 | ^~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,613 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = float; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,614 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-07-06T13:14:51,615 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,616 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1140:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(char*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,617 1140 | template FILE* MultidimArray::mmapFile(char*&, unsigned long) const; 2026-07-06T13:14:51,617 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,618 In file included from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:30: 2026-07-06T13:14:51,619 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:344:11: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = char; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,620 344 | FILE* mmapFile(T* &_data, size_t nzyxDim) const; 2026-07-06T13:14:51,621 | ^~~~~~~~ 2026-07-06T13:14:51,622 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1141:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(int*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,623 1141 | template FILE* MultidimArray::mmapFile(int*&, unsigned long) const; 2026-07-06T13:14:51,624 | ^~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,624 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:344:11: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = int; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,626 344 | FILE* mmapFile(T* &_data, size_t nzyxDim) const; 2026-07-06T13:14:51,627 | ^~~~~~~~ 2026-07-06T13:14:51,628 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1142:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(long int*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,629 1142 | template FILE* MultidimArray::mmapFile(long*&, unsigned long) const; 2026-07-06T13:14:51,629 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,630 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = long int; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,631 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-07-06T13:14:51,632 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,635 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1143:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(short int*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,636 1143 | template FILE* MultidimArray::mmapFile(short*&, unsigned long) const; 2026-07-06T13:14:51,637 | ^~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,638 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = short int; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,639 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-07-06T13:14:51,646 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,647 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1144:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(unsigned char*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,648 1144 | template FILE* MultidimArray::mmapFile(unsigned char*&, unsigned long) const; 2026-07-06T13:14:51,649 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,650 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = unsigned char; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,651 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-07-06T13:14:51,652 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,653 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1145:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(unsigned int*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,654 1145 | template FILE* MultidimArray::mmapFile(unsigned int*&, unsigned long) const; 2026-07-06T13:14:51,655 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,656 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = unsigned int; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,657 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-07-06T13:14:51,658 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,659 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1146:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(long unsigned int*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,660 1146 | template FILE* MultidimArray::mmapFile(unsigned long*&, unsigned long) const; 2026-07-06T13:14:51,661 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,663 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = long unsigned int; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,663 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-07-06T13:14:51,664 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,675 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1147:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(short unsigned int*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,688 1147 | template FILE* MultidimArray::mmapFile(unsigned short*&, unsigned long) const; 2026-07-06T13:14:51,689 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,690 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = short unsigned int; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,691 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-07-06T13:14:51,692 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,692 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1148:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray >::mmapFile(std::complex*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,693 1148 | template FILE* MultidimArray>::mmapFile(std::complex*&, unsigned long) const; 2026-07-06T13:14:51,694 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,695 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:344:11: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = std::complex; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,696 344 | FILE* mmapFile(T* &_data, size_t nzyxDim) const; 2026-07-06T13:14:51,697 | ^~~~~~~~ 2026-07-06T13:14:51,698 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1149:16: error: template-id ‘mmapFile<>’ for ‘FILE* MultidimArray::mmapFile(half_float::half*&, long unsigned int) const’ does not match any template declaration 2026-07-06T13:14:51,699 1149 | template FILE* MultidimArray::mmapFile(half_float::half*&, unsigned long) const; 2026-07-06T13:14:51,700 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,701 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:859:7: note: candidate is: ‘FILE* MultidimArray::mmapFile(T*&, size_t) const [with T = half_float::half; FILE = FILE; size_t = unsigned int]’ 2026-07-06T13:14:51,702 859 | FILE* MultidimArray::mmapFile(T* &_data, size_t nzyxDim) const 2026-07-06T13:14:51,702 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,703 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1152:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,704 1152 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,705 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,706 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = bool]’ 2026-07-06T13:14:51,707 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,708 | ^~~~~~ 2026-07-06T13:14:51,719 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = bool; size_t = unsigned int]’ 2026-07-06T13:14:51,720 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-07-06T13:14:51,720 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,721 In file included from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:36: 2026-07-06T13:14:51,722 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,723 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,724 | ^~~~~~ 2026-07-06T13:14:51,725 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,726 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,727 | ^~~~~~ 2026-07-06T13:14:51,728 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,728 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,729 | ^~~~~~ 2026-07-06T13:14:51,730 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,731 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,737 | ^~~~~~ 2026-07-06T13:14:51,738 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1153:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,739 1153 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,740 | ^~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,741 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = float]’ 2026-07-06T13:14:51,742 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,743 | ^~~~~~ 2026-07-06T13:14:51,745 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = float; size_t = unsigned int]’ 2026-07-06T13:14:51,746 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-07-06T13:14:51,747 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,748 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,749 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,750 | ^~~~~~ 2026-07-06T13:14:51,766 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,766 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,767 | ^~~~~~ 2026-07-06T13:14:51,768 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,770 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,771 | ^~~~~~ 2026-07-06T13:14:51,772 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,773 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,773 | ^~~~~~ 2026-07-06T13:14:51,774 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1154:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,775 1154 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,776 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,777 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = char]’ 2026-07-06T13:14:51,778 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,778 | ^~~~~~ 2026-07-06T13:14:51,779 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:475:10: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = char; size_t = unsigned int]’ 2026-07-06T13:14:51,780 475 | void resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy=true); 2026-07-06T13:14:51,781 | ^~~~~~ 2026-07-06T13:14:51,782 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,782 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,784 | ^~~~~~ 2026-07-06T13:14:51,785 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,786 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,787 | ^~~~~~ 2026-07-06T13:14:51,787 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,788 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,789 | ^~~~~~ 2026-07-06T13:14:51,790 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,791 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,792 | ^~~~~~ 2026-07-06T13:14:51,793 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1155:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,794 1155 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,795 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,796 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = long int]’ 2026-07-06T13:14:51,797 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,798 | ^~~~~~ 2026-07-06T13:14:51,799 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = long int; size_t = unsigned int]’ 2026-07-06T13:14:51,799 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-07-06T13:14:51,801 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,801 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,802 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,803 | ^~~~~~ 2026-07-06T13:14:51,804 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,804 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,805 | ^~~~~~ 2026-07-06T13:14:51,806 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,807 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,807 | ^~~~~~ 2026-07-06T13:14:51,808 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,809 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,810 | ^~~~~~ 2026-07-06T13:14:51,811 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1156:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,811 1156 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,812 | ^~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,813 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = int]’ 2026-07-06T13:14:51,814 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,815 | ^~~~~~ 2026-07-06T13:14:51,816 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:475:10: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = int; size_t = unsigned int]’ 2026-07-06T13:14:51,817 475 | void resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy=true); 2026-07-06T13:14:51,817 | ^~~~~~ 2026-07-06T13:14:51,818 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,819 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,820 | ^~~~~~ 2026-07-06T13:14:51,821 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,822 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,822 | ^~~~~~ 2026-07-06T13:14:51,823 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,824 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,825 | ^~~~~~ 2026-07-06T13:14:51,826 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,826 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,828 | ^~~~~~ 2026-07-06T13:14:51,829 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1157:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,830 1157 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,831 | ^~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,832 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = short int]’ 2026-07-06T13:14:51,833 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,833 | ^~~~~~ 2026-07-06T13:14:51,834 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = short int; size_t = unsigned int]’ 2026-07-06T13:14:51,835 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-07-06T13:14:51,836 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,837 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,837 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,838 | ^~~~~~ 2026-07-06T13:14:51,839 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,840 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,841 | ^~~~~~ 2026-07-06T13:14:51,842 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,843 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,844 | ^~~~~~ 2026-07-06T13:14:51,845 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,846 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,847 | ^~~~~~ 2026-07-06T13:14:51,848 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1158:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,849 1158 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,850 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,850 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = unsigned char]’ 2026-07-06T13:14:51,851 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,852 | ^~~~~~ 2026-07-06T13:14:51,853 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = unsigned char; size_t = unsigned int]’ 2026-07-06T13:14:51,854 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-07-06T13:14:51,854 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,855 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,856 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,857 | ^~~~~~ 2026-07-06T13:14:51,858 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,859 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,860 | ^~~~~~ 2026-07-06T13:14:51,860 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,861 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,862 | ^~~~~~ 2026-07-06T13:14:51,863 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,864 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,864 | ^~~~~~ 2026-07-06T13:14:51,865 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1159:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,866 1159 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,867 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,868 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = unsigned int]’ 2026-07-06T13:14:51,869 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,870 | ^~~~~~ 2026-07-06T13:14:51,870 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = unsigned int; size_t = unsigned int]’ 2026-07-06T13:14:51,872 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-07-06T13:14:51,872 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,873 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,874 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,875 | ^~~~~~ 2026-07-06T13:14:51,876 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,877 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,878 | ^~~~~~ 2026-07-06T13:14:51,879 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,880 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,881 | ^~~~~~ 2026-07-06T13:14:51,882 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,883 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,883 | ^~~~~~ 2026-07-06T13:14:51,884 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1160:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,886 1160 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,887 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,888 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = long unsigned int]’ 2026-07-06T13:14:51,889 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,889 | ^~~~~~ 2026-07-06T13:14:51,890 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = long unsigned int; size_t = unsigned int]’ 2026-07-06T13:14:51,891 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-07-06T13:14:51,892 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,893 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,894 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,895 | ^~~~~~ 2026-07-06T13:14:51,895 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,896 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,897 | ^~~~~~ 2026-07-06T13:14:51,898 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,899 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,900 | ^~~~~~ 2026-07-06T13:14:51,901 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,902 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,903 | ^~~~~~ 2026-07-06T13:14:51,904 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1161:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,904 1161 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,906 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,907 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = short unsigned int]’ 2026-07-06T13:14:51,908 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,909 | ^~~~~~ 2026-07-06T13:14:51,909 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = short unsigned int; size_t = unsigned int]’ 2026-07-06T13:14:51,910 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-07-06T13:14:51,911 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,912 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,913 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,914 | ^~~~~~ 2026-07-06T13:14:51,915 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,916 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,917 | ^~~~~~ 2026-07-06T13:14:51,917 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,918 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,919 | ^~~~~~ 2026-07-06T13:14:51,920 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,920 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,921 | ^~~~~~ 2026-07-06T13:14:51,922 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1162:15: error: template-id ‘resize<>’ for ‘void MultidimArray >::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,923 1162 | template void MultidimArray>::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,924 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,924 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = std::complex]’ 2026-07-06T13:14:51,925 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,926 | ^~~~~~ 2026-07-06T13:14:51,927 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:475:10: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = std::complex; size_t = unsigned int]’ 2026-07-06T13:14:51,928 475 | void resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy=true); 2026-07-06T13:14:51,929 | ^~~~~~ 2026-07-06T13:14:51,930 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,931 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,932 | ^~~~~~ 2026-07-06T13:14:51,933 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,934 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,935 | ^~~~~~ 2026-07-06T13:14:51,936 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,937 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,938 | ^~~~~~ 2026-07-06T13:14:51,939 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,940 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,941 | ^~~~~~ 2026-07-06T13:14:51,942 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:1163:15: error: template-id ‘resize<>’ for ‘void MultidimArray::resize(long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool)’ does not match any template declaration 2026-07-06T13:14:51,943 1163 | template void MultidimArray::resize(unsigned long, unsigned long, unsigned long, unsigned long, bool); 2026-07-06T13:14:51,944 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,945 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.h:490:10: note: candidates are: ‘template void MultidimArray::resize(const MultidimArray&, bool) [with T = half_float::half]’ 2026-07-06T13:14:51,946 490 | void resize(const MultidimArray &v, bool copy = true) 2026-07-06T13:14:51,947 | ^~~~~~ 2026-07-06T13:14:51,948 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array.cpp:983:6: note: ‘void MultidimArray::resize(size_t, size_t, size_t, size_t, bool) [with T = half_float::half; size_t = unsigned int]’ 2026-07-06T13:14:51,949 983 | void MultidimArray::resize(size_t Ndim, size_t Zdim, size_t Ydim, size_t Xdim, bool copy) 2026-07-06T13:14:51,950 | ^~~~~~~~~~~~~~~~ 2026-07-06T13:14:51,950 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:761:10: note: ‘void MultidimArrayBase::resize(size_t, size_t, size_t)’ 2026-07-06T13:14:51,951 761 | void resize(size_t Zdim, size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,952 | ^~~~~~ 2026-07-06T13:14:51,953 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:773:10: note: ‘void MultidimArrayBase::resize(size_t, size_t)’ 2026-07-06T13:14:51,953 773 | void resize(size_t Ydim, size_t Xdim) 2026-07-06T13:14:51,954 | ^~~~~~ 2026-07-06T13:14:51,955 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:785:10: note: ‘void MultidimArrayBase::resize(size_t)’ 2026-07-06T13:14:51,956 785 | void resize(size_t Xdim) 2026-07-06T13:14:51,957 | ^~~~~~ 2026-07-06T13:14:51,958 /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/multidim_array_base.h:793:10: note: ‘void MultidimArrayBase::resize(ArrayDim&, bool)’ 2026-07-06T13:14:51,959 793 | void resize(ArrayDim &adim, bool copy=true); 2026-07-06T13:14:51,960 | ^~~~~~ 2026-07-06T13:15:05,769 [227/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_sql.cpp.o 2026-07-06T13:15:05,770 In file included from /usr/include/c++/12/vector:70, 2026-07-06T13:15:05,771 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/xmipp_strings.h:29, 2026-07-06T13:15:05,772 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_sql.h:31, 2026-07-06T13:15:05,773 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_sql.cpp:29: 2026-07-06T13:15:05,774 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const MDLabel&}; _Tp = MDObject; _Alloc = std::allocator]’: 2026-07-06T13:15:05,775 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-07-06T13:15:05,776 439 | vector<_Tp, _Alloc>:: 2026-07-06T13:15:05,777 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:15:05,778 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const MDLabel&}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-07-06T13:15:05,780 inlined from ‘bool MDSql::getObjectsValues(const std::vector&, std::vector&)’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_sql.cpp:524:36: 2026-07-06T13:15:05,781 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-07-06T13:15:05,781 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-07-06T13:15:05,782 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:15:09,301 [228/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/multidim_array_generic.cpp.o 2026-07-06T13:15:14,047 [229/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_static.cpp.o 2026-07-06T13:15:14,932 [230/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/metadata_vec.cpp.o 2026-07-06T13:15:14,932 In file included from /usr/include/c++/12/vector:70, 2026-07-06T13:15:14,933 from /usr/include/c++/12/bits/random.h:34, 2026-07-06T13:15:14,934 from /usr/include/c++/12/random:49, 2026-07-06T13:15:14,934 from /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_vec.cpp:30: 2026-07-06T13:15:14,935 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const MDObject&}; _Tp = MDObject; _Alloc = std::allocator]’: 2026-07-06T13:15:14,935 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-07-06T13:15:14,936 439 | vector<_Tp, _Alloc>:: 2026-07-06T13:15:14,937 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:15:14,937 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const MDObject&}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-07-06T13:15:14,938 inlined from ‘virtual void MetaDataVec::getColumnValues(MDLabel, std::vector&) const’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_vec.cpp:368:31: 2026-07-06T13:15:14,938 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-07-06T13:15:14,939 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-07-06T13:15:14,939 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:15:14,940 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’: 2026-07-06T13:15:14,941 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-07-06T13:15:14,941 439 | vector<_Tp, _Alloc>:: 2026-07-06T13:15:14,942 | ^~~~~~~~~~~~~~~~~~~ 2026-07-06T13:15:14,942 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-07-06T13:15:14,943 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = MDObject; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-07-06T13:15:14,944 inlined from ‘void MetaDataVec::_setRow(const MDRow&, size_t)’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_vec.cpp:214:26: 2026-07-06T13:15:14,944 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-07-06T13:15:14,945 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-07-06T13:15:14,946 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:15:14,947 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {MDObject}; _Tp = MDObject; _Alloc = std::allocator]’, 2026-07-06T13:15:14,947 inlined from ‘void MetaDataVec::_expand(MetaDataVecRow&, size_t)’ at /tmp/tmprioxvnfi/build/_deps/xmipp_core_sources-src/core/metadata_vec.cpp:888:25: 2026-07-06T13:15:14,948 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-07-06T13:15:14,949 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-07-06T13:15:14,950 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-07-06T13:15:33,272 [231/308] Building CXX object CMakeFiles/xmippLib.dir/_deps/xmipp_core_sources-src/core/alglib/optimization.cpp.o 2026-07-06T13:15:33,273 ninja: build stopped: subcommand failed. 2026-07-06T13:15:38,239 *** CMake build failed 2026-07-06T13:15:38,358 ERROR: [present-rich] Building wheel for pyxmipp3 (pyproject.toml) exited with 1 2026-07-06T13:15:38,380 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmpnvk81vp5[/] 2026-07-06T13:15:38,380 [bold magenta]cwd[/]: /tmp/pip-wheel-eu69670o/pyxmipp3_0a58fb2f78b6472ca489a6d3d5e8d45a 2026-07-06T13:15:38,381 Building wheel for pyxmipp3 (pyproject.toml): finished with status 'error' 2026-07-06T13:15:38,385 ERROR: Failed building wheel for pyxmipp3 2026-07-06T13:15:38,389 Failed to build pyxmipp3 2026-07-06T13:15:38,390 ERROR: Failed to build one or more wheels 2026-07-06T13:15:38,392 Exception information: 2026-07-06T13:15:38,392 Traceback (most recent call last): 2026-07-06T13:15:38,392 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2026-07-06T13:15:38,392 status = run_func(*args) 2026-07-06T13:15:38,392 ^^^^^^^^^^^^^^^ 2026-07-06T13:15:38,392 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2026-07-06T13:15:38,392 return func(self, options, args) 2026-07-06T13:15:38,392 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-07-06T13:15:38,392 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2026-07-06T13:15:38,392 raise CommandError("Failed to build one or more wheels") 2026-07-06T13:15:38,392 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2026-07-06T13:15:38,399 Removed build tracker: '/tmp/pip-build-tracker-pzrn98pi'