2026-07-06T21:47:19,188 Created temporary directory: /tmp/pip-ephem-wheel-cache-t6qpz7yj 2026-07-06T21:47:19,190 Created temporary directory: /tmp/pip-build-tracker-eomy6j10 2026-07-06T21:47:19,191 Initialized build tracking at /tmp/pip-build-tracker-eomy6j10 2026-07-06T21:47:19,191 Created build tracker: /tmp/pip-build-tracker-eomy6j10 2026-07-06T21:47:19,192 Entered build tracker: /tmp/pip-build-tracker-eomy6j10 2026-07-06T21:47:19,193 Created temporary directory: /tmp/pip-wheel-lgmsnppm 2026-07-06T21:47:19,196 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b8-py3-none-any.whl#sha256=eeb1d3f9855d002deb07c4eedb6e1ad89779db86dbcfec3d04ee8e03385c0df5 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,764 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b7-py3-none-any.whl#sha256=9b5a7d175d0662fb4b210ece019e2d38397f02a8d1c5adf51442cd6dc77c0a52 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,765 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b6-py3-none-any.whl#sha256=2d45787d6e69a1317464b855967853e3ac7a22b3b27f17e8a636753040a93035 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,766 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b5-py3-none-any.whl#sha256=a60f524330ca169f9e3c15f5c35c00b8d0144fbfa2127fd8172ecbf45a823680 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,766 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b4-py3-none-any.whl#sha256=d419905e626e6790ed00972938fb269e5be969b77ac02c2ec581431c14ca9c06 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,767 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b3-py3-none-any.whl#sha256=937521bdd7ccf2f2b88c1d6a1c9e70265dc1efd65495c57d291ae560bebdd535 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,767 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b2-py3-none-any.whl#sha256=dc34830c4791cef76913516e175f6c69d921dd26db0b2c11395e64bcfff4354e (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,768 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.3b0-py3-none-any.whl#sha256=c74c0e54143586e25d9c1934b2d61f28330897547f50360edf68725306cd0d48 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,769 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.2b0-py3-none-any.whl#sha256=a3c81606d051b477612e1eeed371682fdb4d1fa86aa41c28ff73dc8f44003e14 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,769 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3.1b0-py3-none-any.whl#sha256=5477ba6a7bdacacbd72882e68d7eaceb2a24f32ab32007d2fe70bdab95a2df63 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,770 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-19.3b0-py3-none-any.whl#sha256=e484efa82b28bf099ece04ecdc9a642dafd23ffc44ae414d77989f9c576bb96a (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,770 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0b1-py3-none-any.whl#sha256=6d36929f4411ac1ff69548230bf74d77c4cc75e68aead196203186fb26094e49 (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,771 Skipping link: No binaries permitted for scipion-em-xmipp: https://archive1.piwheels.org/simple/scipion-em-xmipp/scipion_em_xmipp-1.0.0a1-py3-none-any.whl#sha256=c088df2fbccef99c06f812beb1584e487375276c582430f35a8a78620ea3a41f (from https://www.piwheels.org/simple/scipion-em-xmipp/) 2026-07-06T21:47:19,771 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-xmipp/ 2026-07-06T21:47:19,772 Skipping link: not a file: https://pypi.org/simple/scipion-em-xmipp/ 2026-07-06T21:47:19,797 Given no hashes to check 1 links for project 'scipion-em-xmipp': discarding no candidates 2026-07-06T21:47:19,814 Collecting scipion-em-xmipp==29.0.1 2026-07-06T21:47:19,817 Created temporary directory: /tmp/pip-unpack-srwuht8q 2026-07-06T21:47:20,052 Downloading scipion_em_xmipp-29.0.1.tar.gz (1.9 MB) 2026-07-06T21:47:21,082 Added scipion-em-xmipp==29.0.1 from https://files.pythonhosted.org/packages/1c/37/9b4d0ad572d5a6895ff3c5da7a6935e97cb9c7aace30ad95d70f2eb2088e/scipion_em_xmipp-29.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-eomy6j10' 2026-07-06T21:47:21,086 Created temporary directory: /tmp/pip-build-env-x1rjyifo 2026-07-06T21:47:21,091 Installing build dependencies: started 2026-07-06T21:47:21,092 Running command pip subprocess to install build dependencies 2026-07-06T21:47:22,225 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-07-06T21:47:22,696 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-06T21:47:22,719 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-06T21:47:24,526 Collecting setuptools 2026-07-06T21:47:24,546 Using cached setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-06T21:47:27,453 Installing collected packages: setuptools 2026-07-06T21:47:30,661 Successfully installed setuptools-83.0.0 2026-07-06T21:47:30,931 Installing build dependencies: finished with status 'done' 2026-07-06T21:47:30,937 Getting requirements to build wheel: started 2026-07-06T21:47:30,938 Running command Getting requirements to build wheel 2026-07-06T21:47:31,548 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-07-06T21:47:31,548 `flat-layout` detected -- analysing . 2026-07-06T21:47:31,572 discovered packages -- ['xmipp3', 'xmipp3.viewers', 'xmipp3.tests', 'xmipp3.protocols', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests', 'xmipp3.legacy.protocols'] 2026-07-06T21:47:31,577 /tmp/pip-build-env-x1rjyifo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T21:47:31,577 !! 2026-07-06T21:47:31,578 ******************************************************************************** 2026-07-06T21:47:31,579 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T21:47:31,580 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T21:47:31,581 or your builds will no longer be supported. 2026-07-06T21:47:31,582 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T21:47:31,582 ******************************************************************************** 2026-07-06T21:47:31,583 !! 2026-07-06T21:47:31,584 corresp(dist, value, root_dir) 2026-07-06T21:47:31,664 running egg_info 2026-07-06T21:47:31,670 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-07-06T21:47:31,674 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-07-06T21:47:31,676 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-07-06T21:47:31,678 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-07-06T21:47:31,679 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-07-06T21:47:31,719 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T21:47:31,734 reading manifest template 'MANIFEST.in' 2026-07-06T21:47:31,737 adding license file 'LICENSE' 2026-07-06T21:47:31,750 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T21:47:31,849 Getting requirements to build wheel: finished with status 'done' 2026-07-06T21:47:31,853 Created temporary directory: /tmp/pip-modern-metadata-7eg0csll 2026-07-06T21:47:31,856 Preparing metadata (pyproject.toml): started 2026-07-06T21:47:31,857 Running command Preparing metadata (pyproject.toml) 2026-07-06T21:47:32,447 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-07-06T21:47:32,448 `flat-layout` detected -- analysing . 2026-07-06T21:47:32,467 discovered packages -- ['xmipp3', 'xmipp3.viewers', 'xmipp3.tests', 'xmipp3.protocols', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests', 'xmipp3.legacy.protocols'] 2026-07-06T21:47:32,471 /tmp/pip-build-env-x1rjyifo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T21:47:32,472 !! 2026-07-06T21:47:32,473 ******************************************************************************** 2026-07-06T21:47:32,473 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T21:47:32,474 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T21:47:32,475 or your builds will no longer be supported. 2026-07-06T21:47:32,476 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T21:47:32,477 ******************************************************************************** 2026-07-06T21:47:32,478 !! 2026-07-06T21:47:32,479 corresp(dist, value, root_dir) 2026-07-06T21:47:32,556 running dist_info 2026-07-06T21:47:32,567 creating /tmp/pip-modern-metadata-7eg0csll/scipion_em_xmipp.egg-info 2026-07-06T21:47:32,567 writing /tmp/pip-modern-metadata-7eg0csll/scipion_em_xmipp.egg-info/PKG-INFO 2026-07-06T21:47:32,571 writing dependency_links to /tmp/pip-modern-metadata-7eg0csll/scipion_em_xmipp.egg-info/dependency_links.txt 2026-07-06T21:47:32,572 writing entry points to /tmp/pip-modern-metadata-7eg0csll/scipion_em_xmipp.egg-info/entry_points.txt 2026-07-06T21:47:32,574 writing requirements to /tmp/pip-modern-metadata-7eg0csll/scipion_em_xmipp.egg-info/requires.txt 2026-07-06T21:47:32,575 writing top-level names to /tmp/pip-modern-metadata-7eg0csll/scipion_em_xmipp.egg-info/top_level.txt 2026-07-06T21:47:32,577 writing manifest file '/tmp/pip-modern-metadata-7eg0csll/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T21:47:32,612 reading manifest file '/tmp/pip-modern-metadata-7eg0csll/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T21:47:32,614 reading manifest template 'MANIFEST.in' 2026-07-06T21:47:32,617 adding license file 'LICENSE' 2026-07-06T21:47:32,627 writing manifest file '/tmp/pip-modern-metadata-7eg0csll/scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T21:47:32,628 creating '/tmp/pip-modern-metadata-7eg0csll/scipion_em_xmipp-29.0.1.dist-info' 2026-07-06T21:47:32,756 Preparing metadata (pyproject.toml): finished with status 'done' 2026-07-06T21:47:32,761 Source in /tmp/pip-wheel-lgmsnppm/scipion-em-xmipp_c4ef1774f2de4b20ab88b8a78fa05bfe has version 29.0.1, which satisfies requirement scipion-em-xmipp==29.0.1 from https://files.pythonhosted.org/packages/1c/37/9b4d0ad572d5a6895ff3c5da7a6935e97cb9c7aace30ad95d70f2eb2088e/scipion_em_xmipp-29.0.1.tar.gz 2026-07-06T21:47:32,762 Removed scipion-em-xmipp==29.0.1 from https://files.pythonhosted.org/packages/1c/37/9b4d0ad572d5a6895ff3c5da7a6935e97cb9c7aace30ad95d70f2eb2088e/scipion_em_xmipp-29.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-eomy6j10' 2026-07-06T21:47:32,768 Created temporary directory: /tmp/pip-unpack-capg21t6 2026-07-06T21:47:32,768 Building wheels for collected packages: scipion-em-xmipp 2026-07-06T21:47:32,773 Created temporary directory: /tmp/pip-wheel-nujugnui 2026-07-06T21:47:32,773 Destination directory: /tmp/pip-wheel-nujugnui 2026-07-06T21:47:32,775 Building wheel for scipion-em-xmipp (pyproject.toml): started 2026-07-06T21:47:32,777 Running command Building wheel for scipion-em-xmipp (pyproject.toml) 2026-07-06T21:47:33,326 No `packages` or `py_modules` configuration, performing automatic discovery. 2026-07-06T21:47:33,326 `flat-layout` detected -- analysing . 2026-07-06T21:47:33,345 discovered packages -- ['xmipp3', 'xmipp3.viewers', 'xmipp3.tests', 'xmipp3.protocols', 'xmipp3.convert', 'xmipp3.legacy', 'xmipp3.protocols.protocol_preprocess', 'xmipp3.protocols.protocol_projmatch', 'xmipp3.legacy.viewers', 'xmipp3.legacy.tests', 'xmipp3.legacy.protocols'] 2026-07-06T21:47:33,349 /tmp/pip-build-env-x1rjyifo/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-06T21:47:33,350 !! 2026-07-06T21:47:33,351 ******************************************************************************** 2026-07-06T21:47:33,352 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-06T21:47:33,353 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-06T21:47:33,353 or your builds will no longer be supported. 2026-07-06T21:47:33,355 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-06T21:47:33,355 ******************************************************************************** 2026-07-06T21:47:33,356 !! 2026-07-06T21:47:33,357 corresp(dist, value, root_dir) 2026-07-06T21:47:33,425 running bdist_wheel 2026-07-06T21:47:33,443 running build 2026-07-06T21:47:33,443 running build_py 2026-07-06T21:47:33,449 creating build/lib/xmipp3 2026-07-06T21:47:33,452 copying xmipp3/checkProtocolsConf.py -> build/lib/xmipp3 2026-07-06T21:47:33,454 copying xmipp3/programs.py -> build/lib/xmipp3 2026-07-06T21:47:33,457 copying xmipp3/logParser.py -> build/lib/xmipp3 2026-07-06T21:47:33,458 copying xmipp3/constants.py -> build/lib/xmipp3 2026-07-06T21:47:33,460 copying xmipp3/__init__.py -> build/lib/xmipp3 2026-07-06T21:47:33,463 copying xmipp3/version.py -> build/lib/xmipp3 2026-07-06T21:47:33,465 copying xmipp3/bibtex.py -> build/lib/xmipp3 2026-07-06T21:47:33,468 copying xmipp3/protocolsCollectInfo.py -> build/lib/xmipp3 2026-07-06T21:47:33,470 copying xmipp3/wizards.py -> build/lib/xmipp3 2026-07-06T21:47:33,473 copying xmipp3/utils.py -> build/lib/xmipp3 2026-07-06T21:47:33,475 copying xmipp3/base.py -> build/lib/xmipp3 2026-07-06T21:47:33,479 creating build/lib/xmipp3/viewers 2026-07-06T21:47:33,480 copying xmipp3/viewers/viewer_swarm.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,482 copying xmipp3/viewers/viewer_structure_map.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,485 copying xmipp3/viewers/viewer_validate_overfitting.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,487 copying xmipp3/viewers/viewer_resolution_fso.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,491 copying xmipp3/viewers/viewer_resolution_deepres.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,494 copying xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,496 copying xmipp3/viewers/viewer_volume_strain.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,498 copying xmipp3/viewers/viewer_LL_matrix.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,501 copying xmipp3/viewers/viewer_projmatch.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,503 copying xmipp3/viewers/viewer_local_sharpening.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,506 copying xmipp3/viewers/plotter.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,508 copying xmipp3/viewers/viewer.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,510 copying xmipp3/viewers/viewer_volume_subtraction.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,513 copying xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,514 copying xmipp3/viewers/viewer_reconstruct_highres.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,517 copying xmipp3/viewers/viewer_deep_consensus.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,519 copying xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,522 copying xmipp3/viewers/viewer_resolution_bfactor.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,524 copying xmipp3/viewers/viewer_analyze_local_ctf.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,526 copying xmipp3/viewers/viewer_subtract_projection.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,528 copying xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,530 copying xmipp3/viewers/viewer_cl2d_clustering.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,533 copying xmipp3/viewers/viewer_resolution3d.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,536 copying xmipp3/viewers/viewer_validate_fscq.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,539 copying xmipp3/viewers/viewer_ransac.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,541 copying xmipp3/viewers/viewer_eliminate_empty_images.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,544 copying xmipp3/viewers/viewer_dose_analysis.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,546 copying xmipp3/viewers/viewer_validate_nontilt.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,548 copying xmipp3/viewers/__init__.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,550 copying xmipp3/viewers/viewer_movie_alignment.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,553 copying xmipp3/viewers/viewer_normalize_strain.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,555 copying xmipp3/viewers/viewer_volume_consensus.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,557 copying xmipp3/viewers/viewer_resolution_directional.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,559 copying xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,562 copying xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,564 copying xmipp3/viewers/viewer_cl2d.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,567 copying xmipp3/viewers/viewer_ml2d.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,569 copying xmipp3/viewers/viewer_consensus_classes.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,572 copying xmipp3/viewers/viewer_deepEMHancer.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,574 copying xmipp3/viewers/viewer_ctf_consensus.py -> build/lib/xmipp3/viewers 2026-07-06T21:47:33,578 creating build/lib/xmipp3/tests 2026-07-06T21:47:33,580 copying xmipp3/tests/test_protocols_zernike3d.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,582 copying xmipp3/tests/test_protocol_consensus_classes3D.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,585 copying xmipp3/tests/test_protocol_multiple_fsc.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,587 copying xmipp3/tests/test_protocol_split_frames.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,589 copying xmipp3/tests/test_protocols_monores.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,591 copying xmipp3/tests/test_protocols_xmipp_mics.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,594 copying xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,597 copying xmipp3/tests/test_protocol_validate_overfitting.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,599 copying xmipp3/tests/test_protocols_realignment_classes.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,601 copying xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,603 copying xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,606 copying xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,608 copying xmipp3/tests/test_protocols_xmipp_2d.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,612 copying xmipp3/tests/test_protocols_fso.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,615 copying xmipp3/tests/test_protocols_deepres.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,617 copying xmipp3/tests/test_convert_xmipp.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,620 copying xmipp3/tests/test_protocol_likelihood.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,622 copying xmipp3/tests/test_protocols_add_noise.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,625 copying xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,627 copying xmipp3/tests/test_protocols_highres.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,629 copying xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,631 copying xmipp3/tests/test_protocols_localdeblur.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,633 copying xmipp3/tests/test_protocol_monodir.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,635 copying xmipp3/tests/test_protocol_ctf_consensus.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,638 copying xmipp3/tests/test_protocol_simulate_ctf.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,640 copying xmipp3/tests/__init__.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,642 copying xmipp3/tests/test_protocol_validate_fscq.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,644 copying xmipp3/tests/test_protocol_compare_angles.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,646 copying xmipp3/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,649 copying xmipp3/tests/test_protocols_deepcenter_predict.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,650 copying xmipp3/tests/test_protocols_continuousflex.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,653 copying xmipp3/tests/test_protocols_local_defocus.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,656 copying xmipp3/tests/test_protocols_xmipp_3d.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,659 copying xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,662 copying xmipp3/tests/test_protocol_multireference_alignability.py -> build/lib/xmipp3/tests 2026-07-06T21:47:33,667 creating build/lib/xmipp3/protocols 2026-07-06T21:47:33,668 copying xmipp3/protocols/protocol_compute_likelihood.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,671 copying xmipp3/protocols/protocol_write_testC.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,673 copying xmipp3/protocols/protocol_align_volume.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,675 copying xmipp3/protocols/protocol_pick_noise.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,678 copying xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,681 copying xmipp3/protocols/protocol_validate_nontilt.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,684 copying xmipp3/protocols/protocol_screen_particles.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,687 copying xmipp3/protocols/protocol_phantom_create.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,689 copying xmipp3/protocols/protocol_alignPCA_2D.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,692 copying xmipp3/protocols/protocol_kerdensom.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,695 copying xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,698 copying xmipp3/protocols/protocol_screen_deepConsensus.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,703 copying xmipp3/protocols/protocol_particle_pick_pairs.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,705 copying xmipp3/protocols/protocol_multiple_fscs.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,708 copying xmipp3/protocols/protocol_align_volume_and_particles.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,711 copying xmipp3/protocols/protocol_particle_pick_consensus.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,713 copying xmipp3/protocols/protocol_ctf_defocus_group.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,716 copying xmipp3/protocols/protocol_structure_map.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,719 copying xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,722 copying xmipp3/protocols/protocol_movie_split_frames.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,724 copying xmipp3/protocols/protocol_simulate_ctf.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,727 copying xmipp3/protocols/protocol_resolution_bfactor.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,729 copying xmipp3/protocols/protocol_resolution3d.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,732 copying xmipp3/protocols/protocol_write_testP.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,735 copying xmipp3/protocols/protocol_resolution_directional.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,737 copying xmipp3/protocols/protocol_cl2d_clustering.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,740 copying xmipp3/protocols/protocol_compare_angles.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,742 copying xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,745 copying xmipp3/protocols/protocol_deep_hand.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,747 copying xmipp3/protocols/protocol_convert_pdb.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,750 copying xmipp3/protocols/protocol_ctf_consensus.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,754 copying xmipp3/protocols/protocol_generate_reprojections.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,756 copying xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,759 copying xmipp3/protocols/protocol_normalize_strain.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,761 copying xmipp3/protocols/protocol_classes_2d_mapping.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,764 copying xmipp3/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,767 copying xmipp3/protocols/protocol_reconstruct_fourier.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,770 copying xmipp3/protocols/protocol_volume_local_adjust.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,772 copying xmipp3/protocols/protocol_cl2d.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,777 copying xmipp3/protocols/protocol_extract_particles.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,782 copying xmipp3/protocols/protocol_movie_dose_analysis.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,785 copying xmipp3/protocols/protocol_resolution_deepres.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,788 copying xmipp3/protocols/protocol_helical_parameters.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,792 copying xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,796 copying xmipp3/protocols/protocol_ransac.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,799 copying xmipp3/protocols/protocol_trigger_data.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,801 copying xmipp3/protocols/protocol_particle_pick_automatic.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,804 copying xmipp3/protocols/protocol_cl2d_align.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,807 copying xmipp3/protocols/protocol_analyze_local_ctf.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,810 copying xmipp3/protocols/protocol_core_analysis.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,812 copying xmipp3/protocols/protocol_consensus_classes.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,816 copying xmipp3/protocols/protocol_compare_reprojections.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,819 copying xmipp3/protocols/protocol_apply_zernike3d.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,821 copying xmipp3/protocols/protocol_random_conical_tilt.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,824 copying xmipp3/protocols/protocol_volume_strain.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,827 copying xmipp3/protocols/protocol_volume_consensus.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,829 copying xmipp3/protocols/protocol_movie_max_shift.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,832 copying xmipp3/protocols/protocol_volume_adjust_sub.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,835 copying xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,838 copying xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,841 copying xmipp3/protocols/protocol_reconstruct_highres.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,846 copying xmipp3/protocols/protocol_rotational_symmetry.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,849 copying xmipp3/protocols/protocol_volume_local_sharpening.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,852 copying xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,854 copying xmipp3/protocols/protocol_shift_particles.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,857 copying xmipp3/protocols/protocol_ml2d.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,860 copying xmipp3/protocols/protocol_validate_overfitting.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,864 copying xmipp3/protocols/__init__.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,866 copying xmipp3/protocols/protocol_preprocess_micrographs.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,869 copying xmipp3/protocols/protocol_particle_pick.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,872 copying xmipp3/protocols/protocol_denoise_particles.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,874 copying xmipp3/protocols/protocol_local_ctf.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,877 copying xmipp3/protocols/protocol_consensus_local_ctf.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,880 copying xmipp3/protocols/protocol_reconstruct_swarm.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,884 copying xmipp3/protocols/protocol_create_gallery.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,886 copying xmipp3/protocols/protocol_reconstruct_significant.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,892 copying xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,898 copying xmipp3/protocols/protocol_shift_volume.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,900 copying xmipp3/protocols/protocol_validate_fscq.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,904 copying xmipp3/protocols/protocol_extract_particles_pairs.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,908 copying xmipp3/protocols/protocol_angular_graph_consistency.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,911 copying xmipp3/protocols/protocol_ctf_correct_phase.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,913 copying xmipp3/protocols/protocol_break_symmetry.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,916 copying xmipp3/protocols/protocol_tilt_analysis.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,919 copying xmipp3/protocols/protocol_movie_gain.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,923 copying xmipp3/protocols/protocol_multireference_alignability.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,926 copying xmipp3/protocols/protocol_ctf_micrographs.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,929 copying xmipp3/protocols/protocol_rotate_volume.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,932 copying xmipp3/protocols/protocol_resolution_fso.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,935 copying xmipp3/protocols/protocol_eliminate_empty_images.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,938 copying xmipp3/protocols/protocol_apply_alignment.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,940 copying xmipp3/protocols/protocol_center_particles.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,943 copying xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,946 copying xmipp3/protocols/protocol_flexalign.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,949 copying xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,952 copying xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/lib/xmipp3/protocols 2026-07-06T21:47:33,956 creating build/lib/xmipp3/convert 2026-07-06T21:47:33,957 copying xmipp3/convert/dataimport.py -> build/lib/xmipp3/convert 2026-07-06T21:47:33,960 copying xmipp3/convert/convert.py -> build/lib/xmipp3/convert 2026-07-06T21:47:33,964 copying xmipp3/convert/__init__.py -> build/lib/xmipp3/convert 2026-07-06T21:47:33,966 copying xmipp3/convert/io_coordinates.py -> build/lib/xmipp3/convert 2026-07-06T21:47:33,969 creating build/lib/xmipp3/legacy 2026-07-06T21:47:33,970 copying xmipp3/legacy/__init__.py -> build/lib/xmipp3/legacy 2026-07-06T21:47:33,973 creating build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:33,974 copying xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:33,977 copying xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:33,979 copying xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:33,983 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:33,986 copying xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:33,988 copying xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:33,992 copying xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:33,995 copying xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:33,999 copying xmipp3/protocols/protocol_preprocess/__init__.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,001 copying xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,004 copying xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,007 copying xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/lib/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,010 creating build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,011 copying xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,015 copying xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,018 copying xmipp3/protocols/protocol_projmatch/__init__.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,020 copying xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,023 copying xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/lib/xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,026 creating build/lib/xmipp3/legacy/viewers 2026-07-06T21:47:34,027 copying xmipp3/legacy/viewers/viewer_split_volume.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T21:47:34,029 copying xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T21:47:34,031 copying xmipp3/legacy/viewers/viewer_mltomo.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T21:47:34,033 copying xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T21:47:34,036 copying xmipp3/legacy/viewers/viewer_solid_angles.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T21:47:34,038 copying xmipp3/legacy/viewers/viewer_deep_align.py -> build/lib/xmipp3/legacy/viewers 2026-07-06T21:47:34,041 creating build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,042 copying xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,044 copying xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,048 copying xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,050 copying xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,052 copying xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,054 copying xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,056 copying xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,058 copying xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,060 copying xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,062 copying xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,065 copying xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/lib/xmipp3/legacy/tests 2026-07-06T21:47:34,068 creating build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,069 copying xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,073 copying xmipp3/legacy/protocols/protocol_split_volume.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,076 copying xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,080 copying xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,084 copying xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,086 copying xmipp3/legacy/protocols/protocol_deep_align.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,089 copying xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,092 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,095 copying xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,097 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,100 copying xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,102 copying xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,105 copying xmipp3/legacy/protocols/protocol_deep_center.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,107 copying xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,110 copying xmipp3/legacy/protocols/protocol_solid_angles.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,112 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,115 copying xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,117 copying xmipp3/legacy/protocols/protocol_mltomo.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,120 copying xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,123 copying xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,126 copying xmipp3/legacy/protocols/protocol_movie_average.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,128 copying xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,130 copying xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,133 copying xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,135 copying xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,137 copying xmipp3/legacy/protocols/__init__.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,139 copying xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,143 copying xmipp3/legacy/protocols/protocol_enrich.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,146 copying xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/lib/xmipp3/legacy/protocols 2026-07-06T21:47:34,149 running egg_info 2026-07-06T21:47:34,159 writing scipion_em_xmipp.egg-info/PKG-INFO 2026-07-06T21:47:34,161 writing dependency_links to scipion_em_xmipp.egg-info/dependency_links.txt 2026-07-06T21:47:34,163 writing entry points to scipion_em_xmipp.egg-info/entry_points.txt 2026-07-06T21:47:34,164 writing requirements to scipion_em_xmipp.egg-info/requires.txt 2026-07-06T21:47:34,165 writing top-level names to scipion_em_xmipp.egg-info/top_level.txt 2026-07-06T21:47:34,192 reading manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T21:47:34,207 reading manifest template 'MANIFEST.in' 2026-07-06T21:47:34,210 adding license file 'LICENSE' 2026-07-06T21:47:34,223 writing manifest file 'scipion_em_xmipp.egg-info/SOURCES.txt' 2026-07-06T21:47:34,234 copying xmipp3/protocols.conf -> build/lib/xmipp3 2026-07-06T21:47:34,237 copying xmipp3/xmipp_logo.png -> build/lib/xmipp3 2026-07-06T21:47:34,241 copying xmipp3/xmipp_logo_devel.png -> build/lib/xmipp3 2026-07-06T21:47:34,277 installing to build/bdist.linux-armv7l/wheel 2026-07-06T21:47:34,277 running install 2026-07-06T21:47:34,300 running install_lib 2026-07-06T21:47:34,305 creating build/bdist.linux-armv7l/wheel 2026-07-06T21:47:34,307 creating build/bdist.linux-armv7l/wheel/xmipp3 2026-07-06T21:47:34,310 creating build/bdist.linux-armv7l/wheel/xmipp3/viewers 2026-07-06T21:47:34,311 copying build/lib/xmipp3/viewers/viewer_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,313 copying build/lib/xmipp3/viewers/viewer_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,316 copying build/lib/xmipp3/viewers/viewer_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,318 copying build/lib/xmipp3/viewers/viewer_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,320 copying build/lib/xmipp3/viewers/viewer_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,322 copying build/lib/xmipp3/viewers/viewer_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,325 copying build/lib/xmipp3/viewers/viewer_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,327 copying build/lib/xmipp3/viewers/viewer_LL_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,329 copying build/lib/xmipp3/viewers/viewer_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,332 copying build/lib/xmipp3/viewers/viewer_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,334 copying build/lib/xmipp3/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,336 copying build/lib/xmipp3/viewers/viewer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,338 copying build/lib/xmipp3/viewers/viewer_volume_subtraction.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,341 copying build/lib/xmipp3/viewers/viewer_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,343 copying build/lib/xmipp3/viewers/viewer_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,345 copying build/lib/xmipp3/viewers/viewer_deep_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,347 copying build/lib/xmipp3/viewers/viewer_deep_micrograph_cleaner.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,350 copying build/lib/xmipp3/viewers/viewer_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,352 copying build/lib/xmipp3/viewers/viewer_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,354 copying build/lib/xmipp3/viewers/viewer_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,356 copying build/lib/xmipp3/viewers/viewer_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,359 copying build/lib/xmipp3/viewers/viewer_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,361 copying build/lib/xmipp3/viewers/viewer_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,363 copying build/lib/xmipp3/viewers/viewer_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,366 copying build/lib/xmipp3/viewers/viewer_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,368 copying build/lib/xmipp3/viewers/viewer_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,370 copying build/lib/xmipp3/viewers/viewer_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,372 copying build/lib/xmipp3/viewers/viewer_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,374 copying build/lib/xmipp3/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,376 copying build/lib/xmipp3/viewers/viewer_movie_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,378 copying build/lib/xmipp3/viewers/viewer_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,380 copying build/lib/xmipp3/viewers/viewer_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,382 copying build/lib/xmipp3/viewers/viewer_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,384 copying build/lib/xmipp3/viewers/viewer_pdb_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,387 copying build/lib/xmipp3/viewers/viewer_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,389 copying build/lib/xmipp3/viewers/viewer_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,391 copying build/lib/xmipp3/viewers/viewer_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,393 copying build/lib/xmipp3/viewers/viewer_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,396 copying build/lib/xmipp3/viewers/viewer_deepEMHancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,398 copying build/lib/xmipp3/viewers/viewer_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/viewers 2026-07-06T21:47:34,400 copying build/lib/xmipp3/checkProtocolsConf.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,403 copying build/lib/xmipp3/programs.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,405 copying build/lib/xmipp3/logParser.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,407 copying build/lib/xmipp3/xmipp_logo_devel.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,424 copying build/lib/xmipp3/protocols.conf -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,426 copying build/lib/xmipp3/xmipp_logo.png -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,430 copying build/lib/xmipp3/constants.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,433 creating build/bdist.linux-armv7l/wheel/xmipp3/tests 2026-07-06T21:47:34,434 copying build/lib/xmipp3/tests/test_protocols_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,437 copying build/lib/xmipp3/tests/test_protocol_consensus_classes3D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,439 copying build/lib/xmipp3/tests/test_protocol_multiple_fsc.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,441 copying build/lib/xmipp3/tests/test_protocol_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,443 copying build/lib/xmipp3/tests/test_protocols_monores.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,446 copying build/lib/xmipp3/tests/test_protocols_xmipp_mics.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,449 copying build/lib/xmipp3/tests/test_protocols_xmipp_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,451 copying build/lib/xmipp3/tests/test_protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,453 copying build/lib/xmipp3/tests/test_protocols_realignment_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,455 copying build/lib/xmipp3/tests/test_protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,457 copying build/lib/xmipp3/tests/test_protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,460 copying build/lib/xmipp3/tests/test_protocols_deepVolPostprocessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,462 copying build/lib/xmipp3/tests/test_protocols_xmipp_2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,466 copying build/lib/xmipp3/tests/test_protocols_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,468 copying build/lib/xmipp3/tests/test_protocols_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,470 copying build/lib/xmipp3/tests/test_convert_xmipp.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,473 copying build/lib/xmipp3/tests/test_protocol_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,475 copying build/lib/xmipp3/tests/test_protocols_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,478 copying build/lib/xmipp3/tests/test_protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,479 copying build/lib/xmipp3/tests/test_protocols_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,482 copying build/lib/xmipp3/tests/test_protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,484 copying build/lib/xmipp3/tests/test_protocols_localdeblur.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,487 copying build/lib/xmipp3/tests/test_protocol_monodir.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,489 copying build/lib/xmipp3/tests/test_protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,491 copying build/lib/xmipp3/tests/test_protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,494 copying build/lib/xmipp3/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,495 copying build/lib/xmipp3/tests/test_protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,497 copying build/lib/xmipp3/tests/test_protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,499 copying build/lib/xmipp3/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,502 copying build/lib/xmipp3/tests/test_protocols_deepcenter_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,504 copying build/lib/xmipp3/tests/test_protocols_continuousflex.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,507 copying build/lib/xmipp3/tests/test_protocols_local_defocus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,509 copying build/lib/xmipp3/tests/test_protocols_xmipp_3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,514 copying build/lib/xmipp3/tests/test_protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,517 copying build/lib/xmipp3/tests/test_protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/tests 2026-07-06T21:47:34,519 copying build/lib/xmipp3/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,521 copying build/lib/xmipp3/version.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,526 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols 2026-07-06T21:47:34,527 copying build/lib/xmipp3/protocols/protocol_compute_likelihood.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,530 copying build/lib/xmipp3/protocols/protocol_write_testC.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,531 copying build/lib/xmipp3/protocols/protocol_align_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,534 copying build/lib/xmipp3/protocols/protocol_pick_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,536 copying build/lib/xmipp3/protocols/protocol_structure_map_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,539 copying build/lib/xmipp3/protocols/protocol_validate_nontilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,542 copying build/lib/xmipp3/protocols/protocol_screen_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,545 copying build/lib/xmipp3/protocols/protocol_phantom_create.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,547 copying build/lib/xmipp3/protocols/protocol_alignPCA_2D.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,550 copying build/lib/xmipp3/protocols/protocol_kerdensom.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,553 copying build/lib/xmipp3/protocols/protocol_resolution_monogenic_signal.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,556 copying build/lib/xmipp3/protocols/protocol_screen_deepConsensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,560 copying build/lib/xmipp3/protocols/protocol_particle_pick_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,563 copying build/lib/xmipp3/protocols/protocol_multiple_fscs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,565 copying build/lib/xmipp3/protocols/protocol_align_volume_and_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,568 copying build/lib/xmipp3/protocols/protocol_particle_pick_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,571 copying build/lib/xmipp3/protocols/protocol_ctf_defocus_group.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,573 copying build/lib/xmipp3/protocols/protocol_structure_map.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,576 copying build/lib/xmipp3/protocols/protocol_assignment_tilt_pair.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,578 copying build/lib/xmipp3/protocols/protocol_movie_split_frames.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,581 copying build/lib/xmipp3/protocols/protocol_simulate_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,584 copying build/lib/xmipp3/protocols/protocol_resolution_bfactor.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,586 copying build/lib/xmipp3/protocols/protocol_resolution3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,589 copying build/lib/xmipp3/protocols/protocol_write_testP.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,592 copying build/lib/xmipp3/protocols/protocol_resolution_directional.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,594 copying build/lib/xmipp3/protocols/protocol_cl2d_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,597 copying build/lib/xmipp3/protocols/protocol_compare_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,599 copying build/lib/xmipp3/protocols/protocol_apply_transformation_matrix.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,602 copying build/lib/xmipp3/protocols/protocol_deep_hand.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,604 copying build/lib/xmipp3/protocols/protocol_convert_pdb.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,607 copying build/lib/xmipp3/protocols/protocol_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,610 copying build/lib/xmipp3/protocols/protocol_generate_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,612 copying build/lib/xmipp3/protocols/protocol_mics_defocus_balancer.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,615 copying build/lib/xmipp3/protocols/protocol_normalize_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,617 copying build/lib/xmipp3/protocols/protocol_classes_2d_mapping.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,619 copying build/lib/xmipp3/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,622 copying build/lib/xmipp3/protocols/protocol_reconstruct_fourier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,624 copying build/lib/xmipp3/protocols/protocol_volume_local_adjust.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,627 copying build/lib/xmipp3/protocols/protocol_cl2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,629 copying build/lib/xmipp3/protocols/protocol_extract_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,632 copying build/lib/xmipp3/protocols/protocol_movie_dose_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,635 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,636 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_add_noise.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,638 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_process.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,640 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_preprocess.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,643 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,646 copying build/lib/xmipp3/protocols/protocol_preprocess/geometrical_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,648 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_mask.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,651 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,654 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,656 copying build/lib/xmipp3/protocols/protocol_preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,658 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_filter.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,661 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_image_operate.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,664 copying build/lib/xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_preprocess 2026-07-06T21:47:34,666 copying build/lib/xmipp3/protocols/protocol_resolution_deepres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,669 copying build/lib/xmipp3/protocols/protocol_helical_parameters.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,671 copying build/lib/xmipp3/protocols/protocol_movie_alignment_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,674 copying build/lib/xmipp3/protocols/protocol_ransac.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,676 copying build/lib/xmipp3/protocols/protocol_trigger_data.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,679 copying build/lib/xmipp3/protocols/protocol_particle_pick_automatic.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,681 copying build/lib/xmipp3/protocols/protocol_cl2d_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,683 copying build/lib/xmipp3/protocols/protocol_analyze_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,686 copying build/lib/xmipp3/protocols/protocol_core_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,688 copying build/lib/xmipp3/protocols/protocol_consensus_classes.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,691 copying build/lib/xmipp3/protocols/protocol_compare_reprojections.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,693 copying build/lib/xmipp3/protocols/protocol_apply_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,696 copying build/lib/xmipp3/protocols/protocol_random_conical_tilt.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,698 copying build/lib/xmipp3/protocols/protocol_volume_strain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,701 copying build/lib/xmipp3/protocols/protocol_volume_consensus.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,703 copying build/lib/xmipp3/protocols/protocol_movie_max_shift.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,705 copying build/lib/xmipp3/protocols/protocol_volume_adjust_sub.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,708 copying build/lib/xmipp3/protocols/protocol_ctf_correct_wiener2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,711 copying build/lib/xmipp3/protocols/protocol_apply_tilt_to_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,713 copying build/lib/xmipp3/protocols/protocol_reconstruct_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,717 copying build/lib/xmipp3/protocols/protocol_rotational_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,719 copying build/lib/xmipp3/protocols/protocol_volume_local_sharpening.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,722 copying build/lib/xmipp3/protocols/protocol_particle_pick_remove_duplicates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,724 copying build/lib/xmipp3/protocols/protocol_shift_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,727 copying build/lib/xmipp3/protocols/protocol_ml2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,730 copying build/lib/xmipp3/protocols/protocol_validate_overfitting.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,732 copying build/lib/xmipp3/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,734 copying build/lib/xmipp3/protocols/protocol_preprocess_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,737 copying build/lib/xmipp3/protocols/protocol_particle_pick.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,739 copying build/lib/xmipp3/protocols/protocol_denoise_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,741 copying build/lib/xmipp3/protocols/protocol_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,744 creating build/bdist.linux-armv7l/wheel/xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,745 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_form.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,748 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_steps.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,750 copying build/lib/xmipp3/protocols/protocol_projmatch/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,752 copying build/lib/xmipp3/protocols/protocol_projmatch/protocol_projmatch.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,754 copying build/lib/xmipp3/protocols/protocol_projmatch/projmatch_initialize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols/protocol_projmatch 2026-07-06T21:47:34,756 copying build/lib/xmipp3/protocols/protocol_consensus_local_ctf.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,759 copying build/lib/xmipp3/protocols/protocol_reconstruct_swarm.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,761 copying build/lib/xmipp3/protocols/protocol_create_gallery.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,764 copying build/lib/xmipp3/protocols/protocol_reconstruct_significant.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,766 copying build/lib/xmipp3/protocols/protocol_volume_deform_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,769 copying build/lib/xmipp3/protocols/protocol_shift_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,771 copying build/lib/xmipp3/protocols/protocol_validate_fscq.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,774 copying build/lib/xmipp3/protocols/protocol_extract_particles_pairs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,778 copying build/lib/xmipp3/protocols/protocol_angular_graph_consistency.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,780 copying build/lib/xmipp3/protocols/protocol_ctf_correct_phase.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,783 copying build/lib/xmipp3/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,785 copying build/lib/xmipp3/protocols/protocol_tilt_analysis.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,788 copying build/lib/xmipp3/protocols/protocol_movie_gain.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,791 copying build/lib/xmipp3/protocols/protocol_multireference_alignability.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,795 copying build/lib/xmipp3/protocols/protocol_ctf_micrographs.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,798 copying build/lib/xmipp3/protocols/protocol_rotate_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,800 copying build/lib/xmipp3/protocols/protocol_resolution_fso.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,803 copying build/lib/xmipp3/protocols/protocol_eliminate_empty_images.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,806 copying build/lib/xmipp3/protocols/protocol_apply_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,808 copying build/lib/xmipp3/protocols/protocol_center_particles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,811 copying build/lib/xmipp3/protocols/protocol_extract_asymmetric_unit.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,813 copying build/lib/xmipp3/protocols/protocol_flexalign.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,816 copying build/lib/xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,819 copying build/lib/xmipp3/protocols/protocol_deep_micrograph_screen.py -> build/bdist.linux-armv7l/wheel/./xmipp3/protocols 2026-07-06T21:47:34,821 copying build/lib/xmipp3/bibtex.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,824 creating build/bdist.linux-armv7l/wheel/xmipp3/convert 2026-07-06T21:47:34,825 copying build/lib/xmipp3/convert/dataimport.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-07-06T21:47:34,828 copying build/lib/xmipp3/convert/convert.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-07-06T21:47:34,830 copying build/lib/xmipp3/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-07-06T21:47:34,832 copying build/lib/xmipp3/convert/io_coordinates.py -> build/bdist.linux-armv7l/wheel/./xmipp3/convert 2026-07-06T21:47:34,834 copying build/lib/xmipp3/protocolsCollectInfo.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,836 copying build/lib/xmipp3/wizards.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,839 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy 2026-07-06T21:47:34,840 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/viewers 2026-07-06T21:47:34,842 copying build/lib/xmipp3/legacy/viewers/viewer_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T21:47:34,843 copying build/lib/xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T21:47:34,846 copying build/lib/xmipp3/legacy/viewers/viewer_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T21:47:34,848 copying build/lib/xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T21:47:34,850 copying build/lib/xmipp3/legacy/viewers/viewer_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T21:47:34,852 copying build/lib/xmipp3/legacy/viewers/viewer_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/viewers 2026-07-06T21:47:34,854 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/tests 2026-07-06T21:47:34,855 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T21:47:34,858 copying build/lib/xmipp3/legacy/tests/test_protocols_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T21:47:34,860 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T21:47:34,862 copying build/lib/xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T21:47:34,864 copying build/lib/xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T21:47:34,866 copying build/lib/xmipp3/legacy/tests/test_protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T21:47:34,868 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T21:47:34,870 copying build/lib/xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T21:47:34,872 copying build/lib/xmipp3/legacy/tests/test_protocols_mixed_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T21:47:34,874 copying build/lib/xmipp3/legacy/tests/test_protocols_xmipp_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T21:47:34,876 copying build/lib/xmipp3/legacy/tests/test_protocols_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/tests 2026-07-06T21:47:34,878 copying build/lib/xmipp3/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy 2026-07-06T21:47:34,880 creating build/bdist.linux-armv7l/wheel/xmipp3/legacy/protocols 2026-07-06T21:47:34,881 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,884 copying build/lib/xmipp3/legacy/protocols/protocol_split_volume.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,886 copying build/lib/xmipp3/legacy/protocols/protocol_particle_boxsize.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,888 copying build/lib/xmipp3/legacy/protocols/protocol_screen_deeplearning.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,890 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,892 copying build/lib/xmipp3/legacy/protocols/protocol_deep_align.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,895 copying build/lib/xmipp3/legacy/protocols/protocol_movie_opticalflow.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,897 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,900 copying build/lib/xmipp3/legacy/protocols/protocol_kmeans_clustering.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,903 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,906 copying build/lib/xmipp3/legacy/protocols/protocol_subtract_projection.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,908 copying build/lib/xmipp3/legacy/protocols/protocol_classification_gpuCorr.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,911 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,914 copying build/lib/xmipp3/legacy/protocols/protocol_deep_center_predict.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,916 copying build/lib/xmipp3/legacy/protocols/protocol_solid_angles.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,919 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,921 copying build/lib/xmipp3/legacy/protocols/protocol_extract_particles_movies.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,924 copying build/lib/xmipp3/legacy/protocols/protocol_mltomo.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,926 copying build/lib/xmipp3/legacy/protocols/protocol_deep_denoising.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,929 copying build/lib/xmipp3/legacy/protocols/protocol_rotational_spectra.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,931 copying build/lib/xmipp3/legacy/protocols/protocol_movie_average.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,934 copying build/lib/xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,936 copying build/lib/xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,938 copying build/lib/xmipp3/legacy/protocols/protocol_classify_kmeans2d.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,941 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,943 copying build/lib/xmipp3/legacy/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,944 copying build/lib/xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,948 copying build/lib/xmipp3/legacy/protocols/protocol_enrich.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,951 copying build/lib/xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py -> build/bdist.linux-armv7l/wheel/./xmipp3/legacy/protocols 2026-07-06T21:47:34,954 copying build/lib/xmipp3/utils.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,956 copying build/lib/xmipp3/base.py -> build/bdist.linux-armv7l/wheel/./xmipp3 2026-07-06T21:47:34,959 running install_egg_info 2026-07-06T21:47:34,964 Copying scipion_em_xmipp.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em_xmipp-29.0.1-py3.11.egg-info 2026-07-06T21:47:34,977 running install_scripts 2026-07-06T21:47:34,990 creating build/bdist.linux-armv7l/wheel/scipion_em_xmipp-29.0.1.dist-info/WHEEL 2026-07-06T21:47:34,993 creating '/tmp/pip-wheel-nujugnui/.tmp-qwtd9xtv/scipion_em_xmipp-29.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-07-06T21:47:35,001 adding 'scipion_em_xmipp-29.0.1.dist-info/licenses/LICENSE' 2026-07-06T21:47:35,004 adding 'xmipp3/__init__.py' 2026-07-06T21:47:35,007 adding 'xmipp3/base.py' 2026-07-06T21:47:35,011 adding 'xmipp3/bibtex.py' 2026-07-06T21:47:35,013 adding 'xmipp3/checkProtocolsConf.py' 2026-07-06T21:47:35,014 adding 'xmipp3/constants.py' 2026-07-06T21:47:35,016 adding 'xmipp3/logParser.py' 2026-07-06T21:47:35,018 adding 'xmipp3/programs.py' 2026-07-06T21:47:35,019 adding 'xmipp3/protocols.conf' 2026-07-06T21:47:35,021 adding 'xmipp3/protocolsCollectInfo.py' 2026-07-06T21:47:35,023 adding 'xmipp3/utils.py' 2026-07-06T21:47:35,025 adding 'xmipp3/version.py' 2026-07-06T21:47:35,027 adding 'xmipp3/wizards.py' 2026-07-06T21:47:35,038 adding 'xmipp3/xmipp_logo.png' 2026-07-06T21:47:35,128 adding 'xmipp3/xmipp_logo_devel.png' 2026-07-06T21:47:35,135 adding 'xmipp3/convert/__init__.py' 2026-07-06T21:47:35,143 adding 'xmipp3/convert/convert.py' 2026-07-06T21:47:35,145 adding 'xmipp3/convert/dataimport.py' 2026-07-06T21:47:35,147 adding 'xmipp3/convert/io_coordinates.py' 2026-07-06T21:47:35,149 adding 'xmipp3/legacy/__init__.py' 2026-07-06T21:47:35,151 adding 'xmipp3/legacy/protocols/__init__.py' 2026-07-06T21:47:35,153 adding 'xmipp3/legacy/protocols/protocol_angular_resolution_alignment.py' 2026-07-06T21:47:35,155 adding 'xmipp3/legacy/protocols/protocol_apply_deformation_zernike3d.py' 2026-07-06T21:47:35,158 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr.py' 2026-07-06T21:47:35,164 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_full.py' 2026-07-06T21:47:35,167 adding 'xmipp3/legacy/protocols/protocol_classification_gpuCorr_semi.py' 2026-07-06T21:47:35,169 adding 'xmipp3/legacy/protocols/protocol_classify_kmeans2d.py' 2026-07-06T21:47:35,173 adding 'xmipp3/legacy/protocols/protocol_deep_align.py' 2026-07-06T21:47:35,175 adding 'xmipp3/legacy/protocols/protocol_deep_center.py' 2026-07-06T21:47:35,176 adding 'xmipp3/legacy/protocols/protocol_deep_center_predict.py' 2026-07-06T21:47:35,179 adding 'xmipp3/legacy/protocols/protocol_deep_denoising.py' 2026-07-06T21:47:35,182 adding 'xmipp3/legacy/protocols/protocol_enrich.py' 2026-07-06T21:47:35,185 adding 'xmipp3/legacy/protocols/protocol_extract_particles_movies.py' 2026-07-06T21:47:35,186 adding 'xmipp3/legacy/protocols/protocol_kmeans_clustering.py' 2026-07-06T21:47:35,188 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_output.py' 2026-07-06T21:47:35,189 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_create_subset.py' 2026-07-06T21:47:35,192 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_discrete_heterogeneity_scheduler.py' 2026-07-06T21:47:35,195 adding 'xmipp3/legacy/protocols/protocol_metaprotocol_golden_highres.py' 2026-07-06T21:47:35,199 adding 'xmipp3/legacy/protocols/protocol_mltomo.py' 2026-07-06T21:47:35,201 adding 'xmipp3/legacy/protocols/protocol_movie_average.py' 2026-07-06T21:47:35,204 adding 'xmipp3/legacy/protocols/protocol_movie_opticalflow.py' 2026-07-06T21:47:35,206 adding 'xmipp3/legacy/protocols/protocol_particle_boxsize.py' 2026-07-06T21:47:35,211 adding 'xmipp3/legacy/protocols/protocol_reconstruct_heterogeneous.py' 2026-07-06T21:47:35,213 adding 'xmipp3/legacy/protocols/protocol_rotational_spectra.py' 2026-07-06T21:47:35,215 adding 'xmipp3/legacy/protocols/protocol_screen_deeplearning.py' 2026-07-06T21:47:35,219 adding 'xmipp3/legacy/protocols/protocol_solid_angles.py' 2026-07-06T21:47:35,221 adding 'xmipp3/legacy/protocols/protocol_split_volume.py' 2026-07-06T21:47:35,225 adding 'xmipp3/legacy/protocols/protocol_split_volume_hierarchical_cluster.py' 2026-07-06T21:47:35,227 adding 'xmipp3/legacy/protocols/protocol_subtract_projection.py' 2026-07-06T21:47:35,229 adding 'xmipp3/legacy/tests/test_protocol_deep_denoising.py' 2026-07-06T21:47:35,231 adding 'xmipp3/legacy/tests/test_protocols_angular_resolution_alignment.py' 2026-07-06T21:47:35,232 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_classifier.py' 2026-07-06T21:47:35,234 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_fullStreaming.py' 2026-07-06T21:47:35,236 adding 'xmipp3/legacy/tests/test_protocols_gpuCorr_semiStreaming.py' 2026-07-06T21:47:35,237 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_golden_highres.py' 2026-07-06T21:47:35,239 adding 'xmipp3/legacy/tests/test_protocols_metaprotocol_heterogeneity.py' 2026-07-06T21:47:35,240 adding 'xmipp3/legacy/tests/test_protocols_mixed_movies.py' 2026-07-06T21:47:35,242 adding 'xmipp3/legacy/tests/test_protocols_solid_angles.py' 2026-07-06T21:47:35,248 adding 'xmipp3/legacy/tests/test_protocols_subtract_projection.py' 2026-07-06T21:47:35,251 adding 'xmipp3/legacy/tests/test_protocols_xmipp_movies.py' 2026-07-06T21:47:35,253 adding 'xmipp3/legacy/viewers/viewer_angular_resolution_alignment.py' 2026-07-06T21:47:35,254 adding 'xmipp3/legacy/viewers/viewer_deep_align.py' 2026-07-06T21:47:35,256 adding 'xmipp3/legacy/viewers/viewer_metaprotocol_golden_highres.py' 2026-07-06T21:47:35,258 adding 'xmipp3/legacy/viewers/viewer_mltomo.py' 2026-07-06T21:47:35,259 adding 'xmipp3/legacy/viewers/viewer_solid_angles.py' 2026-07-06T21:47:35,261 adding 'xmipp3/legacy/viewers/viewer_split_volume.py' 2026-07-06T21:47:35,266 adding 'xmipp3/protocols/__init__.py' 2026-07-06T21:47:35,272 adding 'xmipp3/protocols/protocol_alignPCA_2D.py' 2026-07-06T21:47:35,276 adding 'xmipp3/protocols/protocol_align_volume.py' 2026-07-06T21:47:35,279 adding 'xmipp3/protocols/protocol_align_volume_and_particles.py' 2026-07-06T21:47:35,282 adding 'xmipp3/protocols/protocol_analyze_local_ctf.py' 2026-07-06T21:47:35,288 adding 'xmipp3/protocols/protocol_angular_graph_consistency.py' 2026-07-06T21:47:35,291 adding 'xmipp3/protocols/protocol_apply_alignment.py' 2026-07-06T21:47:35,293 adding 'xmipp3/protocols/protocol_apply_tilt_to_ctf.py' 2026-07-06T21:47:35,295 adding 'xmipp3/protocols/protocol_apply_transformation_matrix.py' 2026-07-06T21:47:35,298 adding 'xmipp3/protocols/protocol_apply_zernike3d.py' 2026-07-06T21:47:35,301 adding 'xmipp3/protocols/protocol_assignment_tilt_pair.py' 2026-07-06T21:47:35,303 adding 'xmipp3/protocols/protocol_break_symmetry.py' 2026-07-06T21:47:35,306 adding 'xmipp3/protocols/protocol_center_particles.py' 2026-07-06T21:47:35,311 adding 'xmipp3/protocols/protocol_cl2d.py' 2026-07-06T21:47:35,313 adding 'xmipp3/protocols/protocol_cl2d_align.py' 2026-07-06T21:47:35,316 adding 'xmipp3/protocols/protocol_cl2d_clustering.py' 2026-07-06T21:47:35,319 adding 'xmipp3/protocols/protocol_classes_2d_mapping.py' 2026-07-06T21:47:35,321 adding 'xmipp3/protocols/protocol_compare_angles.py' 2026-07-06T21:47:35,326 adding 'xmipp3/protocols/protocol_compare_reprojections.py' 2026-07-06T21:47:35,330 adding 'xmipp3/protocols/protocol_compute_likelihood.py' 2026-07-06T21:47:35,334 adding 'xmipp3/protocols/protocol_consensus_classes.py' 2026-07-06T21:47:35,337 adding 'xmipp3/protocols/protocol_consensus_local_ctf.py' 2026-07-06T21:47:35,340 adding 'xmipp3/protocols/protocol_convert_pdb.py' 2026-07-06T21:47:35,343 adding 'xmipp3/protocols/protocol_core_analysis.py' 2026-07-06T21:47:35,345 adding 'xmipp3/protocols/protocol_create_gallery.py' 2026-07-06T21:47:35,351 adding 'xmipp3/protocols/protocol_ctf_consensus.py' 2026-07-06T21:47:35,353 adding 'xmipp3/protocols/protocol_ctf_correct_phase.py' 2026-07-06T21:47:35,355 adding 'xmipp3/protocols/protocol_ctf_correct_wiener2d.py' 2026-07-06T21:47:35,358 adding 'xmipp3/protocols/protocol_ctf_defocus_group.py' 2026-07-06T21:47:35,363 adding 'xmipp3/protocols/protocol_ctf_micrographs.py' 2026-07-06T21:47:35,365 adding 'xmipp3/protocols/protocol_deep_hand.py' 2026-07-06T21:47:35,370 adding 'xmipp3/protocols/protocol_deep_micrograph_screen.py' 2026-07-06T21:47:35,373 adding 'xmipp3/protocols/protocol_denoise_particles.py' 2026-07-06T21:47:35,377 adding 'xmipp3/protocols/protocol_eliminate_empty_images.py' 2026-07-06T21:47:35,380 adding 'xmipp3/protocols/protocol_extract_asymmetric_unit.py' 2026-07-06T21:47:35,385 adding 'xmipp3/protocols/protocol_extract_particles.py' 2026-07-06T21:47:35,391 adding 'xmipp3/protocols/protocol_extract_particles_pairs.py' 2026-07-06T21:47:35,396 adding 'xmipp3/protocols/protocol_flexalign.py' 2026-07-06T21:47:35,399 adding 'xmipp3/protocols/protocol_generate_reprojections.py' 2026-07-06T21:47:35,402 adding 'xmipp3/protocols/protocol_helical_parameters.py' 2026-07-06T21:47:35,405 adding 'xmipp3/protocols/protocol_kerdensom.py' 2026-07-06T21:47:35,408 adding 'xmipp3/protocols/protocol_local_ctf.py' 2026-07-06T21:47:35,412 adding 'xmipp3/protocols/protocol_mics_defocus_balancer.py' 2026-07-06T21:47:35,416 adding 'xmipp3/protocols/protocol_ml2d.py' 2026-07-06T21:47:35,421 adding 'xmipp3/protocols/protocol_movie_alignment_consensus.py' 2026-07-06T21:47:35,426 adding 'xmipp3/protocols/protocol_movie_dose_analysis.py' 2026-07-06T21:47:35,431 adding 'xmipp3/protocols/protocol_movie_gain.py' 2026-07-06T21:47:35,435 adding 'xmipp3/protocols/protocol_movie_max_shift.py' 2026-07-06T21:47:35,438 adding 'xmipp3/protocols/protocol_movie_split_frames.py' 2026-07-06T21:47:35,441 adding 'xmipp3/protocols/protocol_multiple_fscs.py' 2026-07-06T21:47:35,446 adding 'xmipp3/protocols/protocol_multireference_alignability.py' 2026-07-06T21:47:35,449 adding 'xmipp3/protocols/protocol_normalize_strain.py' 2026-07-06T21:47:35,452 adding 'xmipp3/protocols/protocol_particle_pick.py' 2026-07-06T21:47:35,455 adding 'xmipp3/protocols/protocol_particle_pick_automatic.py' 2026-07-06T21:47:35,459 adding 'xmipp3/protocols/protocol_particle_pick_consensus.py' 2026-07-06T21:47:35,462 adding 'xmipp3/protocols/protocol_particle_pick_pairs.py' 2026-07-06T21:47:35,464 adding 'xmipp3/protocols/protocol_particle_pick_remove_duplicates.py' 2026-07-06T21:47:35,466 adding 'xmipp3/protocols/protocol_phantom_create.py' 2026-07-06T21:47:35,468 adding 'xmipp3/protocols/protocol_pick_noise.py' 2026-07-06T21:47:35,472 adding 'xmipp3/protocols/protocol_postProcessing_deepPostProcessing.py' 2026-07-06T21:47:35,476 adding 'xmipp3/protocols/protocol_preprocess_micrographs.py' 2026-07-06T21:47:35,480 adding 'xmipp3/protocols/protocol_random_conical_tilt.py' 2026-07-06T21:47:35,486 adding 'xmipp3/protocols/protocol_ransac.py' 2026-07-06T21:47:35,489 adding 'xmipp3/protocols/protocol_reconstruct_fourier.py' 2026-07-06T21:47:35,502 adding 'xmipp3/protocols/protocol_reconstruct_highres.py' 2026-07-06T21:47:35,507 adding 'xmipp3/protocols/protocol_reconstruct_significant.py' 2026-07-06T21:47:35,512 adding 'xmipp3/protocols/protocol_reconstruct_swarm.py' 2026-07-06T21:47:35,515 adding 'xmipp3/protocols/protocol_resolution3d.py' 2026-07-06T21:47:35,517 adding 'xmipp3/protocols/protocol_resolution_bfactor.py' 2026-07-06T21:47:35,521 adding 'xmipp3/protocols/protocol_resolution_deepres.py' 2026-07-06T21:47:35,524 adding 'xmipp3/protocols/protocol_resolution_directional.py' 2026-07-06T21:47:35,527 adding 'xmipp3/protocols/protocol_resolution_fso.py' 2026-07-06T21:47:35,531 adding 'xmipp3/protocols/protocol_resolution_monogenic_signal.py' 2026-07-06T21:47:35,533 adding 'xmipp3/protocols/protocol_rotate_volume.py' 2026-07-06T21:47:35,535 adding 'xmipp3/protocols/protocol_rotational_symmetry.py' 2026-07-06T21:47:35,550 adding 'xmipp3/protocols/protocol_screen_deepConsensus.py' 2026-07-06T21:47:35,557 adding 'xmipp3/protocols/protocol_screen_particles.py' 2026-07-06T21:47:35,562 adding 'xmipp3/protocols/protocol_shift_particles.py' 2026-07-06T21:47:35,565 adding 'xmipp3/protocols/protocol_shift_volume.py' 2026-07-06T21:47:35,567 adding 'xmipp3/protocols/protocol_simulate_ctf.py' 2026-07-06T21:47:35,570 adding 'xmipp3/protocols/protocol_structure_map.py' 2026-07-06T21:47:35,574 adding 'xmipp3/protocols/protocol_structure_map_zernike3d.py' 2026-07-06T21:47:35,578 adding 'xmipp3/protocols/protocol_subtract_projection.py' 2026-07-06T21:47:35,583 adding 'xmipp3/protocols/protocol_tilt_analysis.py' 2026-07-06T21:47:35,586 adding 'xmipp3/protocols/protocol_trigger_data.py' 2026-07-06T21:47:35,591 adding 'xmipp3/protocols/protocol_validate_fscq.py' 2026-07-06T21:47:35,595 adding 'xmipp3/protocols/protocol_validate_nontilt.py' 2026-07-06T21:47:35,599 adding 'xmipp3/protocols/protocol_validate_overfitting.py' 2026-07-06T21:47:35,603 adding 'xmipp3/protocols/protocol_volume_adjust_sub.py' 2026-07-06T21:47:35,606 adding 'xmipp3/protocols/protocol_volume_consensus.py' 2026-07-06T21:47:35,609 adding 'xmipp3/protocols/protocol_volume_deform_zernike3d.py' 2026-07-06T21:47:35,611 adding 'xmipp3/protocols/protocol_volume_local_adjust.py' 2026-07-06T21:47:35,615 adding 'xmipp3/protocols/protocol_volume_local_sharpening.py' 2026-07-06T21:47:35,617 adding 'xmipp3/protocols/protocol_volume_strain.py' 2026-07-06T21:47:35,619 adding 'xmipp3/protocols/protocol_write_testC.py' 2026-07-06T21:47:35,620 adding 'xmipp3/protocols/protocol_write_testP.py' 2026-07-06T21:47:35,622 adding 'xmipp3/protocols/protocol_preprocess/__init__.py' 2026-07-06T21:47:35,624 adding 'xmipp3/protocols/protocol_preprocess/geometrical_mask.py' 2026-07-06T21:47:35,627 adding 'xmipp3/protocols/protocol_preprocess/protocol_add_noise.py' 2026-07-06T21:47:35,629 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask2d.py' 2026-07-06T21:47:35,633 adding 'xmipp3/protocols/protocol_preprocess/protocol_create_mask3d.py' 2026-07-06T21:47:35,638 adding 'xmipp3/protocols/protocol_preprocess/protocol_crop_resize.py' 2026-07-06T21:47:35,643 adding 'xmipp3/protocols/protocol_preprocess/protocol_filter.py' 2026-07-06T21:47:35,647 adding 'xmipp3/protocols/protocol_preprocess/protocol_image_operate.py' 2026-07-06T21:47:35,651 adding 'xmipp3/protocols/protocol_preprocess/protocol_mask.py' 2026-07-06T21:47:35,654 adding 'xmipp3/protocols/protocol_preprocess/protocol_movie_resize.py' 2026-07-06T21:47:35,661 adding 'xmipp3/protocols/protocol_preprocess/protocol_preprocess.py' 2026-07-06T21:47:35,663 adding 'xmipp3/protocols/protocol_preprocess/protocol_process.py' 2026-07-06T21:47:35,665 adding 'xmipp3/protocols/protocol_projmatch/__init__.py' 2026-07-06T21:47:35,669 adding 'xmipp3/protocols/protocol_projmatch/projmatch_form.py' 2026-07-06T21:47:35,671 adding 'xmipp3/protocols/protocol_projmatch/projmatch_initialize.py' 2026-07-06T21:47:35,675 adding 'xmipp3/protocols/protocol_projmatch/projmatch_steps.py' 2026-07-06T21:47:35,678 adding 'xmipp3/protocols/protocol_projmatch/protocol_projmatch.py' 2026-07-06T21:47:35,680 adding 'xmipp3/tests/__init__.py' 2026-07-06T21:47:35,684 adding 'xmipp3/tests/test_convert_xmipp.py' 2026-07-06T21:47:35,686 adding 'xmipp3/tests/test_protocol_angular_graph_consistency.py' 2026-07-06T21:47:35,687 adding 'xmipp3/tests/test_protocol_apply_transformation_matrix.py' 2026-07-06T21:47:35,689 adding 'xmipp3/tests/test_protocol_compare_angles.py' 2026-07-06T21:47:35,690 adding 'xmipp3/tests/test_protocol_consensus_classes3D.py' 2026-07-06T21:47:35,692 adding 'xmipp3/tests/test_protocol_ctf_consensus.py' 2026-07-06T21:47:35,695 adding 'xmipp3/tests/test_protocol_extract_asymmetric_unit.py' 2026-07-06T21:47:35,697 adding 'xmipp3/tests/test_protocol_likelihood.py' 2026-07-06T21:47:35,698 adding 'xmipp3/tests/test_protocol_monodir.py' 2026-07-06T21:47:35,699 adding 'xmipp3/tests/test_protocol_multiple_fsc.py' 2026-07-06T21:47:35,701 adding 'xmipp3/tests/test_protocol_multireference_alignability.py' 2026-07-06T21:47:35,702 adding 'xmipp3/tests/test_protocol_reconstruct_fourier.py' 2026-07-06T21:47:35,704 adding 'xmipp3/tests/test_protocol_screen_deepConsensus.py' 2026-07-06T21:47:35,705 adding 'xmipp3/tests/test_protocol_simulate_ctf.py' 2026-07-06T21:47:35,707 adding 'xmipp3/tests/test_protocol_split_frames.py' 2026-07-06T21:47:35,708 adding 'xmipp3/tests/test_protocol_validate_fscq.py' 2026-07-06T21:47:35,709 adding 'xmipp3/tests/test_protocol_validate_overfitting.py' 2026-07-06T21:47:35,711 adding 'xmipp3/tests/test_protocols_add_noise.py' 2026-07-06T21:47:35,712 adding 'xmipp3/tests/test_protocols_continuousflex.py' 2026-07-06T21:47:35,714 adding 'xmipp3/tests/test_protocols_deepVolPostprocessing.py' 2026-07-06T21:47:35,715 adding 'xmipp3/tests/test_protocols_deepcenter_predict.py' 2026-07-06T21:47:35,717 adding 'xmipp3/tests/test_protocols_deepres.py' 2026-07-06T21:47:35,718 adding 'xmipp3/tests/test_protocols_fso.py' 2026-07-06T21:47:35,720 adding 'xmipp3/tests/test_protocols_highres.py' 2026-07-06T21:47:35,721 adding 'xmipp3/tests/test_protocols_local_defocus.py' 2026-07-06T21:47:35,723 adding 'xmipp3/tests/test_protocols_localdeblur.py' 2026-07-06T21:47:35,724 adding 'xmipp3/tests/test_protocols_monores.py' 2026-07-06T21:47:35,726 adding 'xmipp3/tests/test_protocols_realignment_classes.py' 2026-07-06T21:47:35,733 adding 'xmipp3/tests/test_protocols_xmipp_2d.py' 2026-07-06T21:47:35,741 adding 'xmipp3/tests/test_protocols_xmipp_3d.py' 2026-07-06T21:47:35,747 adding 'xmipp3/tests/test_protocols_xmipp_mics.py' 2026-07-06T21:47:35,749 adding 'xmipp3/tests/test_protocols_xmipp_movie_resize.py' 2026-07-06T21:47:35,751 adding 'xmipp3/tests/test_protocols_xmipp_movies.py' 2026-07-06T21:47:35,753 adding 'xmipp3/tests/test_protocols_zernike3d.py' 2026-07-06T21:47:35,756 adding 'xmipp3/viewers/__init__.py' 2026-07-06T21:47:35,758 adding 'xmipp3/viewers/plotter.py' 2026-07-06T21:47:35,760 adding 'xmipp3/viewers/viewer.py' 2026-07-06T21:47:35,762 adding 'xmipp3/viewers/viewer_LL_matrix.py' 2026-07-06T21:47:35,764 adding 'xmipp3/viewers/viewer_analyze_local_ctf.py' 2026-07-06T21:47:35,765 adding 'xmipp3/viewers/viewer_apply_tilt_to_ctf.py' 2026-07-06T21:47:35,767 adding 'xmipp3/viewers/viewer_cl2d.py' 2026-07-06T21:47:35,769 adding 'xmipp3/viewers/viewer_cl2d_clustering.py' 2026-07-06T21:47:35,770 adding 'xmipp3/viewers/viewer_consensus_classes.py' 2026-07-06T21:47:35,772 adding 'xmipp3/viewers/viewer_ctf_consensus.py' 2026-07-06T21:47:35,773 adding 'xmipp3/viewers/viewer_deepEMHancer.py' 2026-07-06T21:47:35,775 adding 'xmipp3/viewers/viewer_deep_consensus.py' 2026-07-06T21:47:35,776 adding 'xmipp3/viewers/viewer_deep_micrograph_cleaner.py' 2026-07-06T21:47:35,778 adding 'xmipp3/viewers/viewer_dose_analysis.py' 2026-07-06T21:47:35,779 adding 'xmipp3/viewers/viewer_eliminate_empty_images.py' 2026-07-06T21:47:35,781 adding 'xmipp3/viewers/viewer_extract_asymmetric_unit.py' 2026-07-06T21:47:35,782 adding 'xmipp3/viewers/viewer_local_sharpening.py' 2026-07-06T21:47:35,784 adding 'xmipp3/viewers/viewer_ml2d.py' 2026-07-06T21:47:35,786 adding 'xmipp3/viewers/viewer_movie_alignment.py' 2026-07-06T21:47:35,787 adding 'xmipp3/viewers/viewer_normalize_strain.py' 2026-07-06T21:47:35,788 adding 'xmipp3/viewers/viewer_pdb_deform_zernike3d.py' 2026-07-06T21:47:35,792 adding 'xmipp3/viewers/viewer_projmatch.py' 2026-07-06T21:47:35,794 adding 'xmipp3/viewers/viewer_ransac.py' 2026-07-06T21:47:35,796 adding 'xmipp3/viewers/viewer_reconstruct_highres.py' 2026-07-06T21:47:35,798 adding 'xmipp3/viewers/viewer_resolution3d.py' 2026-07-06T21:47:35,799 adding 'xmipp3/viewers/viewer_resolution_bfactor.py' 2026-07-06T21:47:35,801 adding 'xmipp3/viewers/viewer_resolution_deepres.py' 2026-07-06T21:47:35,804 adding 'xmipp3/viewers/viewer_resolution_directional.py' 2026-07-06T21:47:35,806 adding 'xmipp3/viewers/viewer_resolution_fso.py' 2026-07-06T21:47:35,808 adding 'xmipp3/viewers/viewer_resolution_monogenic_signal.py' 2026-07-06T21:47:35,811 adding 'xmipp3/viewers/viewer_structure_map.py' 2026-07-06T21:47:35,813 adding 'xmipp3/viewers/viewer_subtract_projection.py' 2026-07-06T21:47:35,814 adding 'xmipp3/viewers/viewer_swarm.py' 2026-07-06T21:47:35,816 adding 'xmipp3/viewers/viewer_validate_fscq.py' 2026-07-06T21:47:35,818 adding 'xmipp3/viewers/viewer_validate_nontilt.py' 2026-07-06T21:47:35,819 adding 'xmipp3/viewers/viewer_validate_overfitting.py' 2026-07-06T21:47:35,821 adding 'xmipp3/viewers/viewer_volume_consensus.py' 2026-07-06T21:47:35,822 adding 'xmipp3/viewers/viewer_volume_deform_zernike3d.py' 2026-07-06T21:47:35,824 adding 'xmipp3/viewers/viewer_volume_strain.py' 2026-07-06T21:47:35,825 adding 'xmipp3/viewers/viewer_volume_subtraction.py' 2026-07-06T21:47:35,827 adding 'scipion_em_xmipp-29.0.1.dist-info/METADATA' 2026-07-06T21:47:35,828 adding 'scipion_em_xmipp-29.0.1.dist-info/WHEEL' 2026-07-06T21:47:35,829 adding 'scipion_em_xmipp-29.0.1.dist-info/entry_points.txt' 2026-07-06T21:47:35,830 adding 'scipion_em_xmipp-29.0.1.dist-info/top_level.txt' 2026-07-06T21:47:35,834 adding 'scipion_em_xmipp-29.0.1.dist-info/RECORD' 2026-07-06T21:47:35,859 removing build/bdist.linux-armv7l/wheel 2026-07-06T21:47:36,017 Building wheel for scipion-em-xmipp (pyproject.toml): finished with status 'done' 2026-07-06T21:47:36,068 Created wheel for scipion-em-xmipp: filename=scipion_em_xmipp-29.0.1-py3-none-any.whl size=2137464 sha256=25df6c02cc616114587b323e34b10bc48b7d013c8ab0cedeb2c8ffbe3d0de396 2026-07-06T21:47:36,069 Stored in directory: /tmp/pip-ephem-wheel-cache-4jpgibo0/wheels/85/40/8c/95c379e36791870907303ba5627450db968832057b0cac0124 2026-07-06T21:47:36,089 Successfully built scipion-em-xmipp 2026-07-06T21:47:36,144 Removed build tracker: '/tmp/pip-build-tracker-eomy6j10'