2026-07-07T19:45:14,077 Created temporary directory: /tmp/pip-ephem-wheel-cache-t6z9eo8r
2026-07-07T19:45:14,079 Created temporary directory: /tmp/pip-build-tracker-bff4k5do
2026-07-07T19:45:14,080 Initialized build tracking at /tmp/pip-build-tracker-bff4k5do
2026-07-07T19:45:14,080 Created build tracker: /tmp/pip-build-tracker-bff4k5do
2026-07-07T19:45:14,081 Entered build tracker: /tmp/pip-build-tracker-bff4k5do
2026-07-07T19:45:14,082 Created temporary directory: /tmp/pip-wheel-fi72h_d5
2026-07-07T19:45:14,084 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-07-07T19:45:14,087 Created temporary directory: /tmp/pip-ephem-wheel-cache-odhm6dpf
2026-07-07T19:45:14,111 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-07-07T19:45:14,115 2 location(s) to search for versions of oncoref:
2026-07-07T19:45:14,115 * https://pypi.org/simple/oncoref/
2026-07-07T19:45:14,115 * https://www.piwheels.org/simple/oncoref/
2026-07-07T19:45:14,115 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/
2026-07-07T19:45:14,116 Getting page https://pypi.org/simple/oncoref/
2026-07-07T19:45:14,118 Found index url https://pypi.org/simple
2026-07-07T19:45:14,366 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json
2026-07-07T19:45:14,397   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,398   Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0
2026-07-07T19:45:14,399   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,400   Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0
2026-07-07T19:45:14,401   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,402   Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0
2026-07-07T19:45:14,403   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,404   Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1
2026-07-07T19:45:14,404   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,405   Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2
2026-07-07T19:45:14,406   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,407   Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3
2026-07-07T19:45:14,408   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,409   Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4
2026-07-07T19:45:14,409   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,410   Found link https://files.pythonhosted.org/packages/0a/e2/de65c5e1582fe009b3f640e94e6ecd5cf2f139d490750374cdad3af0e14c/oncoref-1.8.5.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.5
2026-07-07T19:45:14,411   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/71/92/3cd4d589831ccb90b12732347718e54d84097a6c780ced1810f52e3b302a/oncoref-1.8.6-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,412   Found link https://files.pythonhosted.org/packages/fe/29/0640ff92bcb51841b69a4d04ccf94a5173a18ee10c54786b959026ca4362/oncoref-1.8.6.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.6
2026-07-07T19:45:14,413   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f2/29/f869b37c956b8836b9c9b45e89ab7dad98a93270e6bd395b45a7ca5657ad/oncoref-1.8.7-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,414   Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7
2026-07-07T19:45:14,414   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,415   Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8
2026-07-07T19:45:14,416   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,417   Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9
2026-07-07T19:45:14,418   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,419   Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10
2026-07-07T19:45:14,420   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,420   Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11
2026-07-07T19:45:14,421   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,422   Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12
2026-07-07T19:45:14,422   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,423   Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13
2026-07-07T19:45:14,424   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2f/c1/703bd890ae830651eae083a090278ba8254ac89bae1c0bfefed061c3e2eb/oncoref-1.8.14-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,425   Found link https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.14
2026-07-07T19:45:14,425   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ac/42/91b2b04455fb29d40afb47dc7ee2eae30218a24c4d540d95191d31f6f98e/oncoref-1.8.15-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,426   Found link https://files.pythonhosted.org/packages/26/8a/9cb4754077d37b89ed3ee3781cffdb03040d90286aaaedacba8cb238d7c3/oncoref-1.8.15.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.15
2026-07-07T19:45:14,427   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/3f/1af50bb6d208ada32a29b7e3ed29169932b97542b48e765c1d96130b7f3d/oncoref-1.8.16-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,428   Found link https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.16
2026-07-07T19:45:14,429   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/77/d24a0f29e452b83e5d6a1bfb366c72b8407bc7505d94280ca3ba609de07e/oncoref-1.8.17-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,430   Found link https://files.pythonhosted.org/packages/c1/e7/7f753f3a4b044b3f3bc8f75b75ef24df1c9b77d3f0742ee37fc243441830/oncoref-1.8.17.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.17
2026-07-07T19:45:14,430   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/04/55/5f2c1936263bdbe9a95a7c82d673eae8724b3eb1b99d4c1c33eadfc6edf5/oncoref-1.8.18-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,431   Found link https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.18
2026-07-07T19:45:14,432   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/07/35/638b350ebd4fd975c88adb9168c250b482cf549a77381cced479cdf3923f/oncoref-1.8.19-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,433   Found link https://files.pythonhosted.org/packages/39/5a/c1460247c124e495fc20ae3e76a760ee67da5f7263531a1093ae4cdc1983/oncoref-1.8.19.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.19
2026-07-07T19:45:14,434   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/eb/2d/584fe29a9ae1a336ec8dc1dadc08e60e036de296b703c428b69aafb97ee7/oncoref-1.8.20-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,434   Found link https://files.pythonhosted.org/packages/aa/5b/9be05673420aae6512388fb70ff3b3802ca0bca46179299c93e9bdea7cb1/oncoref-1.8.20.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.20
2026-07-07T19:45:14,435   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/c2/b8/d13577ba1cd9a054203201a66d94d70c8c71156e5afaf85c557c52a8a4c8/oncoref-1.8.21-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,436   Found link https://files.pythonhosted.org/packages/f6/9d/ca143333eade742f336f48670b06ee9849c2c31d9322c5c7bb6979a191a3/oncoref-1.8.21.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.21
2026-07-07T19:45:14,436   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/59/bd/c385a7916a14b417f607eecb73034e821165e8f650435947ecf8845c5161/oncoref-1.8.22-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,437   Found link https://files.pythonhosted.org/packages/a7/cc/f9b0c987a30c7928b99e165f2bd778a677eb1433eb0802911d6678139aeb/oncoref-1.8.22.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.22
2026-07-07T19:45:14,438   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/e7/f2/ae5d03f1bf678a753916310b281effcbc4cf19a4e0e6995437966ad6ac91/oncoref-1.8.23-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,439   Found link https://files.pythonhosted.org/packages/be/8c/f6a66a8ae2ba39778734de5548a77246995f30c636670ff2ca38094ff59e/oncoref-1.8.23.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.23
2026-07-07T19:45:14,440   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/8d/ca3b2c8c719845b8c38ff91118723bb2c965155ac0a49af2ff8ceff50a56/oncoref-1.8.24-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,440   Found link https://files.pythonhosted.org/packages/62/f6/e9a386e5a93bd80d065addcc4050fefd3bb6e8b55b75ea3ba88025f95255/oncoref-1.8.24.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.24
2026-07-07T19:45:14,441   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/8d/48/dd730548afc982ad049e59c8084f8847a0c49e3d0e288d7b0c299abdad9b/oncoref-1.8.25-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,442   Found link https://files.pythonhosted.org/packages/fe/48/42ff82844f2c14e04799c0441651a2c9b147da3707e4924129d0352b5525/oncoref-1.8.25.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.25
2026-07-07T19:45:14,443   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/15/fc/76fa123a1303b6db49cade8bf9985e206e992b14ad3d49b446acf8ee9516/oncoref-1.8.26-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,444   Found link https://files.pythonhosted.org/packages/e7/5c/785ef9ba1884cb96cc5c5bb24da2b2b7d5836404cefa2cc6b9589707d264/oncoref-1.8.26.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.26
2026-07-07T19:45:14,445   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/1f/6e/9d45c29e74006d28dd4da8b329a4b939dd7bfa89496792f969392734b44a/oncoref-1.8.27-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,446   Found link https://files.pythonhosted.org/packages/b1/35/566b316d8325fc6cf07c3cb72c7432a37302396da59a1b78dbd75c3c8e2b/oncoref-1.8.27.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.27
2026-07-07T19:45:14,446   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/97/00/35532e9bdea879c0aa0ccabcdb2cd219ebb85a68b2217df7ba7b4e690ae7/oncoref-1.8.28-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,447   Found link https://files.pythonhosted.org/packages/13/9d/8de61415a5fc5f654ab220434460585d470cbad471be6847a7ab9df31f8e/oncoref-1.8.28.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.28
2026-07-07T19:45:14,448   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/a0/67/d6b656f6dac57592c3159a801f6d02a92a2ce18ba32ccd5706b5207e164a/oncoref-1.8.29-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
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2026-07-07T19:45:14,449   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/43/a4/227ff6f4ae0f3c95e3b0d9d5f358041743d97033af86445a782d45424f0b/oncoref-1.8.30-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
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2026-07-07T19:45:14,451   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/50/a5/5b6544be002cdcf826b2408f79eaad8b9b940cba455d1e12e1fa3badc5fe/oncoref-1.8.31-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
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2026-07-07T19:45:14,456   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/bb/25/bfd51f9dd4c0cbefb0c5e8a8e62f24240d7a9258ffc20fd7b13580ba8ff6/oncoref-1.8.34-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,457   Found link https://files.pythonhosted.org/packages/25/0d/6faf9afb3d294be540966dacf064b4535363addf9526a5b664a5f82d3e17/oncoref-1.8.34.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.34
2026-07-07T19:45:14,458   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/0e/e3/af9661216ef35c7927ff036c6605d5313db77b7c24d4c517a63e895e7d3b/oncoref-1.8.35-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,458   Found link https://files.pythonhosted.org/packages/e9/c0/76a4f7b46f10f6dc0e747ccc5d47a576650f8decf252c2ada34cbbe840e2/oncoref-1.8.35.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.35
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2026-07-07T19:45:14,460   Found link https://files.pythonhosted.org/packages/55/9a/84dbbc6ea3ae2ff8aac0f3aaa8ae54e02d8d0a0087a8360557a8a1286b95/oncoref-1.8.36.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.36
2026-07-07T19:45:14,460   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/4d/f5/c1405d41403014888dce3bcd0949c71a027e1e75ea380f4975570fc8b46f/oncoref-1.8.37-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,461   Found link https://files.pythonhosted.org/packages/0e/0b/72bd0e0173f146b0086de234a742f28d3b1cc301a1505a3b66d6b8efddf0/oncoref-1.8.37.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.37
2026-07-07T19:45:14,462   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5f/9c/2c46b3c53b9918c1d669098e5965b34bffda6caa4f4a041611983c7ecf08/oncoref-1.8.38-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,463   Found link https://files.pythonhosted.org/packages/65/fc/8336d0bbc6bca50ba7322753a9db0df968d6988b3940aa77d88515aef967/oncoref-1.8.38.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.38
2026-07-07T19:45:14,463   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/39/1a/b0e1d634e362ed4891470e1ec001b5d1fb05222e5bba555c106fd6111141/oncoref-1.8.39-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,464   Found link https://files.pythonhosted.org/packages/12/4e/6bb3e440d16d94f6fc3fc6fb9dd2410a00c521d4d47b0fc712122a4b8c4b/oncoref-1.8.39.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.39
2026-07-07T19:45:14,465   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/db/19/dd829982eda7e158cd173bc73fa698c30648cc6c3ea401a18645bfa317d0/oncoref-1.8.40-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,466   Found link https://files.pythonhosted.org/packages/f6/1d/f5d0631b8ad9252a892b183cb768aacce72762dc17776d3ca44e265d8ee8/oncoref-1.8.40.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.40
2026-07-07T19:45:14,467   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/d1/54/d77ecb3bc76d02d593e89016cc38578555fea787d6a760eb87281e21fdfa/oncoref-1.8.41-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,468   Found link https://files.pythonhosted.org/packages/72/02/7901b2d6372e9045730be8f452bdfab1613982d2cf1712536f48dd9be8c7/oncoref-1.8.41.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.41
2026-07-07T19:45:14,468   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/12/93/3a90dd02995718276003019970689c3de986576ab5adef43ad0d48802810/oncoref-1.8.42-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,470   Found link https://files.pythonhosted.org/packages/05/da/94f874622f15c3850c9797feae793e65cc5b7d8b0af191b4d227c6a4c073/oncoref-1.8.42.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.42
2026-07-07T19:45:14,470   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/6c/02/ea91751a66f3a26a8b813300d75b4a8b898bbded5dd7a57b6d76399cf2a5/oncoref-1.8.43-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,471   Found link https://files.pythonhosted.org/packages/b6/74/3aca0abb1bdcf1b1b8c148467893775e386e010b57e746309f75e197200c/oncoref-1.8.43.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.43
2026-07-07T19:45:14,472   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/e5/20/f5a1fa4d2aefbdfe49e8b37034a9e9231cd45e3d8731aea0e18c5b2d2163/oncoref-1.8.44-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,472   Found link https://files.pythonhosted.org/packages/4a/2d/e55840f914f86dbec0a82a6ac55d4c1b350295d0df496f8c25627e204ab3/oncoref-1.8.44.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.44
2026-07-07T19:45:14,473   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/e4/1a/ccca0ca0b17f1330aadd47c6c445d0c17308f1f42368200d391cb5d6abf8/oncoref-1.8.45-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,474   Found link https://files.pythonhosted.org/packages/c1/c2/5d5a4bcf568fff94a1b46473555daf9cbae704a0490f95ed2ed81d0ff4cd/oncoref-1.8.45.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.45
2026-07-07T19:45:14,475   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/73/25/4f1d4c25357f47a26b79e9fe1b254c9f5cf002b4c11041962e56389b1c15/oncoref-1.8.46-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,476   Found link https://files.pythonhosted.org/packages/2a/8d/eb3cc099272116d3566db38d27c9694a284c4e4049f320672def1e6a3bda/oncoref-1.8.46.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.46
2026-07-07T19:45:14,476   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/14/4f/30c94e2ada7c5597c8650248ff53db5e69befee09cc38fe838c61a9e51d9/oncoref-1.8.47-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
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2026-07-07T19:45:14,479   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/0f/ec/306cb96db7e2089330c004c72787e9e1ce843205125ad86decee0f228c24/oncoref-1.8.49-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
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2026-07-07T19:45:14,481   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/43/dd/407a3b1ea8e041e8ab1db02683a47edced45c675544df4639ad88aad2012/oncoref-1.8.50-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
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2026-07-07T19:45:14,498   Found link https://files.pythonhosted.org/packages/e8/45/b4db591db89ea592dac41a9d1293f79480e60dbdf61b03b047eadf5a74d8/oncoref-1.8.60.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.60
2026-07-07T19:45:14,498   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5a/00/07da57189617ad0f311eaa45393ee60391e4e7c29e0c7d359f36147e78a5/oncoref-1.8.61-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,499   Found link https://files.pythonhosted.org/packages/af/94/6e35cee97fc1b52f4a9d48a5fff9a36c798414b6bd00d9fcfd0ec8e83f28/oncoref-1.8.61.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.61
2026-07-07T19:45:14,500   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/d9/da/4d452391d0e9c8f3f13ba10c97420e1d480fe54b82ec0e851c84d07d974b/oncoref-1.8.62-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,501   Found link https://files.pythonhosted.org/packages/c7/f5/2acb3162436bcea5f03b3f73c07e3556082f729f2ad9116185103b360f54/oncoref-1.8.62.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.62
2026-07-07T19:45:14,502   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/8f/67/53e22141f7ca7fae530b8d764a86c207226803d3f923401014c60a9db83b/oncoref-1.8.63-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,503   Found link https://files.pythonhosted.org/packages/4f/2c/84698b57528793591701fb3db2701d26328e48bc1bd63419a2a9bf79d03f/oncoref-1.8.63.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.63
2026-07-07T19:45:14,504   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/a0/1e/08407aebe96881b6ad78c0c8467a74439f779d6d1edbd5f8394deda2b587/oncoref-1.8.64-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,505   Found link https://files.pythonhosted.org/packages/97/2e/10502d15e08d7b33db2e83ed2c91831d061bc056079a608fe7b63da9d243/oncoref-1.8.64.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.64
2026-07-07T19:45:14,506   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/17/5f/c23707e5c232a396411573663d2ec9b91710e98bfa08bf2a3ca518329017/oncoref-1.8.65-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,507   Found link https://files.pythonhosted.org/packages/db/b8/83e10aefcada3447825141ed5930ca189abe9c5650b82a7cc4e432db8e08/oncoref-1.8.65.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.65
2026-07-07T19:45:14,507   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/14/7a/bc30118d3352e904950b65c6eab71934b20201b865963fc77f7bccd5557f/oncoref-1.8.66-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,508   Found link https://files.pythonhosted.org/packages/6e/02/92a7469d50bdfd44c6ff1df2ccb750b828cbac3c1dc9c7ab574d14e29785/oncoref-1.8.66.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.66
2026-07-07T19:45:14,509   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/81/76/9fa3812635cece9789250c7873e8355a5a6966b7051ada72ef8e60bdab51/oncoref-1.8.67-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,510   Found link https://files.pythonhosted.org/packages/6b/cd/e9ee85bbdc960a70560d649f696022d0ac4933b79b7751b85ef30baecffd/oncoref-1.8.67.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.67
2026-07-07T19:45:14,510   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/52/6d/df730d723f20e3fdb1068c4fb1fe0d72d387e5ea221136aaa40bcc5fda26/oncoref-1.8.68-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,511   Found link https://files.pythonhosted.org/packages/e1/b2/ffb6d9bfc1a89aaaf448f97dc3cf7ed764c939e3a8019d9e036d9d6e43a4/oncoref-1.8.68.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.68
2026-07-07T19:45:14,512   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/0e/a9/4ddf844785651ebf9ae5d231b2c40072b81529676ec5bce59aca3e605716/oncoref-1.8.69-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,513   Found link https://files.pythonhosted.org/packages/c9/d1/5d93cc2270041af9ea0dd46ef2fc3ca55d47fd57a8f5b26920e40d306bbe/oncoref-1.8.69.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.69
2026-07-07T19:45:14,513   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2d/42/42234081d002f130c7941f38f3acd2e5c89f04587f91d10a0e52c77f71fe/oncoref-1.8.70-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,514   Found link https://files.pythonhosted.org/packages/95/f3/26d19c175ba0b2506ce3fab7fcc5f5f0ab3fe3f613e779154fbed0d553d2/oncoref-1.8.70.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.70
2026-07-07T19:45:14,515   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/dc/d1/7427623f45b9c683d1d8bca192afe2c07b38f44dcbbc7dca454166174016/oncoref-1.8.71-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,516   Found link https://files.pythonhosted.org/packages/e2/06/a0e134387e746f6fdf1899ea46ebaed64f03b32ee11dffead902959d799d/oncoref-1.8.71.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.71
2026-07-07T19:45:14,517   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/91/e8/4d517d0660ccc23d8a1cebde34dbc6025d6ee3f9824a5093f08771869951/oncoref-1.8.72-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,518   Found link https://files.pythonhosted.org/packages/2c/fd/920ec6f8d81c8aacbc37b663390c2ee8d7b85c7f43275f49e8e3c46cd208/oncoref-1.8.72.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.72
2026-07-07T19:45:14,518   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/65/47/93060bb791932af90668935fb691e0be07185c976e5323784ff0e0d04a46/oncoref-1.8.73-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,519   Found link https://files.pythonhosted.org/packages/3d/a7/93aea3a58d7ca29048c49148999f2a3da1ce4b2a1cfccd52979f38c31f67/oncoref-1.8.73.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.73
2026-07-07T19:45:14,520   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/52/fa/e4562bca0539188a2bb8342853a68e9a779d0cdbdc64dccb14849ce6f9bb/oncoref-1.8.74-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,521   Found link https://files.pythonhosted.org/packages/d2/54/90b8312353ee7a3fb973acc75fc6cacc5a0ad87f0f3afff31dae2139a763/oncoref-1.8.74.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.74
2026-07-07T19:45:14,521   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/4c/a5/fdcd7292f0e864bfb41159d3911eef329ad68e3ea1e2c0f03fc6b8a35a33/oncoref-1.8.75-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,522   Found link https://files.pythonhosted.org/packages/3a/7f/41e37b1b382be9d1b51a2f9412f7eb6e13732676263bb5794b3074136ae3/oncoref-1.8.75.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.75
2026-07-07T19:45:14,523   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/fa/3d/23962e6f615bcef0fb72f647d7bf1c36d911e2fae6e8c09e28c8fdae4c6a/oncoref-1.8.76-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,524   Found link https://files.pythonhosted.org/packages/30/c2/956670f34940b2c734ebb252bf865ead4b2e4b178c96c894b1e7bb048dab/oncoref-1.8.76.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.76
2026-07-07T19:45:14,525   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f0/ec/51b375be988d23e85401ccd276d3f6cd9a91dde50017130a69fc3b22b086/oncoref-1.8.77-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,525   Found link https://files.pythonhosted.org/packages/33/b5/f8e0c83ad3be5ef8781371ef01050e68659128914d1853d70aec6302969f/oncoref-1.8.77.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.77
2026-07-07T19:45:14,526   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f1/21/3e589ce3efbfeb4e24e425138dba281517c888c5832dbeff8fd72daa4207/oncoref-1.8.78-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,527   Found link https://files.pythonhosted.org/packages/a2/c6/ce93fce0d9f3aea6ea8248f9ebd86e10115a60b1fe0fc667b50d73721685/oncoref-1.8.78.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.78
2026-07-07T19:45:14,528   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/91/92/8bdee5917c8cf33de38287e34cc36fcb759ce79a8695e374ae2d3c758964/oncoref-1.8.79-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,529   Found link https://files.pythonhosted.org/packages/30/3f/437e6d6f201068678b656a27ac92d383459fad27f53f37734e424d76afa8/oncoref-1.8.79.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.79
2026-07-07T19:45:14,530   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/aa/a4/d2f5121e0f97bae13fc475b8aa8770fe9caf84956a4730f7d0488ff28e62/oncoref-1.8.80-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,531   Found link https://files.pythonhosted.org/packages/b9/5c/3179bc832a51ae2dad143dd633ccfeadf05d44d6f5960914a7862848b722/oncoref-1.8.80.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.80
2026-07-07T19:45:14,531   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/03/cf/630c2e3ea7e2500e64d7c68b78819d1db913ddf93b653ca5a6953d607cd1/oncoref-1.8.81-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,533   Found link https://files.pythonhosted.org/packages/d1/ca/926b6bbe3f9de3e93268b5713565d1ffa87ab31fd7789dc03860f1684c27/oncoref-1.8.81.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.81
2026-07-07T19:45:14,533   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/1d/b9/5e3fa27d9f6dd23efed3b27446645e00793a73842cad14ddf7b478cffd45/oncoref-1.8.82-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,534   Found link https://files.pythonhosted.org/packages/bc/80/35a34942f2c068b2694603bc2f4c23629b9746aa1be4a02086ade09f8285/oncoref-1.8.82.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.82
2026-07-07T19:45:14,535   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/48/28/903d34d91a8c40359216094e0fa92a09f44a5cbbc9e52a407c91ecd6bab9/oncoref-1.8.83-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,535   Found link https://files.pythonhosted.org/packages/96/26/0ec0ec1e902ff5fe85e0c2d8235142472510a8d917907a425419508f8224/oncoref-1.8.83.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.83
2026-07-07T19:45:14,536   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/bc/10/cd6b678013dea36d34a87a287710341b8c582dc3230f41d9210edeb6351f/oncoref-1.8.84-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,537   Found link https://files.pythonhosted.org/packages/aa/5b/c531a85d7111918d43e4f6c34c2e2ac6d9cc3f01d159ff1f67a44babdc99/oncoref-1.8.84.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.84
2026-07-07T19:45:14,538   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/ba/2992c86826dbb7fb89e44368087a2b0408ca7e3ae5a0673cb1609804a6ec/oncoref-1.8.85-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,539   Found link https://files.pythonhosted.org/packages/16/6a/93e0dff0042ff9beb8babc8f56c94d516b809df6cf993a6258f8809f00c1/oncoref-1.8.85.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.85
2026-07-07T19:45:14,539   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ec/ac/924c699462f9dc590cb8bb88f9851564001b65596155e54a89a0fcf46726/oncoref-1.8.86-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,540   Found link https://files.pythonhosted.org/packages/cb/23/987fbfe1b9e709ba6369b6f9cbc6a976e7a56067a7e9f65be41627e46b71/oncoref-1.8.86.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.86
2026-07-07T19:45:14,541   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2c/bf/71f98fa8c8e85dcbcd77f9370e8a01d2253839bd9a99d31d4fe653a7066b/oncoref-1.8.87-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,542   Found link https://files.pythonhosted.org/packages/40/b8/1cd48725039dedff68abcab73376a015048d02cdcfa506419417569b7cfa/oncoref-1.8.87.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.87
2026-07-07T19:45:14,543 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/
2026-07-07T19:45:14,543 Getting page https://www.piwheels.org/simple/oncoref/
2026-07-07T19:45:14,545 Found index url https://www.piwheels.org/simple
2026-07-07T19:45:14,730 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html
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2026-07-07T19:45:14,750   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.68-py3-none-any.whl#sha256=a43fc5a9e46c5ddbe4bbf523ceb49aad2c3307afe81b6d520530d41c6edc167d (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,751   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.67-py3-none-any.whl#sha256=8108e78b77586e5a23ac588f3db28ab0cca48345b7530c98968c390813706c00 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,751   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.66-py3-none-any.whl#sha256=dc4b497443f4614935e5240b85202cde7f0e695c9f21a4bb634057d527287764 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,752   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.65-py3-none-any.whl#sha256=0b8917061d9f6b2f5ca930d8caf6c2274e48850320c27075f0a929b08cead8aa (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
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2026-07-07T19:45:14,753   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.63-py3-none-any.whl#sha256=120f9dd44c4bb111e25b0c8f6b4db3a2fd88aa3a88e2d29539514ff834a1c15a (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
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2026-07-07T19:45:14,787   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,788   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,788   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,789   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,789   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,790   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,791   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-07-07T19:45:14,791 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/
2026-07-07T19:45:14,792 Skipping link: not a file: https://pypi.org/simple/oncoref/
2026-07-07T19:45:14,823 Given no hashes to check 1 links for project 'oncoref': discarding no candidates
2026-07-07T19:45:14,842 Collecting oncoref==1.8.70
2026-07-07T19:45:14,845   Created temporary directory: /tmp/pip-unpack-s03l1ot4
2026-07-07T19:45:14,995   Downloading oncoref-1.8.70.tar.gz (1.8 MB)
2026-07-07T19:45:15,614   Added oncoref==1.8.70 from https://files.pythonhosted.org/packages/95/f3/26d19c175ba0b2506ce3fab7fcc5f5f0ab3fe3f613e779154fbed0d553d2/oncoref-1.8.70.tar.gz to build tracker '/tmp/pip-build-tracker-bff4k5do'
2026-07-07T19:45:15,621   Created temporary directory: /tmp/pip-build-env-njl9kei4
2026-07-07T19:45:15,625   Installing build dependencies: started
2026-07-07T19:45:15,627   Running command pip subprocess to install build dependencies
2026-07-07T19:45:16,790   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-07-07T19:45:17,201   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-07-07T19:45:17,225   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-07-07T19:45:19,031   Collecting setuptools>=61.0
2026-07-07T19:45:19,031     Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata
2026-07-07T19:45:19,046     Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata (6.6 kB)
2026-07-07T19:45:19,282   Collecting wheel
2026-07-07T19:45:19,283     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata
2026-07-07T19:45:19,297     Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
2026-07-07T19:45:19,481   Collecting packaging>=24.0
2026-07-07T19:45:19,482     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata
2026-07-07T19:45:19,495     Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB)
2026-07-07T19:45:19,683   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-07-07T19:45:19,702   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-07-07T19:45:19,789   Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB)
2026-07-07T19:45:19,821   Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB)
2026-07-07T19:45:19,844   Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB)
2026-07-07T19:45:19,935   Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB)
2026-07-07T19:45:22,686   Installing collected packages: setuptools, packaging, wheel
2026-07-07T19:45:26,107     Creating /tmp/pip-build-env-njl9kei4/overlay/local/bin
2026-07-07T19:45:26,109     changing mode of /tmp/pip-build-env-njl9kei4/overlay/local/bin/wheel to 755
2026-07-07T19:45:26,131   Successfully installed packaging-26.2 setuptools-83.0.0 wheel-0.47.0
2026-07-07T19:45:26,418   Installing build dependencies: finished with status 'done'
2026-07-07T19:45:26,425   Getting requirements to build wheel: started
2026-07-07T19:45:26,426   Running command Getting requirements to build wheel
2026-07-07T19:45:27,098   running egg_info
2026-07-07T19:45:27,104   writing oncoref.egg-info/PKG-INFO
2026-07-07T19:45:27,109   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-07-07T19:45:27,111   writing entry points to oncoref.egg-info/entry_points.txt
2026-07-07T19:45:27,113   writing requirements to oncoref.egg-info/requires.txt
2026-07-07T19:45:27,114   writing top-level names to oncoref.egg-info/top_level.txt
2026-07-07T19:45:27,149   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-07-07T19:45:27,158   reading manifest template 'MANIFEST.in'
2026-07-07T19:45:27,160   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-07-07T19:45:27,161   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-07-07T19:45:27,163   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-07-07T19:45:27,164   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-07-07T19:45:27,165   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-07-07T19:45:27,166   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-07-07T19:45:27,167   adding license file 'LICENSE'
2026-07-07T19:45:27,175   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-07-07T19:45:27,274   Getting requirements to build wheel: finished with status 'done'
2026-07-07T19:45:27,278   Created temporary directory: /tmp/pip-modern-metadata-7o2bue_x
2026-07-07T19:45:27,280   Preparing metadata (pyproject.toml): started
2026-07-07T19:45:27,281   Running command Preparing metadata (pyproject.toml)
2026-07-07T19:45:27,908   running dist_info
2026-07-07T19:45:27,918   creating /tmp/pip-modern-metadata-7o2bue_x/oncoref.egg-info
2026-07-07T19:45:27,919   writing /tmp/pip-modern-metadata-7o2bue_x/oncoref.egg-info/PKG-INFO
2026-07-07T19:45:27,925   writing dependency_links to /tmp/pip-modern-metadata-7o2bue_x/oncoref.egg-info/dependency_links.txt
2026-07-07T19:45:27,927   writing entry points to /tmp/pip-modern-metadata-7o2bue_x/oncoref.egg-info/entry_points.txt
2026-07-07T19:45:27,929   writing requirements to /tmp/pip-modern-metadata-7o2bue_x/oncoref.egg-info/requires.txt
2026-07-07T19:45:27,930   writing top-level names to /tmp/pip-modern-metadata-7o2bue_x/oncoref.egg-info/top_level.txt
2026-07-07T19:45:27,931   writing manifest file '/tmp/pip-modern-metadata-7o2bue_x/oncoref.egg-info/SOURCES.txt'
2026-07-07T19:45:27,963   reading manifest file '/tmp/pip-modern-metadata-7o2bue_x/oncoref.egg-info/SOURCES.txt'
2026-07-07T19:45:27,965   reading manifest template 'MANIFEST.in'
2026-07-07T19:45:27,967   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-07-07T19:45:27,968   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-07-07T19:45:27,969   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-07-07T19:45:27,970   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-07-07T19:45:27,971   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-07-07T19:45:27,972   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-07-07T19:45:27,972   adding license file 'LICENSE'
2026-07-07T19:45:27,978   writing manifest file '/tmp/pip-modern-metadata-7o2bue_x/oncoref.egg-info/SOURCES.txt'
2026-07-07T19:45:27,980   creating '/tmp/pip-modern-metadata-7o2bue_x/oncoref-1.8.70.dist-info'
2026-07-07T19:45:28,104   Preparing metadata (pyproject.toml): finished with status 'done'
2026-07-07T19:45:28,109   Source in /tmp/pip-wheel-fi72h_d5/oncoref_257abe9e980e4d72b40a7d47a94ef9cf has version 1.8.70, which satisfies requirement oncoref==1.8.70 from https://files.pythonhosted.org/packages/95/f3/26d19c175ba0b2506ce3fab7fcc5f5f0ab3fe3f613e779154fbed0d553d2/oncoref-1.8.70.tar.gz
2026-07-07T19:45:28,110   Removed oncoref==1.8.70 from https://files.pythonhosted.org/packages/95/f3/26d19c175ba0b2506ce3fab7fcc5f5f0ab3fe3f613e779154fbed0d553d2/oncoref-1.8.70.tar.gz from build tracker '/tmp/pip-build-tracker-bff4k5do'
2026-07-07T19:45:28,116 Created temporary directory: /tmp/pip-unpack-u7rgvm7w
2026-07-07T19:45:28,117 Building wheels for collected packages: oncoref
2026-07-07T19:45:28,121   Created temporary directory: /tmp/pip-wheel-fqook3ya
2026-07-07T19:45:28,121   Destination directory: /tmp/pip-wheel-fqook3ya
2026-07-07T19:45:28,123   Building wheel for oncoref (pyproject.toml): started
2026-07-07T19:45:28,124   Running command Building wheel for oncoref (pyproject.toml)
2026-07-07T19:45:28,735   running bdist_wheel
2026-07-07T19:45:28,752   running build
2026-07-07T19:45:28,753   running build_py
2026-07-07T19:45:28,760   creating build/lib/oncoref
2026-07-07T19:45:28,762   copying oncoref/data_bundle.py -> build/lib/oncoref
2026-07-07T19:45:28,764   copying oncoref/__init__.py -> build/lib/oncoref
2026-07-07T19:45:28,767   copying oncoref/proteoforms.py -> build/lib/oncoref
2026-07-07T19:45:28,770   copying oncoref/reference_data.py -> build/lib/oncoref
2026-07-07T19:45:28,772   copying oncoref/coverage.py -> build/lib/oncoref
2026-07-07T19:45:28,774   copying oncoref/normalization.py -> build/lib/oncoref
2026-07-07T19:45:28,777   copying oncoref/antigen_coverage.py -> build/lib/oncoref
2026-07-07T19:45:28,779   copying oncoref/expression.py -> build/lib/oncoref
2026-07-07T19:45:28,783   copying oncoref/cta_peptides.py -> build/lib/oncoref
2026-07-07T19:45:28,784   copying oncoref/gene_families.py -> build/lib/oncoref
2026-07-07T19:45:28,787   copying oncoref/cta.py -> build/lib/oncoref
2026-07-07T19:45:28,789   copying oncoref/peptides.py -> build/lib/oncoref
2026-07-07T19:45:28,792   copying oncoref/incidence.py -> build/lib/oncoref
2026-07-07T19:45:28,794   copying oncoref/cancer_genes.py -> build/lib/oncoref
2026-07-07T19:45:28,796   copying oncoref/fusions.py -> build/lib/oncoref
2026-07-07T19:45:28,798   copying oncoref/ici.py -> build/lib/oncoref
2026-07-07T19:45:28,800   copying oncoref/expression_builders.py -> build/lib/oncoref
2026-07-07T19:45:28,803   copying oncoref/cli.py -> build/lib/oncoref
2026-07-07T19:45:28,806   copying oncoref/source_matrices.py -> build/lib/oncoref
2026-07-07T19:45:28,808   copying oncoref/cta_coverage.py -> build/lib/oncoref
2026-07-07T19:45:28,810   copying oncoref/plots.py -> build/lib/oncoref
2026-07-07T19:45:28,813   copying oncoref/tmb.py -> build/lib/oncoref
2026-07-07T19:45:28,815   copying oncoref/cta_curation_plots.py -> build/lib/oncoref
2026-07-07T19:45:28,817   copying oncoref/cta_tissues.py -> build/lib/oncoref
2026-07-07T19:45:28,819   copying oncoref/cancer_types.py -> build/lib/oncoref
2026-07-07T19:45:28,822   copying oncoref/version.py -> build/lib/oncoref
2026-07-07T19:45:28,824   copying oncoref/gene_qc.py -> build/lib/oncoref
2026-07-07T19:45:28,826   copying oncoref/cohorts.py -> build/lib/oncoref
2026-07-07T19:45:28,828   copying oncoref/expression_engine.py -> build/lib/oncoref
2026-07-07T19:45:28,831   copying oncoref/expression_registry.py -> build/lib/oncoref
2026-07-07T19:45:28,833   copying oncoref/ici_response.py -> build/lib/oncoref
2026-07-07T19:45:28,835   copying oncoref/genome.py -> build/lib/oncoref
2026-07-07T19:45:28,837   copying oncoref/load_dataset.py -> build/lib/oncoref
2026-07-07T19:45:28,839   copying oncoref/catalog.py -> build/lib/oncoref
2026-07-07T19:45:28,842   copying oncoref/gene_ids.py -> build/lib/oncoref
2026-07-07T19:45:28,844   copying oncoref/cta_regen.py -> build/lib/oncoref
2026-07-07T19:45:28,846   copying oncoref/response_signatures.py -> build/lib/oncoref
2026-07-07T19:45:28,848   copying oncoref/apd1.py -> build/lib/oncoref
2026-07-07T19:45:28,850   copying oncoref/samples.py -> build/lib/oncoref
2026-07-07T19:45:28,852   copying oncoref/hpa.py -> build/lib/oncoref
2026-07-07T19:45:28,854   copying oncoref/cancer_ontology.py -> build/lib/oncoref
2026-07-07T19:45:28,856   copying oncoref/data_manifest.py -> build/lib/oncoref
2026-07-07T19:45:28,870   creating build/lib/oncoref/data
2026-07-07T19:45:28,871   copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,874   copying oncoref/data/fusion-surrogate-expression.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,876   copying oncoref/data/cancer-lineage-groups.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,878   copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,881   copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,883   copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,885   copying oncoref/data/extra-tx-mappings.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,888   copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,897   copying oncoref/data/cancer-driver-variants.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,900   copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,903   copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,905   copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,910   copying oncoref/data/cancer-normal-tissue-map.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,913   copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,917   copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,920   copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,923   copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,926   copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,929   copying oncoref/data/hemoglobin-genes.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,931   copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,934   copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,937   copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,939   copying oncoref/data/cancer-response-signatures.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,942   copying oncoref/data/cancer-viral-antigens.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,945   copying oncoref/data/ensembl-id-aliases.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,953   copying oncoref/data/tissue-burden-map.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,955   copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,958   copying oncoref/data/expression-artifact-gene-universe-deltas.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,964   copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,967   copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,970   copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,972   copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,975   copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,978   copying oncoref/data/cancer-apd1-response.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,981   copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,983   copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,989   copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,992   copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,995   copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data
2026-07-07T19:45:28,999   copying oncoref/data/narrative-gene-sets.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,001   copying oncoref/data/cancer-incidence-mortality.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,004   copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,006   copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,009   copying oncoref/data/cancer-fusions.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,012   copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,015   copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,017   copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,020   copying oncoref/data/cancer-code-burden-map.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,023   copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,025   copying oncoref/data/rrna-and-pseudogenes.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,028   copying oncoref/data/cancer-cohort-aggregates.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,030   copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,034   copying oncoref/data/nuclear-retained-lncrnas.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,037   copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data
2026-07-07T19:45:29,039   copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data
2026-07-07T19:45:29,046   copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data
2026-07-07T19:45:29,054   copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data
2026-07-07T19:45:29,068   copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data
2026-07-07T19:45:29,083   installing to build/bdist.linux-armv7l/wheel
2026-07-07T19:45:29,083   running install
2026-07-07T19:45:29,107   running install_lib
2026-07-07T19:45:29,113   creating build/bdist.linux-armv7l/wheel
2026-07-07T19:45:29,117   creating build/bdist.linux-armv7l/wheel/oncoref
2026-07-07T19:45:29,118   copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,121   copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,125   copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,127   copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,130   copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,133   copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,136   copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,138   copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,142   copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,144   copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,146   copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,149   copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,151   copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,153   copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,155   copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,157   copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,160   copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,163   copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,165   copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,167   copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,169   copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,173   copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,176   creating build/bdist.linux-armv7l/wheel/oncoref/data
2026-07-07T19:45:29,177   copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,179   copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,182   copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,183   copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,186   copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,188   copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,190   copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,192   copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,196   copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,203   copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,206   copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,209   copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,211   copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,216   copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,218   copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,222   copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,225   copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,228   copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,230   copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,233   copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,241   copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,243   copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,245   copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,247   copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,249   copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,250   copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,252   copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,254   copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,263   copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,265   copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,267   copying build/lib/oncoref/data/expression-artifact-gene-universe-deltas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,274   copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,277   copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,279   copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,290   copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,293   copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,296   copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,298   copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,301   copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,304   copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,311   copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,314   copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,317   copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,322   copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,325   copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,327   copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,330   copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,333   copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,336   copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,338   copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,340   copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,343   copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,346   copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,348   copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,351   copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,353   copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,355   copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,358   copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-07-07T19:45:29,360   copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,363   copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,366   copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,371   copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,374   copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,377   copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,380   copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,384   copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,386   copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,389   copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,391   copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,395   copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,398   copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,402   copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,405   copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,408   copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,411   copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,414   copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,417   copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,420   copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-07-07T19:45:29,423   running install_egg_info
2026-07-07T19:45:29,436   running egg_info
2026-07-07T19:45:29,444   writing oncoref.egg-info/PKG-INFO
2026-07-07T19:45:29,451   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-07-07T19:45:29,453   writing entry points to oncoref.egg-info/entry_points.txt
2026-07-07T19:45:29,457   writing requirements to oncoref.egg-info/requires.txt
2026-07-07T19:45:29,459   writing top-level names to oncoref.egg-info/top_level.txt
2026-07-07T19:45:29,479   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-07-07T19:45:29,489   reading manifest template 'MANIFEST.in'
2026-07-07T19:45:29,491   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-07-07T19:45:29,493   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-07-07T19:45:29,495   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-07-07T19:45:29,496   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-07-07T19:45:29,498   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-07-07T19:45:29,499   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-07-07T19:45:29,500   adding license file 'LICENSE'
2026-07-07T19:45:29,508   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-07-07T19:45:29,511   Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.8.70-py3.11.egg-info
2026-07-07T19:45:29,524   running install_scripts
2026-07-07T19:45:29,536   creating build/bdist.linux-armv7l/wheel/oncoref-1.8.70.dist-info/WHEEL
2026-07-07T19:45:29,539   creating '/tmp/pip-wheel-fqook3ya/.tmp-b93vl0j4/oncoref-1.8.70-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-07-07T19:45:29,544   adding 'oncoref/__init__.py'
2026-07-07T19:45:29,546   adding 'oncoref/antigen_coverage.py'
2026-07-07T19:45:29,548   adding 'oncoref/apd1.py'
2026-07-07T19:45:29,550   adding 'oncoref/cancer_genes.py'
2026-07-07T19:45:29,552   adding 'oncoref/cancer_ontology.py'
2026-07-07T19:45:29,559   adding 'oncoref/cancer_types.py'
2026-07-07T19:45:29,562   adding 'oncoref/catalog.py'
2026-07-07T19:45:29,566   adding 'oncoref/cli.py'
2026-07-07T19:45:29,568   adding 'oncoref/cohorts.py'
2026-07-07T19:45:29,571   adding 'oncoref/coverage.py'
2026-07-07T19:45:29,574   adding 'oncoref/cta.py'
2026-07-07T19:45:29,576   adding 'oncoref/cta_coverage.py'
2026-07-07T19:45:29,578   adding 'oncoref/cta_curation_plots.py'
2026-07-07T19:45:29,580   adding 'oncoref/cta_peptides.py'
2026-07-07T19:45:29,583   adding 'oncoref/cta_regen.py'
2026-07-07T19:45:29,585   adding 'oncoref/cta_tissues.py'
2026-07-07T19:45:29,589   adding 'oncoref/data_bundle.py'
2026-07-07T19:45:29,592   adding 'oncoref/data_manifest.py'
2026-07-07T19:45:29,607   adding 'oncoref/expression.py'
2026-07-07T19:45:29,611   adding 'oncoref/expression_builders.py'
2026-07-07T19:45:29,614   adding 'oncoref/expression_engine.py'
2026-07-07T19:45:29,616   adding 'oncoref/expression_registry.py'
2026-07-07T19:45:29,618   adding 'oncoref/fusions.py'
2026-07-07T19:45:29,621   adding 'oncoref/gene_families.py'
2026-07-07T19:45:29,624   adding 'oncoref/gene_ids.py'
2026-07-07T19:45:29,626   adding 'oncoref/gene_qc.py'
2026-07-07T19:45:29,628   adding 'oncoref/genome.py'
2026-07-07T19:45:29,630   adding 'oncoref/hpa.py'
2026-07-07T19:45:29,635   adding 'oncoref/ici.py'
2026-07-07T19:45:29,637   adding 'oncoref/ici_response.py'
2026-07-07T19:45:29,639   adding 'oncoref/incidence.py'
2026-07-07T19:45:29,641   adding 'oncoref/load_dataset.py'
2026-07-07T19:45:29,646   adding 'oncoref/normalization.py'
2026-07-07T19:45:29,649   adding 'oncoref/peptides.py'
2026-07-07T19:45:29,657   adding 'oncoref/plots.py'
2026-07-07T19:45:29,660   adding 'oncoref/proteoforms.py'
2026-07-07T19:45:29,663   adding 'oncoref/reference_data.py'
2026-07-07T19:45:29,665   adding 'oncoref/response_signatures.py'
2026-07-07T19:45:29,666   adding 'oncoref/samples.py'
2026-07-07T19:45:29,668   adding 'oncoref/source_matrices.py'
2026-07-07T19:45:29,671   adding 'oncoref/tmb.py'
2026-07-07T19:45:29,672   adding 'oncoref/version.py'
2026-07-07T19:45:29,676   adding 'oncoref/data/cancer-apd1-response.csv'
2026-07-07T19:45:29,678   adding 'oncoref/data/cancer-code-burden-map.csv'
2026-07-07T19:45:29,679   adding 'oncoref/data/cancer-cohort-aggregates.csv'
2026-07-07T19:45:29,685   adding 'oncoref/data/cancer-driver-genes.csv'
2026-07-07T19:45:29,688   adding 'oncoref/data/cancer-driver-variants.csv'
2026-07-07T19:45:29,690   adding 'oncoref/data/cancer-expression-source-candidates.csv'
2026-07-07T19:45:29,692   adding 'oncoref/data/cancer-frameshift-burden.csv'
2026-07-07T19:45:29,696   adding 'oncoref/data/cancer-fusions.csv'
2026-07-07T19:45:29,714   adding 'oncoref/data/cancer-ici-response-estimates.csv'
2026-07-07T19:45:29,718   adding 'oncoref/data/cancer-ici-response.csv'
2026-07-07T19:45:29,720   adding 'oncoref/data/cancer-incidence-mortality.csv'
2026-07-07T19:45:29,735   adding 'oncoref/data/cancer-key-genes.csv'
2026-07-07T19:45:29,738   adding 'oncoref/data/cancer-lineage-group-overrides.csv'
2026-07-07T19:45:29,740   adding 'oncoref/data/cancer-lineage-groups.csv'
2026-07-07T19:45:29,742   adding 'oncoref/data/cancer-normal-tissue-map.csv'
2026-07-07T19:45:29,772   adding 'oncoref/data/cancer-reference-expression-samples.csv.gz'
2026-07-07T19:45:29,774   adding 'oncoref/data/cancer-response-signatures.csv'
2026-07-07T19:45:29,776   adding 'oncoref/data/cancer-subtype-groupings.csv'
2026-07-07T19:45:29,787   adding 'oncoref/data/cancer-testis-antigens.csv'
2026-07-07T19:45:29,790   adding 'oncoref/data/cancer-tmb.csv'
2026-07-07T19:45:29,792   adding 'oncoref/data/cancer-type-genes.csv'
2026-07-07T19:45:29,796   adding 'oncoref/data/cancer-type-registry.csv'
2026-07-07T19:45:29,798   adding 'oncoref/data/cancer-viral-antigens.csv'
2026-07-07T19:45:29,850   adding 'oncoref/data/canonical-gene-space.csv.gz'
2026-07-07T19:45:29,855   adding 'oncoref/data/cdna-identical-gene-groups.csv'
2026-07-07T19:45:29,859   adding 'oncoref/data/censored-gene-reference-tpm.csv'
2026-07-07T19:45:29,861   adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv'
2026-07-07T19:45:29,871   adding 'oncoref/data/clean-tpm-censored-genes.csv'
2026-07-07T19:45:29,874   adding 'oncoref/data/cohort-registry.csv'
2026-07-07T19:45:29,875   adding 'oncoref/data/cta-candidate-references.csv'
2026-07-07T19:45:29,876   adding 'oncoref/data/cta-ihc-unreliable.csv'
2026-07-07T19:45:29,878   adding 'oncoref/data/degenerate-subtype-pairs.csv'
2026-07-07T19:45:29,879   adding 'oncoref/data/disease-state-rules.csv'
2026-07-07T19:45:29,906   adding 'oncoref/data/ensembl-id-aliases.csv'
2026-07-07T19:45:29,918   adding 'oncoref/data/expression-artifact-gene-universe-deltas.csv'
2026-07-07T19:45:29,924   adding 'oncoref/data/expression_sources.yaml'
2026-07-07T19:45:29,925   adding 'oncoref/data/extra-tx-mappings.csv'
2026-07-07T19:45:29,926   adding 'oncoref/data/family-burden-map.csv'
2026-07-07T19:45:29,928   adding 'oncoref/data/fusion-expression-effects.csv'
2026-07-07T19:45:29,929   adding 'oncoref/data/fusion-surrogate-expression.csv'
2026-07-07T19:45:29,931   adding 'oncoref/data/hemoglobin-genes.csv'
2026-07-07T19:45:29,932   adding 'oncoref/data/histone-genes.csv'
2026-07-07T19:45:29,933   adding 'oncoref/data/housekeeping-genes.csv'
2026-07-07T19:45:29,935   adding 'oncoref/data/mitochondrial-genes.csv'
2026-07-07T19:45:29,936   adding 'oncoref/data/narrative-gene-sets.csv'
2026-07-07T19:45:29,976   adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz'
2026-07-07T19:45:29,980   adding 'oncoref/data/nuclear-retained-lncrnas.csv'
2026-07-07T19:45:29,982   adding 'oncoref/data/numt-pseudogenes.csv'
2026-07-07T19:45:29,983   adding 'oncoref/data/proteoform-collapse-overrides.csv'
2026-07-07T19:45:29,985   adding 'oncoref/data/proteoform-groups-genome.csv'
2026-07-07T19:45:29,987   adding 'oncoref/data/proteoform-groups.csv'
2026-07-07T19:45:29,989   adding 'oncoref/data/rare-cancer-fusion-rules.csv'
2026-07-07T19:45:29,990   adding 'oncoref/data/ribosomal-protein-genes.csv'
2026-07-07T19:45:29,997   adding 'oncoref/data/ribosomal-protein-pseudogenes.csv'
2026-07-07T19:45:29,999   adding 'oncoref/data/rrna-and-pseudogenes.csv'
2026-07-07T19:45:30,018   adding 'oncoref/data/small-noncoding-rnas.csv'
2026-07-07T19:45:30,020   adding 'oncoref/data/source-matrices.csv'
2026-07-07T19:45:30,021   adding 'oncoref/data/tissue-burden-map.csv'
2026-07-07T19:45:30,025   adding 'oncoref-1.8.70.dist-info/licenses/LICENSE'
2026-07-07T19:45:30,027   adding 'oncoref-1.8.70.dist-info/METADATA'
2026-07-07T19:45:30,028   adding 'oncoref-1.8.70.dist-info/WHEEL'
2026-07-07T19:45:30,029   adding 'oncoref-1.8.70.dist-info/entry_points.txt'
2026-07-07T19:45:30,030   adding 'oncoref-1.8.70.dist-info/top_level.txt'
2026-07-07T19:45:30,032   adding 'oncoref-1.8.70.dist-info/RECORD'
2026-07-07T19:45:30,051   removing build/bdist.linux-armv7l/wheel
2026-07-07T19:45:30,171   Building wheel for oncoref (pyproject.toml): finished with status 'done'
2026-07-07T19:45:30,211   Created wheel for oncoref: filename=oncoref-1.8.70-py3-none-any.whl size=1710227 sha256=1a3fa9af21ac95ff3a3a385e0d5b5ae5e34e8efc14b5b388d63cc8b2136c7e30
2026-07-07T19:45:30,212   Stored in directory: /tmp/pip-ephem-wheel-cache-odhm6dpf/wheels/6a/2f/93/35d86022b5478785779274dcf8c458d9ffd4313e972a48f0c2
2026-07-07T19:45:30,228 Successfully built oncoref
2026-07-07T19:45:30,271 Removed build tracker: '/tmp/pip-build-tracker-bff4k5do'