2026-07-06T17:16:13,710 Created temporary directory: /tmp/pip-ephem-wheel-cache-oo5522ir 2026-07-06T17:16:13,712 Created temporary directory: /tmp/pip-build-tracker-oedwvbuq 2026-07-06T17:16:13,713 Initialized build tracking at /tmp/pip-build-tracker-oedwvbuq 2026-07-06T17:16:13,713 Created build tracker: /tmp/pip-build-tracker-oedwvbuq 2026-07-06T17:16:13,714 Entered build tracker: /tmp/pip-build-tracker-oedwvbuq 2026-07-06T17:16:13,715 Created temporary directory: /tmp/pip-wheel-tpvftubv 2026-07-06T17:16:13,717 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-06T17:16:13,720 Created temporary directory: /tmp/pip-ephem-wheel-cache-tngj3b08 2026-07-06T17:16:13,741 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-06T17:16:13,744 2 location(s) to search for versions of bioontologies: 2026-07-06T17:16:13,744 * https://pypi.org/simple/bioontologies/ 2026-07-06T17:16:13,744 * https://www.piwheels.org/simple/bioontologies/ 2026-07-06T17:16:13,745 Fetching project page and analyzing links: https://pypi.org/simple/bioontologies/ 2026-07-06T17:16:13,746 Getting page https://pypi.org/simple/bioontologies/ 2026-07-06T17:16:13,747 Found index url https://pypi.org/simple 2026-07-06T17:16:13,977 Fetched page https://pypi.org/simple/bioontologies/ as application/vnd.pypi.simple.v1+json 2026-07-06T17:16:13,989 Skipping link: No binaries permitted for bioontologies: 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(from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10) 2026-07-06T17:16:14,035 Found link https://files.pythonhosted.org/packages/9e/7f/2f3ac90dedc2a14bd0350aa567152f1ee7dbd3aed47c746060ba259e87dd/bioontologies-0.7.2.tar.gz (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10), version: 0.7.2 2026-07-06T17:16:14,035 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/f0/17/7efc0e555d6168d0bef9130600bda1c485dd627844bd0f8a50c35b432d04/bioontologies-0.7.3-py3-none-any.whl (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10) 2026-07-06T17:16:14,036 Found link https://files.pythonhosted.org/packages/b5/c6/76b0616d382135ee9b8618f3a2cf51556495982a974e1e0fc9de0fc67cc1/bioontologies-0.7.3.tar.gz (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10), version: 0.7.3 2026-07-06T17:16:14,037 Skipping link: No binaries permitted for bioontologies: 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(requires-python:>=3.10), version: 0.8.0 2026-07-06T17:16:14,040 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/62/22/68e33e8089d849709bfe2f3875af9c7968965148d9ca4c62b9f7e0b46be9/bioontologies-0.8.1-py3-none-any.whl (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10) 2026-07-06T17:16:14,041 Found link https://files.pythonhosted.org/packages/a8/90/02ef0873a11e8d348223ee7136467022ec76d1dd4e70b52305ca404bc8b1/bioontologies-0.8.1.tar.gz (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10), version: 0.8.1 2026-07-06T17:16:14,041 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/79/55/363e3a8c82d3586ee06961e838e9d591a5e31b0c2192ab2dae020a07a361/bioontologies-0.8.2-py3-none-any.whl (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10) 2026-07-06T17:16:14,042 Found link https://files.pythonhosted.org/packages/39/c6/96139b948f33138b17c7fa4806b27decfea779d971b19bbeae262942be03/bioontologies-0.8.2.tar.gz (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10), version: 0.8.2 2026-07-06T17:16:14,044 Skipping link: No binaries permitted for bioontologies: https://files.pythonhosted.org/packages/c2/7a/fb2d61e10e49be7dd75c554d88e978b1306adf30273d028aabe8e073a778/bioontologies-0.8.3-py3-none-any.whl (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10) 2026-07-06T17:16:14,045 Found link https://files.pythonhosted.org/packages/3d/4e/93bdb9e374ff223374d6470d1686c037091fb8f35958d233fe1d9f4f7bae/bioontologies-0.8.3.tar.gz (from https://pypi.org/simple/bioontologies/) (requires-python:>=3.10), version: 0.8.3 2026-07-06T17:16:14,046 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioontologies/ 2026-07-06T17:16:14,046 Getting page https://www.piwheels.org/simple/bioontologies/ 2026-07-06T17:16:14,048 Found index url https://www.piwheels.org/simple 2026-07-06T17:16:14,242 Fetched page https://www.piwheels.org/simple/bioontologies/ as text/html 2026-07-06T17:16:14,251 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.7.4-py3-none-any.whl#sha256=51e60580ea06e1230c56686ba441e1b3cd74a8bdc22742688817a5e5cb9bc2d6 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.10) 2026-07-06T17:16:14,252 Skipping link: No binaries permitted for bioontologies: https://archive1.piwheels.org/simple/bioontologies/bioontologies-0.7.3-py3-none-any.whl#sha256=1b84212b20d45c37f10400e7361e3624fa88f1342f827530baf741ee75b2dcc0 (from https://www.piwheels.org/simple/bioontologies/) (requires-python:>=3.10) 2026-07-06T17:16:14,253 Skipping link: No binaries permitted for bioontologies: 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Skipping link: not a file: https://pypi.org/simple/bioontologies/ 2026-07-06T17:16:14,307 Given no hashes to check 1 links for project 'bioontologies': discarding no candidates 2026-07-06T17:16:14,326 Collecting bioontologies==0.8.0 2026-07-06T17:16:14,328 Created temporary directory: /tmp/pip-unpack-9kf0n4tn 2026-07-06T17:16:14,555 Downloading bioontologies-0.8.0.tar.gz (49 kB) 2026-07-06T17:16:14,676 Added bioontologies==0.8.0 from https://files.pythonhosted.org/packages/66/55/ff9672b82e34bd241dceec5eea7dec066c346b8d15623735bc7c175f1628/bioontologies-0.8.0.tar.gz to build tracker '/tmp/pip-build-tracker-oedwvbuq' 2026-07-06T17:16:14,684 Created temporary directory: /tmp/pip-build-env-u_n7k5qq 2026-07-06T17:16:14,689 Installing build dependencies: started 2026-07-06T17:16:14,690 Running command pip subprocess to install build dependencies 2026-07-06T17:16:15,871 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-07-06T17:16:16,293 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-06T17:16:16,316 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-06T17:16:18,117 Collecting setuptools 2026-07-06T17:16:18,137 Using cached setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-06T17:16:18,491 Collecting wheel 2026-07-06T17:16:18,492 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-07-06T17:16:18,514 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-07-06T17:16:18,701 Collecting packaging>=24.0 2026-07-06T17:16:18,702 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-07-06T17:16:18,715 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-07-06T17:16:18,906 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-07-06T17:16:18,927 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-06T17:16:18,947 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-07-06T17:16:18,972 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-06T17:16:21,684 Installing collected packages: setuptools, packaging, wheel 2026-07-06T17:16:25,073 Creating /tmp/pip-build-env-u_n7k5qq/overlay/local/bin 2026-07-06T17:16:25,075 changing mode of /tmp/pip-build-env-u_n7k5qq/overlay/local/bin/wheel to 755 2026-07-06T17:16:25,096 Successfully installed packaging-26.2 setuptools-83.0.0 wheel-0.47.0 2026-07-06T17:16:25,379 Installing build dependencies: finished with status 'done' 2026-07-06T17:16:25,385 Getting requirements to build wheel: started 2026-07-06T17:16:25,386 Running command Getting requirements to build wheel 2026-07-06T17:16:26,001 /tmp/pip-build-env-u_n7k5qq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T17:16:26,001 !! 2026-07-06T17:16:26,002 ******************************************************************************** 2026-07-06T17:16:26,002 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T17:16:26,003 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T17:16:26,004 or your builds will no longer be supported. 2026-07-06T17:16:26,005 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T17:16:26,005 ******************************************************************************** 2026-07-06T17:16:26,006 !! 2026-07-06T17:16:26,006 corresp(dist, value, root_dir) 2026-07-06T17:16:26,080 /tmp/pip-build-env-u_n7k5qq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-06T17:16:26,080 !! 2026-07-06T17:16:26,081 ******************************************************************************** 2026-07-06T17:16:26,082 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-06T17:16:26,083 License :: OSI Approved :: MIT License 2026-07-06T17:16:26,084 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T17:16:26,085 ******************************************************************************** 2026-07-06T17:16:26,086 !! 2026-07-06T17:16:26,087 dist._finalize_license_expression() 2026-07-06T17:16:26,088 /tmp/pip-build-env-u_n7k5qq/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-06T17:16:26,088 !! 2026-07-06T17:16:26,089 ******************************************************************************** 2026-07-06T17:16:26,090 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-06T17:16:26,091 License :: OSI Approved :: MIT License 2026-07-06T17:16:26,092 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T17:16:26,093 ******************************************************************************** 2026-07-06T17:16:26,094 !! 2026-07-06T17:16:26,095 self._finalize_license_expression() 2026-07-06T17:16:26,095 running egg_info 2026-07-06T17:16:26,098 writing src/bioontologies.egg-info/PKG-INFO 2026-07-06T17:16:26,104 writing dependency_links to src/bioontologies.egg-info/dependency_links.txt 2026-07-06T17:16:26,106 writing entry points to src/bioontologies.egg-info/entry_points.txt 2026-07-06T17:16:26,109 writing requirements to src/bioontologies.egg-info/requires.txt 2026-07-06T17:16:26,110 writing top-level names to src/bioontologies.egg-info/top_level.txt 2026-07-06T17:16:26,136 reading manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2026-07-06T17:16:26,140 reading manifest template 'MANIFEST.in' 2026-07-06T17:16:26,144 no previously-included directories found matching 'scripts' 2026-07-06T17:16:26,145 no previously-included directories found matching 'notebooks' 2026-07-06T17:16:26,146 no previously-included directories found matching 'tests/.pytest_cache' 2026-07-06T17:16:26,146 no previously-included directories found matching 'docs' 2026-07-06T17:16:26,148 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-07-06T17:16:26,148 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-07-06T17:16:26,149 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-07-06T17:16:26,150 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2026-07-06T17:16:26,151 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-07-06T17:16:26,152 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2026-07-06T17:16:26,153 warning: no previously-included files matching '.idea/**' found anywhere in distribution 2026-07-06T17:16:26,154 warning: no previously-included files found matching 'tox.ini' 2026-07-06T17:16:26,154 warning: no previously-included files found matching '.readthedocs.yml' 2026-07-06T17:16:26,155 warning: no previously-included files found matching '.cruft.json' 2026-07-06T17:16:26,155 adding license file 'LICENSE' 2026-07-06T17:16:26,159 writing manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2026-07-06T17:16:26,261 Getting requirements to build wheel: finished with status 'done' 2026-07-06T17:16:26,265 Created temporary directory: /tmp/pip-modern-metadata-ygrb4x9d 2026-07-06T17:16:26,267 Preparing metadata (pyproject.toml): started 2026-07-06T17:16:26,268 Running command Preparing metadata (pyproject.toml) 2026-07-06T17:16:26,836 /tmp/pip-build-env-u_n7k5qq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T17:16:26,837 !! 2026-07-06T17:16:26,838 ******************************************************************************** 2026-07-06T17:16:26,838 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T17:16:26,840 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T17:16:26,840 or your builds will no longer be supported. 2026-07-06T17:16:26,842 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T17:16:26,842 ******************************************************************************** 2026-07-06T17:16:26,844 !! 2026-07-06T17:16:26,844 corresp(dist, value, root_dir) 2026-07-06T17:16:26,916 /tmp/pip-build-env-u_n7k5qq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-06T17:16:26,917 !! 2026-07-06T17:16:26,918 ******************************************************************************** 2026-07-06T17:16:26,919 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-06T17:16:26,920 License :: OSI Approved :: MIT License 2026-07-06T17:16:26,921 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T17:16:26,922 ******************************************************************************** 2026-07-06T17:16:26,923 !! 2026-07-06T17:16:26,923 dist._finalize_license_expression() 2026-07-06T17:16:26,924 /tmp/pip-build-env-u_n7k5qq/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-06T17:16:26,925 !! 2026-07-06T17:16:26,926 ******************************************************************************** 2026-07-06T17:16:26,927 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-06T17:16:26,928 License :: OSI Approved :: MIT License 2026-07-06T17:16:26,929 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T17:16:26,929 ******************************************************************************** 2026-07-06T17:16:26,930 !! 2026-07-06T17:16:26,931 self._finalize_license_expression() 2026-07-06T17:16:26,931 running dist_info 2026-07-06T17:16:26,941 creating /tmp/pip-modern-metadata-ygrb4x9d/bioontologies.egg-info 2026-07-06T17:16:26,942 writing /tmp/pip-modern-metadata-ygrb4x9d/bioontologies.egg-info/PKG-INFO 2026-07-06T17:16:26,947 writing dependency_links to /tmp/pip-modern-metadata-ygrb4x9d/bioontologies.egg-info/dependency_links.txt 2026-07-06T17:16:26,949 writing entry points to /tmp/pip-modern-metadata-ygrb4x9d/bioontologies.egg-info/entry_points.txt 2026-07-06T17:16:26,951 writing requirements to /tmp/pip-modern-metadata-ygrb4x9d/bioontologies.egg-info/requires.txt 2026-07-06T17:16:26,952 writing top-level names to /tmp/pip-modern-metadata-ygrb4x9d/bioontologies.egg-info/top_level.txt 2026-07-06T17:16:26,953 writing manifest file '/tmp/pip-modern-metadata-ygrb4x9d/bioontologies.egg-info/SOURCES.txt' 2026-07-06T17:16:26,975 reading manifest file '/tmp/pip-modern-metadata-ygrb4x9d/bioontologies.egg-info/SOURCES.txt' 2026-07-06T17:16:26,977 reading manifest template 'MANIFEST.in' 2026-07-06T17:16:26,981 no previously-included directories found matching 'scripts' 2026-07-06T17:16:26,981 no previously-included directories found matching 'notebooks' 2026-07-06T17:16:26,982 no previously-included directories found matching 'tests/.pytest_cache' 2026-07-06T17:16:26,983 no previously-included directories found matching 'docs' 2026-07-06T17:16:26,984 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-07-06T17:16:26,984 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-07-06T17:16:26,985 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-07-06T17:16:26,986 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2026-07-06T17:16:26,986 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-07-06T17:16:26,987 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2026-07-06T17:16:26,987 warning: no previously-included files matching '.idea/**' found anywhere in distribution 2026-07-06T17:16:26,988 warning: no previously-included files found matching 'tox.ini' 2026-07-06T17:16:26,989 warning: no previously-included files found matching '.readthedocs.yml' 2026-07-06T17:16:26,990 warning: no previously-included files found matching '.cruft.json' 2026-07-06T17:16:26,990 adding license file 'LICENSE' 2026-07-06T17:16:26,993 writing manifest file '/tmp/pip-modern-metadata-ygrb4x9d/bioontologies.egg-info/SOURCES.txt' 2026-07-06T17:16:26,994 creating '/tmp/pip-modern-metadata-ygrb4x9d/bioontologies-0.8.0.dist-info' 2026-07-06T17:16:27,117 Preparing metadata (pyproject.toml): finished with status 'done' 2026-07-06T17:16:27,123 Source in /tmp/pip-wheel-tpvftubv/bioontologies_d41c6e3fd4424fdaa8302740ded7e1a9 has version 0.8.0, which satisfies requirement bioontologies==0.8.0 from https://files.pythonhosted.org/packages/66/55/ff9672b82e34bd241dceec5eea7dec066c346b8d15623735bc7c175f1628/bioontologies-0.8.0.tar.gz 2026-07-06T17:16:27,124 Removed bioontologies==0.8.0 from https://files.pythonhosted.org/packages/66/55/ff9672b82e34bd241dceec5eea7dec066c346b8d15623735bc7c175f1628/bioontologies-0.8.0.tar.gz from build tracker '/tmp/pip-build-tracker-oedwvbuq' 2026-07-06T17:16:27,131 Created temporary directory: /tmp/pip-unpack-p_rasntb 2026-07-06T17:16:27,132 Building wheels for collected packages: bioontologies 2026-07-06T17:16:27,136 Created temporary directory: /tmp/pip-wheel-lmkq4mhc 2026-07-06T17:16:27,137 Destination directory: /tmp/pip-wheel-lmkq4mhc 2026-07-06T17:16:27,140 Building wheel for bioontologies (pyproject.toml): started 2026-07-06T17:16:27,141 Running command Building wheel for bioontologies (pyproject.toml) 2026-07-06T17:16:27,696 /tmp/pip-build-env-u_n7k5qq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T17:16:27,697 !! 2026-07-06T17:16:27,698 ******************************************************************************** 2026-07-06T17:16:27,698 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T17:16:27,699 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T17:16:27,700 or your builds will no longer be supported. 2026-07-06T17:16:27,701 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T17:16:27,701 ******************************************************************************** 2026-07-06T17:16:27,702 !! 2026-07-06T17:16:27,702 corresp(dist, value, root_dir) 2026-07-06T17:16:27,768 /tmp/pip-build-env-u_n7k5qq/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-06T17:16:27,768 !! 2026-07-06T17:16:27,769 ******************************************************************************** 2026-07-06T17:16:27,770 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-06T17:16:27,771 License :: OSI Approved :: MIT License 2026-07-06T17:16:27,772 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T17:16:27,773 ******************************************************************************** 2026-07-06T17:16:27,774 !! 2026-07-06T17:16:27,775 dist._finalize_license_expression() 2026-07-06T17:16:27,776 /tmp/pip-build-env-u_n7k5qq/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-06T17:16:27,776 !! 2026-07-06T17:16:27,777 ******************************************************************************** 2026-07-06T17:16:27,778 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-06T17:16:27,779 License :: OSI Approved :: MIT License 2026-07-06T17:16:27,781 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T17:16:27,781 ******************************************************************************** 2026-07-06T17:16:27,782 !! 2026-07-06T17:16:27,783 self._finalize_license_expression() 2026-07-06T17:16:27,783 running bdist_wheel 2026-07-06T17:16:27,793 running build 2026-07-06T17:16:27,794 running build_py 2026-07-06T17:16:27,800 creating build/lib/bioontologies 2026-07-06T17:16:27,803 copying src/bioontologies/robot.py -> build/lib/bioontologies 2026-07-06T17:16:27,805 copying src/bioontologies/__init__.py -> build/lib/bioontologies 2026-07-06T17:16:27,807 copying src/bioontologies/ner.py -> build/lib/bioontologies 2026-07-06T17:16:27,809 copying src/bioontologies/gilda_utils.py -> build/lib/bioontologies 2026-07-06T17:16:27,811 copying src/bioontologies/constants.py -> build/lib/bioontologies 2026-07-06T17:16:27,813 copying src/bioontologies/cli.py -> build/lib/bioontologies 2026-07-06T17:16:27,815 copying src/bioontologies/version.py -> build/lib/bioontologies 2026-07-06T17:16:27,817 copying src/bioontologies/__main__.py -> build/lib/bioontologies 2026-07-06T17:16:27,819 copying src/bioontologies/obograph.py -> build/lib/bioontologies 2026-07-06T17:16:27,822 creating build/lib/bioontologies/upgrade 2026-07-06T17:16:27,823 copying src/bioontologies/upgrade/__init__.py -> build/lib/bioontologies/upgrade 2026-07-06T17:16:27,825 copying src/bioontologies/upgrade/import_debio.py -> build/lib/bioontologies/upgrade 2026-07-06T17:16:27,828 creating build/lib/bioontologies/relations 2026-07-06T17:16:27,828 copying src/bioontologies/relations/__init__.py -> build/lib/bioontologies/relations 2026-07-06T17:16:27,830 copying src/bioontologies/relations/api.py -> build/lib/bioontologies/relations 2026-07-06T17:16:27,832 running egg_info 2026-07-06T17:16:27,842 writing src/bioontologies.egg-info/PKG-INFO 2026-07-06T17:16:27,846 writing dependency_links to src/bioontologies.egg-info/dependency_links.txt 2026-07-06T17:16:27,848 writing entry points to src/bioontologies.egg-info/entry_points.txt 2026-07-06T17:16:27,850 writing requirements to src/bioontologies.egg-info/requires.txt 2026-07-06T17:16:27,851 writing top-level names to src/bioontologies.egg-info/top_level.txt 2026-07-06T17:16:27,865 reading manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2026-07-06T17:16:27,868 reading manifest template 'MANIFEST.in' 2026-07-06T17:16:27,872 no previously-included directories found matching 'scripts' 2026-07-06T17:16:27,873 no previously-included directories found matching 'notebooks' 2026-07-06T17:16:27,874 no previously-included directories found matching 'tests/.pytest_cache' 2026-07-06T17:16:27,874 no previously-included directories found matching 'docs' 2026-07-06T17:16:27,875 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-07-06T17:16:27,876 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-07-06T17:16:27,877 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-07-06T17:16:27,877 warning: no previously-included files matching '*.dylib' found anywhere in distribution 2026-07-06T17:16:27,878 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-07-06T17:16:27,879 warning: no previously-included files matching '*.gpickle' found anywhere in distribution 2026-07-06T17:16:27,879 warning: no previously-included files matching '.idea/**' found anywhere in distribution 2026-07-06T17:16:27,880 warning: no previously-included files found matching 'tox.ini' 2026-07-06T17:16:27,881 warning: no previously-included files found matching '.readthedocs.yml' 2026-07-06T17:16:27,882 warning: no previously-included files found matching '.cruft.json' 2026-07-06T17:16:27,882 adding license file 'LICENSE' 2026-07-06T17:16:27,885 writing manifest file 'src/bioontologies.egg-info/SOURCES.txt' 2026-07-06T17:16:27,891 copying src/bioontologies/py.typed -> build/lib/bioontologies 2026-07-06T17:16:27,897 copying src/bioontologies/upgrade/data.tsv -> build/lib/bioontologies/upgrade 2026-07-06T17:16:27,900 copying src/bioontologies/relations/data.json -> build/lib/bioontologies/relations 2026-07-06T17:16:27,905 copying src/bioontologies/relations/data_owl.json -> build/lib/bioontologies/relations 2026-07-06T17:16:27,907 copying src/bioontologies/relations/data_rdf.json -> build/lib/bioontologies/relations 2026-07-06T17:16:27,910 copying src/bioontologies/relations/data_rdfs.json -> build/lib/bioontologies/relations 2026-07-06T17:16:27,922 installing to build/bdist.linux-armv7l/wheel 2026-07-06T17:16:27,923 running install 2026-07-06T17:16:27,946 running install_lib 2026-07-06T17:16:27,952 creating build/bdist.linux-armv7l/wheel 2026-07-06T17:16:27,954 creating build/bdist.linux-armv7l/wheel/bioontologies 2026-07-06T17:16:27,955 copying build/lib/bioontologies/robot.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2026-07-06T17:16:27,958 copying build/lib/bioontologies/__init__.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2026-07-06T17:16:27,960 copying build/lib/bioontologies/ner.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2026-07-06T17:16:27,962 copying build/lib/bioontologies/py.typed -> build/bdist.linux-armv7l/wheel/./bioontologies 2026-07-06T17:16:27,963 copying build/lib/bioontologies/gilda_utils.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2026-07-06T17:16:27,965 copying build/lib/bioontologies/constants.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2026-07-06T17:16:27,967 copying build/lib/bioontologies/cli.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2026-07-06T17:16:27,968 copying build/lib/bioontologies/version.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2026-07-06T17:16:27,970 copying build/lib/bioontologies/__main__.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2026-07-06T17:16:27,972 creating build/bdist.linux-armv7l/wheel/bioontologies/upgrade 2026-07-06T17:16:27,973 copying build/lib/bioontologies/upgrade/__init__.py -> build/bdist.linux-armv7l/wheel/./bioontologies/upgrade 2026-07-06T17:16:27,975 copying build/lib/bioontologies/upgrade/import_debio.py -> build/bdist.linux-armv7l/wheel/./bioontologies/upgrade 2026-07-06T17:16:27,976 copying build/lib/bioontologies/upgrade/data.tsv -> build/bdist.linux-armv7l/wheel/./bioontologies/upgrade 2026-07-06T17:16:27,979 copying build/lib/bioontologies/obograph.py -> build/bdist.linux-armv7l/wheel/./bioontologies 2026-07-06T17:16:27,982 creating build/bdist.linux-armv7l/wheel/bioontologies/relations 2026-07-06T17:16:27,983 copying build/lib/bioontologies/relations/__init__.py -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2026-07-06T17:16:27,985 copying build/lib/bioontologies/relations/data.json -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2026-07-06T17:16:27,989 copying build/lib/bioontologies/relations/data_rdfs.json -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2026-07-06T17:16:27,990 copying build/lib/bioontologies/relations/data_rdf.json -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2026-07-06T17:16:27,992 copying build/lib/bioontologies/relations/data_owl.json -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2026-07-06T17:16:27,994 copying build/lib/bioontologies/relations/api.py -> build/bdist.linux-armv7l/wheel/./bioontologies/relations 2026-07-06T17:16:27,996 running install_egg_info 2026-07-06T17:16:28,001 Copying src/bioontologies.egg-info to build/bdist.linux-armv7l/wheel/./bioontologies-0.8.0-py3.11.egg-info 2026-07-06T17:16:28,012 running install_scripts 2026-07-06T17:16:28,023 creating build/bdist.linux-armv7l/wheel/bioontologies-0.8.0.dist-info/WHEEL 2026-07-06T17:16:28,026 creating '/tmp/pip-wheel-lmkq4mhc/.tmp-nhwb16uv/bioontologies-0.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-07-06T17:16:28,028 adding 'bioontologies/__init__.py' 2026-07-06T17:16:28,029 adding 'bioontologies/__main__.py' 2026-07-06T17:16:28,031 adding 'bioontologies/cli.py' 2026-07-06T17:16:28,032 adding 'bioontologies/constants.py' 2026-07-06T17:16:28,034 adding 'bioontologies/gilda_utils.py' 2026-07-06T17:16:28,035 adding 'bioontologies/ner.py' 2026-07-06T17:16:28,040 adding 'bioontologies/obograph.py' 2026-07-06T17:16:28,041 adding 'bioontologies/py.typed' 2026-07-06T17:16:28,043 adding 'bioontologies/robot.py' 2026-07-06T17:16:28,045 adding 'bioontologies/version.py' 2026-07-06T17:16:28,046 adding 'bioontologies/relations/__init__.py' 2026-07-06T17:16:28,048 adding 'bioontologies/relations/api.py' 2026-07-06T17:16:28,055 adding 'bioontologies/relations/data.json' 2026-07-06T17:16:28,057 adding 'bioontologies/relations/data_owl.json' 2026-07-06T17:16:28,058 adding 'bioontologies/relations/data_rdf.json' 2026-07-06T17:16:28,059 adding 'bioontologies/relations/data_rdfs.json' 2026-07-06T17:16:28,061 adding 'bioontologies/upgrade/__init__.py' 2026-07-06T17:16:28,063 adding 'bioontologies/upgrade/data.tsv' 2026-07-06T17:16:28,064 adding 'bioontologies/upgrade/import_debio.py' 2026-07-06T17:16:28,067 adding 'bioontologies-0.8.0.dist-info/licenses/LICENSE' 2026-07-06T17:16:28,069 adding 'bioontologies-0.8.0.dist-info/METADATA' 2026-07-06T17:16:28,071 adding 'bioontologies-0.8.0.dist-info/WHEEL' 2026-07-06T17:16:28,072 adding 'bioontologies-0.8.0.dist-info/entry_points.txt' 2026-07-06T17:16:28,073 adding 'bioontologies-0.8.0.dist-info/top_level.txt' 2026-07-06T17:16:28,074 adding 'bioontologies-0.8.0.dist-info/RECORD' 2026-07-06T17:16:28,076 removing build/bdist.linux-armv7l/wheel 2026-07-06T17:16:28,184 Building wheel for bioontologies (pyproject.toml): finished with status 'done' 2026-07-06T17:16:28,190 Created wheel for bioontologies: filename=bioontologies-0.8.0-py3-none-any.whl size=46993 sha256=37aaabffc21174ebc803ad12f2640b81fb4916ce635c471e1cc31a0dd70dec08 2026-07-06T17:16:28,191 Stored in directory: /tmp/pip-ephem-wheel-cache-tngj3b08/wheels/b2/66/b8/d7726e12d135ba564e3dc2443847c062348522215219d6f4d8 2026-07-06T17:16:28,205 Successfully built bioontologies 2026-07-06T17:16:28,209 Removed build tracker: '/tmp/pip-build-tracker-oedwvbuq'