2026-07-15T07:37:05,307 Created temporary directory: /tmp/pip-ephem-wheel-cache-zpe5twgg 2026-07-15T07:37:05,309 Created temporary directory: /tmp/pip-build-tracker-0gancnum 2026-07-15T07:37:05,310 Initialized build tracking at /tmp/pip-build-tracker-0gancnum 2026-07-15T07:37:05,310 Created build tracker: /tmp/pip-build-tracker-0gancnum 2026-07-15T07:37:05,311 Entered build tracker: /tmp/pip-build-tracker-0gancnum 2026-07-15T07:37:05,312 Created temporary directory: /tmp/pip-wheel-7lw03pp8 2026-07-15T07:37:05,314 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-15T07:37:05,317 Created temporary directory: /tmp/pip-ephem-wheel-cache-glbt43_0 2026-07-15T07:37:05,339 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-15T07:37:05,343 2 location(s) to search for versions of fibsem: 2026-07-15T07:37:05,343 * https://pypi.org/simple/fibsem/ 2026-07-15T07:37:05,343 * https://www.piwheels.org/simple/fibsem/ 2026-07-15T07:37:05,344 Fetching project page and analyzing links: https://pypi.org/simple/fibsem/ 2026-07-15T07:37:05,344 Getting page https://pypi.org/simple/fibsem/ 2026-07-15T07:37:05,346 Found index url https://pypi.org/simple 2026-07-15T07:37:05,573 Fetched page https://pypi.org/simple/fibsem/ as application/vnd.pypi.simple.v1+json 2026-07-15T07:37:05,584 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/4c/cf/0ed2a796e278cf9de3d52e287cc7d8d9892c21c0a00920a9ff30f5033a56/fibsem-0.2.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,585 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ad/73/b8cf8db0dba6e191be400b025e534b4f6d7d18c39d86428101720ee58e4e/fibsem-0.2.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,586 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d7/30/b93e42954d23659272a1b8ac6f3dd60da6eff0df55fc4d31bb515f6934eb/fibsem-0.2.2a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,586 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/c8/8f/4bfbe20bfa2ca615b74ad68a1317c1b61df9a93f5f8c9df9e223c9b20623/fibsem-0.2.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,587 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/7c/63/681df259de02d04424d8e71530649f0949504d5b31aaf5086651b5804d0c/fibsem-0.2.3a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,588 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/36/98/67400e49fe61d7e9e58d04099a516c039d4493a9ce346276a2cb37774dcd/fibsem-0.2.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,589 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/39/cc/5b8579067af3dc74509ceaba38d5117cde72f44a85ca8bcc56f5ebee7260/fibsem-0.2.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,589 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/43/13/625dba2d4741c02a3e6c970399a725b644b9a058dadb2f5fea9e9420b4e3/fibsem-0.2.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,590 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/87/1d/1562b356490f6c485f927c52d4b36e774bd5b9588d7a8da4a3dc9432db01/fibsem-0.3.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,591 Found link https://files.pythonhosted.org/packages/ad/3e/400c07e0574bbab09f711951db2f6ad3f367a8feff8f6cbafa7af89fd67a/fibsem-0.3.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a0 2026-07-15T07:37:05,592 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/df/fb/4bad22a49352a49befdb7d1513163de5d8d1a4cfb0e60fa3ac4c67f20482/fibsem-0.3.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,593 Found link https://files.pythonhosted.org/packages/4e/58/d870caa49f7754b016226db2b7f0ec101164622fc2e82511e7bae7f95af6/fibsem-0.3.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a1 2026-07-15T07:37:05,594 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/05/51/0a0cc14778c2ae7f68a601aa26821327fc35e08bc81546ba6e3d10bc704f/fibsem-0.3.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,595 Found link https://files.pythonhosted.org/packages/fc/2b/fea39a412194d35634c6d7f2e0768021aa0f024b880a17251a3f377e1c5c/fibsem-0.3.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0 2026-07-15T07:37:05,595 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/32/8b/d53be8a146bfa866e850b13e6b80977d4c1bc527852fc4d0c0cfe0b6fc56/fibsem-0.3.1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,596 Found link https://files.pythonhosted.org/packages/52/84/03322d031fa283e8c468f6e706d59b3efe59dbb4e2341ffa012c5f68c127/fibsem-0.3.1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.1 2026-07-15T07:37:05,597 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/07/65/22b4f873c57c647b123c552214de8f533f12706e6ff2b419f08b02c6f421/fibsem-0.3.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,598 Found link https://files.pythonhosted.org/packages/78/de/5da6cf780c6ae414322a1fd3ae2f80223b2ab197b5045886658688b67986/fibsem-0.3.2a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2a1 2026-07-15T07:37:05,599 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/f1/9d/ddd526104faf19ad44ad941b136dc14a30e289abdfdffba15bc11d34580d/fibsem-0.3.2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,600 Found link https://files.pythonhosted.org/packages/ef/10/13c01c548f92955d5069ea9caebdd1023f876a338bc336ac42356f609ee3/fibsem-0.3.2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2 2026-07-15T07:37:05,601 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/11/d6/ca062c93720e61354700869b036fbf65a1c66d5ce32d7d6c4bc341aacc1b/fibsem-0.3.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,602 Found link https://files.pythonhosted.org/packages/4e/ae/8048dff3e2eeb2c922176c5c412f1aed2346897e814bb76d175a9c1cd82e/fibsem-0.3.3.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.3 2026-07-15T07:37:05,603 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/21/59/9dd2fd247baf0dcb2eed618b0f769f5bc1536091bc1496b73c0938f40c46/fibsem-0.3.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,604 Found link https://files.pythonhosted.org/packages/9f/62/1216f24d3f73e3d59fdd03335ac32354d65b09adf33df98bbe0e5557435c/fibsem-0.3.4.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.4 2026-07-15T07:37:05,604 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/33/da/3b0edd81d35e70a37a7c6971bc14cf6f1319bbb2f6134a154a8b28438ae7/fibsem-0.3.5a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,605 Found link https://files.pythonhosted.org/packages/3d/9c/ab22b6240afebb565dc876215d16bc04f542f0ff2e613c67b4672f9204c2/fibsem-0.3.5a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5a0 2026-07-15T07:37:05,606 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/0f/a4/5e57da3c16013f96e4561ad7e626c80effe866291c940fec4e5fbae41422/fibsem-0.3.5a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,607 Found link https://files.pythonhosted.org/packages/f9/e9/9befd7e3843a21457f35f510c64de8e6838290535a98a395fa6e5908bf02/fibsem-0.3.5a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5a1 2026-07-15T07:37:05,608 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/75/eb/25cdfe7f1f81b41f7fbbd9cf96b56a98d7f4742591e5c3a8fb339a069a7d/fibsem-0.3.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,608 Found link https://files.pythonhosted.org/packages/8a/7e/10d7149bc1716834fedc742963e72fcc96bd285123f16709977bcb2684e9/fibsem-0.3.5.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5 2026-07-15T07:37:05,609 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ae/f8/9c2df761ed582f1c2c92c7c46b6ee4aa2a8f1619d6e401de8385fc6e00e9/fibsem-0.4.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,610 Found link https://files.pythonhosted.org/packages/64/12/714c2603b3b3b4ebcfac53ade0c2ed0d224ab2a8bd917afd9fe00d5413d5/fibsem-0.4.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0a0 2026-07-15T07:37:05,611 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/95/33/9eefd81e39af42a7532203895ed23f99a09f414d85b6e9284aa476b102bc/fibsem-0.4.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,612 Found link https://files.pythonhosted.org/packages/1e/5e/26a692b01fbe9c5364137c3148600c9e2233781c9a0e34c8bfe1da84893d/fibsem-0.4.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0a1 2026-07-15T07:37:05,612 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ec/ff/909e849d3be278770eb1508a10e2f939921f5ab95efa8c89a151c4521fa2/fibsem-0.4.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,613 Found link https://files.pythonhosted.org/packages/89/99/54e5d7dcca80171de48c15cffa723ebf5faf35d9200751a7b14f034219c9/fibsem-0.4.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0 2026-07-15T07:37:05,614 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/b7/54/92008c36160b8efa013e845b339c19a50667ab80d8cd211a0b0136e4a378/fibsem-0.4.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,615 Found link https://files.pythonhosted.org/packages/09/b9/b86de8ca0eac74efc8b1e2377d831c85ab8d262ad6adf5bdb8bf88d709ea/fibsem-0.4.1a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a0 2026-07-15T07:37:05,616 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/b0/20/91878a10a278dbf43d56e655b3713730fd3a0a6335ced331bd4af4fc874e/fibsem-0.4.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,617 Found link https://files.pythonhosted.org/packages/e5/17/b068e52e2c71cdc8828a5f0f31a356c0b7e09cb265efc2ffa08b2ab70ec9/fibsem-0.4.1a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a1 2026-07-15T07:37:05,618 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/eb/f7/bc7aef2af42dbf3f5648ddd9c4c7930481ede0645e443a87d87e23dc3f08/fibsem-0.4.1a2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,619 Found link https://files.pythonhosted.org/packages/9e/83/be802fe2f6e6fb705ebac5145db3d3a939d1b5e1327cb5bb8ad45c5f4305/fibsem-0.4.1a2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a2 2026-07-15T07:37:05,620 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/15/82/c99977c3335d171af14c03d2f53a4a1bd048224ed87c01f80bc24340b105/fibsem-0.4.1a3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,621 Found link https://files.pythonhosted.org/packages/f9/e9/54e857b1e5bb2b435024c52d8abb0b427ef158d26586e52a86f434714e0c/fibsem-0.4.1a3.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a3 2026-07-15T07:37:05,622 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d0/9c/60e16a3d93af71b12812af969a172d1b9d369b960f60943f10ece0a2d167/fibsem-0.4.1a4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,623 Found link https://files.pythonhosted.org/packages/19/7c/6056a88900926891a94bffde93b3a015c9c4dc5dfa9befff3f3933894309/fibsem-0.4.1a4.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a4 2026-07-15T07:37:05,623 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/cd/02/ca02f2a1e3bac94c02272882d51d877790d68389669e5d1c60307b88f496/fibsem-0.5.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,624 Found link https://files.pythonhosted.org/packages/f6/6b/60043dfe9472157e09ffa3670331b8abeb3bd75dc02a8099505558e5e93f/fibsem-0.5.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.5.0a0 2026-07-15T07:37:05,625 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/22/f7/5f10026a07d6a57a0076edd43b8cb2aa6c99ca7627d73d4148a79b4ce0b7/fibsem-0.5.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,626 Found link https://files.pythonhosted.org/packages/66/de/006e53849fac7a6e5d6668db30c6cd33d4422d4a5249fbe74b30d1fe7c19/fibsem-0.5.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.5.0 2026-07-15T07:37:05,627 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/fa/c6/310c18b0c691b9bbc25f3541c5badfbd94b8d7f343b38e8fb93837e4e105/fibsem-0.5.1.dev0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,628 Found link https://files.pythonhosted.org/packages/4a/ca/7b5e0427b5a63c4eedfb29102f05009bd41485095a78e141fe276fe4b8a9/fibsem-0.5.1.dev0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.5.1.dev0 2026-07-15T07:37:05,629 Fetching project page and analyzing links: https://www.piwheels.org/simple/fibsem/ 2026-07-15T07:37:05,630 Getting page https://www.piwheels.org/simple/fibsem/ 2026-07-15T07:37:05,631 Found index url https://www.piwheels.org/simple 2026-07-15T07:37:05,820 Fetched page https://www.piwheels.org/simple/fibsem/ as text/html 2026-07-15T07:37:05,828 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.5.0-py3-none-any.whl#sha256=4e555655d3ee154f94f19f852f0bdecd95e5c7f8a3da05e15d41613387b4a956 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,828 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.5.0a0-py3-none-any.whl#sha256=8f78e1d1482c67775abcba3f0c698dc068a0fc178b3300a51b9b677427dc81b0 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,829 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a4-py3-none-any.whl#sha256=2f04e69d16c03c706c43703b5ce41458efa13fe47eaa337b74e0d806509d3612 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,830 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a3-py3-none-any.whl#sha256=620cc24270b7a249a18139807818849e86a947f852c570645bc9f2c3b71db009 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,831 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a2-py3-none-any.whl#sha256=5557b81b8968a7f877b11c83853ed170098f2ee12566d77d98858c338aafc987 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,831 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a1-py3-none-any.whl#sha256=434323dc920982d3a11a05f9a371b789c651c079f5b3f52b4e0f9767e023a66d (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,832 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a0-py3-none-any.whl#sha256=8cdf5947bf8ac28f8c66c56b535af7e4642d6ef9e668f3d3b7c2152ded7de2a9 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,832 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0-py3-none-any.whl#sha256=d51667917771fa9625169eb96dbaca2b235a8ab7dc5f1ad678102966817c27b7 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,833 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0a1-py3-none-any.whl#sha256=35162b65a87e942fdae287f95d40ff34365a9fc9e91bce94cc45ebc8282649f4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,833 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0a0-py3-none-any.whl#sha256=ca3bfce078100cd46e8df58808fc5047703e27d0a7caee586a6752762440536f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,834 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5-py3-none-any.whl#sha256=f8cb477984f69afce9e1c14235d4b8e40a1f277935b6f52ef50c0eca324cd39e (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,834 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5a1-py3-none-any.whl#sha256=77b52127685127a616d9707a30d4cb10f49b742d812f27d3e89e5c56bfdce097 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,835 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5a0-py3-none-any.whl#sha256=d78b21af3febbdf8bf524f0bc121a306f875d0db18bac01bcca54e4e9a1e51e2 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-15T07:37:05,836 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.4-py3-none-any.whl#sha256=935ab1545a500df6e9fec6103fc7f2bbcd2709303844c87d666bb1d16193beab (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,836 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.3-py3-none-any.whl#sha256=a7b254be73ea431bbe9eba8b7fd7b425ad830568cfbf5ec0b574b350178d2e76 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,837 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.2-py3-none-any.whl#sha256=8dad9ff09be4720143e8d4a3866d6b17ed08c732b68f47dd110d400bfe2be28e (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,838 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.2a1-py3-none-any.whl#sha256=f5309995df9eadda9e861edc7dd4d07452210426b10d4c4da4c2b405eb8e2ac4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,838 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.1-py3-none-any.whl#sha256=72ca906da40a31401ad7636438566ad77e6d6ef434c85d4517c7411645c41027 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,839 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0-py3-none-any.whl#sha256=61d366cbae13eecb465c904050eba503bb875f93c6e743eedcfae3ca9cf5e2ac (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,840 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0a1-py3-none-any.whl#sha256=21ae6ee6be3ad2f8832a6d457a20aea2627a25340a672d8a42f9f0488d8a710c (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,840 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0a0-py3-none-any.whl#sha256=4e29ec9054961edc9242d2cb332c01000bcb0574069ad23261e41ac7f1489a4f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-15T07:37:05,841 Skipping link: not a file: https://www.piwheels.org/simple/fibsem/ 2026-07-15T07:37:05,841 Skipping link: not a file: https://pypi.org/simple/fibsem/ 2026-07-15T07:37:05,865 Given no hashes to check 1 links for project 'fibsem': discarding no candidates 2026-07-15T07:37:05,885 Collecting fibsem==0.5.1.dev0 2026-07-15T07:37:05,887 Created temporary directory: /tmp/pip-unpack-0vghqh9m 2026-07-15T07:37:06,035 Downloading fibsem-0.5.1.dev0.tar.gz (10.7 MB) 2026-07-15T07:37:08,540 Added fibsem==0.5.1.dev0 from https://files.pythonhosted.org/packages/4a/ca/7b5e0427b5a63c4eedfb29102f05009bd41485095a78e141fe276fe4b8a9/fibsem-0.5.1.dev0.tar.gz to build tracker '/tmp/pip-build-tracker-0gancnum' 2026-07-15T07:37:08,548 Created temporary directory: /tmp/pip-build-env-qkhfw96s 2026-07-15T07:37:08,552 Installing build dependencies: started 2026-07-15T07:37:08,554 Running command pip subprocess to install build dependencies 2026-07-15T07:37:09,830 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-07-15T07:37:10,279 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-15T07:37:10,305 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-15T07:37:12,129 Collecting setuptools>=45 2026-07-15T07:37:12,130 Obtaining dependency information for setuptools>=45 from https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata 2026-07-15T07:37:12,144 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-07-15T07:37:12,381 Collecting wheel 2026-07-15T07:37:12,382 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-07-15T07:37:12,397 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-07-15T07:37:12,753 Collecting setuptools_scm[toml]>=6.2 2026-07-15T07:37:12,754 Obtaining dependency information for setuptools_scm[toml]>=6.2 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.0-py3-none-any.whl.metadata 2026-07-15T07:37:12,768 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.0-py3-none-any.whl.metadata (6.6 kB) 2026-07-15T07:37:12,779 Discarding https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.0-py3-none-any.whl#sha256=aea276de3de0e7db4e236bb9e5a53d6c9a6dddf092f72d3b6b14f6c8c0620c3c (from https://www.piwheels.org/simple/setuptools-scm/) (requires-python:>=3.8): Requested setuptools_scm>=6.2 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.0-py3-none-any.whl#sha256=aea276de3de0e7db4e236bb9e5a53d6c9a6dddf092f72d3b6b14f6c8c0620c3c has inconsistent Name: expected 'setuptools_scm', but metadata has 'setuptools-scm' 2026-07-15T07:37:12,804 Using cached setuptools_scm-10.2.0-py3-none-any.whl (27 kB) 2026-07-15T07:37:12,991 Collecting packaging>=24.0 2026-07-15T07:37:12,992 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-07-15T07:37:13,006 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-07-15T07:37:13,110 Collecting vcs-versioning<3,>=2.0.0.dev0 2026-07-15T07:37:13,111 Obtaining dependency information for vcs-versioning<3,>=2.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.2-py3-none-any.whl.metadata 2026-07-15T07:37:13,124 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.2-py3-none-any.whl.metadata (1.7 kB) 2026-07-15T07:37:13,366 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-07-15T07:37:13,386 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-15T07:37:13,412 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.2-py3-none-any.whl (108 kB) 2026-07-15T07:37:13,495 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-15T07:37:13,527 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-07-15T07:37:13,550 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-15T07:37:13,578 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.2-py3-none-any.whl (108 kB) 2026-07-15T07:37:13,670 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-15T07:37:16,488 Installing collected packages: setuptools, packaging, wheel, vcs-versioning, setuptools_scm 2026-07-15T07:37:19,991 Creating /tmp/pip-build-env-qkhfw96s/overlay/local/bin 2026-07-15T07:37:19,993 changing mode of /tmp/pip-build-env-qkhfw96s/overlay/local/bin/wheel to 755 2026-07-15T07:37:20,397 changing mode of /tmp/pip-build-env-qkhfw96s/overlay/local/bin/vcs-versioning to 755 2026-07-15T07:37:20,533 changing mode of /tmp/pip-build-env-qkhfw96s/overlay/local/bin/setuptools-scm to 755 2026-07-15T07:37:20,571 Successfully installed packaging-26.2 setuptools-83.0.0 setuptools_scm-10.2.0 vcs-versioning-2.2.2 wheel-0.47.0 2026-07-15T07:37:20,873 Installing build dependencies: finished with status 'done' 2026-07-15T07:37:20,881 Getting requirements to build wheel: started 2026-07-15T07:37:20,882 Running command Getting requirements to build wheel 2026-07-15T07:37:21,622 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-15T07:37:21,623 !! 2026-07-15T07:37:21,624 ******************************************************************************** 2026-07-15T07:37:21,624 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-15T07:37:21,625 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-15T07:37:21,626 or your builds will no longer be supported. 2026-07-15T07:37:21,627 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-15T07:37:21,628 ******************************************************************************** 2026-07-15T07:37:21,629 !! 2026-07-15T07:37:21,630 corresp(dist, value, root_dir) 2026-07-15T07:37:21,686 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-15T07:37:21,687 !! 2026-07-15T07:37:21,688 ******************************************************************************** 2026-07-15T07:37:21,688 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-15T07:37:21,689 License :: OSI Approved :: MIT License 2026-07-15T07:37:21,690 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-15T07:37:21,691 ******************************************************************************** 2026-07-15T07:37:21,692 !! 2026-07-15T07:37:21,692 dist._finalize_license_expression() 2026-07-15T07:37:21,694 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-15T07:37:21,695 !! 2026-07-15T07:37:21,696 ******************************************************************************** 2026-07-15T07:37:21,697 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-15T07:37:21,698 License :: OSI Approved :: MIT License 2026-07-15T07:37:21,699 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-15T07:37:21,699 ******************************************************************************** 2026-07-15T07:37:21,700 !! 2026-07-15T07:37:21,701 self._finalize_license_expression() 2026-07-15T07:37:21,701 running egg_info 2026-07-15T07:37:21,706 writing fibsem.egg-info/PKG-INFO 2026-07-15T07:37:21,716 writing dependency_links to fibsem.egg-info/dependency_links.txt 2026-07-15T07:37:21,718 writing entry points to fibsem.egg-info/entry_points.txt 2026-07-15T07:37:21,725 writing requirements to fibsem.egg-info/requires.txt 2026-07-15T07:37:21,727 writing top-level names to fibsem.egg-info/top_level.txt 2026-07-15T07:37:21,776 listing git files failed - pretending there aren't any 2026-07-15T07:37:21,785 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2026-07-15T07:37:21,885 reading manifest template 'MANIFEST.in' 2026-07-15T07:37:21,888 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-07-15T07:37:21,890 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-07-15T07:37:21,892 warning: no previously-included files matching '*.ui' found under directory '*' 2026-07-15T07:37:21,892 adding license file 'LICENSE' 2026-07-15T07:37:21,910 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2026-07-15T07:37:22,016 Getting requirements to build wheel: finished with status 'done' 2026-07-15T07:37:22,020 Created temporary directory: /tmp/pip-modern-metadata-9t7_f869 2026-07-15T07:37:22,022 Preparing metadata (pyproject.toml): started 2026-07-15T07:37:22,024 Running command Preparing metadata (pyproject.toml) 2026-07-15T07:37:22,694 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-15T07:37:22,694 !! 2026-07-15T07:37:22,696 ******************************************************************************** 2026-07-15T07:37:22,696 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-15T07:37:22,697 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-15T07:37:22,698 or your builds will no longer be supported. 2026-07-15T07:37:22,699 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-15T07:37:22,700 ******************************************************************************** 2026-07-15T07:37:22,701 !! 2026-07-15T07:37:22,701 corresp(dist, value, root_dir) 2026-07-15T07:37:22,756 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-15T07:37:22,757 !! 2026-07-15T07:37:22,758 ******************************************************************************** 2026-07-15T07:37:22,758 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-15T07:37:22,759 License :: OSI Approved :: MIT License 2026-07-15T07:37:22,760 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-15T07:37:22,761 ******************************************************************************** 2026-07-15T07:37:22,762 !! 2026-07-15T07:37:22,762 dist._finalize_license_expression() 2026-07-15T07:37:22,765 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-15T07:37:22,765 !! 2026-07-15T07:37:22,766 ******************************************************************************** 2026-07-15T07:37:22,767 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-15T07:37:22,768 License :: OSI Approved :: MIT License 2026-07-15T07:37:22,769 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-15T07:37:22,769 ******************************************************************************** 2026-07-15T07:37:22,771 !! 2026-07-15T07:37:22,771 self._finalize_license_expression() 2026-07-15T07:37:22,773 running dist_info 2026-07-15T07:37:22,775 creating /tmp/pip-modern-metadata-9t7_f869/fibsem.egg-info 2026-07-15T07:37:22,782 writing /tmp/pip-modern-metadata-9t7_f869/fibsem.egg-info/PKG-INFO 2026-07-15T07:37:22,792 writing dependency_links to /tmp/pip-modern-metadata-9t7_f869/fibsem.egg-info/dependency_links.txt 2026-07-15T07:37:22,794 writing entry points to /tmp/pip-modern-metadata-9t7_f869/fibsem.egg-info/entry_points.txt 2026-07-15T07:37:22,800 writing requirements to /tmp/pip-modern-metadata-9t7_f869/fibsem.egg-info/requires.txt 2026-07-15T07:37:22,802 writing top-level names to /tmp/pip-modern-metadata-9t7_f869/fibsem.egg-info/top_level.txt 2026-07-15T07:37:22,803 writing manifest file '/tmp/pip-modern-metadata-9t7_f869/fibsem.egg-info/SOURCES.txt' 2026-07-15T07:37:22,845 listing git files failed - pretending there aren't any 2026-07-15T07:37:22,853 reading manifest file '/tmp/pip-modern-metadata-9t7_f869/fibsem.egg-info/SOURCES.txt' 2026-07-15T07:37:22,855 reading manifest template 'MANIFEST.in' 2026-07-15T07:37:22,856 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-07-15T07:37:22,857 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-07-15T07:37:22,858 warning: no previously-included files matching '*.ui' found under directory '*' 2026-07-15T07:37:22,859 adding license file 'LICENSE' 2026-07-15T07:37:22,862 writing manifest file '/tmp/pip-modern-metadata-9t7_f869/fibsem.egg-info/SOURCES.txt' 2026-07-15T07:37:22,863 creating '/tmp/pip-modern-metadata-9t7_f869/fibsem-0.5.1.dev0.dist-info' 2026-07-15T07:37:22,999 Preparing metadata (pyproject.toml): finished with status 'done' 2026-07-15T07:37:23,005 Source in /tmp/pip-wheel-7lw03pp8/fibsem_077c087c6fd9413f806b42aa5155701d has version 0.5.1.dev0, which satisfies requirement fibsem==0.5.1.dev0 from https://files.pythonhosted.org/packages/4a/ca/7b5e0427b5a63c4eedfb29102f05009bd41485095a78e141fe276fe4b8a9/fibsem-0.5.1.dev0.tar.gz 2026-07-15T07:37:23,006 Removed fibsem==0.5.1.dev0 from https://files.pythonhosted.org/packages/4a/ca/7b5e0427b5a63c4eedfb29102f05009bd41485095a78e141fe276fe4b8a9/fibsem-0.5.1.dev0.tar.gz from build tracker '/tmp/pip-build-tracker-0gancnum' 2026-07-15T07:37:23,012 Created temporary directory: /tmp/pip-unpack-a4cuv92g 2026-07-15T07:37:23,013 Building wheels for collected packages: fibsem 2026-07-15T07:37:23,018 Created temporary directory: /tmp/pip-wheel-bn5xkehc 2026-07-15T07:37:23,018 Destination directory: /tmp/pip-wheel-bn5xkehc 2026-07-15T07:37:23,021 Building wheel for fibsem (pyproject.toml): started 2026-07-15T07:37:23,022 Running command Building wheel for fibsem (pyproject.toml) 2026-07-15T07:37:23,669 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-15T07:37:23,669 !! 2026-07-15T07:37:23,670 ******************************************************************************** 2026-07-15T07:37:23,671 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-15T07:37:23,672 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-15T07:37:23,672 or your builds will no longer be supported. 2026-07-15T07:37:23,673 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-15T07:37:23,674 ******************************************************************************** 2026-07-15T07:37:23,675 !! 2026-07-15T07:37:23,676 corresp(dist, value, root_dir) 2026-07-15T07:37:23,725 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-15T07:37:23,725 !! 2026-07-15T07:37:23,727 ******************************************************************************** 2026-07-15T07:37:23,727 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-15T07:37:23,728 License :: OSI Approved :: MIT License 2026-07-15T07:37:23,730 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-15T07:37:23,730 ******************************************************************************** 2026-07-15T07:37:23,732 !! 2026-07-15T07:37:23,732 dist._finalize_license_expression() 2026-07-15T07:37:23,733 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-15T07:37:23,734 !! 2026-07-15T07:37:23,735 ******************************************************************************** 2026-07-15T07:37:23,735 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-15T07:37:23,737 License :: OSI Approved :: MIT License 2026-07-15T07:37:23,738 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-15T07:37:23,738 ******************************************************************************** 2026-07-15T07:37:23,739 !! 2026-07-15T07:37:23,740 self._finalize_license_expression() 2026-07-15T07:37:23,741 running bdist_wheel 2026-07-15T07:37:23,761 running build 2026-07-15T07:37:23,761 running build_py 2026-07-15T07:37:23,763 creating build/lib/fibsem 2026-07-15T07:37:23,766 copying fibsem/__init__.py -> build/lib/fibsem 2026-07-15T07:37:23,768 copying fibsem/transformations.py -> build/lib/fibsem 2026-07-15T07:37:23,770 copying fibsem/microscope.py -> build/lib/fibsem 2026-07-15T07:37:23,775 copying fibsem/gis.py -> build/lib/fibsem 2026-07-15T07:37:23,777 copying fibsem/config.py -> build/lib/fibsem 2026-07-15T07:37:23,779 copying fibsem/structures.py -> build/lib/fibsem 2026-07-15T07:37:23,783 copying fibsem/constants.py -> build/lib/fibsem 2026-07-15T07:37:23,785 copying fibsem/cli.py -> build/lib/fibsem 2026-07-15T07:37:23,787 copying fibsem/validation.py -> build/lib/fibsem 2026-07-15T07:37:23,789 copying fibsem/movement.py -> build/lib/fibsem 2026-07-15T07:37:23,791 copying fibsem/conversions.py -> build/lib/fibsem 2026-07-15T07:37:23,793 copying fibsem/calibration.py -> build/lib/fibsem 2026-07-15T07:37:23,795 copying fibsem/utils.py -> build/lib/fibsem 2026-07-15T07:37:23,798 copying fibsem/configuration.py -> build/lib/fibsem 2026-07-15T07:37:23,800 copying fibsem/acquire.py -> build/lib/fibsem 2026-07-15T07:37:23,803 copying fibsem/logo.py -> build/lib/fibsem 2026-07-15T07:37:23,804 running egg_info 2026-07-15T07:37:23,812 writing fibsem.egg-info/PKG-INFO 2026-07-15T07:37:23,821 writing dependency_links to fibsem.egg-info/dependency_links.txt 2026-07-15T07:37:23,823 writing entry points to fibsem.egg-info/entry_points.txt 2026-07-15T07:37:23,829 writing requirements to fibsem.egg-info/requires.txt 2026-07-15T07:37:23,830 writing top-level names to fibsem.egg-info/top_level.txt 2026-07-15T07:37:23,866 listing git files failed - pretending there aren't any 2026-07-15T07:37:23,874 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2026-07-15T07:37:23,901 reading manifest template 'MANIFEST.in' 2026-07-15T07:37:23,904 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-07-15T07:37:23,906 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-07-15T07:37:23,908 warning: no previously-included files matching '*.ui' found under directory '*' 2026-07-15T07:37:23,909 adding license file 'LICENSE' 2026-07-15T07:37:23,926 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2026-07-15T07:37:23,930 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.alignment' is absent from the `packages` configuration. 2026-07-15T07:37:23,931 !! 2026-07-15T07:37:23,932 ******************************************************************************** 2026-07-15T07:37:23,933 ############################ 2026-07-15T07:37:23,933 # Package would be ignored # 2026-07-15T07:37:23,934 ############################ 2026-07-15T07:37:23,934 Python recognizes 'fibsem.alignment' as an importable package[^1], 2026-07-15T07:37:23,935 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:23,936 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:23,937 package, please make sure that 'fibsem.alignment' is explicitly added 2026-07-15T07:37:23,937 to the `packages` configuration field. 2026-07-15T07:37:23,938 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:23,939 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:23,940 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:23,941 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:23,942 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:23,943 If you don't want 'fibsem.alignment' to be distributed and are 2026-07-15T07:37:23,944 already explicitly excluding 'fibsem.alignment' via 2026-07-15T07:37:23,944 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:23,945 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:23,946 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:23,947 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:23,948 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:23,949 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:23,949 even if it does not contain any `.py` files. 2026-07-15T07:37:23,949 On the other hand, currently there is no concept of package data 2026-07-15T07:37:23,950 directory, all directories are treated like packages. 2026-07-15T07:37:23,950 ******************************************************************************** 2026-07-15T07:37:23,951 !! 2026-07-15T07:37:23,951 check.warn(importable) 2026-07-15T07:37:23,952 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications' is absent from the `packages` configuration. 2026-07-15T07:37:23,952 !! 2026-07-15T07:37:23,953 ******************************************************************************** 2026-07-15T07:37:23,953 ############################ 2026-07-15T07:37:23,954 # Package would be ignored # 2026-07-15T07:37:23,954 ############################ 2026-07-15T07:37:23,955 Python recognizes 'fibsem.applications' as an importable package[^1], 2026-07-15T07:37:23,955 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:23,956 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:23,956 package, please make sure that 'fibsem.applications' is explicitly added 2026-07-15T07:37:23,957 to the `packages` configuration field. 2026-07-15T07:37:23,958 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:23,959 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:23,959 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:23,960 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:23,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:23,962 If you don't want 'fibsem.applications' to be distributed and are 2026-07-15T07:37:23,963 already explicitly excluding 'fibsem.applications' via 2026-07-15T07:37:23,964 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:23,964 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:23,965 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:23,965 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:23,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:23,968 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:23,968 even if it does not contain any `.py` files. 2026-07-15T07:37:23,969 On the other hand, currently there is no concept of package data 2026-07-15T07:37:23,969 directory, all directories are treated like packages. 2026-07-15T07:37:23,970 ******************************************************************************** 2026-07-15T07:37:23,970 !! 2026-07-15T07:37:23,971 check.warn(importable) 2026-07-15T07:37:23,971 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella' is absent from the `packages` configuration. 2026-07-15T07:37:23,972 !! 2026-07-15T07:37:23,973 ******************************************************************************** 2026-07-15T07:37:23,973 ############################ 2026-07-15T07:37:23,974 # Package would be ignored # 2026-07-15T07:37:23,974 ############################ 2026-07-15T07:37:23,975 Python recognizes 'fibsem.applications.autolamella' as an importable package[^1], 2026-07-15T07:37:23,975 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:23,976 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:23,976 package, please make sure that 'fibsem.applications.autolamella' is explicitly added 2026-07-15T07:37:23,976 to the `packages` configuration field. 2026-07-15T07:37:23,977 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:23,977 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:23,978 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:23,979 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:23,979 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:23,980 If you don't want 'fibsem.applications.autolamella' to be distributed and are 2026-07-15T07:37:23,981 already explicitly excluding 'fibsem.applications.autolamella' via 2026-07-15T07:37:23,981 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:23,981 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:23,982 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:23,983 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:23,984 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:23,985 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:23,986 even if it does not contain any `.py` files. 2026-07-15T07:37:23,986 On the other hand, currently there is no concept of package data 2026-07-15T07:37:23,987 directory, all directories are treated like packages. 2026-07-15T07:37:23,987 ******************************************************************************** 2026-07-15T07:37:23,988 !! 2026-07-15T07:37:23,989 check.warn(importable) 2026-07-15T07:37:23,989 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.compat' is absent from the `packages` configuration. 2026-07-15T07:37:23,990 !! 2026-07-15T07:37:23,991 ******************************************************************************** 2026-07-15T07:37:23,991 ############################ 2026-07-15T07:37:23,992 # Package would be ignored # 2026-07-15T07:37:23,992 ############################ 2026-07-15T07:37:23,993 Python recognizes 'fibsem.applications.autolamella.compat' as an importable package[^1], 2026-07-15T07:37:23,993 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:23,994 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:23,995 package, please make sure that 'fibsem.applications.autolamella.compat' is explicitly added 2026-07-15T07:37:23,995 to the `packages` configuration field. 2026-07-15T07:37:23,996 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:23,997 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:23,997 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:23,998 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:23,999 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,000 If you don't want 'fibsem.applications.autolamella.compat' to be distributed and are 2026-07-15T07:37:24,001 already explicitly excluding 'fibsem.applications.autolamella.compat' via 2026-07-15T07:37:24,001 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,002 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,002 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,003 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,003 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,004 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,005 even if it does not contain any `.py` files. 2026-07-15T07:37:24,005 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,005 directory, all directories are treated like packages. 2026-07-15T07:37:24,006 ******************************************************************************** 2026-07-15T07:37:24,007 !! 2026-07-15T07:37:24,007 check.warn(importable) 2026-07-15T07:37:24,007 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.protocol' is absent from the `packages` configuration. 2026-07-15T07:37:24,008 !! 2026-07-15T07:37:24,009 ******************************************************************************** 2026-07-15T07:37:24,009 ############################ 2026-07-15T07:37:24,010 # Package would be ignored # 2026-07-15T07:37:24,010 ############################ 2026-07-15T07:37:24,010 Python recognizes 'fibsem.applications.autolamella.protocol' as an importable package[^1], 2026-07-15T07:37:24,011 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,012 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,012 package, please make sure that 'fibsem.applications.autolamella.protocol' is explicitly added 2026-07-15T07:37:24,013 to the `packages` configuration field. 2026-07-15T07:37:24,014 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,014 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,015 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,016 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,017 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,018 If you don't want 'fibsem.applications.autolamella.protocol' to be distributed and are 2026-07-15T07:37:24,018 already explicitly excluding 'fibsem.applications.autolamella.protocol' via 2026-07-15T07:37:24,019 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,019 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,020 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,021 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,022 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,023 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,024 even if it does not contain any `.py` files. 2026-07-15T07:37:24,025 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,025 directory, all directories are treated like packages. 2026-07-15T07:37:24,026 ******************************************************************************** 2026-07-15T07:37:24,027 !! 2026-07-15T07:37:24,027 check.warn(importable) 2026-07-15T07:37:24,028 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.protocol.development' is absent from the `packages` configuration. 2026-07-15T07:37:24,028 !! 2026-07-15T07:37:24,029 ******************************************************************************** 2026-07-15T07:37:24,029 ############################ 2026-07-15T07:37:24,030 # Package would be ignored # 2026-07-15T07:37:24,030 ############################ 2026-07-15T07:37:24,030 Python recognizes 'fibsem.applications.autolamella.protocol.development' as an importable package[^1], 2026-07-15T07:37:24,031 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,032 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,032 package, please make sure that 'fibsem.applications.autolamella.protocol.development' is explicitly added 2026-07-15T07:37:24,032 to the `packages` configuration field. 2026-07-15T07:37:24,033 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,033 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,034 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,035 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,036 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,037 If you don't want 'fibsem.applications.autolamella.protocol.development' to be distributed and are 2026-07-15T07:37:24,037 already explicitly excluding 'fibsem.applications.autolamella.protocol.development' via 2026-07-15T07:37:24,038 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,038 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,039 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,040 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,041 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,043 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,043 even if it does not contain any `.py` files. 2026-07-15T07:37:24,044 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,044 directory, all directories are treated like packages. 2026-07-15T07:37:24,045 ******************************************************************************** 2026-07-15T07:37:24,046 !! 2026-07-15T07:37:24,046 check.warn(importable) 2026-07-15T07:37:24,047 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.protocol.legacy' is absent from the `packages` configuration. 2026-07-15T07:37:24,047 !! 2026-07-15T07:37:24,048 ******************************************************************************** 2026-07-15T07:37:24,049 ############################ 2026-07-15T07:37:24,049 # Package would be ignored # 2026-07-15T07:37:24,050 ############################ 2026-07-15T07:37:24,050 Python recognizes 'fibsem.applications.autolamella.protocol.legacy' as an importable package[^1], 2026-07-15T07:37:24,051 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,052 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,053 package, please make sure that 'fibsem.applications.autolamella.protocol.legacy' is explicitly added 2026-07-15T07:37:24,053 to the `packages` configuration field. 2026-07-15T07:37:24,054 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,054 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,054 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,055 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,056 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,057 If you don't want 'fibsem.applications.autolamella.protocol.legacy' to be distributed and are 2026-07-15T07:37:24,057 already explicitly excluding 'fibsem.applications.autolamella.protocol.legacy' via 2026-07-15T07:37:24,057 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,058 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,058 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,059 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,061 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,061 even if it does not contain any `.py` files. 2026-07-15T07:37:24,062 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,062 directory, all directories are treated like packages. 2026-07-15T07:37:24,063 ******************************************************************************** 2026-07-15T07:37:24,064 !! 2026-07-15T07:37:24,064 check.warn(importable) 2026-07-15T07:37:24,065 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.tools' is absent from the `packages` configuration. 2026-07-15T07:37:24,065 !! 2026-07-15T07:37:24,066 ******************************************************************************** 2026-07-15T07:37:24,067 ############################ 2026-07-15T07:37:24,067 # Package would be ignored # 2026-07-15T07:37:24,068 ############################ 2026-07-15T07:37:24,068 Python recognizes 'fibsem.applications.autolamella.tools' as an importable package[^1], 2026-07-15T07:37:24,069 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,070 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,070 package, please make sure that 'fibsem.applications.autolamella.tools' is explicitly added 2026-07-15T07:37:24,070 to the `packages` configuration field. 2026-07-15T07:37:24,071 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,072 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,072 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,073 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,074 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,075 If you don't want 'fibsem.applications.autolamella.tools' to be distributed and are 2026-07-15T07:37:24,076 already explicitly excluding 'fibsem.applications.autolamella.tools' via 2026-07-15T07:37:24,076 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,077 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,077 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,078 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,079 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,080 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,081 even if it does not contain any `.py` files. 2026-07-15T07:37:24,081 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,081 directory, all directories are treated like packages. 2026-07-15T07:37:24,082 ******************************************************************************** 2026-07-15T07:37:24,083 !! 2026-07-15T07:37:24,083 check.warn(importable) 2026-07-15T07:37:24,083 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.ui' is absent from the `packages` configuration. 2026-07-15T07:37:24,084 !! 2026-07-15T07:37:24,085 ******************************************************************************** 2026-07-15T07:37:24,085 ############################ 2026-07-15T07:37:24,085 # Package would be ignored # 2026-07-15T07:37:24,086 ############################ 2026-07-15T07:37:24,086 Python recognizes 'fibsem.applications.autolamella.ui' as an importable package[^1], 2026-07-15T07:37:24,087 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,088 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,088 package, please make sure that 'fibsem.applications.autolamella.ui' is explicitly added 2026-07-15T07:37:24,089 to the `packages` configuration field. 2026-07-15T07:37:24,090 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,090 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,091 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,092 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,093 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,094 If you don't want 'fibsem.applications.autolamella.ui' to be distributed and are 2026-07-15T07:37:24,095 already explicitly excluding 'fibsem.applications.autolamella.ui' via 2026-07-15T07:37:24,095 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,096 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,096 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,097 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,098 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,100 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,100 even if it does not contain any `.py` files. 2026-07-15T07:37:24,101 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,101 directory, all directories are treated like packages. 2026-07-15T07:37:24,102 ******************************************************************************** 2026-07-15T07:37:24,103 !! 2026-07-15T07:37:24,104 check.warn(importable) 2026-07-15T07:37:24,104 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.ui.tests' is absent from the `packages` configuration. 2026-07-15T07:37:24,105 !! 2026-07-15T07:37:24,106 ******************************************************************************** 2026-07-15T07:37:24,106 ############################ 2026-07-15T07:37:24,107 # Package would be ignored # 2026-07-15T07:37:24,107 ############################ 2026-07-15T07:37:24,107 Python recognizes 'fibsem.applications.autolamella.ui.tests' as an importable package[^1], 2026-07-15T07:37:24,108 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,109 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,109 package, please make sure that 'fibsem.applications.autolamella.ui.tests' is explicitly added 2026-07-15T07:37:24,109 to the `packages` configuration field. 2026-07-15T07:37:24,110 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,111 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,111 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,112 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,113 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,113 If you don't want 'fibsem.applications.autolamella.ui.tests' to be distributed and are 2026-07-15T07:37:24,114 already explicitly excluding 'fibsem.applications.autolamella.ui.tests' via 2026-07-15T07:37:24,114 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,115 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,115 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,116 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,117 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,119 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,119 even if it does not contain any `.py` files. 2026-07-15T07:37:24,120 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,120 directory, all directories are treated like packages. 2026-07-15T07:37:24,121 ******************************************************************************** 2026-07-15T07:37:24,122 !! 2026-07-15T07:37:24,122 check.warn(importable) 2026-07-15T07:37:24,123 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows' is absent from the `packages` configuration. 2026-07-15T07:37:24,123 !! 2026-07-15T07:37:24,124 ******************************************************************************** 2026-07-15T07:37:24,125 ############################ 2026-07-15T07:37:24,125 # Package would be ignored # 2026-07-15T07:37:24,126 ############################ 2026-07-15T07:37:24,126 Python recognizes 'fibsem.applications.autolamella.workflows' as an importable package[^1], 2026-07-15T07:37:24,127 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,128 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,128 package, please make sure that 'fibsem.applications.autolamella.workflows' is explicitly added 2026-07-15T07:37:24,129 to the `packages` configuration field. 2026-07-15T07:37:24,130 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,130 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,131 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,132 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,133 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,133 If you don't want 'fibsem.applications.autolamella.workflows' to be distributed and are 2026-07-15T07:37:24,134 already explicitly excluding 'fibsem.applications.autolamella.workflows' via 2026-07-15T07:37:24,134 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,134 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,135 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,136 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,136 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,138 even if it does not contain any `.py` files. 2026-07-15T07:37:24,138 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,139 directory, all directories are treated like packages. 2026-07-15T07:37:24,139 ******************************************************************************** 2026-07-15T07:37:24,140 !! 2026-07-15T07:37:24,141 check.warn(importable) 2026-07-15T07:37:24,141 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows.legacy' is absent from the `packages` configuration. 2026-07-15T07:37:24,142 !! 2026-07-15T07:37:24,143 ******************************************************************************** 2026-07-15T07:37:24,143 ############################ 2026-07-15T07:37:24,144 # Package would be ignored # 2026-07-15T07:37:24,144 ############################ 2026-07-15T07:37:24,145 Python recognizes 'fibsem.applications.autolamella.workflows.legacy' as an importable package[^1], 2026-07-15T07:37:24,145 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,146 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,147 package, please make sure that 'fibsem.applications.autolamella.workflows.legacy' is explicitly added 2026-07-15T07:37:24,147 to the `packages` configuration field. 2026-07-15T07:37:24,148 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,149 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,149 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,150 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,151 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,152 If you don't want 'fibsem.applications.autolamella.workflows.legacy' to be distributed and are 2026-07-15T07:37:24,153 already explicitly excluding 'fibsem.applications.autolamella.workflows.legacy' via 2026-07-15T07:37:24,153 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,154 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,154 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,155 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,156 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,157 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,158 even if it does not contain any `.py` files. 2026-07-15T07:37:24,158 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,159 directory, all directories are treated like packages. 2026-07-15T07:37:24,159 ******************************************************************************** 2026-07-15T07:37:24,160 !! 2026-07-15T07:37:24,160 check.warn(importable) 2026-07-15T07:37:24,160 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows.tasks' is absent from the `packages` configuration. 2026-07-15T07:37:24,161 !! 2026-07-15T07:37:24,162 ******************************************************************************** 2026-07-15T07:37:24,162 ############################ 2026-07-15T07:37:24,162 # Package would be ignored # 2026-07-15T07:37:24,163 ############################ 2026-07-15T07:37:24,163 Python recognizes 'fibsem.applications.autolamella.workflows.tasks' as an importable package[^1], 2026-07-15T07:37:24,164 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,165 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,165 package, please make sure that 'fibsem.applications.autolamella.workflows.tasks' is explicitly added 2026-07-15T07:37:24,166 to the `packages` configuration field. 2026-07-15T07:37:24,167 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,167 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,168 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,169 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,170 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,171 If you don't want 'fibsem.applications.autolamella.workflows.tasks' to be distributed and are 2026-07-15T07:37:24,171 already explicitly excluding 'fibsem.applications.autolamella.workflows.tasks' via 2026-07-15T07:37:24,172 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,173 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,173 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,174 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,175 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,177 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,177 even if it does not contain any `.py` files. 2026-07-15T07:37:24,177 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,178 directory, all directories are treated like packages. 2026-07-15T07:37:24,178 ******************************************************************************** 2026-07-15T07:37:24,179 !! 2026-07-15T07:37:24,180 check.warn(importable) 2026-07-15T07:37:24,180 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.autofunctions' is absent from the `packages` configuration. 2026-07-15T07:37:24,181 !! 2026-07-15T07:37:24,182 ******************************************************************************** 2026-07-15T07:37:24,183 ############################ 2026-07-15T07:37:24,183 # Package would be ignored # 2026-07-15T07:37:24,184 ############################ 2026-07-15T07:37:24,184 Python recognizes 'fibsem.autofunctions' as an importable package[^1], 2026-07-15T07:37:24,185 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,185 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,186 package, please make sure that 'fibsem.autofunctions' is explicitly added 2026-07-15T07:37:24,186 to the `packages` configuration field. 2026-07-15T07:37:24,187 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,187 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,188 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,189 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,189 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,190 If you don't want 'fibsem.autofunctions' to be distributed and are 2026-07-15T07:37:24,190 already explicitly excluding 'fibsem.autofunctions' via 2026-07-15T07:37:24,191 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,191 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,192 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,192 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,193 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,195 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,195 even if it does not contain any `.py` files. 2026-07-15T07:37:24,196 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,196 directory, all directories are treated like packages. 2026-07-15T07:37:24,197 ******************************************************************************** 2026-07-15T07:37:24,198 !! 2026-07-15T07:37:24,198 check.warn(importable) 2026-07-15T07:37:24,199 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.chat' is absent from the `packages` configuration. 2026-07-15T07:37:24,199 !! 2026-07-15T07:37:24,200 ******************************************************************************** 2026-07-15T07:37:24,201 ############################ 2026-07-15T07:37:24,202 # Package would be ignored # 2026-07-15T07:37:24,202 ############################ 2026-07-15T07:37:24,203 Python recognizes 'fibsem.chat' as an importable package[^1], 2026-07-15T07:37:24,203 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,204 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,205 package, please make sure that 'fibsem.chat' is explicitly added 2026-07-15T07:37:24,205 to the `packages` configuration field. 2026-07-15T07:37:24,206 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,207 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,207 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,208 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,209 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,210 If you don't want 'fibsem.chat' to be distributed and are 2026-07-15T07:37:24,211 already explicitly excluding 'fibsem.chat' via 2026-07-15T07:37:24,212 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,212 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,212 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,213 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,215 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,215 even if it does not contain any `.py` files. 2026-07-15T07:37:24,216 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,216 directory, all directories are treated like packages. 2026-07-15T07:37:24,217 ******************************************************************************** 2026-07-15T07:37:24,217 !! 2026-07-15T07:37:24,218 check.warn(importable) 2026-07-15T07:37:24,218 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.config' is absent from the `packages` configuration. 2026-07-15T07:37:24,219 !! 2026-07-15T07:37:24,220 ******************************************************************************** 2026-07-15T07:37:24,220 ############################ 2026-07-15T07:37:24,220 # Package would be ignored # 2026-07-15T07:37:24,221 ############################ 2026-07-15T07:37:24,221 Python recognizes 'fibsem.config' as an importable package[^1], 2026-07-15T07:37:24,222 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,223 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,223 package, please make sure that 'fibsem.config' is explicitly added 2026-07-15T07:37:24,224 to the `packages` configuration field. 2026-07-15T07:37:24,224 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,225 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,226 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,227 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,227 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,228 If you don't want 'fibsem.config' to be distributed and are 2026-07-15T07:37:24,229 already explicitly excluding 'fibsem.config' via 2026-07-15T07:37:24,230 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,230 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,231 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,232 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,233 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,234 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,234 even if it does not contain any `.py` files. 2026-07-15T07:37:24,235 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,236 directory, all directories are treated like packages. 2026-07-15T07:37:24,236 ******************************************************************************** 2026-07-15T07:37:24,237 !! 2026-07-15T07:37:24,238 check.warn(importable) 2026-07-15T07:37:24,238 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.config.fm' is absent from the `packages` configuration. 2026-07-15T07:37:24,239 !! 2026-07-15T07:37:24,240 ******************************************************************************** 2026-07-15T07:37:24,240 ############################ 2026-07-15T07:37:24,240 # Package would be ignored # 2026-07-15T07:37:24,241 ############################ 2026-07-15T07:37:24,241 Python recognizes 'fibsem.config.fm' as an importable package[^1], 2026-07-15T07:37:24,242 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,243 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,243 package, please make sure that 'fibsem.config.fm' is explicitly added 2026-07-15T07:37:24,244 to the `packages` configuration field. 2026-07-15T07:37:24,245 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,245 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,245 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,246 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,247 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,248 If you don't want 'fibsem.config.fm' to be distributed and are 2026-07-15T07:37:24,248 already explicitly excluding 'fibsem.config.fm' via 2026-07-15T07:37:24,249 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,249 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,250 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,250 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,252 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,253 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,254 even if it does not contain any `.py` files. 2026-07-15T07:37:24,254 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,255 directory, all directories are treated like packages. 2026-07-15T07:37:24,255 ******************************************************************************** 2026-07-15T07:37:24,256 !! 2026-07-15T07:37:24,256 check.warn(importable) 2026-07-15T07:37:24,257 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation' is absent from the `packages` configuration. 2026-07-15T07:37:24,258 !! 2026-07-15T07:37:24,258 ******************************************************************************** 2026-07-15T07:37:24,259 ############################ 2026-07-15T07:37:24,259 # Package would be ignored # 2026-07-15T07:37:24,260 ############################ 2026-07-15T07:37:24,260 Python recognizes 'fibsem.correlation' as an importable package[^1], 2026-07-15T07:37:24,261 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,261 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,262 package, please make sure that 'fibsem.correlation' is explicitly added 2026-07-15T07:37:24,262 to the `packages` configuration field. 2026-07-15T07:37:24,264 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,264 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,265 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,266 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,266 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,267 If you don't want 'fibsem.correlation' to be distributed and are 2026-07-15T07:37:24,268 already explicitly excluding 'fibsem.correlation' via 2026-07-15T07:37:24,268 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,268 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,269 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,269 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,270 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,271 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,272 even if it does not contain any `.py` files. 2026-07-15T07:37:24,272 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,272 directory, all directories are treated like packages. 2026-07-15T07:37:24,273 ******************************************************************************** 2026-07-15T07:37:24,273 !! 2026-07-15T07:37:24,274 check.warn(importable) 2026-07-15T07:37:24,274 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.pyto' is absent from the `packages` configuration. 2026-07-15T07:37:24,275 !! 2026-07-15T07:37:24,276 ******************************************************************************** 2026-07-15T07:37:24,276 ############################ 2026-07-15T07:37:24,277 # Package would be ignored # 2026-07-15T07:37:24,277 ############################ 2026-07-15T07:37:24,277 Python recognizes 'fibsem.correlation.pyto' as an importable package[^1], 2026-07-15T07:37:24,278 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,279 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,279 package, please make sure that 'fibsem.correlation.pyto' is explicitly added 2026-07-15T07:37:24,280 to the `packages` configuration field. 2026-07-15T07:37:24,281 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,281 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,282 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,283 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,283 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,284 If you don't want 'fibsem.correlation.pyto' to be distributed and are 2026-07-15T07:37:24,285 already explicitly excluding 'fibsem.correlation.pyto' via 2026-07-15T07:37:24,285 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,286 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,286 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,287 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,288 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,289 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,290 even if it does not contain any `.py` files. 2026-07-15T07:37:24,290 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,291 directory, all directories are treated like packages. 2026-07-15T07:37:24,292 ******************************************************************************** 2026-07-15T07:37:24,292 !! 2026-07-15T07:37:24,293 check.warn(importable) 2026-07-15T07:37:24,293 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.pyto.test' is absent from the `packages` configuration. 2026-07-15T07:37:24,293 !! 2026-07-15T07:37:24,294 ******************************************************************************** 2026-07-15T07:37:24,295 ############################ 2026-07-15T07:37:24,295 # Package would be ignored # 2026-07-15T07:37:24,295 ############################ 2026-07-15T07:37:24,296 Python recognizes 'fibsem.correlation.pyto.test' as an importable package[^1], 2026-07-15T07:37:24,296 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,297 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,297 package, please make sure that 'fibsem.correlation.pyto.test' is explicitly added 2026-07-15T07:37:24,297 to the `packages` configuration field. 2026-07-15T07:37:24,298 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,299 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,299 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,300 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,301 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,302 If you don't want 'fibsem.correlation.pyto.test' to be distributed and are 2026-07-15T07:37:24,303 already explicitly excluding 'fibsem.correlation.pyto.test' via 2026-07-15T07:37:24,303 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,304 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,304 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,305 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,306 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,308 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,308 even if it does not contain any `.py` files. 2026-07-15T07:37:24,309 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,309 directory, all directories are treated like packages. 2026-07-15T07:37:24,310 ******************************************************************************** 2026-07-15T07:37:24,311 !! 2026-07-15T07:37:24,312 check.warn(importable) 2026-07-15T07:37:24,312 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.tests' is absent from the `packages` configuration. 2026-07-15T07:37:24,313 !! 2026-07-15T07:37:24,314 ******************************************************************************** 2026-07-15T07:37:24,314 ############################ 2026-07-15T07:37:24,315 # Package would be ignored # 2026-07-15T07:37:24,315 ############################ 2026-07-15T07:37:24,316 Python recognizes 'fibsem.correlation.tests' as an importable package[^1], 2026-07-15T07:37:24,316 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,318 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,318 package, please make sure that 'fibsem.correlation.tests' is explicitly added 2026-07-15T07:37:24,319 to the `packages` configuration field. 2026-07-15T07:37:24,320 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,320 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,320 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,321 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,322 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,322 If you don't want 'fibsem.correlation.tests' to be distributed and are 2026-07-15T07:37:24,323 already explicitly excluding 'fibsem.correlation.tests' via 2026-07-15T07:37:24,323 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,323 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,324 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,324 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,325 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,326 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,326 even if it does not contain any `.py` files. 2026-07-15T07:37:24,327 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,327 directory, all directories are treated like packages. 2026-07-15T07:37:24,328 ******************************************************************************** 2026-07-15T07:37:24,329 !! 2026-07-15T07:37:24,329 check.warn(importable) 2026-07-15T07:37:24,330 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.ui' is absent from the `packages` configuration. 2026-07-15T07:37:24,330 !! 2026-07-15T07:37:24,332 ******************************************************************************** 2026-07-15T07:37:24,332 ############################ 2026-07-15T07:37:24,333 # Package would be ignored # 2026-07-15T07:37:24,333 ############################ 2026-07-15T07:37:24,334 Python recognizes 'fibsem.correlation.ui' as an importable package[^1], 2026-07-15T07:37:24,334 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,335 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,336 package, please make sure that 'fibsem.correlation.ui' is explicitly added 2026-07-15T07:37:24,336 to the `packages` configuration field. 2026-07-15T07:37:24,337 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,338 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,338 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,339 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,340 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,341 If you don't want 'fibsem.correlation.ui' to be distributed and are 2026-07-15T07:37:24,341 already explicitly excluding 'fibsem.correlation.ui' via 2026-07-15T07:37:24,342 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,342 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,343 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,344 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,345 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,346 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,346 even if it does not contain any `.py` files. 2026-07-15T07:37:24,347 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,347 directory, all directories are treated like packages. 2026-07-15T07:37:24,347 ******************************************************************************** 2026-07-15T07:37:24,348 !! 2026-07-15T07:37:24,348 check.warn(importable) 2026-07-15T07:37:24,349 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.ui.widgets' is absent from the `packages` configuration. 2026-07-15T07:37:24,349 !! 2026-07-15T07:37:24,350 ******************************************************************************** 2026-07-15T07:37:24,350 ############################ 2026-07-15T07:37:24,351 # Package would be ignored # 2026-07-15T07:37:24,351 ############################ 2026-07-15T07:37:24,352 Python recognizes 'fibsem.correlation.ui.widgets' as an importable package[^1], 2026-07-15T07:37:24,352 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,353 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,353 package, please make sure that 'fibsem.correlation.ui.widgets' is explicitly added 2026-07-15T07:37:24,354 to the `packages` configuration field. 2026-07-15T07:37:24,355 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,355 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,356 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,357 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,358 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,359 If you don't want 'fibsem.correlation.ui.widgets' to be distributed and are 2026-07-15T07:37:24,360 already explicitly excluding 'fibsem.correlation.ui.widgets' via 2026-07-15T07:37:24,360 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,361 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,362 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,363 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,364 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,365 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,366 even if it does not contain any `.py` files. 2026-07-15T07:37:24,366 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,367 directory, all directories are treated like packages. 2026-07-15T07:37:24,367 ******************************************************************************** 2026-07-15T07:37:24,368 !! 2026-07-15T07:37:24,369 check.warn(importable) 2026-07-15T07:37:24,369 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection' is absent from the `packages` configuration. 2026-07-15T07:37:24,370 !! 2026-07-15T07:37:24,371 ******************************************************************************** 2026-07-15T07:37:24,372 ############################ 2026-07-15T07:37:24,372 # Package would be ignored # 2026-07-15T07:37:24,373 ############################ 2026-07-15T07:37:24,373 Python recognizes 'fibsem.detection' as an importable package[^1], 2026-07-15T07:37:24,374 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,375 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,375 package, please make sure that 'fibsem.detection' is explicitly added 2026-07-15T07:37:24,375 to the `packages` configuration field. 2026-07-15T07:37:24,376 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,377 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,377 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,378 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,379 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,379 If you don't want 'fibsem.detection' to be distributed and are 2026-07-15T07:37:24,380 already explicitly excluding 'fibsem.detection' via 2026-07-15T07:37:24,380 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,380 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,381 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,382 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,383 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,384 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,385 even if it does not contain any `.py` files. 2026-07-15T07:37:24,385 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,386 directory, all directories are treated like packages. 2026-07-15T07:37:24,386 ******************************************************************************** 2026-07-15T07:37:24,388 !! 2026-07-15T07:37:24,388 check.warn(importable) 2026-07-15T07:37:24,389 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection.test_images' is absent from the `packages` configuration. 2026-07-15T07:37:24,389 !! 2026-07-15T07:37:24,391 ******************************************************************************** 2026-07-15T07:37:24,392 ############################ 2026-07-15T07:37:24,392 # Package would be ignored # 2026-07-15T07:37:24,393 ############################ 2026-07-15T07:37:24,393 Python recognizes 'fibsem.detection.test_images' as an importable package[^1], 2026-07-15T07:37:24,394 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,395 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,395 package, please make sure that 'fibsem.detection.test_images' is explicitly added 2026-07-15T07:37:24,396 to the `packages` configuration field. 2026-07-15T07:37:24,397 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,397 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,398 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,399 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,400 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,401 If you don't want 'fibsem.detection.test_images' to be distributed and are 2026-07-15T07:37:24,402 already explicitly excluding 'fibsem.detection.test_images' via 2026-07-15T07:37:24,403 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,403 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,404 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,404 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,405 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,406 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,407 even if it does not contain any `.py` files. 2026-07-15T07:37:24,407 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,407 directory, all directories are treated like packages. 2026-07-15T07:37:24,408 ******************************************************************************** 2026-07-15T07:37:24,409 !! 2026-07-15T07:37:24,409 check.warn(importable) 2026-07-15T07:37:24,409 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection.test_images.serial' is absent from the `packages` configuration. 2026-07-15T07:37:24,410 !! 2026-07-15T07:37:24,410 ******************************************************************************** 2026-07-15T07:37:24,411 ############################ 2026-07-15T07:37:24,411 # Package would be ignored # 2026-07-15T07:37:24,412 ############################ 2026-07-15T07:37:24,412 Python recognizes 'fibsem.detection.test_images.serial' as an importable package[^1], 2026-07-15T07:37:24,413 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,414 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,415 package, please make sure that 'fibsem.detection.test_images.serial' is explicitly added 2026-07-15T07:37:24,415 to the `packages` configuration field. 2026-07-15T07:37:24,416 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,417 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,417 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,418 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,419 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,420 If you don't want 'fibsem.detection.test_images.serial' to be distributed and are 2026-07-15T07:37:24,421 already explicitly excluding 'fibsem.detection.test_images.serial' via 2026-07-15T07:37:24,421 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,422 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,422 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,423 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,424 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,426 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,426 even if it does not contain any `.py` files. 2026-07-15T07:37:24,427 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,427 directory, all directories are treated like packages. 2026-07-15T07:37:24,428 ******************************************************************************** 2026-07-15T07:37:24,429 !! 2026-07-15T07:37:24,429 check.warn(importable) 2026-07-15T07:37:24,430 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.fm' is absent from the `packages` configuration. 2026-07-15T07:37:24,430 !! 2026-07-15T07:37:24,431 ******************************************************************************** 2026-07-15T07:37:24,431 ############################ 2026-07-15T07:37:24,432 # Package would be ignored # 2026-07-15T07:37:24,432 ############################ 2026-07-15T07:37:24,432 Python recognizes 'fibsem.fm' as an importable package[^1], 2026-07-15T07:37:24,433 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,434 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,434 package, please make sure that 'fibsem.fm' is explicitly added 2026-07-15T07:37:24,434 to the `packages` configuration field. 2026-07-15T07:37:24,435 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,436 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,436 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,437 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,438 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,439 If you don't want 'fibsem.fm' to be distributed and are 2026-07-15T07:37:24,439 already explicitly excluding 'fibsem.fm' via 2026-07-15T07:37:24,439 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,440 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,440 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,442 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,442 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,444 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,445 even if it does not contain any `.py` files. 2026-07-15T07:37:24,445 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,446 directory, all directories are treated like packages. 2026-07-15T07:37:24,446 ******************************************************************************** 2026-07-15T07:37:24,447 !! 2026-07-15T07:37:24,448 check.warn(importable) 2026-07-15T07:37:24,448 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.fm.calibration' is absent from the `packages` configuration. 2026-07-15T07:37:24,449 !! 2026-07-15T07:37:24,450 ******************************************************************************** 2026-07-15T07:37:24,450 ############################ 2026-07-15T07:37:24,451 # Package would be ignored # 2026-07-15T07:37:24,451 ############################ 2026-07-15T07:37:24,452 Python recognizes 'fibsem.fm.calibration' as an importable package[^1], 2026-07-15T07:37:24,452 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,453 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,454 package, please make sure that 'fibsem.fm.calibration' is explicitly added 2026-07-15T07:37:24,454 to the `packages` configuration field. 2026-07-15T07:37:24,455 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,456 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,457 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,457 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,458 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,459 If you don't want 'fibsem.fm.calibration' to be distributed and are 2026-07-15T07:37:24,459 already explicitly excluding 'fibsem.fm.calibration' via 2026-07-15T07:37:24,459 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,460 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,460 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,461 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,462 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,463 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,463 even if it does not contain any `.py` files. 2026-07-15T07:37:24,463 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,464 directory, all directories are treated like packages. 2026-07-15T07:37:24,464 ******************************************************************************** 2026-07-15T07:37:24,465 !! 2026-07-15T07:37:24,466 check.warn(importable) 2026-07-15T07:37:24,466 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.imaging' is absent from the `packages` configuration. 2026-07-15T07:37:24,467 !! 2026-07-15T07:37:24,468 ******************************************************************************** 2026-07-15T07:37:24,468 ############################ 2026-07-15T07:37:24,469 # Package would be ignored # 2026-07-15T07:37:24,469 ############################ 2026-07-15T07:37:24,470 Python recognizes 'fibsem.imaging' as an importable package[^1], 2026-07-15T07:37:24,470 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,472 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,472 package, please make sure that 'fibsem.imaging' is explicitly added 2026-07-15T07:37:24,473 to the `packages` configuration field. 2026-07-15T07:37:24,475 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,475 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,476 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,477 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,478 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,479 If you don't want 'fibsem.imaging' to be distributed and are 2026-07-15T07:37:24,479 already explicitly excluding 'fibsem.imaging' via 2026-07-15T07:37:24,480 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,480 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,481 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,482 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,483 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,484 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,485 even if it does not contain any `.py` files. 2026-07-15T07:37:24,486 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,486 directory, all directories are treated like packages. 2026-07-15T07:37:24,487 ******************************************************************************** 2026-07-15T07:37:24,487 !! 2026-07-15T07:37:24,488 check.warn(importable) 2026-07-15T07:37:24,488 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.imaging.tests' is absent from the `packages` configuration. 2026-07-15T07:37:24,488 !! 2026-07-15T07:37:24,489 ******************************************************************************** 2026-07-15T07:37:24,490 ############################ 2026-07-15T07:37:24,490 # Package would be ignored # 2026-07-15T07:37:24,490 ############################ 2026-07-15T07:37:24,491 Python recognizes 'fibsem.imaging.tests' as an importable package[^1], 2026-07-15T07:37:24,491 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,492 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,492 package, please make sure that 'fibsem.imaging.tests' is explicitly added 2026-07-15T07:37:24,493 to the `packages` configuration field. 2026-07-15T07:37:24,493 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,494 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,494 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,495 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,496 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,497 If you don't want 'fibsem.imaging.tests' to be distributed and are 2026-07-15T07:37:24,498 already explicitly excluding 'fibsem.imaging.tests' via 2026-07-15T07:37:24,498 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,499 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,499 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,500 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,502 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,503 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,504 even if it does not contain any `.py` files. 2026-07-15T07:37:24,504 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,505 directory, all directories are treated like packages. 2026-07-15T07:37:24,505 ******************************************************************************** 2026-07-15T07:37:24,506 !! 2026-07-15T07:37:24,506 check.warn(importable) 2026-07-15T07:37:24,507 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.microscopes' is absent from the `packages` configuration. 2026-07-15T07:37:24,507 !! 2026-07-15T07:37:24,508 ******************************************************************************** 2026-07-15T07:37:24,509 ############################ 2026-07-15T07:37:24,509 # Package would be ignored # 2026-07-15T07:37:24,510 ############################ 2026-07-15T07:37:24,510 Python recognizes 'fibsem.microscopes' as an importable package[^1], 2026-07-15T07:37:24,511 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,512 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,513 package, please make sure that 'fibsem.microscopes' is explicitly added 2026-07-15T07:37:24,513 to the `packages` configuration field. 2026-07-15T07:37:24,514 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,514 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,515 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,516 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,516 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,517 If you don't want 'fibsem.microscopes' to be distributed and are 2026-07-15T07:37:24,517 already explicitly excluding 'fibsem.microscopes' via 2026-07-15T07:37:24,518 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,518 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,518 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,519 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,521 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,521 even if it does not contain any `.py` files. 2026-07-15T07:37:24,522 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,522 directory, all directories are treated like packages. 2026-07-15T07:37:24,523 ******************************************************************************** 2026-07-15T07:37:24,524 !! 2026-07-15T07:37:24,524 check.warn(importable) 2026-07-15T07:37:24,525 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling' is absent from the `packages` configuration. 2026-07-15T07:37:24,525 !! 2026-07-15T07:37:24,526 ******************************************************************************** 2026-07-15T07:37:24,527 ############################ 2026-07-15T07:37:24,527 # Package would be ignored # 2026-07-15T07:37:24,528 ############################ 2026-07-15T07:37:24,528 Python recognizes 'fibsem.milling' as an importable package[^1], 2026-07-15T07:37:24,529 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,530 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,530 package, please make sure that 'fibsem.milling' is explicitly added 2026-07-15T07:37:24,531 to the `packages` configuration field. 2026-07-15T07:37:24,532 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,532 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,533 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,533 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,534 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,535 If you don't want 'fibsem.milling' to be distributed and are 2026-07-15T07:37:24,536 already explicitly excluding 'fibsem.milling' via 2026-07-15T07:37:24,537 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,537 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,538 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,539 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,540 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,541 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,541 even if it does not contain any `.py` files. 2026-07-15T07:37:24,542 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,542 directory, all directories are treated like packages. 2026-07-15T07:37:24,543 ******************************************************************************** 2026-07-15T07:37:24,544 !! 2026-07-15T07:37:24,544 check.warn(importable) 2026-07-15T07:37:24,544 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling.patterning' is absent from the `packages` configuration. 2026-07-15T07:37:24,545 !! 2026-07-15T07:37:24,546 ******************************************************************************** 2026-07-15T07:37:24,546 ############################ 2026-07-15T07:37:24,547 # Package would be ignored # 2026-07-15T07:37:24,547 ############################ 2026-07-15T07:37:24,548 Python recognizes 'fibsem.milling.patterning' as an importable package[^1], 2026-07-15T07:37:24,548 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,549 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,549 package, please make sure that 'fibsem.milling.patterning' is explicitly added 2026-07-15T07:37:24,550 to the `packages` configuration field. 2026-07-15T07:37:24,551 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,552 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,552 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,553 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,554 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,555 If you don't want 'fibsem.milling.patterning' to be distributed and are 2026-07-15T07:37:24,556 already explicitly excluding 'fibsem.milling.patterning' via 2026-07-15T07:37:24,557 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,557 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,558 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,559 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,559 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,561 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,562 even if it does not contain any `.py` files. 2026-07-15T07:37:24,562 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,563 directory, all directories are treated like packages. 2026-07-15T07:37:24,563 ******************************************************************************** 2026-07-15T07:37:24,564 !! 2026-07-15T07:37:24,565 check.warn(importable) 2026-07-15T07:37:24,566 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling.strategy' is absent from the `packages` configuration. 2026-07-15T07:37:24,566 !! 2026-07-15T07:37:24,567 ******************************************************************************** 2026-07-15T07:37:24,568 ############################ 2026-07-15T07:37:24,568 # Package would be ignored # 2026-07-15T07:37:24,570 ############################ 2026-07-15T07:37:24,570 Python recognizes 'fibsem.milling.strategy' as an importable package[^1], 2026-07-15T07:37:24,570 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,571 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,572 package, please make sure that 'fibsem.milling.strategy' is explicitly added 2026-07-15T07:37:24,572 to the `packages` configuration field. 2026-07-15T07:37:24,573 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,574 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,574 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,575 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,576 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,577 If you don't want 'fibsem.milling.strategy' to be distributed and are 2026-07-15T07:37:24,578 already explicitly excluding 'fibsem.milling.strategy' via 2026-07-15T07:37:24,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,579 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,579 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,580 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,581 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,583 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,583 even if it does not contain any `.py` files. 2026-07-15T07:37:24,584 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,584 directory, all directories are treated like packages. 2026-07-15T07:37:24,585 ******************************************************************************** 2026-07-15T07:37:24,586 !! 2026-07-15T07:37:24,587 check.warn(importable) 2026-07-15T07:37:24,587 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation' is absent from the `packages` configuration. 2026-07-15T07:37:24,588 !! 2026-07-15T07:37:24,589 ******************************************************************************** 2026-07-15T07:37:24,590 ############################ 2026-07-15T07:37:24,590 # Package would be ignored # 2026-07-15T07:37:24,591 ############################ 2026-07-15T07:37:24,591 Python recognizes 'fibsem.segmentation' as an importable package[^1], 2026-07-15T07:37:24,592 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,593 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,594 package, please make sure that 'fibsem.segmentation' is explicitly added 2026-07-15T07:37:24,594 to the `packages` configuration field. 2026-07-15T07:37:24,595 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,596 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,597 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,598 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,599 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,600 If you don't want 'fibsem.segmentation' to be distributed and are 2026-07-15T07:37:24,600 already explicitly excluding 'fibsem.segmentation' via 2026-07-15T07:37:24,601 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,601 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,602 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,603 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,604 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,605 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,605 even if it does not contain any `.py` files. 2026-07-15T07:37:24,606 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,606 directory, all directories are treated like packages. 2026-07-15T07:37:24,606 ******************************************************************************** 2026-07-15T07:37:24,607 !! 2026-07-15T07:37:24,608 check.warn(importable) 2026-07-15T07:37:24,608 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs' is absent from the `packages` configuration. 2026-07-15T07:37:24,609 !! 2026-07-15T07:37:24,609 ******************************************************************************** 2026-07-15T07:37:24,610 ############################ 2026-07-15T07:37:24,610 # Package would be ignored # 2026-07-15T07:37:24,611 ############################ 2026-07-15T07:37:24,611 Python recognizes 'fibsem.segmentation.docs' as an importable package[^1], 2026-07-15T07:37:24,612 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,613 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,613 package, please make sure that 'fibsem.segmentation.docs' is explicitly added 2026-07-15T07:37:24,614 to the `packages` configuration field. 2026-07-15T07:37:24,615 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,615 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,616 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,617 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,618 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,619 If you don't want 'fibsem.segmentation.docs' to be distributed and are 2026-07-15T07:37:24,619 already explicitly excluding 'fibsem.segmentation.docs' via 2026-07-15T07:37:24,620 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,620 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,621 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,622 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,623 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,625 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,625 even if it does not contain any `.py` files. 2026-07-15T07:37:24,626 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,626 directory, all directories are treated like packages. 2026-07-15T07:37:24,627 ******************************************************************************** 2026-07-15T07:37:24,628 !! 2026-07-15T07:37:24,628 check.warn(importable) 2026-07-15T07:37:24,629 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.combined' is absent from the `packages` configuration. 2026-07-15T07:37:24,629 !! 2026-07-15T07:37:24,630 ******************************************************************************** 2026-07-15T07:37:24,631 ############################ 2026-07-15T07:37:24,631 # Package would be ignored # 2026-07-15T07:37:24,631 ############################ 2026-07-15T07:37:24,632 Python recognizes 'fibsem.segmentation.docs.imgs.combined' as an importable package[^1], 2026-07-15T07:37:24,632 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,633 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,634 package, please make sure that 'fibsem.segmentation.docs.imgs.combined' is explicitly added 2026-07-15T07:37:24,634 to the `packages` configuration field. 2026-07-15T07:37:24,635 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,635 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,636 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,637 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,638 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,639 If you don't want 'fibsem.segmentation.docs.imgs.combined' to be distributed and are 2026-07-15T07:37:24,639 already explicitly excluding 'fibsem.segmentation.docs.imgs.combined' via 2026-07-15T07:37:24,640 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,640 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,640 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,641 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,643 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,644 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,645 even if it does not contain any `.py` files. 2026-07-15T07:37:24,645 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,646 directory, all directories are treated like packages. 2026-07-15T07:37:24,646 ******************************************************************************** 2026-07-15T07:37:24,647 !! 2026-07-15T07:37:24,648 check.warn(importable) 2026-07-15T07:37:24,648 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.labelled' is absent from the `packages` configuration. 2026-07-15T07:37:24,649 !! 2026-07-15T07:37:24,650 ******************************************************************************** 2026-07-15T07:37:24,650 ############################ 2026-07-15T07:37:24,651 # Package would be ignored # 2026-07-15T07:37:24,651 ############################ 2026-07-15T07:37:24,652 Python recognizes 'fibsem.segmentation.docs.imgs.labelled' as an importable package[^1], 2026-07-15T07:37:24,652 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,654 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,654 package, please make sure that 'fibsem.segmentation.docs.imgs.labelled' is explicitly added 2026-07-15T07:37:24,655 to the `packages` configuration field. 2026-07-15T07:37:24,656 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,656 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,657 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,657 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,658 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,659 If you don't want 'fibsem.segmentation.docs.imgs.labelled' to be distributed and are 2026-07-15T07:37:24,659 already explicitly excluding 'fibsem.segmentation.docs.imgs.labelled' via 2026-07-15T07:37:24,660 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,660 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,661 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,662 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,663 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,664 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,665 even if it does not contain any `.py` files. 2026-07-15T07:37:24,665 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,665 directory, all directories are treated like packages. 2026-07-15T07:37:24,666 ******************************************************************************** 2026-07-15T07:37:24,667 !! 2026-07-15T07:37:24,667 check.warn(importable) 2026-07-15T07:37:24,668 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.raw' is absent from the `packages` configuration. 2026-07-15T07:37:24,668 !! 2026-07-15T07:37:24,669 ******************************************************************************** 2026-07-15T07:37:24,670 ############################ 2026-07-15T07:37:24,671 # Package would be ignored # 2026-07-15T07:37:24,671 ############################ 2026-07-15T07:37:24,672 Python recognizes 'fibsem.segmentation.docs.imgs.raw' as an importable package[^1], 2026-07-15T07:37:24,672 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,673 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,673 package, please make sure that 'fibsem.segmentation.docs.imgs.raw' is explicitly added 2026-07-15T07:37:24,674 to the `packages` configuration field. 2026-07-15T07:37:24,675 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,676 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,676 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,677 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,678 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,680 If you don't want 'fibsem.segmentation.docs.imgs.raw' to be distributed and are 2026-07-15T07:37:24,680 already explicitly excluding 'fibsem.segmentation.docs.imgs.raw' via 2026-07-15T07:37:24,681 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,682 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,682 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,683 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,685 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,686 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,686 even if it does not contain any `.py` files. 2026-07-15T07:37:24,687 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,687 directory, all directories are treated like packages. 2026-07-15T07:37:24,688 ******************************************************************************** 2026-07-15T07:37:24,688 !! 2026-07-15T07:37:24,689 check.warn(importable) 2026-07-15T07:37:24,689 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.models' is absent from the `packages` configuration. 2026-07-15T07:37:24,690 !! 2026-07-15T07:37:24,691 ******************************************************************************** 2026-07-15T07:37:24,691 ############################ 2026-07-15T07:37:24,692 # Package would be ignored # 2026-07-15T07:37:24,692 ############################ 2026-07-15T07:37:24,693 Python recognizes 'fibsem.segmentation.models' as an importable package[^1], 2026-07-15T07:37:24,693 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,694 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,694 package, please make sure that 'fibsem.segmentation.models' is explicitly added 2026-07-15T07:37:24,695 to the `packages` configuration field. 2026-07-15T07:37:24,696 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,697 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,698 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,699 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,700 If you don't want 'fibsem.segmentation.models' to be distributed and are 2026-07-15T07:37:24,700 already explicitly excluding 'fibsem.segmentation.models' via 2026-07-15T07:37:24,701 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,701 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,702 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,703 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,704 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,706 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,706 even if it does not contain any `.py` files. 2026-07-15T07:37:24,707 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,707 directory, all directories are treated like packages. 2026-07-15T07:37:24,708 ******************************************************************************** 2026-07-15T07:37:24,709 !! 2026-07-15T07:37:24,709 check.warn(importable) 2026-07-15T07:37:24,710 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.server' is absent from the `packages` configuration. 2026-07-15T07:37:24,710 !! 2026-07-15T07:37:24,712 ******************************************************************************** 2026-07-15T07:37:24,712 ############################ 2026-07-15T07:37:24,713 # Package would be ignored # 2026-07-15T07:37:24,714 ############################ 2026-07-15T07:37:24,714 Python recognizes 'fibsem.server' as an importable package[^1], 2026-07-15T07:37:24,715 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,716 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,716 package, please make sure that 'fibsem.server' is explicitly added 2026-07-15T07:37:24,716 to the `packages` configuration field. 2026-07-15T07:37:24,717 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,718 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,718 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,719 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,720 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,721 If you don't want 'fibsem.server' to be distributed and are 2026-07-15T07:37:24,721 already explicitly excluding 'fibsem.server' via 2026-07-15T07:37:24,722 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,722 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,723 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,724 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,725 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,726 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,727 even if it does not contain any `.py` files. 2026-07-15T07:37:24,727 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,728 directory, all directories are treated like packages. 2026-07-15T07:37:24,728 ******************************************************************************** 2026-07-15T07:37:24,729 !! 2026-07-15T07:37:24,730 check.warn(importable) 2026-07-15T07:37:24,730 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.tools' is absent from the `packages` configuration. 2026-07-15T07:37:24,731 !! 2026-07-15T07:37:24,732 ******************************************************************************** 2026-07-15T07:37:24,733 ############################ 2026-07-15T07:37:24,733 # Package would be ignored # 2026-07-15T07:37:24,734 ############################ 2026-07-15T07:37:24,734 Python recognizes 'fibsem.tools' as an importable package[^1], 2026-07-15T07:37:24,735 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,736 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,736 package, please make sure that 'fibsem.tools' is explicitly added 2026-07-15T07:37:24,737 to the `packages` configuration field. 2026-07-15T07:37:24,738 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,738 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,739 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,740 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,741 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,742 If you don't want 'fibsem.tools' to be distributed and are 2026-07-15T07:37:24,743 already explicitly excluding 'fibsem.tools' via 2026-07-15T07:37:24,743 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,744 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,744 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,745 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,746 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,747 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,748 even if it does not contain any `.py` files. 2026-07-15T07:37:24,748 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,749 directory, all directories are treated like packages. 2026-07-15T07:37:24,749 ******************************************************************************** 2026-07-15T07:37:24,750 !! 2026-07-15T07:37:24,750 check.warn(importable) 2026-07-15T07:37:24,751 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui' is absent from the `packages` configuration. 2026-07-15T07:37:24,751 !! 2026-07-15T07:37:24,752 ******************************************************************************** 2026-07-15T07:37:24,753 ############################ 2026-07-15T07:37:24,753 # Package would be ignored # 2026-07-15T07:37:24,754 ############################ 2026-07-15T07:37:24,754 Python recognizes 'fibsem.ui' as an importable package[^1], 2026-07-15T07:37:24,755 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,756 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,756 package, please make sure that 'fibsem.ui' is explicitly added 2026-07-15T07:37:24,757 to the `packages` configuration field. 2026-07-15T07:37:24,758 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,758 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,759 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,760 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,761 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,762 If you don't want 'fibsem.ui' to be distributed and are 2026-07-15T07:37:24,762 already explicitly excluding 'fibsem.ui' via 2026-07-15T07:37:24,763 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,763 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,764 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,765 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,766 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,767 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,768 even if it does not contain any `.py` files. 2026-07-15T07:37:24,768 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,769 directory, all directories are treated like packages. 2026-07-15T07:37:24,770 ******************************************************************************** 2026-07-15T07:37:24,771 !! 2026-07-15T07:37:24,771 check.warn(importable) 2026-07-15T07:37:24,772 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.fm.widgets' is absent from the `packages` configuration. 2026-07-15T07:37:24,773 !! 2026-07-15T07:37:24,774 ******************************************************************************** 2026-07-15T07:37:24,774 ############################ 2026-07-15T07:37:24,775 # Package would be ignored # 2026-07-15T07:37:24,775 ############################ 2026-07-15T07:37:24,775 Python recognizes 'fibsem.ui.fm.widgets' as an importable package[^1], 2026-07-15T07:37:24,776 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,777 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,777 package, please make sure that 'fibsem.ui.fm.widgets' is explicitly added 2026-07-15T07:37:24,778 to the `packages` configuration field. 2026-07-15T07:37:24,779 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,779 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,780 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,780 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,781 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,782 If you don't want 'fibsem.ui.fm.widgets' to be distributed and are 2026-07-15T07:37:24,783 already explicitly excluding 'fibsem.ui.fm.widgets' via 2026-07-15T07:37:24,783 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,784 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,784 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,785 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,786 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,788 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,788 even if it does not contain any `.py` files. 2026-07-15T07:37:24,789 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,789 directory, all directories are treated like packages. 2026-07-15T07:37:24,790 ******************************************************************************** 2026-07-15T07:37:24,791 !! 2026-07-15T07:37:24,791 check.warn(importable) 2026-07-15T07:37:24,792 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.icons' is absent from the `packages` configuration. 2026-07-15T07:37:24,792 !! 2026-07-15T07:37:24,793 ******************************************************************************** 2026-07-15T07:37:24,794 ############################ 2026-07-15T07:37:24,794 # Package would be ignored # 2026-07-15T07:37:24,795 ############################ 2026-07-15T07:37:24,795 Python recognizes 'fibsem.ui.icons' as an importable package[^1], 2026-07-15T07:37:24,796 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,797 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,797 package, please make sure that 'fibsem.ui.icons' is explicitly added 2026-07-15T07:37:24,798 to the `packages` configuration field. 2026-07-15T07:37:24,799 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,800 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,800 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,801 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,803 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,803 If you don't want 'fibsem.ui.icons' to be distributed and are 2026-07-15T07:37:24,804 already explicitly excluding 'fibsem.ui.icons' via 2026-07-15T07:37:24,804 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,805 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,805 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,806 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,807 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,809 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,810 even if it does not contain any `.py` files. 2026-07-15T07:37:24,810 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,811 directory, all directories are treated like packages. 2026-07-15T07:37:24,812 ******************************************************************************** 2026-07-15T07:37:24,814 !! 2026-07-15T07:37:24,815 check.warn(importable) 2026-07-15T07:37:24,816 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.napari' is absent from the `packages` configuration. 2026-07-15T07:37:24,817 !! 2026-07-15T07:37:24,819 ******************************************************************************** 2026-07-15T07:37:24,820 ############################ 2026-07-15T07:37:24,820 # Package would be ignored # 2026-07-15T07:37:24,821 ############################ 2026-07-15T07:37:24,822 Python recognizes 'fibsem.ui.napari' as an importable package[^1], 2026-07-15T07:37:24,822 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,824 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,825 package, please make sure that 'fibsem.ui.napari' is explicitly added 2026-07-15T07:37:24,825 to the `packages` configuration field. 2026-07-15T07:37:24,827 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,827 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,828 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,829 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,830 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,831 If you don't want 'fibsem.ui.napari' to be distributed and are 2026-07-15T07:37:24,832 already explicitly excluding 'fibsem.ui.napari' via 2026-07-15T07:37:24,833 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,833 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,834 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,835 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,836 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,837 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,838 even if it does not contain any `.py` files. 2026-07-15T07:37:24,838 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,839 directory, all directories are treated like packages. 2026-07-15T07:37:24,840 ******************************************************************************** 2026-07-15T07:37:24,841 !! 2026-07-15T07:37:24,841 check.warn(importable) 2026-07-15T07:37:24,842 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.qtdesigner_files' is absent from the `packages` configuration. 2026-07-15T07:37:24,842 !! 2026-07-15T07:37:24,843 ******************************************************************************** 2026-07-15T07:37:24,844 ############################ 2026-07-15T07:37:24,844 # Package would be ignored # 2026-07-15T07:37:24,845 ############################ 2026-07-15T07:37:24,845 Python recognizes 'fibsem.ui.qtdesigner_files' as an importable package[^1], 2026-07-15T07:37:24,845 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,846 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,847 package, please make sure that 'fibsem.ui.qtdesigner_files' is explicitly added 2026-07-15T07:37:24,847 to the `packages` configuration field. 2026-07-15T07:37:24,848 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,849 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,849 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,850 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,851 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,852 If you don't want 'fibsem.ui.qtdesigner_files' to be distributed and are 2026-07-15T07:37:24,853 already explicitly excluding 'fibsem.ui.qtdesigner_files' via 2026-07-15T07:37:24,853 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,853 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,854 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,855 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,856 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,858 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,858 even if it does not contain any `.py` files. 2026-07-15T07:37:24,859 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,859 directory, all directories are treated like packages. 2026-07-15T07:37:24,860 ******************************************************************************** 2026-07-15T07:37:24,861 !! 2026-07-15T07:37:24,862 check.warn(importable) 2026-07-15T07:37:24,863 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.widgets' is absent from the `packages` configuration. 2026-07-15T07:37:24,863 !! 2026-07-15T07:37:24,864 ******************************************************************************** 2026-07-15T07:37:24,865 ############################ 2026-07-15T07:37:24,866 # Package would be ignored # 2026-07-15T07:37:24,866 ############################ 2026-07-15T07:37:24,867 Python recognizes 'fibsem.ui.widgets' as an importable package[^1], 2026-07-15T07:37:24,868 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,869 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,870 package, please make sure that 'fibsem.ui.widgets' is explicitly added 2026-07-15T07:37:24,870 to the `packages` configuration field. 2026-07-15T07:37:24,872 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,872 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,872 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,873 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,874 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,875 If you don't want 'fibsem.ui.widgets' to be distributed and are 2026-07-15T07:37:24,876 already explicitly excluding 'fibsem.ui.widgets' via 2026-07-15T07:37:24,876 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,877 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,877 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,878 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,879 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,880 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,881 even if it does not contain any `.py` files. 2026-07-15T07:37:24,881 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,882 directory, all directories are treated like packages. 2026-07-15T07:37:24,883 ******************************************************************************** 2026-07-15T07:37:24,883 !! 2026-07-15T07:37:24,884 check.warn(importable) 2026-07-15T07:37:24,884 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.widgets.tests' is absent from the `packages` configuration. 2026-07-15T07:37:24,885 !! 2026-07-15T07:37:24,886 ******************************************************************************** 2026-07-15T07:37:24,886 ############################ 2026-07-15T07:37:24,887 # Package would be ignored # 2026-07-15T07:37:24,888 ############################ 2026-07-15T07:37:24,888 Python recognizes 'fibsem.ui.widgets.tests' as an importable package[^1], 2026-07-15T07:37:24,889 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,890 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,890 package, please make sure that 'fibsem.ui.widgets.tests' is explicitly added 2026-07-15T07:37:24,891 to the `packages` configuration field. 2026-07-15T07:37:24,892 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,893 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,893 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,894 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,895 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,896 If you don't want 'fibsem.ui.widgets.tests' to be distributed and are 2026-07-15T07:37:24,897 already explicitly excluding 'fibsem.ui.widgets.tests' via 2026-07-15T07:37:24,897 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,898 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,899 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,900 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,901 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,904 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,904 even if it does not contain any `.py` files. 2026-07-15T07:37:24,905 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,905 directory, all directories are treated like packages. 2026-07-15T07:37:24,906 ******************************************************************************** 2026-07-15T07:37:24,907 !! 2026-07-15T07:37:24,908 check.warn(importable) 2026-07-15T07:37:24,908 /tmp/pip-build-env-qkhfw96s/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.util' is absent from the `packages` configuration. 2026-07-15T07:37:24,909 !! 2026-07-15T07:37:24,910 ******************************************************************************** 2026-07-15T07:37:24,911 ############################ 2026-07-15T07:37:24,911 # Package would be ignored # 2026-07-15T07:37:24,912 ############################ 2026-07-15T07:37:24,912 Python recognizes 'fibsem.util' as an importable package[^1], 2026-07-15T07:37:24,913 but it is absent from setuptools' `packages` configuration. 2026-07-15T07:37:24,914 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-15T07:37:24,915 package, please make sure that 'fibsem.util' is explicitly added 2026-07-15T07:37:24,915 to the `packages` configuration field. 2026-07-15T07:37:24,918 Alternatively, you can also rely on setuptools' discovery methods 2026-07-15T07:37:24,918 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-15T07:37:24,919 instead of `find_packages(...)`/`find:`). 2026-07-15T07:37:24,920 You can read more about "package discovery" on setuptools documentation page: 2026-07-15T07:37:24,921 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-15T07:37:24,922 If you don't want 'fibsem.util' to be distributed and are 2026-07-15T07:37:24,923 already explicitly excluding 'fibsem.util' via 2026-07-15T07:37:24,924 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-15T07:37:24,924 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-15T07:37:24,925 combination with a more fine grained `package-data` configuration. 2026-07-15T07:37:24,926 You can read more about "package data files" on setuptools documentation page: 2026-07-15T07:37:24,928 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-15T07:37:24,930 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-15T07:37:24,931 even if it does not contain any `.py` files. 2026-07-15T07:37:24,931 On the other hand, currently there is no concept of package data 2026-07-15T07:37:24,932 directory, all directories are treated like packages. 2026-07-15T07:37:24,933 ******************************************************************************** 2026-07-15T07:37:24,935 !! 2026-07-15T07:37:24,935 check.warn(importable) 2026-07-15T07:37:24,936 creating build/lib/fibsem/alignment 2026-07-15T07:37:24,937 copying fibsem/alignment/__init__.py -> build/lib/fibsem/alignment 2026-07-15T07:37:24,938 copying fibsem/alignment/methods.py -> build/lib/fibsem/alignment 2026-07-15T07:37:24,939 copying fibsem/alignment/plotting.py -> build/lib/fibsem/alignment 2026-07-15T07:37:24,940 creating build/lib/fibsem/applications 2026-07-15T07:37:24,940 copying fibsem/applications/__init__.py -> build/lib/fibsem/applications 2026-07-15T07:37:24,941 creating build/lib/fibsem/applications/autolamella 2026-07-15T07:37:24,942 copying fibsem/applications/autolamella/__init__.py -> build/lib/fibsem/applications/autolamella 2026-07-15T07:37:24,943 copying fibsem/applications/autolamella/config.py -> build/lib/fibsem/applications/autolamella 2026-07-15T07:37:24,944 copying fibsem/applications/autolamella/structures.py -> build/lib/fibsem/applications/autolamella 2026-07-15T07:37:24,945 copying fibsem/applications/autolamella/task_manager_queue.md -> build/lib/fibsem/applications/autolamella 2026-07-15T07:37:24,946 creating build/lib/fibsem/applications/autolamella/compat 2026-07-15T07:37:24,946 copying fibsem/applications/autolamella/compat/notebook.ipynb -> build/lib/fibsem/applications/autolamella/compat 2026-07-15T07:37:24,947 copying fibsem/applications/autolamella/compat/odemis.py -> build/lib/fibsem/applications/autolamella/compat 2026-07-15T07:37:24,948 creating build/lib/fibsem/applications/autolamella/protocol 2026-07-15T07:37:24,948 copying fibsem/applications/autolamella/protocol/.gitkeep -> build/lib/fibsem/applications/autolamella/protocol 2026-07-15T07:37:24,949 copying fibsem/applications/autolamella/protocol/__init__.py -> build/lib/fibsem/applications/autolamella/protocol 2026-07-15T07:37:24,950 copying fibsem/applications/autolamella/protocol/constants.py -> build/lib/fibsem/applications/autolamella/protocol 2026-07-15T07:37:24,950 copying fibsem/applications/autolamella/protocol/legacy.py -> build/lib/fibsem/applications/autolamella/protocol 2026-07-15T07:37:24,951 copying fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml -> build/lib/fibsem/applications/autolamella/protocol 2026-07-15T07:37:24,951 copying fibsem/applications/autolamella/protocol/task-protocol.yaml -> build/lib/fibsem/applications/autolamella/protocol 2026-07-15T07:37:24,952 copying fibsem/applications/autolamella/protocol/validation.py -> build/lib/fibsem/applications/autolamella/protocol 2026-07-15T07:37:24,953 creating build/lib/fibsem/applications/autolamella/protocol/development 2026-07-15T07:37:24,954 copying fibsem/applications/autolamella/protocol/development/task-protocol-coincidence.yaml -> build/lib/fibsem/applications/autolamella/protocol/development 2026-07-15T07:37:24,954 creating build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:24,955 copying fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:24,956 copying fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:24,956 copying fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:24,957 copying fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:24,958 copying fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:24,958 creating build/lib/fibsem/applications/autolamella/tools 2026-07-15T07:37:24,959 copying fibsem/applications/autolamella/tools/__init__.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-15T07:37:24,959 copying fibsem/applications/autolamella/tools/bug_report.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-15T07:37:24,960 copying fibsem/applications/autolamella/tools/data.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-15T07:37:24,961 copying fibsem/applications/autolamella/tools/notebook.ipynb -> build/lib/fibsem/applications/autolamella/tools 2026-07-15T07:37:24,962 copying fibsem/applications/autolamella/tools/reporting.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-15T07:37:24,962 copying fibsem/applications/autolamella/tools/review.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-15T07:37:24,963 copying fibsem/applications/autolamella/tools/stats.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-15T07:37:24,964 copying fibsem/applications/autolamella/tools/upload_to_hf.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-15T07:37:24,964 creating build/lib/fibsem/applications/autolamella/ui 2026-07-15T07:37:24,965 copying fibsem/applications/autolamella/ui/AutoLamellaMainUI.py -> build/lib/fibsem/applications/autolamella/ui 2026-07-15T07:37:24,966 copying fibsem/applications/autolamella/ui/AutoLamellaUI.py -> build/lib/fibsem/applications/autolamella/ui 2026-07-15T07:37:24,966 copying fibsem/applications/autolamella/ui/__init__.py -> build/lib/fibsem/applications/autolamella/ui 2026-07-15T07:37:24,967 copying fibsem/applications/autolamella/ui/autolamella_fluorescence_acquisition_task_config_widget.py -> build/lib/fibsem/applications/autolamella/ui 2026-07-15T07:37:24,968 copying fibsem/applications/autolamella/ui/run_ui.py -> build/lib/fibsem/applications/autolamella/ui 2026-07-15T07:37:24,968 creating build/lib/fibsem/applications/autolamella/ui/tests 2026-07-15T07:37:24,969 copying fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py -> build/lib/fibsem/applications/autolamella/ui/tests 2026-07-15T07:37:24,969 creating build/lib/fibsem/applications/autolamella/workflows 2026-07-15T07:37:24,970 copying fibsem/applications/autolamella/workflows/_default_milling_config.py -> build/lib/fibsem/applications/autolamella/workflows 2026-07-15T07:37:24,971 copying fibsem/applications/autolamella/workflows/core.py -> build/lib/fibsem/applications/autolamella/workflows 2026-07-15T07:37:24,971 copying fibsem/applications/autolamella/workflows/ui.py -> build/lib/fibsem/applications/autolamella/workflows 2026-07-15T07:37:24,972 creating build/lib/fibsem/applications/autolamella/workflows/legacy 2026-07-15T07:37:24,973 copying fibsem/applications/autolamella/workflows/legacy/autoliftout.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-07-15T07:37:24,973 copying fibsem/applications/autolamella/workflows/legacy/experimental.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-07-15T07:37:24,974 copying fibsem/applications/autolamella/workflows/legacy/serial.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-07-15T07:37:24,975 creating build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,975 copying fibsem/applications/autolamella/workflows/tasks/__init__.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,976 copying fibsem/applications/autolamella/workflows/tasks/acquire_fluorescence.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,977 copying fibsem/applications/autolamella/workflows/tasks/base.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,977 copying fibsem/applications/autolamella/workflows/tasks/basic_milling.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,978 copying fibsem/applications/autolamella/workflows/tasks/fiducial.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,979 copying fibsem/applications/autolamella/workflows/tasks/grid-task-notebook.ipynb -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,979 copying fibsem/applications/autolamella/workflows/tasks/grid_tasks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,980 copying fibsem/applications/autolamella/workflows/tasks/hooks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,981 copying fibsem/applications/autolamella/workflows/tasks/manager.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,982 copying fibsem/applications/autolamella/workflows/tasks/mill_coincident.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,983 copying fibsem/applications/autolamella/workflows/tasks/polishing.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,983 copying fibsem/applications/autolamella/workflows/tasks/queue.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,984 copying fibsem/applications/autolamella/workflows/tasks/reference_image.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,985 copying fibsem/applications/autolamella/workflows/tasks/rough.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,986 copying fibsem/applications/autolamella/workflows/tasks/select_fluorescence_position.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,986 copying fibsem/applications/autolamella/workflows/tasks/select_position.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,987 copying fibsem/applications/autolamella/workflows/tasks/spot_burn.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,987 copying fibsem/applications/autolamella/workflows/tasks/tasks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,988 copying fibsem/applications/autolamella/workflows/tasks/test_hooks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,988 copying fibsem/applications/autolamella/workflows/tasks/trench.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,989 copying fibsem/applications/autolamella/workflows/tasks/undercut.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:24,990 creating build/lib/fibsem/autofunctions 2026-07-15T07:37:24,990 copying fibsem/autofunctions/__init__.py -> build/lib/fibsem/autofunctions 2026-07-15T07:37:24,991 copying fibsem/autofunctions/acb.py -> build/lib/fibsem/autofunctions 2026-07-15T07:37:24,992 copying fibsem/autofunctions/autofocus.py -> build/lib/fibsem/autofunctions 2026-07-15T07:37:24,992 copying fibsem/autofunctions/charge_neutralisation.py -> build/lib/fibsem/autofunctions 2026-07-15T07:37:24,993 copying fibsem/autofunctions/gamma.py -> build/lib/fibsem/autofunctions 2026-07-15T07:37:24,994 copying fibsem/autofunctions/integration.py -> build/lib/fibsem/autofunctions 2026-07-15T07:37:24,994 copying fibsem/autofunctions/metrics.py -> build/lib/fibsem/autofunctions 2026-07-15T07:37:24,995 copying fibsem/autofunctions/plotting.py -> build/lib/fibsem/autofunctions 2026-07-15T07:37:24,996 copying fibsem/autofunctions/stacking.py -> build/lib/fibsem/autofunctions 2026-07-15T07:37:24,996 creating build/lib/fibsem/chat 2026-07-15T07:37:24,997 copying fibsem/chat/.gitignore -> build/lib/fibsem/chat 2026-07-15T07:37:24,998 copying fibsem/chat/main.py -> build/lib/fibsem/chat 2026-07-15T07:37:24,999 copying fibsem/chat/requirements.txt -> build/lib/fibsem/chat 2026-07-15T07:37:24,999 creating build/lib/fibsem/config 2026-07-15T07:37:25,000 copying fibsem/config/default-sample-holder.yaml -> build/lib/fibsem/config 2026-07-15T07:37:25,001 copying fibsem/config/microscope-configuration.yaml -> build/lib/fibsem/config 2026-07-15T07:37:25,001 copying fibsem/config/odemis-configuration.yaml -> build/lib/fibsem/config 2026-07-15T07:37:25,002 copying fibsem/config/sample-holder.yaml -> build/lib/fibsem/config 2026-07-15T07:37:25,003 copying fibsem/config/sim-arctis-configuration.yaml -> build/lib/fibsem/config 2026-07-15T07:37:25,003 copying fibsem/config/tescan-configuration.yaml -> build/lib/fibsem/config 2026-07-15T07:37:25,004 copying fibsem/config/tescan_manipulator.yaml -> build/lib/fibsem/config 2026-07-15T07:37:25,005 copying fibsem/config/tfs-aquilos2-configuration.yaml -> build/lib/fibsem/config 2026-07-15T07:37:25,005 copying fibsem/config/tfs-arctis-configuration.yaml -> build/lib/fibsem/config 2026-07-15T07:37:25,006 copying fibsem/config/tfs-hydra-configuration.yaml -> build/lib/fibsem/config 2026-07-15T07:37:25,006 creating build/lib/fibsem/config/fm 2026-07-15T07:37:25,007 copying fibsem/config/fm/fm-configuration-default.yaml -> build/lib/fibsem/config/fm 2026-07-15T07:37:25,007 creating build/lib/fibsem/correlation 2026-07-15T07:37:25,008 copying fibsem/correlation/README.md -> build/lib/fibsem/correlation 2026-07-15T07:37:25,009 copying fibsem/correlation/__init__.py -> build/lib/fibsem/correlation 2026-07-15T07:37:25,009 copying fibsem/correlation/correlation_v2.py -> build/lib/fibsem/correlation 2026-07-15T07:37:25,009 copying fibsem/correlation/io.py -> build/lib/fibsem/correlation 2026-07-15T07:37:25,010 copying fibsem/correlation/refractive_index.py -> build/lib/fibsem/correlation 2026-07-15T07:37:25,010 copying fibsem/correlation/structures.py -> build/lib/fibsem/correlation 2026-07-15T07:37:25,011 copying fibsem/correlation/test_correlation_v2.py -> build/lib/fibsem/correlation 2026-07-15T07:37:25,011 copying fibsem/correlation/util.py -> build/lib/fibsem/correlation 2026-07-15T07:37:25,012 creating build/lib/fibsem/correlation/pyto 2026-07-15T07:37:25,012 copying fibsem/correlation/pyto/__init__.py -> build/lib/fibsem/correlation/pyto 2026-07-15T07:37:25,013 copying fibsem/correlation/pyto/affine.py -> build/lib/fibsem/correlation/pyto 2026-07-15T07:37:25,013 copying fibsem/correlation/pyto/affine_2d.py -> build/lib/fibsem/correlation/pyto 2026-07-15T07:37:25,014 copying fibsem/correlation/pyto/attributes.py -> build/lib/fibsem/correlation/pyto 2026-07-15T07:37:25,015 copying fibsem/correlation/pyto/common.py -> build/lib/fibsem/correlation/pyto 2026-07-15T07:37:25,015 copying fibsem/correlation/pyto/points.py -> build/lib/fibsem/correlation/pyto 2026-07-15T07:37:25,016 copying fibsem/correlation/pyto/rigid_3d.py -> build/lib/fibsem/correlation/pyto 2026-07-15T07:37:25,016 copying fibsem/correlation/pyto/util.py -> build/lib/fibsem/correlation/pyto 2026-07-15T07:37:25,016 creating build/lib/fibsem/correlation/pyto/test 2026-07-15T07:37:25,017 copying fibsem/correlation/pyto/test/test_affine.py -> build/lib/fibsem/correlation/pyto/test 2026-07-15T07:37:25,018 copying fibsem/correlation/pyto/test/test_affine_2d.py -> build/lib/fibsem/correlation/pyto/test 2026-07-15T07:37:25,018 copying fibsem/correlation/pyto/test/test_rigid_3d.py -> build/lib/fibsem/correlation/pyto/test 2026-07-15T07:37:25,019 creating build/lib/fibsem/correlation/tests 2026-07-15T07:37:25,019 copying fibsem/correlation/tests/__init__.py -> build/lib/fibsem/correlation/tests 2026-07-15T07:37:25,020 copying fibsem/correlation/tests/eval_lut_precision.py -> build/lib/fibsem/correlation/tests 2026-07-15T07:37:25,020 copying fibsem/correlation/tests/test_structures.py -> build/lib/fibsem/correlation/tests 2026-07-15T07:37:25,021 creating build/lib/fibsem/correlation/ui 2026-07-15T07:37:25,021 copying fibsem/correlation/ui/__init__.py -> build/lib/fibsem/correlation/ui 2026-07-15T07:37:25,022 creating build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,022 copying fibsem/correlation/ui/widgets/__init__.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,023 copying fibsem/correlation/ui/widgets/coordinate_list_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,023 copying fibsem/correlation/ui/widgets/correlation_input_data_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,024 copying fibsem/correlation/ui/widgets/correlation_point_picker_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,024 copying fibsem/correlation/ui/widgets/correlation_result_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,025 copying fibsem/correlation/ui/widgets/correlation_tab_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,025 copying fibsem/correlation/ui/widgets/fm_image_display_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,026 copying fibsem/correlation/ui/widgets/image_point_canvas.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,026 copying fibsem/correlation/ui/widgets/refractive_index_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,027 copying fibsem/correlation/ui/widgets/test_correlation_point_picker_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,027 copying fibsem/correlation/ui/widgets/test_correlation_tab_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,028 copying fibsem/correlation/ui/widgets/test_fm_image_display_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,029 copying fibsem/correlation/ui/widgets/test_image_point_canvas.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-15T07:37:25,029 creating build/lib/fibsem/detection 2026-07-15T07:37:25,029 copying fibsem/detection/__init__.py -> build/lib/fibsem/detection 2026-07-15T07:37:25,030 copying fibsem/detection/config-autolamella-liftout-hf-mega.yaml -> build/lib/fibsem/detection 2026-07-15T07:37:25,030 copying fibsem/detection/config-autolamella-liftout.yaml -> build/lib/fibsem/detection 2026-07-15T07:37:25,031 copying fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml -> build/lib/fibsem/detection 2026-07-15T07:37:25,031 copying fibsem/detection/config-autolamella-serial-liftout.yaml -> build/lib/fibsem/detection 2026-07-15T07:37:25,032 copying fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml -> build/lib/fibsem/detection 2026-07-15T07:37:25,034 copying fibsem/detection/config-autolamella-waffle-v2.yaml -> build/lib/fibsem/detection 2026-07-15T07:37:25,036 copying fibsem/detection/config-autolamella-waffle.yml -> build/lib/fibsem/detection 2026-07-15T07:37:25,038 copying fibsem/detection/config-autoliftout-dm-embryo.yml -> build/lib/fibsem/detection 2026-07-15T07:37:25,040 copying fibsem/detection/detection.py -> build/lib/fibsem/detection 2026-07-15T07:37:25,044 copying fibsem/detection/evaluation.py -> build/lib/fibsem/detection 2026-07-15T07:37:25,047 copying fibsem/detection/run_evaluation.py -> build/lib/fibsem/detection 2026-07-15T07:37:25,049 copying fibsem/detection/test_image.tif -> build/lib/fibsem/detection 2026-07-15T07:37:25,078 copying fibsem/detection/test_image_2.tif -> build/lib/fibsem/detection 2026-07-15T07:37:25,104 copying fibsem/detection/utils.py -> build/lib/fibsem/detection 2026-07-15T07:37:25,107 creating build/lib/fibsem/detection/test_images 2026-07-15T07:37:25,108 copying fibsem/detection/test_images/test_needle_mask.tif -> build/lib/fibsem/detection/test_images 2026-07-15T07:37:25,111 copying fibsem/detection/test_images/test_needle_mask2.tif -> build/lib/fibsem/detection/test_images 2026-07-15T07:37:25,114 copying fibsem/detection/test_images/test_needle_mask3.tif -> build/lib/fibsem/detection/test_images 2026-07-15T07:37:25,117 creating build/lib/fibsem/detection/test_images/serial 2026-07-15T07:37:25,118 copying fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-15T07:37:25,121 copying fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-15T07:37:25,124 copying fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-15T07:37:25,127 copying fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-15T07:37:25,131 copying fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-15T07:37:25,134 copying fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-15T07:37:25,137 copying fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-15T07:37:25,140 copying fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-15T07:37:25,143 creating build/lib/fibsem/fm 2026-07-15T07:37:25,144 copying fibsem/fm/__init__.py -> build/lib/fibsem/fm 2026-07-15T07:37:25,147 copying fibsem/fm/acquisition.py -> build/lib/fibsem/fm 2026-07-15T07:37:25,151 copying fibsem/fm/autoscript.py -> build/lib/fibsem/fm 2026-07-15T07:37:25,154 copying fibsem/fm/fm-example-notebook.ipynb -> build/lib/fibsem/fm 2026-07-15T07:37:25,157 copying fibsem/fm/fm-notebook.ipynb -> build/lib/fibsem/fm 2026-07-15T07:37:25,161 copying fibsem/fm/microscope.py -> build/lib/fibsem/fm 2026-07-15T07:37:25,164 copying fibsem/fm/odemis.py -> build/lib/fibsem/fm 2026-07-15T07:37:25,167 copying fibsem/fm/plot_autofocus_demo.py -> build/lib/fibsem/fm 2026-07-15T07:37:25,170 copying fibsem/fm/plotting.py -> build/lib/fibsem/fm 2026-07-15T07:37:25,173 copying fibsem/fm/structures.py -> build/lib/fibsem/fm 2026-07-15T07:37:25,177 copying fibsem/fm/timing.py -> build/lib/fibsem/fm 2026-07-15T07:37:25,180 creating build/lib/fibsem/fm/calibration 2026-07-15T07:37:25,181 copying fibsem/fm/calibration/__init__.py -> build/lib/fibsem/fm/calibration 2026-07-15T07:37:25,183 creating build/lib/fibsem/imaging 2026-07-15T07:37:25,184 copying fibsem/imaging/.gitkeep -> build/lib/fibsem/imaging 2026-07-15T07:37:25,187 copying fibsem/imaging/__init__.py -> build/lib/fibsem/imaging 2026-07-15T07:37:25,189 copying fibsem/imaging/drawing.py -> build/lib/fibsem/imaging 2026-07-15T07:37:25,192 copying fibsem/imaging/masks.py -> build/lib/fibsem/imaging 2026-07-15T07:37:25,194 copying fibsem/imaging/spot.py -> build/lib/fibsem/imaging 2026-07-15T07:37:25,197 copying fibsem/imaging/tiled.py -> build/lib/fibsem/imaging 2026-07-15T07:37:25,201 copying fibsem/imaging/transforms.py -> build/lib/fibsem/imaging 2026-07-15T07:37:25,203 copying fibsem/imaging/utils.py -> build/lib/fibsem/imaging 2026-07-15T07:37:25,205 creating build/lib/fibsem/imaging/tests 2026-07-15T07:37:25,206 copying fibsem/imaging/tests/__init__.py -> build/lib/fibsem/imaging/tests 2026-07-15T07:37:25,209 copying fibsem/imaging/tests/test_drawing_widget.py -> build/lib/fibsem/imaging/tests 2026-07-15T07:37:25,211 copying fibsem/imaging/tests/test_tile_order_strategies.py -> build/lib/fibsem/imaging/tests 2026-07-15T07:37:25,213 creating build/lib/fibsem/microscopes 2026-07-15T07:37:25,214 copying fibsem/microscopes/_stage.py -> build/lib/fibsem/microscopes 2026-07-15T07:37:25,217 copying fibsem/microscopes/autoscript.py -> build/lib/fibsem/microscopes 2026-07-15T07:37:25,220 copying fibsem/microscopes/notebook.ipynb -> build/lib/fibsem/microscopes 2026-07-15T07:37:25,223 copying fibsem/microscopes/odemis_microscope.py -> build/lib/fibsem/microscopes 2026-07-15T07:37:25,226 copying fibsem/microscopes/simulator.py -> build/lib/fibsem/microscopes 2026-07-15T07:37:25,230 copying fibsem/microscopes/tescan.py -> build/lib/fibsem/microscopes 2026-07-15T07:37:25,234 copying fibsem/microscopes/zeiss.py -> build/lib/fibsem/microscopes 2026-07-15T07:37:25,236 creating build/lib/fibsem/milling 2026-07-15T07:37:25,237 copying fibsem/milling/__init__.py -> build/lib/fibsem/milling 2026-07-15T07:37:25,239 copying fibsem/milling/base.py -> build/lib/fibsem/milling 2026-07-15T07:37:25,242 copying fibsem/milling/config.py -> build/lib/fibsem/milling 2026-07-15T07:37:25,244 copying fibsem/milling/core.py -> build/lib/fibsem/milling 2026-07-15T07:37:25,247 copying fibsem/milling/properties.py -> build/lib/fibsem/milling 2026-07-15T07:37:25,249 copying fibsem/milling/tasks.py -> build/lib/fibsem/milling 2026-07-15T07:37:25,252 creating build/lib/fibsem/milling/patterning 2026-07-15T07:37:25,253 copying fibsem/milling/patterning/__init__.py -> build/lib/fibsem/milling/patterning 2026-07-15T07:37:25,256 copying fibsem/milling/patterning/patterns2.py -> build/lib/fibsem/milling/patterning 2026-07-15T07:37:25,260 copying fibsem/milling/patterning/plotting.py -> build/lib/fibsem/milling/patterning 2026-07-15T07:37:25,263 copying fibsem/milling/patterning/utils.py -> build/lib/fibsem/milling/patterning 2026-07-15T07:37:25,266 creating build/lib/fibsem/milling/strategy 2026-07-15T07:37:25,267 copying fibsem/milling/strategy/__init__.py -> build/lib/fibsem/milling/strategy 2026-07-15T07:37:25,269 copying fibsem/milling/strategy/coincidence.py -> build/lib/fibsem/milling/strategy 2026-07-15T07:37:25,273 copying fibsem/milling/strategy/overtilt.py -> build/lib/fibsem/milling/strategy 2026-07-15T07:37:25,275 copying fibsem/milling/strategy/standard.py -> build/lib/fibsem/milling/strategy 2026-07-15T07:37:25,277 creating build/lib/fibsem/segmentation 2026-07-15T07:37:25,278 copying fibsem/segmentation/README.md -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,281 copying fibsem/segmentation/__init__.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,283 copying fibsem/segmentation/_nnunet.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,286 copying fibsem/segmentation/adaptive_model.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,288 copying fibsem/segmentation/augmentation.ipynb -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,290 copying fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,293 copying fibsem/segmentation/config-autolamella-mega-v4.yml -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,295 copying fibsem/segmentation/config-autolamella-mega-v5.yml -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,297 copying fibsem/segmentation/config-autolamella-waffle4.yml -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,299 copying fibsem/segmentation/config.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,301 copying fibsem/segmentation/config.yml -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,303 copying fibsem/segmentation/dataset.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,306 copying fibsem/segmentation/example.ipynb -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,310 copying fibsem/segmentation/hf_segmentation_model.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,313 copying fibsem/segmentation/huggingface.ipynb -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,316 copying fibsem/segmentation/inference.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,318 copying fibsem/segmentation/model.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,321 copying fibsem/segmentation/nnunet_model.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,323 copying fibsem/segmentation/nnunet_model_v2.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,325 copying fibsem/segmentation/onnx_model.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,328 copying fibsem/segmentation/requirements.txt -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,330 copying fibsem/segmentation/sam_model.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,333 copying fibsem/segmentation/segmentation_config.yaml -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,335 copying fibsem/segmentation/test_image.tif -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,360 copying fibsem/segmentation/train.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,363 copying fibsem/segmentation/utils.py -> build/lib/fibsem/segmentation 2026-07-15T07:37:25,365 creating build/lib/fibsem/segmentation/docs 2026-07-15T07:37:25,366 copying fibsem/segmentation/docs/example_napari.png -> build/lib/fibsem/segmentation/docs 2026-07-15T07:37:25,410 creating build/lib/fibsem/segmentation/docs/imgs/combined 2026-07-15T07:37:25,412 copying fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/lib/fibsem/segmentation/docs/imgs/combined 2026-07-15T07:37:25,433 creating build/lib/fibsem/segmentation/docs/imgs/labelled 2026-07-15T07:37:25,435 copying fibsem/segmentation/docs/imgs/labelled/label.tif -> build/lib/fibsem/segmentation/docs/imgs/labelled 2026-07-15T07:37:25,461 creating build/lib/fibsem/segmentation/docs/imgs/raw 2026-07-15T07:37:25,462 copying fibsem/segmentation/docs/imgs/raw/image.tif -> build/lib/fibsem/segmentation/docs/imgs/raw 2026-07-15T07:37:25,491 creating build/lib/fibsem/segmentation/models 2026-07-15T07:37:25,492 copying fibsem/segmentation/models/.gitkeep -> build/lib/fibsem/segmentation/models 2026-07-15T07:37:25,494 creating build/lib/fibsem/server 2026-07-15T07:37:25,495 copying fibsem/server/GAPS.md -> build/lib/fibsem/server 2026-07-15T07:37:25,498 copying fibsem/server/README.md -> build/lib/fibsem/server 2026-07-15T07:37:25,500 copying fibsem/server/__init__.py -> build/lib/fibsem/server 2026-07-15T07:37:25,503 copying fibsem/server/client.py -> build/lib/fibsem/server 2026-07-15T07:37:25,505 copying fibsem/server/models.py -> build/lib/fibsem/server 2026-07-15T07:37:25,507 copying fibsem/server/server.py -> build/lib/fibsem/server 2026-07-15T07:37:25,510 creating build/lib/fibsem/tools 2026-07-15T07:37:25,511 copying fibsem/tools/_parser.py -> build/lib/fibsem/tools 2026-07-15T07:37:25,514 copying fibsem/tools/_streamlit.py -> build/lib/fibsem/tools 2026-07-15T07:37:25,516 copying fibsem/tools/beam_shift_alignment_test.py -> build/lib/fibsem/tools 2026-07-15T07:37:25,518 copying fibsem/tools/run_manipulator_calibration.py -> build/lib/fibsem/tools 2026-07-15T07:37:25,520 copying fibsem/tools/run_split_dataset.py -> build/lib/fibsem/tools 2026-07-15T07:37:25,523 copying fibsem/tools/telemetry.py -> build/lib/fibsem/tools 2026-07-15T07:37:25,525 creating build/lib/fibsem/ui 2026-07-15T07:37:25,526 copying fibsem/ui/.gitkeep -> build/lib/fibsem/ui 2026-07-15T07:37:25,528 copying fibsem/ui/FMAcquisitionWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,532 copying fibsem/ui/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,534 copying fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,536 copying fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,539 copying fibsem/ui/FibsemFeatureLabellingUI.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,542 copying fibsem/ui/FibsemImageSettingsWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,545 copying fibsem/ui/FibsemLabellingUI.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,548 copying fibsem/ui/FibsemManipulatorWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,551 copying fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,553 copying fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,556 copying fibsem/ui/FibsemMinimapWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,560 copying fibsem/ui/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,562 copying fibsem/ui/FibsemMovementWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,565 copying fibsem/ui/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,568 copying fibsem/ui/FibsemSpotBurnWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,571 copying fibsem/ui/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,574 copying fibsem/ui/FibsemUI.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,576 copying fibsem/ui/__init__.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,578 copying fibsem/ui/icon.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,581 copying fibsem/ui/notification_service.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,583 copying fibsem/ui/stylesheets.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,586 copying fibsem/ui/utils.py -> build/lib/fibsem/ui 2026-07-15T07:37:25,588 creating build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,590 copying fibsem/ui/fm/widgets/__init__.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,592 copying fibsem/ui/fm/widgets/acquisition_summary_dialog.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,595 copying fibsem/ui/fm/widgets/autofocus_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,598 copying fibsem/ui/fm/widgets/autofocus_widget_demo.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,600 copying fibsem/ui/fm/widgets/camera_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,603 copying fibsem/ui/fm/widgets/channel_list_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,606 copying fibsem/ui/fm/widgets/channel_settings_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,609 copying fibsem/ui/fm/widgets/display_options_dialog.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,611 copying fibsem/ui/fm/widgets/fluorescence_plot_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,614 copying fibsem/ui/fm/widgets/fm_image_viewer_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,616 copying fibsem/ui/fm/widgets/fm_multi_channel_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,619 copying fibsem/ui/fm/widgets/histogram_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,621 copying fibsem/ui/fm/widgets/line_plot_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,624 copying fibsem/ui/fm/widgets/load_image_dialog.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,627 copying fibsem/ui/fm/widgets/minimap_plot_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,630 copying fibsem/ui/fm/widgets/minimap_plot_widget_example.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,633 copying fibsem/ui/fm/widgets/objective_control_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,636 copying fibsem/ui/fm/widgets/overview_confirmation_dialog.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,639 copying fibsem/ui/fm/widgets/overview_parameters_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,642 copying fibsem/ui/fm/widgets/saved_positions_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,644 copying fibsem/ui/fm/widgets/sem_acquisition_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,647 copying fibsem/ui/fm/widgets/stage_position_control_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,650 copying fibsem/ui/fm/widgets/test_channel_list_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,652 copying fibsem/ui/fm/widgets/test_line_plot.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,655 copying fibsem/ui/fm/widgets/z_parameters_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-15T07:37:25,657 creating build/lib/fibsem/ui/icons 2026-07-15T07:37:25,658 copying fibsem/ui/icons/check.svg -> build/lib/fibsem/ui/icons 2026-07-15T07:37:25,661 copying fibsem/ui/icons/chevron_down.svg -> build/lib/fibsem/ui/icons 2026-07-15T07:37:25,663 copying fibsem/ui/icons/drag_handle.svg -> build/lib/fibsem/ui/icons 2026-07-15T07:37:25,665 copying fibsem/ui/icons/minus.svg -> build/lib/fibsem/ui/icons 2026-07-15T07:37:25,667 copying fibsem/ui/icons/plus.svg -> build/lib/fibsem/ui/icons 2026-07-15T07:37:25,669 creating build/lib/fibsem/ui/napari 2026-07-15T07:37:25,670 copying fibsem/ui/napari/patterns.py -> build/lib/fibsem/ui/napari 2026-07-15T07:37:25,674 copying fibsem/ui/napari/properties.py -> build/lib/fibsem/ui/napari 2026-07-15T07:37:25,676 copying fibsem/ui/napari/utilities.py -> build/lib/fibsem/ui/napari 2026-07-15T07:37:25,679 creating build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,681 copying fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,683 copying fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,686 copying fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,689 copying fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,692 copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,694 copying fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,697 copying fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,700 copying fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,702 copying fibsem/ui/qtdesigner_files/FibsemSpotBurnWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,705 copying fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,707 copying fibsem/ui/qtdesigner_files/FibsemUI.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,710 copying fibsem/ui/qtdesigner_files/detection_dialog.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,713 copying fibsem/ui/qtdesigner_files/image_viewer.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-15T07:37:25,717 creating build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,718 copying fibsem/ui/widgets/angle_measure.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,722 copying fibsem/ui/widgets/annotation_pin.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,725 copying fibsem/ui/widgets/autolamella_apply_protocol_dialog.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,729 copying fibsem/ui/widgets/autolamella_create_experiment_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,732 copying fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,736 copying fibsem/ui/widgets/autolamella_generate_report_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,740 copying fibsem/ui/widgets/autolamella_global_task_editor_dialog.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,743 copying fibsem/ui/widgets/autolamella_lamella_protocol_editor.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,748 copying fibsem/ui/widgets/autolamella_load_experiment_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,752 copying fibsem/ui/widgets/autolamella_load_task_protocol_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,756 copying fibsem/ui/widgets/autolamella_overview_image_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,760 copying fibsem/ui/widgets/autolamella_protocol_information_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,763 copying fibsem/ui/widgets/autolamella_spot_burn_coordinates_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,766 copying fibsem/ui/widgets/autolamella_task_config_editor.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,770 copying fibsem/ui/widgets/autolamella_task_config_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,774 copying fibsem/ui/widgets/beam_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,778 copying fibsem/ui/widgets/beam_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,782 copying fibsem/ui/widgets/bug_report_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,786 copying fibsem/ui/widgets/contrast_gamma_control.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,789 copying fibsem/ui/widgets/custom_widgets.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,793 copying fibsem/ui/widgets/dataframe_table_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,797 copying fibsem/ui/widgets/detector_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,800 copying fibsem/ui/widgets/drag_distance.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,804 copying fibsem/ui/widgets/dual_beam_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,807 copying fibsem/ui/widgets/fibsem_image_flow_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,811 copying fibsem/ui/widgets/fluorescence_coincidence_viewer_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,815 copying fibsem/ui/widgets/fluorescence_coincidence_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,819 copying fibsem/ui/widgets/fluorescence_control_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,823 copying fibsem/ui/widgets/hook_config_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,827 copying fibsem/ui/widgets/hud_ticker.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,830 copying fibsem/ui/widgets/image_annotation_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,833 copying fibsem/ui/widgets/image_canvas.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,838 copying fibsem/ui/widgets/image_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,841 copying fibsem/ui/widgets/lamella_card_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,845 copying fibsem/ui/widgets/lamella_default_config_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,849 copying fibsem/ui/widgets/lamella_list_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,852 copying fibsem/ui/widgets/lamella_pose_list_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,856 copying fibsem/ui/widgets/lamella_task_image_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,860 copying fibsem/ui/widgets/lamella_workflow_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,863 copying fibsem/ui/widgets/microscope_config_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,867 copying fibsem/ui/widgets/milling_alignment_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,871 copying fibsem/ui/widgets/milling_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,875 copying fibsem/ui/widgets/milling_stage_list_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,879 copying fibsem/ui/widgets/milling_stages_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,883 copying fibsem/ui/widgets/milling_task_acquisition_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,887 copying fibsem/ui/widgets/milling_task_config_widget2.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,891 copying fibsem/ui/widgets/milling_task_viewer_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,895 copying fibsem/ui/widgets/milling_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,899 copying fibsem/ui/widgets/notifications.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,903 copying fibsem/ui/widgets/overview_acquisition_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,907 copying fibsem/ui/widgets/pattern_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,911 copying fibsem/ui/widgets/preferences_dialog.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,916 copying fibsem/ui/widgets/profile_line.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,919 copying fibsem/ui/widgets/progress_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,923 copying fibsem/ui/widgets/radial_menu.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,927 copying fibsem/ui/widgets/reference_image_parameters_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,931 copying fibsem/ui/widgets/sample_holder_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,935 copying fibsem/ui/widgets/saved_position_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,939 copying fibsem/ui/widgets/selected_lamella_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,943 copying fibsem/ui/widgets/strategy_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,947 copying fibsem/ui/widgets/task_history_table_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,951 copying fibsem/ui/widgets/task_summary_formatting.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,954 copying fibsem/ui/widgets/tiled_overview_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,958 copying fibsem/ui/widgets/workflow_config_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,962 copying fibsem/ui/widgets/workflow_info_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,966 copying fibsem/ui/widgets/workflow_summary_dialog.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,970 copying fibsem/ui/widgets/workflow_task_editor_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,974 copying fibsem/ui/widgets/workflow_timeline_widget.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,979 copying fibsem/ui/widgets/zoom_loupe.py -> build/lib/fibsem/ui/widgets 2026-07-15T07:37:25,982 creating build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:25,984 copying fibsem/ui/widgets/tests/test-icon-tool-button.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:25,988 copying fibsem/ui/widgets/tests/test-image-settings-widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:25,991 copying fibsem/ui/widgets/tests/test-lamella-card.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:25,995 copying fibsem/ui/widgets/tests/test-lamella-list.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:25,998 copying fibsem/ui/widgets/tests/test-lamella-workflow.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,002 copying fibsem/ui/widgets/tests/test-progress-bar.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,006 copying fibsem/ui/widgets/tests/test-selected-lamella.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,009 copying fibsem/ui/widgets/tests/test-spinner-icon.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,013 copying fibsem/ui/widgets/tests/test-workflow-config.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,016 copying fibsem/ui/widgets/tests/test_alignment_comparison.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,019 copying fibsem/ui/widgets/tests/test_alignment_plot_v2.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,022 copying fibsem/ui/widgets/tests/test_countdown_progress.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,025 copying fibsem/ui/widgets/tests/test_drag_distance.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,028 copying fibsem/ui/widgets/tests/test_hooks_manual.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,031 copying fibsem/ui/widgets/tests/test_image_canvas.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,034 copying fibsem/ui/widgets/tests/test_lamella_default_config_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,037 copying fibsem/ui/widgets/tests/test_lamella_name_list_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,039 copying fibsem/ui/widgets/tests/test_lamella_task_image_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,042 copying fibsem/ui/widgets/tests/test_milling_settings_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,045 copying fibsem/ui/widgets/tests/test_milling_stage_list.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,048 copying fibsem/ui/widgets/tests/test_milling_stages_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,050 copying fibsem/ui/widgets/tests/test_milling_task_config_widget2.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,053 copying fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,056 copying fibsem/ui/widgets/tests/test_pattern_settings_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,059 copying fibsem/ui/widgets/tests/test_progress_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,062 copying fibsem/ui/widgets/tests/test_radial_menu.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,065 copying fibsem/ui/widgets/tests/test_radial_ruler_demo.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,068 copying fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,071 copying fibsem/ui/widgets/tests/test_saved_position_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,074 copying fibsem/ui/widgets/tests/test_splitter_layouts.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,077 copying fibsem/ui/widgets/tests/test_toast.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,079 copying fibsem/ui/widgets/tests/test_workflow_task_editor_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,082 copying fibsem/ui/widgets/tests/test_workflow_timeline_animation.py -> build/lib/fibsem/ui/widgets/tests 2026-07-15T07:37:26,085 creating build/lib/fibsem/util 2026-07-15T07:37:26,087 copying fibsem/util/__init__.py -> build/lib/fibsem/util 2026-07-15T07:37:26,089 copying fibsem/util/draw_numbers.py -> build/lib/fibsem/util 2026-07-15T07:37:26,092 copying fibsem/util/filename.py -> build/lib/fibsem/util 2026-07-15T07:37:26,112 installing to build/bdist.linux-armv7l/wheel 2026-07-15T07:37:26,112 running install 2026-07-15T07:37:26,136 running install_lib 2026-07-15T07:37:26,144 creating build/bdist.linux-armv7l/wheel 2026-07-15T07:37:26,147 creating build/bdist.linux-armv7l/wheel/fibsem 2026-07-15T07:37:26,149 creating build/bdist.linux-armv7l/wheel/fibsem/util 2026-07-15T07:37:26,151 copying build/lib/fibsem/util/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-07-15T07:37:26,153 copying build/lib/fibsem/util/draw_numbers.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-07-15T07:37:26,158 copying build/lib/fibsem/util/filename.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-07-15T07:37:26,160 creating build/bdist.linux-armv7l/wheel/fibsem/server 2026-07-15T07:37:26,162 copying build/lib/fibsem/server/client.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-15T07:37:26,165 copying build/lib/fibsem/server/GAPS.md -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-15T07:37:26,168 copying build/lib/fibsem/server/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-15T07:37:26,170 copying build/lib/fibsem/server/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-15T07:37:26,173 copying build/lib/fibsem/server/server.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-15T07:37:26,176 copying build/lib/fibsem/server/models.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-15T07:37:26,178 copying build/lib/fibsem/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:26,180 copying build/lib/fibsem/transformations.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:26,183 creating build/bdist.linux-armv7l/wheel/fibsem/chat 2026-07-15T07:37:26,184 copying build/lib/fibsem/chat/requirements.txt -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-07-15T07:37:26,187 copying build/lib/fibsem/chat/.gitignore -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-07-15T07:37:26,189 copying build/lib/fibsem/chat/main.py -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-07-15T07:37:26,192 creating build/bdist.linux-armv7l/wheel/fibsem/alignment 2026-07-15T07:37:26,193 copying build/lib/fibsem/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/alignment 2026-07-15T07:37:26,196 copying build/lib/fibsem/alignment/plotting.py -> build/bdist.linux-armv7l/wheel/./fibsem/alignment 2026-07-15T07:37:26,199 copying build/lib/fibsem/alignment/methods.py -> build/bdist.linux-armv7l/wheel/./fibsem/alignment 2026-07-15T07:37:26,202 copying build/lib/fibsem/microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:26,207 copying build/lib/fibsem/gis.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:26,210 copying build/lib/fibsem/config.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:26,214 creating build/bdist.linux-armv7l/wheel/fibsem/correlation 2026-07-15T07:37:26,215 copying build/lib/fibsem/correlation/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-15T07:37:26,218 copying build/lib/fibsem/correlation/util.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-15T07:37:26,222 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/tests 2026-07-15T07:37:26,224 copying build/lib/fibsem/correlation/tests/eval_lut_precision.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/tests 2026-07-15T07:37:26,226 copying build/lib/fibsem/correlation/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/tests 2026-07-15T07:37:26,228 copying build/lib/fibsem/correlation/tests/test_structures.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/tests 2026-07-15T07:37:26,231 copying build/lib/fibsem/correlation/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-15T07:37:26,234 copying build/lib/fibsem/correlation/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-15T07:37:26,237 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/ui 2026-07-15T07:37:26,238 copying build/lib/fibsem/correlation/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui 2026-07-15T07:37:26,241 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/ui/widgets 2026-07-15T07:37:26,243 copying build/lib/fibsem/correlation/ui/widgets/test_image_point_canvas.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,246 copying build/lib/fibsem/correlation/ui/widgets/test_fm_image_display_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,249 copying build/lib/fibsem/correlation/ui/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,251 copying build/lib/fibsem/correlation/ui/widgets/correlation_point_picker_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,254 copying build/lib/fibsem/correlation/ui/widgets/test_correlation_point_picker_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,256 copying build/lib/fibsem/correlation/ui/widgets/image_point_canvas.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,260 copying build/lib/fibsem/correlation/ui/widgets/refractive_index_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,262 copying build/lib/fibsem/correlation/ui/widgets/fm_image_display_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,266 copying build/lib/fibsem/correlation/ui/widgets/correlation_input_data_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,269 copying build/lib/fibsem/correlation/ui/widgets/correlation_tab_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,273 copying build/lib/fibsem/correlation/ui/widgets/test_correlation_tab_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,276 copying build/lib/fibsem/correlation/ui/widgets/correlation_result_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,279 copying build/lib/fibsem/correlation/ui/widgets/coordinate_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-15T07:37:26,282 copying build/lib/fibsem/correlation/correlation_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-15T07:37:26,286 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/pyto 2026-07-15T07:37:26,287 copying build/lib/fibsem/correlation/pyto/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-15T07:37:26,290 copying build/lib/fibsem/correlation/pyto/util.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-15T07:37:26,292 copying build/lib/fibsem/correlation/pyto/affine_2d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-15T07:37:26,296 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/pyto/test 2026-07-15T07:37:26,298 copying build/lib/fibsem/correlation/pyto/test/test_affine_2d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-07-15T07:37:26,301 copying build/lib/fibsem/correlation/pyto/test/test_rigid_3d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-07-15T07:37:26,305 copying build/lib/fibsem/correlation/pyto/test/test_affine.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-07-15T07:37:26,308 copying build/lib/fibsem/correlation/pyto/common.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-15T07:37:26,312 copying build/lib/fibsem/correlation/pyto/affine.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-15T07:37:26,315 copying build/lib/fibsem/correlation/pyto/points.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-15T07:37:26,318 copying build/lib/fibsem/correlation/pyto/attributes.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-15T07:37:26,320 copying build/lib/fibsem/correlation/pyto/rigid_3d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-15T07:37:26,324 copying build/lib/fibsem/correlation/refractive_index.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-15T07:37:26,327 copying build/lib/fibsem/correlation/io.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-15T07:37:26,330 copying build/lib/fibsem/correlation/test_correlation_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-15T07:37:26,333 creating build/bdist.linux-armv7l/wheel/fibsem/autofunctions 2026-07-15T07:37:26,335 copying build/lib/fibsem/autofunctions/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-15T07:37:26,337 copying build/lib/fibsem/autofunctions/acb.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-15T07:37:26,340 copying build/lib/fibsem/autofunctions/stacking.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-15T07:37:26,343 copying build/lib/fibsem/autofunctions/integration.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-15T07:37:26,346 copying build/lib/fibsem/autofunctions/plotting.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-15T07:37:26,348 copying build/lib/fibsem/autofunctions/charge_neutralisation.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-15T07:37:26,351 copying build/lib/fibsem/autofunctions/autofocus.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-15T07:37:26,354 copying build/lib/fibsem/autofunctions/gamma.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-15T07:37:26,357 copying build/lib/fibsem/autofunctions/metrics.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-15T07:37:26,360 copying build/lib/fibsem/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:26,366 creating build/bdist.linux-armv7l/wheel/fibsem/ui 2026-07-15T07:37:26,368 copying build/lib/fibsem/ui/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,371 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget_qt.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,374 copying build/lib/fibsem/ui/icon.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,377 copying build/lib/fibsem/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,379 copying build/lib/fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,382 copying build/lib/fibsem/ui/stylesheets.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,386 copying build/lib/fibsem/ui/notification_service.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,388 copying build/lib/fibsem/ui/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,392 copying build/lib/fibsem/ui/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,395 copying build/lib/fibsem/ui/FibsemFeatureLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,398 copying build/lib/fibsem/ui/FibsemUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,401 creating build/bdist.linux-armv7l/wheel/fibsem/ui/icons 2026-07-15T07:37:26,402 copying build/lib/fibsem/ui/icons/check.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-07-15T07:37:26,405 copying build/lib/fibsem/ui/icons/drag_handle.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-07-15T07:37:26,407 copying build/lib/fibsem/ui/icons/plus.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-07-15T07:37:26,410 copying build/lib/fibsem/ui/icons/chevron_down.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-07-15T07:37:26,412 copying build/lib/fibsem/ui/icons/minus.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-07-15T07:37:26,415 copying build/lib/fibsem/ui/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,418 creating build/bdist.linux-armv7l/wheel/fibsem/ui/fm 2026-07-15T07:37:26,420 creating build/bdist.linux-armv7l/wheel/fibsem/ui/fm/widgets 2026-07-15T07:37:26,422 copying build/lib/fibsem/ui/fm/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,424 copying build/lib/fibsem/ui/fm/widgets/sem_acquisition_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,427 copying build/lib/fibsem/ui/fm/widgets/acquisition_summary_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,430 copying build/lib/fibsem/ui/fm/widgets/z_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,432 copying build/lib/fibsem/ui/fm/widgets/display_options_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,435 copying build/lib/fibsem/ui/fm/widgets/channel_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,437 copying build/lib/fibsem/ui/fm/widgets/objective_control_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,440 copying build/lib/fibsem/ui/fm/widgets/autofocus_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,443 copying build/lib/fibsem/ui/fm/widgets/minimap_plot_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,446 copying build/lib/fibsem/ui/fm/widgets/fm_image_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,449 copying build/lib/fibsem/ui/fm/widgets/histogram_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,452 copying build/lib/fibsem/ui/fm/widgets/minimap_plot_widget_example.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,454 copying build/lib/fibsem/ui/fm/widgets/channel_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,458 copying build/lib/fibsem/ui/fm/widgets/load_image_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,460 copying build/lib/fibsem/ui/fm/widgets/saved_positions_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,464 copying build/lib/fibsem/ui/fm/widgets/camera_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,466 copying build/lib/fibsem/ui/fm/widgets/overview_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,469 copying build/lib/fibsem/ui/fm/widgets/autofocus_widget_demo.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,472 copying build/lib/fibsem/ui/fm/widgets/stage_position_control_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,474 copying build/lib/fibsem/ui/fm/widgets/fm_multi_channel_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,477 copying build/lib/fibsem/ui/fm/widgets/test_line_plot.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,479 copying build/lib/fibsem/ui/fm/widgets/test_channel_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,481 copying build/lib/fibsem/ui/fm/widgets/overview_confirmation_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,484 copying build/lib/fibsem/ui/fm/widgets/fluorescence_plot_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,487 copying build/lib/fibsem/ui/fm/widgets/line_plot_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-15T07:37:26,490 copying build/lib/fibsem/ui/FibsemSpotBurnWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,493 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,495 copying build/lib/fibsem/ui/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,500 creating build/bdist.linux-armv7l/wheel/fibsem/ui/widgets 2026-07-15T07:37:26,501 copying build/lib/fibsem/ui/widgets/image_canvas.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,505 copying build/lib/fibsem/ui/widgets/beam_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,508 copying build/lib/fibsem/ui/widgets/hook_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,510 copying build/lib/fibsem/ui/widgets/progress_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,513 copying build/lib/fibsem/ui/widgets/autolamella_lamella_protocol_editor.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,516 copying build/lib/fibsem/ui/widgets/lamella_workflow_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,519 copying build/lib/fibsem/ui/widgets/annotation_pin.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,522 copying build/lib/fibsem/ui/widgets/workflow_timeline_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,525 copying build/lib/fibsem/ui/widgets/strategy_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,527 copying build/lib/fibsem/ui/widgets/detector_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,530 copying build/lib/fibsem/ui/widgets/task_summary_formatting.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,533 copying build/lib/fibsem/ui/widgets/bug_report_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,536 copying build/lib/fibsem/ui/widgets/autolamella_task_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,539 copying build/lib/fibsem/ui/widgets/custom_widgets.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,542 copying build/lib/fibsem/ui/widgets/milling_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,545 copying build/lib/fibsem/ui/widgets/lamella_pose_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,547 copying build/lib/fibsem/ui/widgets/milling_stage_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,550 copying build/lib/fibsem/ui/widgets/milling_alignment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,553 copying build/lib/fibsem/ui/widgets/dual_beam_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,556 creating build/bdist.linux-armv7l/wheel/fibsem/ui/widgets/tests 2026-07-15T07:37:26,558 copying build/lib/fibsem/ui/widgets/tests/test-lamella-workflow.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,560 copying build/lib/fibsem/ui/widgets/tests/test_radial_menu.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,563 copying build/lib/fibsem/ui/widgets/tests/test-spinner-icon.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,565 copying build/lib/fibsem/ui/widgets/tests/test_radial_ruler_demo.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,568 copying build/lib/fibsem/ui/widgets/tests/test-image-settings-widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,570 copying build/lib/fibsem/ui/widgets/tests/test_progress_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,573 copying build/lib/fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,575 copying build/lib/fibsem/ui/widgets/tests/test-icon-tool-button.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,577 copying build/lib/fibsem/ui/widgets/tests/test_lamella_default_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,579 copying build/lib/fibsem/ui/widgets/tests/test_milling_stage_list.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,582 copying build/lib/fibsem/ui/widgets/tests/test_toast.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,584 copying build/lib/fibsem/ui/widgets/tests/test-selected-lamella.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,587 copying build/lib/fibsem/ui/widgets/tests/test_hooks_manual.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,589 copying build/lib/fibsem/ui/widgets/tests/test_alignment_comparison.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,592 copying build/lib/fibsem/ui/widgets/tests/test_workflow_task_editor_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,594 copying build/lib/fibsem/ui/widgets/tests/test_splitter_layouts.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,597 copying build/lib/fibsem/ui/widgets/tests/test_saved_position_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,600 copying build/lib/fibsem/ui/widgets/tests/test_lamella_task_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,602 copying build/lib/fibsem/ui/widgets/tests/test-lamella-card.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,605 copying build/lib/fibsem/ui/widgets/tests/test_drag_distance.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,608 copying build/lib/fibsem/ui/widgets/tests/test-workflow-config.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,611 copying build/lib/fibsem/ui/widgets/tests/test_pattern_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,614 copying build/lib/fibsem/ui/widgets/tests/test_image_canvas.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,617 copying build/lib/fibsem/ui/widgets/tests/test_milling_task_config_widget2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,620 copying build/lib/fibsem/ui/widgets/tests/test-progress-bar.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,622 copying build/lib/fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,625 copying build/lib/fibsem/ui/widgets/tests/test_lamella_name_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,628 copying build/lib/fibsem/ui/widgets/tests/test_workflow_timeline_animation.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,630 copying build/lib/fibsem/ui/widgets/tests/test_countdown_progress.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,633 copying build/lib/fibsem/ui/widgets/tests/test-lamella-list.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,636 copying build/lib/fibsem/ui/widgets/tests/test_milling_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,638 copying build/lib/fibsem/ui/widgets/tests/test_milling_stages_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,641 copying build/lib/fibsem/ui/widgets/tests/test_alignment_plot_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-15T07:37:26,643 copying build/lib/fibsem/ui/widgets/lamella_card_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,646 copying build/lib/fibsem/ui/widgets/radial_menu.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,649 copying build/lib/fibsem/ui/widgets/milling_task_acquisition_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,651 copying build/lib/fibsem/ui/widgets/image_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,654 copying build/lib/fibsem/ui/widgets/autolamella_load_task_protocol_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,657 copying build/lib/fibsem/ui/widgets/drag_distance.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,660 copying build/lib/fibsem/ui/widgets/saved_position_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,662 copying build/lib/fibsem/ui/widgets/contrast_gamma_control.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,664 copying build/lib/fibsem/ui/widgets/workflow_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,667 copying build/lib/fibsem/ui/widgets/workflow_task_editor_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,669 copying build/lib/fibsem/ui/widgets/lamella_default_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,672 copying build/lib/fibsem/ui/widgets/preferences_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,675 copying build/lib/fibsem/ui/widgets/milling_task_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,677 copying build/lib/fibsem/ui/widgets/fluorescence_control_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,680 copying build/lib/fibsem/ui/widgets/autolamella_task_config_editor.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,683 copying build/lib/fibsem/ui/widgets/autolamella_create_experiment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,686 copying build/lib/fibsem/ui/widgets/fluorescence_coincidence_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,689 copying build/lib/fibsem/ui/widgets/pattern_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,692 copying build/lib/fibsem/ui/widgets/hud_ticker.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,695 copying build/lib/fibsem/ui/widgets/autolamella_spot_burn_coordinates_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,697 copying build/lib/fibsem/ui/widgets/image_annotation_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,700 copying build/lib/fibsem/ui/widgets/workflow_summary_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,702 copying build/lib/fibsem/ui/widgets/milling_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,705 copying build/lib/fibsem/ui/widgets/workflow_info_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,707 copying build/lib/fibsem/ui/widgets/lamella_task_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,710 copying build/lib/fibsem/ui/widgets/autolamella_generate_report_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,712 copying build/lib/fibsem/ui/widgets/autolamella_apply_protocol_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,715 copying build/lib/fibsem/ui/widgets/zoom_loupe.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,717 copying build/lib/fibsem/ui/widgets/dataframe_table_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,719 copying build/lib/fibsem/ui/widgets/beam_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,722 copying build/lib/fibsem/ui/widgets/notifications.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,724 copying build/lib/fibsem/ui/widgets/sample_holder_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,727 copying build/lib/fibsem/ui/widgets/task_history_table_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,729 copying build/lib/fibsem/ui/widgets/profile_line.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,732 copying build/lib/fibsem/ui/widgets/angle_measure.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,734 copying build/lib/fibsem/ui/widgets/autolamella_protocol_information_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,736 copying build/lib/fibsem/ui/widgets/lamella_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,739 copying build/lib/fibsem/ui/widgets/reference_image_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,742 copying build/lib/fibsem/ui/widgets/microscope_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,744 copying build/lib/fibsem/ui/widgets/fluorescence_coincidence_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,747 copying build/lib/fibsem/ui/widgets/fibsem_image_flow_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,750 copying build/lib/fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,753 copying build/lib/fibsem/ui/widgets/autolamella_load_experiment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,756 copying build/lib/fibsem/ui/widgets/overview_acquisition_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,759 copying build/lib/fibsem/ui/widgets/autolamella_global_task_editor_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,761 copying build/lib/fibsem/ui/widgets/tiled_overview_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,764 copying build/lib/fibsem/ui/widgets/milling_task_config_widget2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,766 copying build/lib/fibsem/ui/widgets/milling_stages_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,769 copying build/lib/fibsem/ui/widgets/autolamella_overview_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,771 copying build/lib/fibsem/ui/widgets/selected_lamella_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-15T07:37:26,774 copying build/lib/fibsem/ui/FMAcquisitionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,778 creating build/bdist.linux-armv7l/wheel/fibsem/ui/napari 2026-07-15T07:37:26,779 copying build/lib/fibsem/ui/napari/properties.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-07-15T07:37:26,781 copying build/lib/fibsem/ui/napari/utilities.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-07-15T07:37:26,784 copying build/lib/fibsem/ui/napari/patterns.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-07-15T07:37:26,787 copying build/lib/fibsem/ui/FibsemImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,790 copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,792 copying build/lib/fibsem/ui/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,795 copying build/lib/fibsem/ui/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,798 copying build/lib/fibsem/ui/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,801 copying build/lib/fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,804 copying build/lib/fibsem/ui/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-15T07:37:26,808 creating build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,809 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,812 copying build/lib/fibsem/ui/qtdesigner_files/image_viewer.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,815 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,817 copying build/lib/fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,820 copying build/lib/fibsem/ui/qtdesigner_files/FibsemUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,823 copying build/lib/fibsem/ui/qtdesigner_files/FibsemSpotBurnWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,825 copying build/lib/fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,828 copying build/lib/fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,830 copying build/lib/fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,833 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,835 copying build/lib/fibsem/ui/qtdesigner_files/detection_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,838 copying build/lib/fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,842 copying build/lib/fibsem/ui/qtdesigner_files/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-15T07:37:26,845 copying build/lib/fibsem/constants.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:26,848 creating build/bdist.linux-armv7l/wheel/fibsem/fm 2026-07-15T07:37:26,849 copying build/lib/fibsem/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-15T07:37:26,852 copying build/lib/fibsem/fm/microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-15T07:37:26,856 creating build/bdist.linux-armv7l/wheel/fibsem/fm/calibration 2026-07-15T07:37:26,857 copying build/lib/fibsem/fm/calibration/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm/calibration 2026-07-15T07:37:26,860 copying build/lib/fibsem/fm/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-15T07:37:26,864 copying build/lib/fibsem/fm/timing.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-15T07:37:26,868 copying build/lib/fibsem/fm/plotting.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-15T07:37:26,871 copying build/lib/fibsem/fm/acquisition.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-15T07:37:26,875 copying build/lib/fibsem/fm/fm-example-notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-15T07:37:26,878 copying build/lib/fibsem/fm/plot_autofocus_demo.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-15T07:37:26,880 copying build/lib/fibsem/fm/autoscript.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-15T07:37:26,883 copying build/lib/fibsem/fm/fm-notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-15T07:37:26,887 copying build/lib/fibsem/fm/odemis.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-15T07:37:26,890 copying build/lib/fibsem/cli.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:26,893 copying build/lib/fibsem/validation.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:26,897 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation 2026-07-15T07:37:26,898 copying build/lib/fibsem/segmentation/huggingface.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:26,901 copying build/lib/fibsem/segmentation/inference.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:26,904 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs 2026-07-15T07:37:26,906 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs 2026-07-15T07:37:26,909 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/labelled 2026-07-15T07:37:26,910 copying build/lib/fibsem/segmentation/docs/imgs/labelled/label.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/labelled 2026-07-15T07:37:26,943 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/combined 2026-07-15T07:37:26,944 copying build/lib/fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/combined 2026-07-15T07:37:26,967 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/raw 2026-07-15T07:37:26,968 copying build/lib/fibsem/segmentation/docs/imgs/raw/image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/raw 2026-07-15T07:37:26,995 copying build/lib/fibsem/segmentation/docs/example_napari.png -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs 2026-07-15T07:37:27,039 copying build/lib/fibsem/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,041 copying build/lib/fibsem/segmentation/adaptive_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,043 copying build/lib/fibsem/segmentation/_nnunet.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,046 copying build/lib/fibsem/segmentation/config-autolamella-waffle4.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,048 copying build/lib/fibsem/segmentation/config-autolamella-mega-v5.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,050 copying build/lib/fibsem/segmentation/onnx_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,052 copying build/lib/fibsem/segmentation/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,054 copying build/lib/fibsem/segmentation/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,056 copying build/lib/fibsem/segmentation/requirements.txt -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,058 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,060 copying build/lib/fibsem/segmentation/nnunet_model_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,063 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,064 copying build/lib/fibsem/segmentation/model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,067 copying build/lib/fibsem/segmentation/segmentation_config.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,069 copying build/lib/fibsem/segmentation/nnunet_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,071 copying build/lib/fibsem/segmentation/config.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,073 copying build/lib/fibsem/segmentation/augmentation.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,075 copying build/lib/fibsem/segmentation/train.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,078 copying build/lib/fibsem/segmentation/test_image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,103 copying build/lib/fibsem/segmentation/sam_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,106 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/models 2026-07-15T07:37:27,107 copying build/lib/fibsem/segmentation/models/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/models 2026-07-15T07:37:27,108 copying build/lib/fibsem/segmentation/hf_segmentation_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,111 copying build/lib/fibsem/segmentation/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,114 copying build/lib/fibsem/segmentation/example.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,118 copying build/lib/fibsem/segmentation/dataset.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-15T07:37:27,121 creating build/bdist.linux-armv7l/wheel/fibsem/imaging 2026-07-15T07:37:27,123 copying build/lib/fibsem/imaging/transforms.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-15T07:37:27,125 copying build/lib/fibsem/imaging/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-15T07:37:27,128 copying build/lib/fibsem/imaging/tiled.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-15T07:37:27,131 creating build/bdist.linux-armv7l/wheel/fibsem/imaging/tests 2026-07-15T07:37:27,133 copying build/lib/fibsem/imaging/tests/test_drawing_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging/tests 2026-07-15T07:37:27,135 copying build/lib/fibsem/imaging/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging/tests 2026-07-15T07:37:27,137 copying build/lib/fibsem/imaging/tests/test_tile_order_strategies.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging/tests 2026-07-15T07:37:27,140 copying build/lib/fibsem/imaging/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-15T07:37:27,142 copying build/lib/fibsem/imaging/masks.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-15T07:37:27,145 copying build/lib/fibsem/imaging/spot.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-15T07:37:27,147 copying build/lib/fibsem/imaging/drawing.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-15T07:37:27,150 copying build/lib/fibsem/imaging/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-15T07:37:27,153 creating build/bdist.linux-armv7l/wheel/fibsem/applications 2026-07-15T07:37:27,155 copying build/lib/fibsem/applications/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications 2026-07-15T07:37:27,157 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella 2026-07-15T07:37:27,159 copying build/lib/fibsem/applications/autolamella/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-07-15T07:37:27,161 copying build/lib/fibsem/applications/autolamella/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-07-15T07:37:27,164 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows 2026-07-15T07:37:27,166 copying build/lib/fibsem/applications/autolamella/workflows/ui.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-07-15T07:37:27,169 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows/legacy 2026-07-15T07:37:27,170 copying build/lib/fibsem/applications/autolamella/workflows/legacy/experimental.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-07-15T07:37:27,173 copying build/lib/fibsem/applications/autolamella/workflows/legacy/serial.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-07-15T07:37:27,177 copying build/lib/fibsem/applications/autolamella/workflows/legacy/autoliftout.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-07-15T07:37:27,180 copying build/lib/fibsem/applications/autolamella/workflows/_default_milling_config.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-07-15T07:37:27,183 copying build/lib/fibsem/applications/autolamella/workflows/core.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-07-15T07:37:27,186 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,187 copying build/lib/fibsem/applications/autolamella/workflows/tasks/acquire_fluorescence.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,190 copying build/lib/fibsem/applications/autolamella/workflows/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,193 copying build/lib/fibsem/applications/autolamella/workflows/tasks/reference_image.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,196 copying build/lib/fibsem/applications/autolamella/workflows/tasks/basic_milling.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,198 copying build/lib/fibsem/applications/autolamella/workflows/tasks/trench.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,200 copying build/lib/fibsem/applications/autolamella/workflows/tasks/spot_burn.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,203 copying build/lib/fibsem/applications/autolamella/workflows/tasks/manager.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,206 copying build/lib/fibsem/applications/autolamella/workflows/tasks/mill_coincident.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,208 copying build/lib/fibsem/applications/autolamella/workflows/tasks/grid-task-notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,211 copying build/lib/fibsem/applications/autolamella/workflows/tasks/select_position.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,213 copying build/lib/fibsem/applications/autolamella/workflows/tasks/polishing.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,215 copying build/lib/fibsem/applications/autolamella/workflows/tasks/fiducial.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,218 copying build/lib/fibsem/applications/autolamella/workflows/tasks/rough.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,220 copying build/lib/fibsem/applications/autolamella/workflows/tasks/tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,222 copying build/lib/fibsem/applications/autolamella/workflows/tasks/select_fluorescence_position.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,224 copying build/lib/fibsem/applications/autolamella/workflows/tasks/queue.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,227 copying build/lib/fibsem/applications/autolamella/workflows/tasks/undercut.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,229 copying build/lib/fibsem/applications/autolamella/workflows/tasks/hooks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,232 copying build/lib/fibsem/applications/autolamella/workflows/tasks/grid_tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,235 copying build/lib/fibsem/applications/autolamella/workflows/tasks/test_hooks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,237 copying build/lib/fibsem/applications/autolamella/workflows/tasks/base.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-15T07:37:27,240 copying build/lib/fibsem/applications/autolamella/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-07-15T07:37:27,244 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/ui 2026-07-15T07:37:27,245 copying build/lib/fibsem/applications/autolamella/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-07-15T07:37:27,248 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/ui/tests 2026-07-15T07:37:27,249 copying build/lib/fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui/tests 2026-07-15T07:37:27,252 copying build/lib/fibsem/applications/autolamella/ui/autolamella_fluorescence_acquisition_task_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-07-15T07:37:27,254 copying build/lib/fibsem/applications/autolamella/ui/run_ui.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-07-15T07:37:27,256 copying build/lib/fibsem/applications/autolamella/ui/AutoLamellaMainUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-07-15T07:37:27,260 copying build/lib/fibsem/applications/autolamella/ui/AutoLamellaUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-07-15T07:37:27,265 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/compat 2026-07-15T07:37:27,266 copying build/lib/fibsem/applications/autolamella/compat/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/compat 2026-07-15T07:37:27,269 copying build/lib/fibsem/applications/autolamella/compat/odemis.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/compat 2026-07-15T07:37:27,273 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/tools 2026-07-15T07:37:27,274 copying build/lib/fibsem/applications/autolamella/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-15T07:37:27,276 copying build/lib/fibsem/applications/autolamella/tools/review.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-15T07:37:27,278 copying build/lib/fibsem/applications/autolamella/tools/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-15T07:37:27,281 copying build/lib/fibsem/applications/autolamella/tools/reporting.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-15T07:37:27,284 copying build/lib/fibsem/applications/autolamella/tools/data.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-15T07:37:27,287 copying build/lib/fibsem/applications/autolamella/tools/bug_report.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-15T07:37:27,290 copying build/lib/fibsem/applications/autolamella/tools/stats.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-15T07:37:27,293 copying build/lib/fibsem/applications/autolamella/tools/upload_to_hf.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-15T07:37:27,296 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/protocol 2026-07-15T07:37:27,298 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/protocol/development 2026-07-15T07:37:27,300 copying build/lib/fibsem/applications/autolamella/protocol/development/task-protocol-coincidence.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/development 2026-07-15T07:37:27,303 copying build/lib/fibsem/applications/autolamella/protocol/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-15T07:37:27,305 copying build/lib/fibsem/applications/autolamella/protocol/task-protocol.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-15T07:37:27,307 copying build/lib/fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-15T07:37:27,310 copying build/lib/fibsem/applications/autolamella/protocol/legacy.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-15T07:37:27,312 copying build/lib/fibsem/applications/autolamella/protocol/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-15T07:37:27,314 copying build/lib/fibsem/applications/autolamella/protocol/constants.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-15T07:37:27,316 copying build/lib/fibsem/applications/autolamella/protocol/validation.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-15T07:37:27,319 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:27,321 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:27,323 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:27,326 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:27,329 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:27,331 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-07-15T07:37:27,333 copying build/lib/fibsem/applications/autolamella/task_manager_queue.md -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-07-15T07:37:27,336 copying build/lib/fibsem/movement.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:27,339 creating build/bdist.linux-armv7l/wheel/fibsem/tools 2026-07-15T07:37:27,340 copying build/lib/fibsem/tools/_streamlit.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-15T07:37:27,343 copying build/lib/fibsem/tools/run_manipulator_calibration.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-15T07:37:27,345 copying build/lib/fibsem/tools/telemetry.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-15T07:37:27,348 copying build/lib/fibsem/tools/_parser.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-15T07:37:27,350 copying build/lib/fibsem/tools/beam_shift_alignment_test.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-15T07:37:27,353 copying build/lib/fibsem/tools/run_split_dataset.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-15T07:37:27,356 creating build/bdist.linux-armv7l/wheel/fibsem/detection 2026-07-15T07:37:27,357 copying build/lib/fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,359 copying build/lib/fibsem/detection/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,361 copying build/lib/fibsem/detection/config-autoliftout-dm-embryo.yml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,363 copying build/lib/fibsem/detection/config-autolamella-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,365 copying build/lib/fibsem/detection/run_evaluation.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,368 copying build/lib/fibsem/detection/config-autolamella-waffle.yml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,370 copying build/lib/fibsem/detection/test_image_2.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,395 copying build/lib/fibsem/detection/evaluation.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,398 copying build/lib/fibsem/detection/test_image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,425 copying build/lib/fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,427 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2026-07-15T07:37:27,428 copying build/lib/fibsem/detection/test_images/test_needle_mask2.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-07-15T07:37:27,431 copying build/lib/fibsem/detection/test_images/test_needle_mask3.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-07-15T07:37:27,433 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2026-07-15T07:37:27,434 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-15T07:37:27,437 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-15T07:37:27,440 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-15T07:37:27,442 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-15T07:37:27,445 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-15T07:37:27,447 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-15T07:37:27,450 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-15T07:37:27,453 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-15T07:37:27,455 copying build/lib/fibsem/detection/test_images/test_needle_mask.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-07-15T07:37:27,457 copying build/lib/fibsem/detection/config-autolamella-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,459 copying build/lib/fibsem/detection/detection.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,462 copying build/lib/fibsem/detection/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,465 copying build/lib/fibsem/detection/config-autolamella-liftout-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,466 copying build/lib/fibsem/detection/config-autolamella-waffle-v2.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-15T07:37:27,469 creating build/bdist.linux-armv7l/wheel/fibsem/milling 2026-07-15T07:37:27,470 copying build/lib/fibsem/milling/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-15T07:37:27,473 creating build/bdist.linux-armv7l/wheel/fibsem/milling/strategy 2026-07-15T07:37:27,474 copying build/lib/fibsem/milling/strategy/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-07-15T07:37:27,476 copying build/lib/fibsem/milling/strategy/coincidence.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-07-15T07:37:27,478 copying build/lib/fibsem/milling/strategy/standard.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-07-15T07:37:27,480 copying build/lib/fibsem/milling/strategy/overtilt.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-07-15T07:37:27,483 copying build/lib/fibsem/milling/properties.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-15T07:37:27,485 creating build/bdist.linux-armv7l/wheel/fibsem/milling/patterning 2026-07-15T07:37:27,486 copying build/lib/fibsem/milling/patterning/patterns2.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-07-15T07:37:27,490 copying build/lib/fibsem/milling/patterning/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-07-15T07:37:27,493 copying build/lib/fibsem/milling/patterning/plotting.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-07-15T07:37:27,496 copying build/lib/fibsem/milling/patterning/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-07-15T07:37:27,499 copying build/lib/fibsem/milling/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-15T07:37:27,501 copying build/lib/fibsem/milling/tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-15T07:37:27,504 copying build/lib/fibsem/milling/core.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-15T07:37:27,506 copying build/lib/fibsem/milling/base.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-15T07:37:27,509 copying build/lib/fibsem/conversions.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:27,511 copying build/lib/fibsem/calibration.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:27,514 creating build/bdist.linux-armv7l/wheel/fibsem/microscopes 2026-07-15T07:37:27,516 copying build/lib/fibsem/microscopes/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-15T07:37:27,519 copying build/lib/fibsem/microscopes/tescan.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-15T07:37:27,523 copying build/lib/fibsem/microscopes/simulator.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-15T07:37:27,526 copying build/lib/fibsem/microscopes/odemis_microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-15T07:37:27,530 copying build/lib/fibsem/microscopes/autoscript.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-15T07:37:27,532 copying build/lib/fibsem/microscopes/_stage.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-15T07:37:27,535 copying build/lib/fibsem/microscopes/zeiss.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-15T07:37:27,537 copying build/lib/fibsem/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:27,541 creating build/bdist.linux-armv7l/wheel/fibsem/config 2026-07-15T07:37:27,542 copying build/lib/fibsem/config/default-sample-holder.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-15T07:37:27,544 copying build/lib/fibsem/config/sim-arctis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-15T07:37:27,546 copying build/lib/fibsem/config/tescan-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-15T07:37:27,548 copying build/lib/fibsem/config/tescan_manipulator.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-15T07:37:27,551 creating build/bdist.linux-armv7l/wheel/fibsem/config/fm 2026-07-15T07:37:27,552 copying build/lib/fibsem/config/fm/fm-configuration-default.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config/fm 2026-07-15T07:37:27,554 copying build/lib/fibsem/config/sample-holder.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-15T07:37:27,555 copying build/lib/fibsem/config/microscope-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-15T07:37:27,558 copying build/lib/fibsem/config/tfs-hydra-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-15T07:37:27,560 copying build/lib/fibsem/config/tfs-arctis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-15T07:37:27,562 copying build/lib/fibsem/config/tfs-aquilos2-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-15T07:37:27,565 copying build/lib/fibsem/config/odemis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-15T07:37:27,567 copying build/lib/fibsem/configuration.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:27,569 copying build/lib/fibsem/acquire.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:27,572 copying build/lib/fibsem/logo.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-15T07:37:27,573 running install_egg_info 2026-07-15T07:37:27,580 Copying fibsem.egg-info to build/bdist.linux-armv7l/wheel/./fibsem-0.5.1.dev0-py3.11.egg-info 2026-07-15T07:37:27,595 running install_scripts 2026-07-15T07:37:27,608 creating build/bdist.linux-armv7l/wheel/fibsem-0.5.1.dev0.dist-info/WHEEL 2026-07-15T07:37:27,611 creating '/tmp/pip-wheel-bn5xkehc/.tmp-h7292vgn/fibsem-0.5.1.dev0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-07-15T07:37:27,614 adding 'fibsem/__init__.py' 2026-07-15T07:37:27,616 adding 'fibsem/acquire.py' 2026-07-15T07:37:27,618 adding 'fibsem/calibration.py' 2026-07-15T07:37:27,620 adding 'fibsem/cli.py' 2026-07-15T07:37:27,623 adding 'fibsem/config.py' 2026-07-15T07:37:27,625 adding 'fibsem/configuration.py' 2026-07-15T07:37:27,626 adding 'fibsem/constants.py' 2026-07-15T07:37:27,628 adding 'fibsem/conversions.py' 2026-07-15T07:37:27,630 adding 'fibsem/gis.py' 2026-07-15T07:37:27,632 adding 'fibsem/logo.py' 2026-07-15T07:37:27,649 adding 'fibsem/microscope.py' 2026-07-15T07:37:27,652 adding 'fibsem/movement.py' 2026-07-15T07:37:27,663 adding 'fibsem/structures.py' 2026-07-15T07:37:27,665 adding 'fibsem/transformations.py' 2026-07-15T07:37:27,668 adding 'fibsem/utils.py' 2026-07-15T07:37:27,670 adding 'fibsem/validation.py' 2026-07-15T07:37:27,673 adding 'fibsem/alignment/__init__.py' 2026-07-15T07:37:27,676 adding 'fibsem/alignment/methods.py' 2026-07-15T07:37:27,678 adding 'fibsem/alignment/plotting.py' 2026-07-15T07:37:27,680 adding 'fibsem/applications/__init__.py' 2026-07-15T07:37:27,682 adding 'fibsem/applications/autolamella/__init__.py' 2026-07-15T07:37:27,683 adding 'fibsem/applications/autolamella/config.py' 2026-07-15T07:37:27,689 adding 'fibsem/applications/autolamella/structures.py' 2026-07-15T07:37:27,692 adding 'fibsem/applications/autolamella/task_manager_queue.md' 2026-07-15T07:37:27,694 adding 'fibsem/applications/autolamella/compat/notebook.ipynb' 2026-07-15T07:37:27,696 adding 'fibsem/applications/autolamella/compat/odemis.py' 2026-07-15T07:37:27,698 adding 'fibsem/applications/autolamella/protocol/.gitkeep' 2026-07-15T07:37:27,699 adding 'fibsem/applications/autolamella/protocol/__init__.py' 2026-07-15T07:37:27,700 adding 'fibsem/applications/autolamella/protocol/constants.py' 2026-07-15T07:37:27,702 adding 'fibsem/applications/autolamella/protocol/legacy.py' 2026-07-15T07:37:27,704 adding 'fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml' 2026-07-15T07:37:27,705 adding 'fibsem/applications/autolamella/protocol/task-protocol.yaml' 2026-07-15T07:37:27,707 adding 'fibsem/applications/autolamella/protocol/validation.py' 2026-07-15T07:37:27,709 adding 'fibsem/applications/autolamella/protocol/development/task-protocol-coincidence.yaml' 2026-07-15T07:37:27,711 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml' 2026-07-15T07:37:27,713 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml' 2026-07-15T07:37:27,714 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml' 2026-07-15T07:37:27,716 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml' 2026-07-15T07:37:27,717 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml' 2026-07-15T07:37:27,719 adding 'fibsem/applications/autolamella/tools/__init__.py' 2026-07-15T07:37:27,721 adding 'fibsem/applications/autolamella/tools/bug_report.py' 2026-07-15T07:37:27,724 adding 'fibsem/applications/autolamella/tools/data.py' 2026-07-15T07:37:27,726 adding 'fibsem/applications/autolamella/tools/notebook.ipynb' 2026-07-15T07:37:27,729 adding 'fibsem/applications/autolamella/tools/reporting.py' 2026-07-15T07:37:27,731 adding 'fibsem/applications/autolamella/tools/review.py' 2026-07-15T07:37:27,734 adding 'fibsem/applications/autolamella/tools/stats.py' 2026-07-15T07:37:27,735 adding 'fibsem/applications/autolamella/tools/upload_to_hf.py' 2026-07-15T07:37:27,743 adding 'fibsem/applications/autolamella/ui/AutoLamellaMainUI.py' 2026-07-15T07:37:27,752 adding 'fibsem/applications/autolamella/ui/AutoLamellaUI.py' 2026-07-15T07:37:27,753 adding 'fibsem/applications/autolamella/ui/__init__.py' 2026-07-15T07:37:27,755 adding 'fibsem/applications/autolamella/ui/autolamella_fluorescence_acquisition_task_config_widget.py' 2026-07-15T07:37:27,756 adding 'fibsem/applications/autolamella/ui/run_ui.py' 2026-07-15T07:37:27,758 adding 'fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py' 2026-07-15T07:37:27,760 adding 'fibsem/applications/autolamella/workflows/_default_milling_config.py' 2026-07-15T07:37:27,762 adding 'fibsem/applications/autolamella/workflows/core.py' 2026-07-15T07:37:27,763 adding 'fibsem/applications/autolamella/workflows/ui.py' 2026-07-15T07:37:27,770 adding 'fibsem/applications/autolamella/workflows/legacy/autoliftout.py' 2026-07-15T07:37:27,771 adding 'fibsem/applications/autolamella/workflows/legacy/experimental.py' 2026-07-15T07:37:27,776 adding 'fibsem/applications/autolamella/workflows/legacy/serial.py' 2026-07-15T07:37:27,778 adding 'fibsem/applications/autolamella/workflows/tasks/__init__.py' 2026-07-15T07:37:27,780 adding 'fibsem/applications/autolamella/workflows/tasks/acquire_fluorescence.py' 2026-07-15T07:37:27,783 adding 'fibsem/applications/autolamella/workflows/tasks/base.py' 2026-07-15T07:37:27,785 adding 'fibsem/applications/autolamella/workflows/tasks/basic_milling.py' 2026-07-15T07:37:27,786 adding 'fibsem/applications/autolamella/workflows/tasks/fiducial.py' 2026-07-15T07:37:27,788 adding 'fibsem/applications/autolamella/workflows/tasks/grid-task-notebook.ipynb' 2026-07-15T07:37:27,790 adding 'fibsem/applications/autolamella/workflows/tasks/grid_tasks.py' 2026-07-15T07:37:27,792 adding 'fibsem/applications/autolamella/workflows/tasks/hooks.py' 2026-07-15T07:37:27,794 adding 'fibsem/applications/autolamella/workflows/tasks/manager.py' 2026-07-15T07:37:27,796 adding 'fibsem/applications/autolamella/workflows/tasks/mill_coincident.py' 2026-07-15T07:37:27,797 adding 'fibsem/applications/autolamella/workflows/tasks/polishing.py' 2026-07-15T07:37:27,799 adding 'fibsem/applications/autolamella/workflows/tasks/queue.py' 2026-07-15T07:37:27,800 adding 'fibsem/applications/autolamella/workflows/tasks/reference_image.py' 2026-07-15T07:37:27,802 adding 'fibsem/applications/autolamella/workflows/tasks/rough.py' 2026-07-15T07:37:27,804 adding 'fibsem/applications/autolamella/workflows/tasks/select_fluorescence_position.py' 2026-07-15T07:37:27,805 adding 'fibsem/applications/autolamella/workflows/tasks/select_position.py' 2026-07-15T07:37:27,807 adding 'fibsem/applications/autolamella/workflows/tasks/spot_burn.py' 2026-07-15T07:37:27,808 adding 'fibsem/applications/autolamella/workflows/tasks/tasks.py' 2026-07-15T07:37:27,810 adding 'fibsem/applications/autolamella/workflows/tasks/test_hooks.py' 2026-07-15T07:37:27,812 adding 'fibsem/applications/autolamella/workflows/tasks/trench.py' 2026-07-15T07:37:27,813 adding 'fibsem/applications/autolamella/workflows/tasks/undercut.py' 2026-07-15T07:37:27,815 adding 'fibsem/autofunctions/__init__.py' 2026-07-15T07:37:27,817 adding 'fibsem/autofunctions/acb.py' 2026-07-15T07:37:27,820 adding 'fibsem/autofunctions/autofocus.py' 2026-07-15T07:37:27,821 adding 'fibsem/autofunctions/charge_neutralisation.py' 2026-07-15T07:37:27,823 adding 'fibsem/autofunctions/gamma.py' 2026-07-15T07:37:27,825 adding 'fibsem/autofunctions/integration.py' 2026-07-15T07:37:27,826 adding 'fibsem/autofunctions/metrics.py' 2026-07-15T07:37:27,828 adding 'fibsem/autofunctions/plotting.py' 2026-07-15T07:37:27,830 adding 'fibsem/autofunctions/stacking.py' 2026-07-15T07:37:27,832 adding 'fibsem/chat/.gitignore' 2026-07-15T07:37:27,833 adding 'fibsem/chat/main.py' 2026-07-15T07:37:27,834 adding 'fibsem/chat/requirements.txt' 2026-07-15T07:37:27,836 adding 'fibsem/config/default-sample-holder.yaml' 2026-07-15T07:37:27,838 adding 'fibsem/config/microscope-configuration.yaml' 2026-07-15T07:37:27,839 adding 'fibsem/config/odemis-configuration.yaml' 2026-07-15T07:37:27,841 adding 'fibsem/config/sample-holder.yaml' 2026-07-15T07:37:27,842 adding 'fibsem/config/sim-arctis-configuration.yaml' 2026-07-15T07:37:27,844 adding 'fibsem/config/tescan-configuration.yaml' 2026-07-15T07:37:27,845 adding 'fibsem/config/tescan_manipulator.yaml' 2026-07-15T07:37:27,846 adding 'fibsem/config/tfs-aquilos2-configuration.yaml' 2026-07-15T07:37:27,848 adding 'fibsem/config/tfs-arctis-configuration.yaml' 2026-07-15T07:37:27,850 adding 'fibsem/config/tfs-hydra-configuration.yaml' 2026-07-15T07:37:27,851 adding 'fibsem/config/fm/fm-configuration-default.yaml' 2026-07-15T07:37:27,853 adding 'fibsem/correlation/README.md' 2026-07-15T07:37:27,854 adding 'fibsem/correlation/__init__.py' 2026-07-15T07:37:27,857 adding 'fibsem/correlation/correlation_v2.py' 2026-07-15T07:37:27,859 adding 'fibsem/correlation/io.py' 2026-07-15T07:37:27,861 adding 'fibsem/correlation/refractive_index.py' 2026-07-15T07:37:27,863 adding 'fibsem/correlation/structures.py' 2026-07-15T07:37:27,865 adding 'fibsem/correlation/test_correlation_v2.py' 2026-07-15T07:37:27,868 adding 'fibsem/correlation/util.py' 2026-07-15T07:37:27,870 adding 'fibsem/correlation/pyto/__init__.py' 2026-07-15T07:37:27,875 adding 'fibsem/correlation/pyto/affine.py' 2026-07-15T07:37:27,878 adding 'fibsem/correlation/pyto/affine_2d.py' 2026-07-15T07:37:27,880 adding 'fibsem/correlation/pyto/attributes.py' 2026-07-15T07:37:27,883 adding 'fibsem/correlation/pyto/common.py' 2026-07-15T07:37:27,884 adding 'fibsem/correlation/pyto/points.py' 2026-07-15T07:37:27,890 adding 'fibsem/correlation/pyto/rigid_3d.py' 2026-07-15T07:37:27,892 adding 'fibsem/correlation/pyto/util.py' 2026-07-15T07:37:27,894 adding 'fibsem/correlation/pyto/test/test_affine.py' 2026-07-15T07:37:27,897 adding 'fibsem/correlation/pyto/test/test_affine_2d.py' 2026-07-15T07:37:27,901 adding 'fibsem/correlation/pyto/test/test_rigid_3d.py' 2026-07-15T07:37:27,903 adding 'fibsem/correlation/tests/__init__.py' 2026-07-15T07:37:27,904 adding 'fibsem/correlation/tests/eval_lut_precision.py' 2026-07-15T07:37:27,906 adding 'fibsem/correlation/tests/test_structures.py' 2026-07-15T07:37:27,907 adding 'fibsem/correlation/ui/__init__.py' 2026-07-15T07:37:27,909 adding 'fibsem/correlation/ui/widgets/__init__.py' 2026-07-15T07:37:27,911 adding 'fibsem/correlation/ui/widgets/coordinate_list_widget.py' 2026-07-15T07:37:27,913 adding 'fibsem/correlation/ui/widgets/correlation_input_data_widget.py' 2026-07-15T07:37:27,916 adding 'fibsem/correlation/ui/widgets/correlation_point_picker_widget.py' 2026-07-15T07:37:27,918 adding 'fibsem/correlation/ui/widgets/correlation_result_widget.py' 2026-07-15T07:37:27,924 adding 'fibsem/correlation/ui/widgets/correlation_tab_widget.py' 2026-07-15T07:37:27,926 adding 'fibsem/correlation/ui/widgets/fm_image_display_widget.py' 2026-07-15T07:37:27,929 adding 'fibsem/correlation/ui/widgets/image_point_canvas.py' 2026-07-15T07:37:27,931 adding 'fibsem/correlation/ui/widgets/refractive_index_widget.py' 2026-07-15T07:37:27,932 adding 'fibsem/correlation/ui/widgets/test_correlation_point_picker_widget.py' 2026-07-15T07:37:27,934 adding 'fibsem/correlation/ui/widgets/test_correlation_tab_widget.py' 2026-07-15T07:37:27,935 adding 'fibsem/correlation/ui/widgets/test_fm_image_display_widget.py' 2026-07-15T07:37:27,937 adding 'fibsem/correlation/ui/widgets/test_image_point_canvas.py' 2026-07-15T07:37:27,939 adding 'fibsem/detection/__init__.py' 2026-07-15T07:37:27,940 adding 'fibsem/detection/config-autolamella-liftout-hf-mega.yaml' 2026-07-15T07:37:27,941 adding 'fibsem/detection/config-autolamella-liftout.yaml' 2026-07-15T07:37:27,943 adding 'fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml' 2026-07-15T07:37:27,944 adding 'fibsem/detection/config-autolamella-serial-liftout.yaml' 2026-07-15T07:37:27,945 adding 'fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml' 2026-07-15T07:37:27,946 adding 'fibsem/detection/config-autolamella-waffle-v2.yaml' 2026-07-15T07:37:27,948 adding 'fibsem/detection/config-autolamella-waffle.yml' 2026-07-15T07:37:27,949 adding 'fibsem/detection/config-autoliftout-dm-embryo.yml' 2026-07-15T07:37:27,955 adding 'fibsem/detection/detection.py' 2026-07-15T07:37:27,957 adding 'fibsem/detection/evaluation.py' 2026-07-15T07:37:27,959 adding 'fibsem/detection/run_evaluation.py' 2026-07-15T07:37:28,384 adding 'fibsem/detection/test_image.tif' 2026-07-15T07:37:28,683 adding 'fibsem/detection/test_image_2.tif' 2026-07-15T07:37:28,694 adding 'fibsem/detection/utils.py' 2026-07-15T07:37:28,697 adding 'fibsem/detection/test_images/test_needle_mask.tif' 2026-07-15T07:37:28,698 adding 'fibsem/detection/test_images/test_needle_mask2.tif' 2026-07-15T07:37:28,700 adding 'fibsem/detection/test_images/test_needle_mask3.tif' 2026-07-15T07:37:28,703 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_00.tif' 2026-07-15T07:37:28,706 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_01.tif' 2026-07-15T07:37:28,709 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_02.tif' 2026-07-15T07:37:28,711 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_03.tif' 2026-07-15T07:37:28,713 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_04.tif' 2026-07-15T07:37:28,715 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_05.tif' 2026-07-15T07:37:28,718 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_06.tif' 2026-07-15T07:37:28,720 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_07.tif' 2026-07-15T07:37:28,723 adding 'fibsem/fm/__init__.py' 2026-07-15T07:37:28,729 adding 'fibsem/fm/acquisition.py' 2026-07-15T07:37:28,732 adding 'fibsem/fm/autoscript.py' 2026-07-15T07:37:28,735 adding 'fibsem/fm/fm-example-notebook.ipynb' 2026-07-15T07:37:28,739 adding 'fibsem/fm/fm-notebook.ipynb' 2026-07-15T07:37:28,743 adding 'fibsem/fm/microscope.py' 2026-07-15T07:37:28,746 adding 'fibsem/fm/odemis.py' 2026-07-15T07:37:28,747 adding 'fibsem/fm/plot_autofocus_demo.py' 2026-07-15T07:37:28,750 adding 'fibsem/fm/plotting.py' 2026-07-15T07:37:28,757 adding 'fibsem/fm/structures.py' 2026-07-15T07:37:28,759 adding 'fibsem/fm/timing.py' 2026-07-15T07:37:28,762 adding 'fibsem/fm/calibration/__init__.py' 2026-07-15T07:37:28,763 adding 'fibsem/imaging/.gitkeep' 2026-07-15T07:37:28,765 adding 'fibsem/imaging/__init__.py' 2026-07-15T07:37:28,766 adding 'fibsem/imaging/drawing.py' 2026-07-15T07:37:28,768 adding 'fibsem/imaging/masks.py' 2026-07-15T07:37:28,769 adding 'fibsem/imaging/spot.py' 2026-07-15T07:37:28,775 adding 'fibsem/imaging/tiled.py' 2026-07-15T07:37:28,776 adding 'fibsem/imaging/transforms.py' 2026-07-15T07:37:28,778 adding 'fibsem/imaging/utils.py' 2026-07-15T07:37:28,779 adding 'fibsem/imaging/tests/__init__.py' 2026-07-15T07:37:28,780 adding 'fibsem/imaging/tests/test_drawing_widget.py' 2026-07-15T07:37:28,782 adding 'fibsem/imaging/tests/test_tile_order_strategies.py' 2026-07-15T07:37:28,784 adding 'fibsem/microscopes/_stage.py' 2026-07-15T07:37:28,786 adding 'fibsem/microscopes/autoscript.py' 2026-07-15T07:37:28,788 adding 'fibsem/microscopes/notebook.ipynb' 2026-07-15T07:37:28,792 adding 'fibsem/microscopes/odemis_microscope.py' 2026-07-15T07:37:28,797 adding 'fibsem/microscopes/simulator.py' 2026-07-15T07:37:28,805 adding 'fibsem/microscopes/tescan.py' 2026-07-15T07:37:28,807 adding 'fibsem/microscopes/zeiss.py' 2026-07-15T07:37:28,808 adding 'fibsem/milling/__init__.py' 2026-07-15T07:37:28,810 adding 'fibsem/milling/base.py' 2026-07-15T07:37:28,812 adding 'fibsem/milling/config.py' 2026-07-15T07:37:28,813 adding 'fibsem/milling/core.py' 2026-07-15T07:37:28,814 adding 'fibsem/milling/properties.py' 2026-07-15T07:37:28,817 adding 'fibsem/milling/tasks.py' 2026-07-15T07:37:28,819 adding 'fibsem/milling/patterning/__init__.py' 2026-07-15T07:37:28,824 adding 'fibsem/milling/patterning/patterns2.py' 2026-07-15T07:37:28,828 adding 'fibsem/milling/patterning/plotting.py' 2026-07-15T07:37:28,830 adding 'fibsem/milling/patterning/utils.py' 2026-07-15T07:37:28,832 adding 'fibsem/milling/strategy/__init__.py' 2026-07-15T07:37:28,836 adding 'fibsem/milling/strategy/coincidence.py' 2026-07-15T07:37:28,837 adding 'fibsem/milling/strategy/overtilt.py' 2026-07-15T07:37:28,839 adding 'fibsem/milling/strategy/standard.py' 2026-07-15T07:37:28,842 adding 'fibsem/segmentation/README.md' 2026-07-15T07:37:28,843 adding 'fibsem/segmentation/__init__.py' 2026-07-15T07:37:28,845 adding 'fibsem/segmentation/_nnunet.py' 2026-07-15T07:37:28,846 adding 'fibsem/segmentation/adaptive_model.py' 2026-07-15T07:37:28,848 adding 'fibsem/segmentation/augmentation.ipynb' 2026-07-15T07:37:28,849 adding 'fibsem/segmentation/config-autolamella-mega-v4-xl.yml' 2026-07-15T07:37:28,850 adding 'fibsem/segmentation/config-autolamella-mega-v4.yml' 2026-07-15T07:37:28,852 adding 'fibsem/segmentation/config-autolamella-mega-v5.yml' 2026-07-15T07:37:28,853 adding 'fibsem/segmentation/config-autolamella-waffle4.yml' 2026-07-15T07:37:28,854 adding 'fibsem/segmentation/config.py' 2026-07-15T07:37:28,856 adding 'fibsem/segmentation/config.yml' 2026-07-15T07:37:28,857 adding 'fibsem/segmentation/dataset.py' 2026-07-15T07:37:28,868 adding 'fibsem/segmentation/example.ipynb' 2026-07-15T07:37:28,870 adding 'fibsem/segmentation/hf_segmentation_model.py' 2026-07-15T07:37:28,873 adding 'fibsem/segmentation/huggingface.ipynb' 2026-07-15T07:37:28,875 adding 'fibsem/segmentation/inference.py' 2026-07-15T07:37:28,876 adding 'fibsem/segmentation/model.py' 2026-07-15T07:37:28,878 adding 'fibsem/segmentation/nnunet_model.py' 2026-07-15T07:37:28,879 adding 'fibsem/segmentation/nnunet_model_v2.py' 2026-07-15T07:37:28,882 adding 'fibsem/segmentation/onnx_model.py' 2026-07-15T07:37:28,883 adding 'fibsem/segmentation/requirements.txt' 2026-07-15T07:37:28,884 adding 'fibsem/segmentation/sam_model.py' 2026-07-15T07:37:28,886 adding 'fibsem/segmentation/segmentation_config.yaml' 2026-07-15T07:37:29,034 adding 'fibsem/segmentation/test_image.tif' 2026-07-15T07:37:29,045 adding 'fibsem/segmentation/train.py' 2026-07-15T07:37:29,047 adding 'fibsem/segmentation/utils.py' 2026-07-15T07:37:29,403 adding 'fibsem/segmentation/docs/example_napari.png' 2026-07-15T07:37:29,562 adding 'fibsem/segmentation/docs/imgs/combined/combined.jpg' 2026-07-15T07:37:29,613 adding 'fibsem/segmentation/docs/imgs/labelled/label.tif' 2026-07-15T07:37:29,778 adding 'fibsem/segmentation/docs/imgs/raw/image.tif' 2026-07-15T07:37:29,788 adding 'fibsem/segmentation/models/.gitkeep' 2026-07-15T07:37:29,790 adding 'fibsem/server/GAPS.md' 2026-07-15T07:37:29,792 adding 'fibsem/server/README.md' 2026-07-15T07:37:29,793 adding 'fibsem/server/__init__.py' 2026-07-15T07:37:29,795 adding 'fibsem/server/client.py' 2026-07-15T07:37:29,796 adding 'fibsem/server/models.py' 2026-07-15T07:37:29,798 adding 'fibsem/server/server.py' 2026-07-15T07:37:29,800 adding 'fibsem/tools/_parser.py' 2026-07-15T07:37:29,802 adding 'fibsem/tools/_streamlit.py' 2026-07-15T07:37:29,803 adding 'fibsem/tools/beam_shift_alignment_test.py' 2026-07-15T07:37:29,805 adding 'fibsem/tools/run_manipulator_calibration.py' 2026-07-15T07:37:29,806 adding 'fibsem/tools/run_split_dataset.py' 2026-07-15T07:37:29,807 adding 'fibsem/tools/telemetry.py' 2026-07-15T07:37:29,809 adding 'fibsem/ui/.gitkeep' 2026-07-15T07:37:29,818 adding 'fibsem/ui/FMAcquisitionWidget.py' 2026-07-15T07:37:29,820 adding 'fibsem/ui/FibsemCryoDepositionWidget.py' 2026-07-15T07:37:29,822 adding 'fibsem/ui/FibsemCryoDepositionWidget_qt.py' 2026-07-15T07:37:29,824 adding 'fibsem/ui/FibsemEmbeddedDetectionWidget.py' 2026-07-15T07:37:29,826 adding 'fibsem/ui/FibsemFeatureLabellingUI.py' 2026-07-15T07:37:29,830 adding 'fibsem/ui/FibsemImageSettingsWidget.py' 2026-07-15T07:37:29,834 adding 'fibsem/ui/FibsemLabellingUI.py' 2026-07-15T07:37:29,836 adding 'fibsem/ui/FibsemManipulatorWidget.py' 2026-07-15T07:37:29,837 adding 'fibsem/ui/FibsemMicroscopeConfigurationWidget.py' 2026-07-15T07:37:29,840 adding 'fibsem/ui/FibsemMicroscopeConfigurationWidgetBase.py' 2026-07-15T07:37:29,847 adding 'fibsem/ui/FibsemMinimapWidget.py' 2026-07-15T07:37:29,849 adding 'fibsem/ui/FibsemModelTrainingWidget.py' 2026-07-15T07:37:29,852 adding 'fibsem/ui/FibsemMovementWidget.py' 2026-07-15T07:37:29,853 adding 'fibsem/ui/FibsemSegmentationModelWidget.py' 2026-07-15T07:37:29,855 adding 'fibsem/ui/FibsemSpotBurnWidget.py' 2026-07-15T07:37:29,857 adding 'fibsem/ui/FibsemSystemSetupWidget.py' 2026-07-15T07:37:29,859 adding 'fibsem/ui/FibsemUI.py' 2026-07-15T07:37:29,860 adding 'fibsem/ui/__init__.py' 2026-07-15T07:37:29,861 adding 'fibsem/ui/icon.py' 2026-07-15T07:37:29,863 adding 'fibsem/ui/notification_service.py' 2026-07-15T07:37:29,865 adding 'fibsem/ui/stylesheets.py' 2026-07-15T07:37:29,867 adding 'fibsem/ui/utils.py' 2026-07-15T07:37:29,870 adding 'fibsem/ui/fm/widgets/__init__.py' 2026-07-15T07:37:29,871 adding 'fibsem/ui/fm/widgets/acquisition_summary_dialog.py' 2026-07-15T07:37:29,873 adding 'fibsem/ui/fm/widgets/autofocus_widget.py' 2026-07-15T07:37:29,875 adding 'fibsem/ui/fm/widgets/autofocus_widget_demo.py' 2026-07-15T07:37:29,877 adding 'fibsem/ui/fm/widgets/camera_widget.py' 2026-07-15T07:37:29,880 adding 'fibsem/ui/fm/widgets/channel_list_widget.py' 2026-07-15T07:37:29,882 adding 'fibsem/ui/fm/widgets/channel_settings_widget.py' 2026-07-15T07:37:29,883 adding 'fibsem/ui/fm/widgets/display_options_dialog.py' 2026-07-15T07:37:29,886 adding 'fibsem/ui/fm/widgets/fluorescence_plot_widget.py' 2026-07-15T07:37:29,887 adding 'fibsem/ui/fm/widgets/fm_image_viewer_widget.py' 2026-07-15T07:37:29,889 adding 'fibsem/ui/fm/widgets/fm_multi_channel_widget.py' 2026-07-15T07:37:29,891 adding 'fibsem/ui/fm/widgets/histogram_widget.py' 2026-07-15T07:37:29,894 adding 'fibsem/ui/fm/widgets/line_plot_widget.py' 2026-07-15T07:37:29,896 adding 'fibsem/ui/fm/widgets/load_image_dialog.py' 2026-07-15T07:37:29,901 adding 'fibsem/ui/fm/widgets/minimap_plot_widget.py' 2026-07-15T07:37:29,903 adding 'fibsem/ui/fm/widgets/minimap_plot_widget_example.py' 2026-07-15T07:37:29,905 adding 'fibsem/ui/fm/widgets/objective_control_widget.py' 2026-07-15T07:37:29,907 adding 'fibsem/ui/fm/widgets/overview_confirmation_dialog.py' 2026-07-15T07:37:29,909 adding 'fibsem/ui/fm/widgets/overview_parameters_widget.py' 2026-07-15T07:37:29,911 adding 'fibsem/ui/fm/widgets/saved_positions_widget.py' 2026-07-15T07:37:29,913 adding 'fibsem/ui/fm/widgets/sem_acquisition_widget.py' 2026-07-15T07:37:29,914 adding 'fibsem/ui/fm/widgets/stage_position_control_widget.py' 2026-07-15T07:37:29,916 adding 'fibsem/ui/fm/widgets/test_channel_list_widget.py' 2026-07-15T07:37:29,917 adding 'fibsem/ui/fm/widgets/test_line_plot.py' 2026-07-15T07:37:29,919 adding 'fibsem/ui/fm/widgets/z_parameters_widget.py' 2026-07-15T07:37:29,921 adding 'fibsem/ui/icons/check.svg' 2026-07-15T07:37:29,922 adding 'fibsem/ui/icons/chevron_down.svg' 2026-07-15T07:37:29,924 adding 'fibsem/ui/icons/drag_handle.svg' 2026-07-15T07:37:29,925 adding 'fibsem/ui/icons/minus.svg' 2026-07-15T07:37:29,926 adding 'fibsem/ui/icons/plus.svg' 2026-07-15T07:37:29,930 adding 'fibsem/ui/napari/patterns.py' 2026-07-15T07:37:29,932 adding 'fibsem/ui/napari/properties.py' 2026-07-15T07:37:29,934 adding 'fibsem/ui/napari/utilities.py' 2026-07-15T07:37:29,937 adding 'fibsem/ui/qtdesigner_files/FibsemCryoDepositionWidget.py' 2026-07-15T07:37:29,938 adding 'fibsem/ui/qtdesigner_files/FibsemFeatureDetectionUI.py' 2026-07-15T07:37:29,939 adding 'fibsem/ui/qtdesigner_files/FibsemLabellingUI.py' 2026-07-15T07:37:29,941 adding 'fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py' 2026-07-15T07:37:29,942 adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidget.py' 2026-07-15T07:37:29,946 adding 'fibsem/ui/qtdesigner_files/FibsemMicroscopeConfigurationWidgetBase.py' 2026-07-15T07:37:29,948 adding 'fibsem/ui/qtdesigner_files/FibsemModelTrainingWidget.py' 2026-07-15T07:37:29,949 adding 'fibsem/ui/qtdesigner_files/FibsemSegmentationModelWidget.py' 2026-07-15T07:37:29,950 adding 'fibsem/ui/qtdesigner_files/FibsemSpotBurnWidget.py' 2026-07-15T07:37:29,952 adding 'fibsem/ui/qtdesigner_files/FibsemSystemSetupWidget.py' 2026-07-15T07:37:29,953 adding 'fibsem/ui/qtdesigner_files/FibsemUI.py' 2026-07-15T07:37:29,955 adding 'fibsem/ui/qtdesigner_files/detection_dialog.py' 2026-07-15T07:37:29,957 adding 'fibsem/ui/qtdesigner_files/image_viewer.py' 2026-07-15T07:37:29,961 adding 'fibsem/ui/widgets/angle_measure.py' 2026-07-15T07:37:29,962 adding 'fibsem/ui/widgets/annotation_pin.py' 2026-07-15T07:37:29,964 adding 'fibsem/ui/widgets/autolamella_apply_protocol_dialog.py' 2026-07-15T07:37:29,967 adding 'fibsem/ui/widgets/autolamella_create_experiment_widget.py' 2026-07-15T07:37:29,970 adding 'fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py' 2026-07-15T07:37:29,972 adding 'fibsem/ui/widgets/autolamella_generate_report_widget.py' 2026-07-15T07:37:29,975 adding 'fibsem/ui/widgets/autolamella_global_task_editor_dialog.py' 2026-07-15T07:37:29,979 adding 'fibsem/ui/widgets/autolamella_lamella_protocol_editor.py' 2026-07-15T07:37:29,983 adding 'fibsem/ui/widgets/autolamella_load_experiment_widget.py' 2026-07-15T07:37:29,986 adding 'fibsem/ui/widgets/autolamella_load_task_protocol_widget.py' 2026-07-15T07:37:29,989 adding 'fibsem/ui/widgets/autolamella_overview_image_widget.py' 2026-07-15T07:37:29,991 adding 'fibsem/ui/widgets/autolamella_protocol_information_widget.py' 2026-07-15T07:37:29,993 adding 'fibsem/ui/widgets/autolamella_spot_burn_coordinates_widget.py' 2026-07-15T07:37:29,996 adding 'fibsem/ui/widgets/autolamella_task_config_editor.py' 2026-07-15T07:37:29,999 adding 'fibsem/ui/widgets/autolamella_task_config_widget.py' 2026-07-15T07:37:30,002 adding 'fibsem/ui/widgets/beam_settings_widget.py' 2026-07-15T07:37:30,003 adding 'fibsem/ui/widgets/beam_widget.py' 2026-07-15T07:37:30,005 adding 'fibsem/ui/widgets/bug_report_widget.py' 2026-07-15T07:37:30,007 adding 'fibsem/ui/widgets/contrast_gamma_control.py' 2026-07-15T07:37:30,012 adding 'fibsem/ui/widgets/custom_widgets.py' 2026-07-15T07:37:30,014 adding 'fibsem/ui/widgets/dataframe_table_widget.py' 2026-07-15T07:37:30,015 adding 'fibsem/ui/widgets/detector_settings_widget.py' 2026-07-15T07:37:30,018 adding 'fibsem/ui/widgets/drag_distance.py' 2026-07-15T07:37:30,020 adding 'fibsem/ui/widgets/dual_beam_widget.py' 2026-07-15T07:37:30,021 adding 'fibsem/ui/widgets/fibsem_image_flow_widget.py' 2026-07-15T07:37:30,029 adding 'fibsem/ui/widgets/fluorescence_coincidence_viewer_widget.py' 2026-07-15T07:37:30,032 adding 'fibsem/ui/widgets/fluorescence_coincidence_widget.py' 2026-07-15T07:37:30,037 adding 'fibsem/ui/widgets/fluorescence_control_widget.py' 2026-07-15T07:37:30,039 adding 'fibsem/ui/widgets/hook_config_widget.py' 2026-07-15T07:37:30,041 adding 'fibsem/ui/widgets/hud_ticker.py' 2026-07-15T07:37:30,044 adding 'fibsem/ui/widgets/image_annotation_widget.py' 2026-07-15T07:37:30,049 adding 'fibsem/ui/widgets/image_canvas.py' 2026-07-15T07:37:30,052 adding 'fibsem/ui/widgets/image_settings_widget.py' 2026-07-15T07:37:30,054 adding 'fibsem/ui/widgets/lamella_card_widget.py' 2026-07-15T07:37:30,056 adding 'fibsem/ui/widgets/lamella_default_config_widget.py' 2026-07-15T07:37:30,058 adding 'fibsem/ui/widgets/lamella_list_widget.py' 2026-07-15T07:37:30,060 adding 'fibsem/ui/widgets/lamella_pose_list_widget.py' 2026-07-15T07:37:30,062 adding 'fibsem/ui/widgets/lamella_task_image_widget.py' 2026-07-15T07:37:30,064 adding 'fibsem/ui/widgets/lamella_workflow_widget.py' 2026-07-15T07:37:30,067 adding 'fibsem/ui/widgets/microscope_config_widget.py' 2026-07-15T07:37:30,069 adding 'fibsem/ui/widgets/milling_alignment_widget.py' 2026-07-15T07:37:30,070 adding 'fibsem/ui/widgets/milling_settings_widget.py' 2026-07-15T07:37:30,073 adding 'fibsem/ui/widgets/milling_stage_list_widget.py' 2026-07-15T07:37:30,075 adding 'fibsem/ui/widgets/milling_stages_widget.py' 2026-07-15T07:37:30,077 adding 'fibsem/ui/widgets/milling_task_acquisition_settings_widget.py' 2026-07-15T07:37:30,079 adding 'fibsem/ui/widgets/milling_task_config_widget2.py' 2026-07-15T07:37:30,081 adding 'fibsem/ui/widgets/milling_task_viewer_widget.py' 2026-07-15T07:37:30,083 adding 'fibsem/ui/widgets/milling_widget.py' 2026-07-15T07:37:30,085 adding 'fibsem/ui/widgets/notifications.py' 2026-07-15T07:37:30,087 adding 'fibsem/ui/widgets/overview_acquisition_settings_widget.py' 2026-07-15T07:37:30,089 adding 'fibsem/ui/widgets/pattern_settings_widget.py' 2026-07-15T07:37:30,091 adding 'fibsem/ui/widgets/preferences_dialog.py' 2026-07-15T07:37:30,093 adding 'fibsem/ui/widgets/profile_line.py' 2026-07-15T07:37:30,095 adding 'fibsem/ui/widgets/progress_widget.py' 2026-07-15T07:37:30,097 adding 'fibsem/ui/widgets/radial_menu.py' 2026-07-15T07:37:30,099 adding 'fibsem/ui/widgets/reference_image_parameters_widget.py' 2026-07-15T07:37:30,101 adding 'fibsem/ui/widgets/sample_holder_widget.py' 2026-07-15T07:37:30,103 adding 'fibsem/ui/widgets/saved_position_widget.py' 2026-07-15T07:37:30,105 adding 'fibsem/ui/widgets/selected_lamella_widget.py' 2026-07-15T07:37:30,107 adding 'fibsem/ui/widgets/strategy_settings_widget.py' 2026-07-15T07:37:30,109 adding 'fibsem/ui/widgets/task_history_table_widget.py' 2026-07-15T07:37:30,110 adding 'fibsem/ui/widgets/task_summary_formatting.py' 2026-07-15T07:37:30,112 adding 'fibsem/ui/widgets/tiled_overview_widget.py' 2026-07-15T07:37:30,114 adding 'fibsem/ui/widgets/workflow_config_widget.py' 2026-07-15T07:37:30,116 adding 'fibsem/ui/widgets/workflow_info_widget.py' 2026-07-15T07:37:30,118 adding 'fibsem/ui/widgets/workflow_summary_dialog.py' 2026-07-15T07:37:30,120 adding 'fibsem/ui/widgets/workflow_task_editor_widget.py' 2026-07-15T07:37:30,123 adding 'fibsem/ui/widgets/workflow_timeline_widget.py' 2026-07-15T07:37:30,125 adding 'fibsem/ui/widgets/zoom_loupe.py' 2026-07-15T07:37:30,128 adding 'fibsem/ui/widgets/tests/test-icon-tool-button.py' 2026-07-15T07:37:30,129 adding 'fibsem/ui/widgets/tests/test-image-settings-widget.py' 2026-07-15T07:37:30,131 adding 'fibsem/ui/widgets/tests/test-lamella-card.py' 2026-07-15T07:37:30,132 adding 'fibsem/ui/widgets/tests/test-lamella-list.py' 2026-07-15T07:37:30,134 adding 'fibsem/ui/widgets/tests/test-lamella-workflow.py' 2026-07-15T07:37:30,135 adding 'fibsem/ui/widgets/tests/test-progress-bar.py' 2026-07-15T07:37:30,136 adding 'fibsem/ui/widgets/tests/test-selected-lamella.py' 2026-07-15T07:37:30,138 adding 'fibsem/ui/widgets/tests/test-spinner-icon.py' 2026-07-15T07:37:30,139 adding 'fibsem/ui/widgets/tests/test-workflow-config.py' 2026-07-15T07:37:30,141 adding 'fibsem/ui/widgets/tests/test_alignment_comparison.py' 2026-07-15T07:37:30,142 adding 'fibsem/ui/widgets/tests/test_alignment_plot_v2.py' 2026-07-15T07:37:30,144 adding 'fibsem/ui/widgets/tests/test_countdown_progress.py' 2026-07-15T07:37:30,145 adding 'fibsem/ui/widgets/tests/test_drag_distance.py' 2026-07-15T07:37:30,146 adding 'fibsem/ui/widgets/tests/test_hooks_manual.py' 2026-07-15T07:37:30,148 adding 'fibsem/ui/widgets/tests/test_image_canvas.py' 2026-07-15T07:37:30,149 adding 'fibsem/ui/widgets/tests/test_lamella_default_config_widget.py' 2026-07-15T07:37:30,151 adding 'fibsem/ui/widgets/tests/test_lamella_name_list_widget.py' 2026-07-15T07:37:30,152 adding 'fibsem/ui/widgets/tests/test_lamella_task_image_widget.py' 2026-07-15T07:37:30,153 adding 'fibsem/ui/widgets/tests/test_milling_settings_widget.py' 2026-07-15T07:37:30,155 adding 'fibsem/ui/widgets/tests/test_milling_stage_list.py' 2026-07-15T07:37:30,156 adding 'fibsem/ui/widgets/tests/test_milling_stages_widget.py' 2026-07-15T07:37:30,158 adding 'fibsem/ui/widgets/tests/test_milling_task_config_widget2.py' 2026-07-15T07:37:30,159 adding 'fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py' 2026-07-15T07:37:30,161 adding 'fibsem/ui/widgets/tests/test_pattern_settings_widget.py' 2026-07-15T07:37:30,162 adding 'fibsem/ui/widgets/tests/test_progress_widget.py' 2026-07-15T07:37:30,163 adding 'fibsem/ui/widgets/tests/test_radial_menu.py' 2026-07-15T07:37:30,165 adding 'fibsem/ui/widgets/tests/test_radial_ruler_demo.py' 2026-07-15T07:37:30,167 adding 'fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py' 2026-07-15T07:37:30,168 adding 'fibsem/ui/widgets/tests/test_saved_position_widget.py' 2026-07-15T07:37:30,170 adding 'fibsem/ui/widgets/tests/test_splitter_layouts.py' 2026-07-15T07:37:30,171 adding 'fibsem/ui/widgets/tests/test_toast.py' 2026-07-15T07:37:30,172 adding 'fibsem/ui/widgets/tests/test_workflow_task_editor_widget.py' 2026-07-15T07:37:30,174 adding 'fibsem/ui/widgets/tests/test_workflow_timeline_animation.py' 2026-07-15T07:37:30,176 adding 'fibsem/util/__init__.py' 2026-07-15T07:37:30,178 adding 'fibsem/util/draw_numbers.py' 2026-07-15T07:37:30,179 adding 'fibsem/util/filename.py' 2026-07-15T07:37:30,182 adding 'fibsem-0.5.1.dev0.dist-info/licenses/LICENSE' 2026-07-15T07:37:30,184 adding 'fibsem-0.5.1.dev0.dist-info/METADATA' 2026-07-15T07:37:30,185 adding 'fibsem-0.5.1.dev0.dist-info/WHEEL' 2026-07-15T07:37:30,186 adding 'fibsem-0.5.1.dev0.dist-info/entry_points.txt' 2026-07-15T07:37:30,187 adding 'fibsem-0.5.1.dev0.dist-info/top_level.txt' 2026-07-15T07:37:30,194 adding 'fibsem-0.5.1.dev0.dist-info/RECORD' 2026-07-15T07:37:30,301 removing build/bdist.linux-armv7l/wheel 2026-07-15T07:37:30,510 Building wheel for fibsem (pyproject.toml): finished with status 'done' 2026-07-15T07:37:30,719 Created wheel for fibsem: filename=fibsem-0.5.1.dev0-py3-none-any.whl size=10622358 sha256=b8cd779fc167c8803178d0781940f5d74e8b3267d0387f5e53d7be65e551eb61 2026-07-15T07:37:30,721 Stored in directory: /tmp/pip-ephem-wheel-cache-glbt43_0/wheels/1a/c1/64/ff5729424aac096c30cd5f9271016e5d6b16faa148dfd87226 2026-07-15T07:37:30,748 Successfully built fibsem 2026-07-15T07:37:31,010 Removed build tracker: '/tmp/pip-build-tracker-0gancnum'