2026-07-25T23:13:31,745 Created temporary directory: /tmp/pip-ephem-wheel-cache-opdj9ik3 2026-07-25T23:13:31,748 Created temporary directory: /tmp/pip-build-tracker-ecp6p45j 2026-07-25T23:13:31,748 Initialized build tracking at /tmp/pip-build-tracker-ecp6p45j 2026-07-25T23:13:31,749 Created build tracker: /tmp/pip-build-tracker-ecp6p45j 2026-07-25T23:13:31,749 Entered build tracker: /tmp/pip-build-tracker-ecp6p45j 2026-07-25T23:13:31,751 Created temporary directory: /tmp/pip-wheel-ayjm_bh0 2026-07-25T23:13:31,754 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-25T23:13:31,756 Created temporary directory: /tmp/pip-ephem-wheel-cache-y325ghiz 2026-07-25T23:13:31,778 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-25T23:13:31,782 2 location(s) to search for versions of fibsem: 2026-07-25T23:13:31,782 * https://pypi.org/simple/fibsem/ 2026-07-25T23:13:31,782 * https://www.piwheels.org/simple/fibsem/ 2026-07-25T23:13:31,782 Fetching project page and analyzing links: https://pypi.org/simple/fibsem/ 2026-07-25T23:13:31,783 Getting page https://pypi.org/simple/fibsem/ 2026-07-25T23:13:31,785 Found index url https://pypi.org/simple 2026-07-25T23:13:32,025 Fetched page https://pypi.org/simple/fibsem/ as application/vnd.pypi.simple.v1+json 2026-07-25T23:13:32,036 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/4c/cf/0ed2a796e278cf9de3d52e287cc7d8d9892c21c0a00920a9ff30f5033a56/fibsem-0.2.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,037 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ad/73/b8cf8db0dba6e191be400b025e534b4f6d7d18c39d86428101720ee58e4e/fibsem-0.2.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,038 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d7/30/b93e42954d23659272a1b8ac6f3dd60da6eff0df55fc4d31bb515f6934eb/fibsem-0.2.2a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,039 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/c8/8f/4bfbe20bfa2ca615b74ad68a1317c1b61df9a93f5f8c9df9e223c9b20623/fibsem-0.2.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,040 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/7c/63/681df259de02d04424d8e71530649f0949504d5b31aaf5086651b5804d0c/fibsem-0.2.3a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,040 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/36/98/67400e49fe61d7e9e58d04099a516c039d4493a9ce346276a2cb37774dcd/fibsem-0.2.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,041 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/39/cc/5b8579067af3dc74509ceaba38d5117cde72f44a85ca8bcc56f5ebee7260/fibsem-0.2.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,042 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/43/13/625dba2d4741c02a3e6c970399a725b644b9a058dadb2f5fea9e9420b4e3/fibsem-0.2.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,043 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/87/1d/1562b356490f6c485f927c52d4b36e774bd5b9588d7a8da4a3dc9432db01/fibsem-0.3.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,044 Found link https://files.pythonhosted.org/packages/ad/3e/400c07e0574bbab09f711951db2f6ad3f367a8feff8f6cbafa7af89fd67a/fibsem-0.3.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a0 2026-07-25T23:13:32,046 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/df/fb/4bad22a49352a49befdb7d1513163de5d8d1a4cfb0e60fa3ac4c67f20482/fibsem-0.3.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,048 Found link https://files.pythonhosted.org/packages/4e/58/d870caa49f7754b016226db2b7f0ec101164622fc2e82511e7bae7f95af6/fibsem-0.3.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0a1 2026-07-25T23:13:32,049 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/05/51/0a0cc14778c2ae7f68a601aa26821327fc35e08bc81546ba6e3d10bc704f/fibsem-0.3.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,050 Found link https://files.pythonhosted.org/packages/fc/2b/fea39a412194d35634c6d7f2e0768021aa0f024b880a17251a3f377e1c5c/fibsem-0.3.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.0 2026-07-25T23:13:32,051 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/32/8b/d53be8a146bfa866e850b13e6b80977d4c1bc527852fc4d0c0cfe0b6fc56/fibsem-0.3.1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,053 Found link https://files.pythonhosted.org/packages/52/84/03322d031fa283e8c468f6e706d59b3efe59dbb4e2341ffa012c5f68c127/fibsem-0.3.1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.1 2026-07-25T23:13:32,054 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/07/65/22b4f873c57c647b123c552214de8f533f12706e6ff2b419f08b02c6f421/fibsem-0.3.2a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,056 Found link https://files.pythonhosted.org/packages/78/de/5da6cf780c6ae414322a1fd3ae2f80223b2ab197b5045886658688b67986/fibsem-0.3.2a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2a1 2026-07-25T23:13:32,057 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/f1/9d/ddd526104faf19ad44ad941b136dc14a30e289abdfdffba15bc11d34580d/fibsem-0.3.2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,059 Found link https://files.pythonhosted.org/packages/ef/10/13c01c548f92955d5069ea9caebdd1023f876a338bc336ac42356f609ee3/fibsem-0.3.2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.2 2026-07-25T23:13:32,060 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/11/d6/ca062c93720e61354700869b036fbf65a1c66d5ce32d7d6c4bc341aacc1b/fibsem-0.3.3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,062 Found link https://files.pythonhosted.org/packages/4e/ae/8048dff3e2eeb2c922176c5c412f1aed2346897e814bb76d175a9c1cd82e/fibsem-0.3.3.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.3 2026-07-25T23:13:32,063 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/21/59/9dd2fd247baf0dcb2eed618b0f769f5bc1536091bc1496b73c0938f40c46/fibsem-0.3.4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,065 Found link https://files.pythonhosted.org/packages/9f/62/1216f24d3f73e3d59fdd03335ac32354d65b09adf33df98bbe0e5557435c/fibsem-0.3.4.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.9), version: 0.3.4 2026-07-25T23:13:32,066 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/33/da/3b0edd81d35e70a37a7c6971bc14cf6f1319bbb2f6134a154a8b28438ae7/fibsem-0.3.5a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,067 Found link https://files.pythonhosted.org/packages/3d/9c/ab22b6240afebb565dc876215d16bc04f542f0ff2e613c67b4672f9204c2/fibsem-0.3.5a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5a0 2026-07-25T23:13:32,068 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/0f/a4/5e57da3c16013f96e4561ad7e626c80effe866291c940fec4e5fbae41422/fibsem-0.3.5a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,069 Found link https://files.pythonhosted.org/packages/f9/e9/9befd7e3843a21457f35f510c64de8e6838290535a98a395fa6e5908bf02/fibsem-0.3.5a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5a1 2026-07-25T23:13:32,069 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/75/eb/25cdfe7f1f81b41f7fbbd9cf96b56a98d7f4742591e5c3a8fb339a069a7d/fibsem-0.3.5-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,070 Found link https://files.pythonhosted.org/packages/8a/7e/10d7149bc1716834fedc742963e72fcc96bd285123f16709977bcb2684e9/fibsem-0.3.5.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.3.5 2026-07-25T23:13:32,071 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ae/f8/9c2df761ed582f1c2c92c7c46b6ee4aa2a8f1619d6e401de8385fc6e00e9/fibsem-0.4.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,072 Found link https://files.pythonhosted.org/packages/64/12/714c2603b3b3b4ebcfac53ade0c2ed0d224ab2a8bd917afd9fe00d5413d5/fibsem-0.4.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0a0 2026-07-25T23:13:32,072 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/95/33/9eefd81e39af42a7532203895ed23f99a09f414d85b6e9284aa476b102bc/fibsem-0.4.0a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,073 Found link https://files.pythonhosted.org/packages/1e/5e/26a692b01fbe9c5364137c3148600c9e2233781c9a0e34c8bfe1da84893d/fibsem-0.4.0a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0a1 2026-07-25T23:13:32,074 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/ec/ff/909e849d3be278770eb1508a10e2f939921f5ab95efa8c89a151c4521fa2/fibsem-0.4.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,075 Found link https://files.pythonhosted.org/packages/89/99/54e5d7dcca80171de48c15cffa723ebf5faf35d9200751a7b14f034219c9/fibsem-0.4.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.0 2026-07-25T23:13:32,075 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/b7/54/92008c36160b8efa013e845b339c19a50667ab80d8cd211a0b0136e4a378/fibsem-0.4.1a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,076 Found link https://files.pythonhosted.org/packages/09/b9/b86de8ca0eac74efc8b1e2377d831c85ab8d262ad6adf5bdb8bf88d709ea/fibsem-0.4.1a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a0 2026-07-25T23:13:32,077 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/b0/20/91878a10a278dbf43d56e655b3713730fd3a0a6335ced331bd4af4fc874e/fibsem-0.4.1a1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,078 Found link https://files.pythonhosted.org/packages/e5/17/b068e52e2c71cdc8828a5f0f31a356c0b7e09cb265efc2ffa08b2ab70ec9/fibsem-0.4.1a1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a1 2026-07-25T23:13:32,079 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/eb/f7/bc7aef2af42dbf3f5648ddd9c4c7930481ede0645e443a87d87e23dc3f08/fibsem-0.4.1a2-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,080 Found link https://files.pythonhosted.org/packages/9e/83/be802fe2f6e6fb705ebac5145db3d3a939d1b5e1327cb5bb8ad45c5f4305/fibsem-0.4.1a2.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a2 2026-07-25T23:13:32,081 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/15/82/c99977c3335d171af14c03d2f53a4a1bd048224ed87c01f80bc24340b105/fibsem-0.4.1a3-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,081 Found link https://files.pythonhosted.org/packages/f9/e9/54e857b1e5bb2b435024c52d8abb0b427ef158d26586e52a86f434714e0c/fibsem-0.4.1a3.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a3 2026-07-25T23:13:32,082 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/d0/9c/60e16a3d93af71b12812af969a172d1b9d369b960f60943f10ece0a2d167/fibsem-0.4.1a4-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,083 Found link https://files.pythonhosted.org/packages/19/7c/6056a88900926891a94bffde93b3a015c9c4dc5dfa9befff3f3933894309/fibsem-0.4.1a4.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.4.1a4 2026-07-25T23:13:32,084 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/cd/02/ca02f2a1e3bac94c02272882d51d877790d68389669e5d1c60307b88f496/fibsem-0.5.0a0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,085 Found link https://files.pythonhosted.org/packages/f6/6b/60043dfe9472157e09ffa3670331b8abeb3bd75dc02a8099505558e5e93f/fibsem-0.5.0a0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.5.0a0 2026-07-25T23:13:32,085 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/22/f7/5f10026a07d6a57a0076edd43b8cb2aa6c99ca7627d73d4148a79b4ce0b7/fibsem-0.5.0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,086 Found link https://files.pythonhosted.org/packages/66/de/006e53849fac7a6e5d6668db30c6cd33d4422d4a5249fbe74b30d1fe7c19/fibsem-0.5.0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.5.0 2026-07-25T23:13:32,087 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/fa/c6/310c18b0c691b9bbc25f3541c5badfbd94b8d7f343b38e8fb93837e4e105/fibsem-0.5.1.dev0-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,088 Found link https://files.pythonhosted.org/packages/4a/ca/7b5e0427b5a63c4eedfb29102f05009bd41485095a78e141fe276fe4b8a9/fibsem-0.5.1.dev0.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.5.1.dev0 2026-07-25T23:13:32,088 Skipping link: No binaries permitted for fibsem: https://files.pythonhosted.org/packages/2f/0b/880afaf9565756097ba9d93e856c221ef77aafa9ce43ca4fd33d2c798746/fibsem-0.5.1-py3-none-any.whl (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,089 Found link https://files.pythonhosted.org/packages/8a/5d/64ca3f4417f3e644c7cea7131bc585adbb4b943ec82ff93f4d3ee156e9e1/fibsem-0.5.1.tar.gz (from https://pypi.org/simple/fibsem/) (requires-python:>=3.8), version: 0.5.1 2026-07-25T23:13:32,090 Fetching project page and analyzing links: https://www.piwheels.org/simple/fibsem/ 2026-07-25T23:13:32,091 Getting page https://www.piwheels.org/simple/fibsem/ 2026-07-25T23:13:32,093 Found index url https://www.piwheels.org/simple 2026-07-25T23:13:32,977 Fetched page https://www.piwheels.org/simple/fibsem/ as text/html 2026-07-25T23:13:32,985 Skipping link: No binaries permitted for fibsem: https://www.piwheels.org/simple/fibsem/fibsem-0.5.1.dev0-py3-none-any.whl#sha256=b8cd779fc167c8803178d0781940f5d74e8b3267d0387f5e53d7be65e551eb61 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,986 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.5.0-py3-none-any.whl#sha256=4e555655d3ee154f94f19f852f0bdecd95e5c7f8a3da05e15d41613387b4a956 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,987 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.5.0a0-py3-none-any.whl#sha256=8f78e1d1482c67775abcba3f0c698dc068a0fc178b3300a51b9b677427dc81b0 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,987 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a4-py3-none-any.whl#sha256=2f04e69d16c03c706c43703b5ce41458efa13fe47eaa337b74e0d806509d3612 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,988 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a3-py3-none-any.whl#sha256=620cc24270b7a249a18139807818849e86a947f852c570645bc9f2c3b71db009 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,988 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a2-py3-none-any.whl#sha256=5557b81b8968a7f877b11c83853ed170098f2ee12566d77d98858c338aafc987 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,989 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a1-py3-none-any.whl#sha256=434323dc920982d3a11a05f9a371b789c651c079f5b3f52b4e0f9767e023a66d (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,989 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.1a0-py3-none-any.whl#sha256=8cdf5947bf8ac28f8c66c56b535af7e4642d6ef9e668f3d3b7c2152ded7de2a9 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,990 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0-py3-none-any.whl#sha256=d51667917771fa9625169eb96dbaca2b235a8ab7dc5f1ad678102966817c27b7 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,990 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0a1-py3-none-any.whl#sha256=35162b65a87e942fdae287f95d40ff34365a9fc9e91bce94cc45ebc8282649f4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,991 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.4.0a0-py3-none-any.whl#sha256=ca3bfce078100cd46e8df58808fc5047703e27d0a7caee586a6752762440536f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,992 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5-py3-none-any.whl#sha256=f8cb477984f69afce9e1c14235d4b8e40a1f277935b6f52ef50c0eca324cd39e (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,992 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5a1-py3-none-any.whl#sha256=77b52127685127a616d9707a30d4cb10f49b742d812f27d3e89e5c56bfdce097 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,993 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.5a0-py3-none-any.whl#sha256=d78b21af3febbdf8bf524f0bc121a306f875d0db18bac01bcca54e4e9a1e51e2 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.8) 2026-07-25T23:13:32,994 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.4-py3-none-any.whl#sha256=935ab1545a500df6e9fec6103fc7f2bbcd2709303844c87d666bb1d16193beab (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,994 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.3-py3-none-any.whl#sha256=a7b254be73ea431bbe9eba8b7fd7b425ad830568cfbf5ec0b574b350178d2e76 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,995 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.2-py3-none-any.whl#sha256=8dad9ff09be4720143e8d4a3866d6b17ed08c732b68f47dd110d400bfe2be28e (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,996 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.2a1-py3-none-any.whl#sha256=f5309995df9eadda9e861edc7dd4d07452210426b10d4c4da4c2b405eb8e2ac4 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,998 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.1-py3-none-any.whl#sha256=72ca906da40a31401ad7636438566ad77e6d6ef434c85d4517c7411645c41027 (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,999 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0-py3-none-any.whl#sha256=61d366cbae13eecb465c904050eba503bb875f93c6e743eedcfae3ca9cf5e2ac (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:32,999 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0a1-py3-none-any.whl#sha256=21ae6ee6be3ad2f8832a6d457a20aea2627a25340a672d8a42f9f0488d8a710c (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:33,000 Skipping link: No binaries permitted for fibsem: https://archive1.piwheels.org/simple/fibsem/fibsem-0.3.0a0-py3-none-any.whl#sha256=4e29ec9054961edc9242d2cb332c01000bcb0574069ad23261e41ac7f1489a4f (from https://www.piwheels.org/simple/fibsem/) (requires-python:>=3.9) 2026-07-25T23:13:33,001 Skipping link: not a file: https://www.piwheels.org/simple/fibsem/ 2026-07-25T23:13:33,003 Skipping link: not a file: https://pypi.org/simple/fibsem/ 2026-07-25T23:13:33,024 Given no hashes to check 1 links for project 'fibsem': discarding no candidates 2026-07-25T23:13:33,042 Collecting fibsem==0.5.1 2026-07-25T23:13:33,045 Created temporary directory: /tmp/pip-unpack-1prq_r7h 2026-07-25T23:13:33,328 Downloading fibsem-0.5.1.tar.gz (10.8 MB) 2026-07-25T23:13:37,430 Added fibsem==0.5.1 from https://files.pythonhosted.org/packages/8a/5d/64ca3f4417f3e644c7cea7131bc585adbb4b943ec82ff93f4d3ee156e9e1/fibsem-0.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-ecp6p45j' 2026-07-25T23:13:37,437 Created temporary directory: /tmp/pip-build-env-v_4z8uy6 2026-07-25T23:13:37,442 Installing build dependencies: started 2026-07-25T23:13:37,443 Running command pip subprocess to install build dependencies 2026-07-25T23:13:39,099 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-07-25T23:13:39,819 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-25T23:13:39,844 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-25T23:13:41,702 Collecting setuptools>=45 2026-07-25T23:13:41,703 Obtaining dependency information for setuptools>=45 from https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata 2026-07-25T23:13:41,719 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-07-25T23:13:42,196 Collecting wheel 2026-07-25T23:13:42,197 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-07-25T23:13:42,213 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-07-25T23:13:42,569 Collecting setuptools_scm[toml]>=6.2 2026-07-25T23:13:42,575 Using cached setuptools_scm-10.2.1-py3-none-any.whl (29 kB) 2026-07-25T23:13:42,765 Collecting packaging>=24.0 2026-07-25T23:13:42,766 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-07-25T23:13:42,780 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-07-25T23:13:42,901 Collecting vcs-versioning<3,>=2.0.0.dev0 2026-07-25T23:13:42,902 Obtaining dependency information for vcs-versioning<3,>=2.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.2-py3-none-any.whl.metadata 2026-07-25T23:13:42,917 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.2-py3-none-any.whl.metadata (1.7 kB) 2026-07-25T23:13:43,178 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-07-25T23:13:43,239 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-25T23:13:43,299 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.2-py3-none-any.whl (108 kB) 2026-07-25T23:13:43,431 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-25T23:13:43,503 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-07-25T23:13:43,528 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-25T23:13:43,557 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.2-py3-none-any.whl (108 kB) 2026-07-25T23:13:43,764 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-25T23:13:46,612 Installing collected packages: setuptools, packaging, wheel, vcs-versioning, setuptools_scm 2026-07-25T23:13:50,431 Creating /tmp/pip-build-env-v_4z8uy6/overlay/local/bin 2026-07-25T23:13:50,434 changing mode of /tmp/pip-build-env-v_4z8uy6/overlay/local/bin/wheel to 755 2026-07-25T23:13:50,827 changing mode of /tmp/pip-build-env-v_4z8uy6/overlay/local/bin/vcs-versioning to 755 2026-07-25T23:13:50,961 changing mode of /tmp/pip-build-env-v_4z8uy6/overlay/local/bin/setuptools-scm to 755 2026-07-25T23:13:50,996 Successfully installed packaging-26.2 setuptools-83.0.0 setuptools_scm-10.2.1 vcs-versioning-2.2.2 wheel-0.47.0 2026-07-25T23:13:51,298 Installing build dependencies: finished with status 'done' 2026-07-25T23:13:51,307 Getting requirements to build wheel: started 2026-07-25T23:13:51,308 Running command Getting requirements to build wheel 2026-07-25T23:13:52,296 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-25T23:13:52,297 !! 2026-07-25T23:13:52,298 ******************************************************************************** 2026-07-25T23:13:52,299 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-25T23:13:52,300 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-25T23:13:52,300 or your builds will no longer be supported. 2026-07-25T23:13:52,302 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-25T23:13:52,302 ******************************************************************************** 2026-07-25T23:13:52,303 !! 2026-07-25T23:13:52,304 corresp(dist, value, root_dir) 2026-07-25T23:13:52,350 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-25T23:13:52,351 !! 2026-07-25T23:13:52,351 ******************************************************************************** 2026-07-25T23:13:52,352 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-25T23:13:52,353 License :: OSI Approved :: MIT License 2026-07-25T23:13:52,354 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-25T23:13:52,354 ******************************************************************************** 2026-07-25T23:13:52,355 !! 2026-07-25T23:13:52,356 dist._finalize_license_expression() 2026-07-25T23:13:52,357 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-25T23:13:52,358 !! 2026-07-25T23:13:52,359 ******************************************************************************** 2026-07-25T23:13:52,359 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-25T23:13:52,360 License :: OSI Approved :: MIT License 2026-07-25T23:13:52,361 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-25T23:13:52,362 ******************************************************************************** 2026-07-25T23:13:52,363 !! 2026-07-25T23:13:52,363 self._finalize_license_expression() 2026-07-25T23:13:52,364 running egg_info 2026-07-25T23:13:52,367 writing fibsem.egg-info/PKG-INFO 2026-07-25T23:13:52,377 writing dependency_links to fibsem.egg-info/dependency_links.txt 2026-07-25T23:13:52,380 writing entry points to fibsem.egg-info/entry_points.txt 2026-07-25T23:13:52,386 writing requirements to fibsem.egg-info/requires.txt 2026-07-25T23:13:52,388 writing top-level names to fibsem.egg-info/top_level.txt 2026-07-25T23:13:52,436 listing git files failed - pretending there aren't any 2026-07-25T23:13:52,447 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2026-07-25T23:13:52,542 reading manifest template 'MANIFEST.in' 2026-07-25T23:13:52,545 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-07-25T23:13:52,547 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-07-25T23:13:52,549 warning: no previously-included files matching '*.ui' found under directory '*' 2026-07-25T23:13:52,550 adding license file 'LICENSE' 2026-07-25T23:13:52,567 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2026-07-25T23:13:52,675 Getting requirements to build wheel: finished with status 'done' 2026-07-25T23:13:52,679 Created temporary directory: /tmp/pip-modern-metadata-qbhaq8qo 2026-07-25T23:13:52,681 Preparing metadata (pyproject.toml): started 2026-07-25T23:13:52,683 Running command Preparing metadata (pyproject.toml) 2026-07-25T23:13:53,366 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-25T23:13:53,366 !! 2026-07-25T23:13:53,367 ******************************************************************************** 2026-07-25T23:13:53,368 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-25T23:13:53,369 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-25T23:13:53,370 or your builds will no longer be supported. 2026-07-25T23:13:53,371 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-25T23:13:53,371 ******************************************************************************** 2026-07-25T23:13:53,372 !! 2026-07-25T23:13:53,373 corresp(dist, value, root_dir) 2026-07-25T23:13:53,418 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-25T23:13:53,418 !! 2026-07-25T23:13:53,419 ******************************************************************************** 2026-07-25T23:13:53,420 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-25T23:13:53,421 License :: OSI Approved :: MIT License 2026-07-25T23:13:53,422 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-25T23:13:53,422 ******************************************************************************** 2026-07-25T23:13:53,423 !! 2026-07-25T23:13:53,424 dist._finalize_license_expression() 2026-07-25T23:13:53,426 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-25T23:13:53,427 !! 2026-07-25T23:13:53,428 ******************************************************************************** 2026-07-25T23:13:53,428 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-25T23:13:53,429 License :: OSI Approved :: MIT License 2026-07-25T23:13:53,430 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-25T23:13:53,431 ******************************************************************************** 2026-07-25T23:13:53,432 !! 2026-07-25T23:13:53,433 self._finalize_license_expression() 2026-07-25T23:13:53,434 running dist_info 2026-07-25T23:13:53,436 creating /tmp/pip-modern-metadata-qbhaq8qo/fibsem.egg-info 2026-07-25T23:13:53,443 writing /tmp/pip-modern-metadata-qbhaq8qo/fibsem.egg-info/PKG-INFO 2026-07-25T23:13:53,453 writing dependency_links to /tmp/pip-modern-metadata-qbhaq8qo/fibsem.egg-info/dependency_links.txt 2026-07-25T23:13:53,455 writing entry points to /tmp/pip-modern-metadata-qbhaq8qo/fibsem.egg-info/entry_points.txt 2026-07-25T23:13:53,462 writing requirements to /tmp/pip-modern-metadata-qbhaq8qo/fibsem.egg-info/requires.txt 2026-07-25T23:13:53,463 writing top-level names to /tmp/pip-modern-metadata-qbhaq8qo/fibsem.egg-info/top_level.txt 2026-07-25T23:13:53,465 writing manifest file '/tmp/pip-modern-metadata-qbhaq8qo/fibsem.egg-info/SOURCES.txt' 2026-07-25T23:13:53,508 listing git files failed - pretending there aren't any 2026-07-25T23:13:53,516 reading manifest file '/tmp/pip-modern-metadata-qbhaq8qo/fibsem.egg-info/SOURCES.txt' 2026-07-25T23:13:53,518 reading manifest template 'MANIFEST.in' 2026-07-25T23:13:53,520 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-07-25T23:13:53,521 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-07-25T23:13:53,522 warning: no previously-included files matching '*.ui' found under directory '*' 2026-07-25T23:13:53,522 adding license file 'LICENSE' 2026-07-25T23:13:53,525 writing manifest file '/tmp/pip-modern-metadata-qbhaq8qo/fibsem.egg-info/SOURCES.txt' 2026-07-25T23:13:53,527 creating '/tmp/pip-modern-metadata-qbhaq8qo/fibsem-0.5.1.dist-info' 2026-07-25T23:13:53,666 Preparing metadata (pyproject.toml): finished with status 'done' 2026-07-25T23:13:53,671 Source in /tmp/pip-wheel-ayjm_bh0/fibsem_f9fa7e1705a74d76b9b8b176ba523f29 has version 0.5.1, which satisfies requirement fibsem==0.5.1 from https://files.pythonhosted.org/packages/8a/5d/64ca3f4417f3e644c7cea7131bc585adbb4b943ec82ff93f4d3ee156e9e1/fibsem-0.5.1.tar.gz 2026-07-25T23:13:53,672 Removed fibsem==0.5.1 from https://files.pythonhosted.org/packages/8a/5d/64ca3f4417f3e644c7cea7131bc585adbb4b943ec82ff93f4d3ee156e9e1/fibsem-0.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-ecp6p45j' 2026-07-25T23:13:53,678 Created temporary directory: /tmp/pip-unpack-gh_c3942 2026-07-25T23:13:53,679 Building wheels for collected packages: fibsem 2026-07-25T23:13:53,683 Created temporary directory: /tmp/pip-wheel-jhn3h21w 2026-07-25T23:13:53,684 Destination directory: /tmp/pip-wheel-jhn3h21w 2026-07-25T23:13:53,686 Building wheel for fibsem (pyproject.toml): started 2026-07-25T23:13:53,687 Running command Building wheel for fibsem (pyproject.toml) 2026-07-25T23:13:54,638 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-25T23:13:54,638 !! 2026-07-25T23:13:54,639 ******************************************************************************** 2026-07-25T23:13:54,640 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-25T23:13:54,641 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-25T23:13:54,641 or your builds will no longer be supported. 2026-07-25T23:13:54,642 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-25T23:13:54,642 ******************************************************************************** 2026-07-25T23:13:54,644 !! 2026-07-25T23:13:54,644 corresp(dist, value, root_dir) 2026-07-25T23:13:54,687 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-25T23:13:54,687 !! 2026-07-25T23:13:54,689 ******************************************************************************** 2026-07-25T23:13:54,689 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-25T23:13:54,690 License :: OSI Approved :: MIT License 2026-07-25T23:13:54,692 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-25T23:13:54,692 ******************************************************************************** 2026-07-25T23:13:54,693 !! 2026-07-25T23:13:54,694 dist._finalize_license_expression() 2026-07-25T23:13:54,696 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-07-25T23:13:54,697 !! 2026-07-25T23:13:54,698 ******************************************************************************** 2026-07-25T23:13:54,699 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-07-25T23:13:54,700 License :: OSI Approved :: MIT License 2026-07-25T23:13:54,701 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-25T23:13:54,701 ******************************************************************************** 2026-07-25T23:13:54,702 !! 2026-07-25T23:13:54,703 self._finalize_license_expression() 2026-07-25T23:13:54,704 running bdist_wheel 2026-07-25T23:13:54,724 running build 2026-07-25T23:13:54,724 running build_py 2026-07-25T23:13:54,726 creating build/lib/fibsem 2026-07-25T23:13:54,728 copying fibsem/calibration.py -> build/lib/fibsem 2026-07-25T23:13:54,731 copying fibsem/config.py -> build/lib/fibsem 2026-07-25T23:13:54,734 copying fibsem/cancellation.py -> build/lib/fibsem 2026-07-25T23:13:54,736 copying fibsem/transformations.py -> build/lib/fibsem 2026-07-25T23:13:54,738 copying fibsem/cli.py -> build/lib/fibsem 2026-07-25T23:13:54,740 copying fibsem/movement.py -> build/lib/fibsem 2026-07-25T23:13:54,742 copying fibsem/constants.py -> build/lib/fibsem 2026-07-25T23:13:54,744 copying fibsem/logo.py -> build/lib/fibsem 2026-07-25T23:13:54,746 copying fibsem/acquire.py -> build/lib/fibsem 2026-07-25T23:13:54,748 copying fibsem/__init__.py -> build/lib/fibsem 2026-07-25T23:13:54,750 copying fibsem/configuration.py -> build/lib/fibsem 2026-07-25T23:13:54,752 copying fibsem/structures.py -> build/lib/fibsem 2026-07-25T23:13:54,756 copying fibsem/conversions.py -> build/lib/fibsem 2026-07-25T23:13:54,758 copying fibsem/gis.py -> build/lib/fibsem 2026-07-25T23:13:54,760 copying fibsem/validation.py -> build/lib/fibsem 2026-07-25T23:13:54,763 copying fibsem/utils.py -> build/lib/fibsem 2026-07-25T23:13:54,765 copying fibsem/microscope.py -> build/lib/fibsem 2026-07-25T23:13:54,771 running egg_info 2026-07-25T23:13:54,778 writing fibsem.egg-info/PKG-INFO 2026-07-25T23:13:54,788 writing dependency_links to fibsem.egg-info/dependency_links.txt 2026-07-25T23:13:54,790 writing entry points to fibsem.egg-info/entry_points.txt 2026-07-25T23:13:54,796 writing requirements to fibsem.egg-info/requires.txt 2026-07-25T23:13:54,797 writing top-level names to fibsem.egg-info/top_level.txt 2026-07-25T23:13:54,833 listing git files failed - pretending there aren't any 2026-07-25T23:13:54,840 reading manifest file 'fibsem.egg-info/SOURCES.txt' 2026-07-25T23:13:54,867 reading manifest template 'MANIFEST.in' 2026-07-25T23:13:54,870 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-07-25T23:13:54,872 warning: no previously-included files matching '*.py[co]' found under directory '*' 2026-07-25T23:13:54,875 warning: no previously-included files matching '*.ui' found under directory '*' 2026-07-25T23:13:54,875 adding license file 'LICENSE' 2026-07-25T23:13:54,892 writing manifest file 'fibsem.egg-info/SOURCES.txt' 2026-07-25T23:13:54,896 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.alignment' is absent from the `packages` configuration. 2026-07-25T23:13:54,897 !! 2026-07-25T23:13:54,898 ******************************************************************************** 2026-07-25T23:13:54,898 ############################ 2026-07-25T23:13:54,899 # Package would be ignored # 2026-07-25T23:13:54,899 ############################ 2026-07-25T23:13:54,900 Python recognizes 'fibsem.alignment' as an importable package[^1], 2026-07-25T23:13:54,900 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:54,901 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:54,902 package, please make sure that 'fibsem.alignment' is explicitly added 2026-07-25T23:13:54,902 to the `packages` configuration field. 2026-07-25T23:13:54,904 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:54,904 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:54,905 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:54,906 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:54,907 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:54,908 If you don't want 'fibsem.alignment' to be distributed and are 2026-07-25T23:13:54,908 already explicitly excluding 'fibsem.alignment' via 2026-07-25T23:13:54,909 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:54,909 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:54,910 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:54,911 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:54,912 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:54,913 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:54,914 even if it does not contain any `.py` files. 2026-07-25T23:13:54,914 On the other hand, currently there is no concept of package data 2026-07-25T23:13:54,914 directory, all directories are treated like packages. 2026-07-25T23:13:54,915 ******************************************************************************** 2026-07-25T23:13:54,916 !! 2026-07-25T23:13:54,916 check.warn(importable) 2026-07-25T23:13:54,917 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications' is absent from the `packages` configuration. 2026-07-25T23:13:54,917 !! 2026-07-25T23:13:54,918 ******************************************************************************** 2026-07-25T23:13:54,918 ############################ 2026-07-25T23:13:54,919 # Package would be ignored # 2026-07-25T23:13:54,919 ############################ 2026-07-25T23:13:54,920 Python recognizes 'fibsem.applications' as an importable package[^1], 2026-07-25T23:13:54,920 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:54,921 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:54,921 package, please make sure that 'fibsem.applications' is explicitly added 2026-07-25T23:13:54,922 to the `packages` configuration field. 2026-07-25T23:13:54,923 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:54,923 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:54,924 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:54,925 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:54,926 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:54,927 If you don't want 'fibsem.applications' to be distributed and are 2026-07-25T23:13:54,927 already explicitly excluding 'fibsem.applications' via 2026-07-25T23:13:54,928 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:54,928 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:54,929 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:54,930 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:54,930 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:54,932 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:54,932 even if it does not contain any `.py` files. 2026-07-25T23:13:54,933 On the other hand, currently there is no concept of package data 2026-07-25T23:13:54,933 directory, all directories are treated like packages. 2026-07-25T23:13:54,933 ******************************************************************************** 2026-07-25T23:13:54,934 !! 2026-07-25T23:13:54,935 check.warn(importable) 2026-07-25T23:13:54,935 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella' is absent from the `packages` configuration. 2026-07-25T23:13:54,936 !! 2026-07-25T23:13:54,937 ******************************************************************************** 2026-07-25T23:13:54,937 ############################ 2026-07-25T23:13:54,938 # Package would be ignored # 2026-07-25T23:13:54,939 ############################ 2026-07-25T23:13:54,939 Python recognizes 'fibsem.applications.autolamella' as an importable package[^1], 2026-07-25T23:13:54,939 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:54,940 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:54,940 package, please make sure that 'fibsem.applications.autolamella' is explicitly added 2026-07-25T23:13:54,940 to the `packages` configuration field. 2026-07-25T23:13:54,941 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:54,941 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:54,942 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:54,943 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:54,943 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:54,944 If you don't want 'fibsem.applications.autolamella' to be distributed and are 2026-07-25T23:13:54,944 already explicitly excluding 'fibsem.applications.autolamella' via 2026-07-25T23:13:54,945 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:54,945 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:54,946 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:54,947 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:54,948 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:54,949 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:54,949 even if it does not contain any `.py` files. 2026-07-25T23:13:54,950 On the other hand, currently there is no concept of package data 2026-07-25T23:13:54,950 directory, all directories are treated like packages. 2026-07-25T23:13:54,951 ******************************************************************************** 2026-07-25T23:13:54,952 !! 2026-07-25T23:13:54,952 check.warn(importable) 2026-07-25T23:13:54,953 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.compat' is absent from the `packages` configuration. 2026-07-25T23:13:54,953 !! 2026-07-25T23:13:54,954 ******************************************************************************** 2026-07-25T23:13:54,954 ############################ 2026-07-25T23:13:54,955 # Package would be ignored # 2026-07-25T23:13:54,955 ############################ 2026-07-25T23:13:54,956 Python recognizes 'fibsem.applications.autolamella.compat' as an importable package[^1], 2026-07-25T23:13:54,956 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:54,957 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:54,958 package, please make sure that 'fibsem.applications.autolamella.compat' is explicitly added 2026-07-25T23:13:54,958 to the `packages` configuration field. 2026-07-25T23:13:54,959 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:54,960 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:54,960 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:54,961 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:54,962 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:54,963 If you don't want 'fibsem.applications.autolamella.compat' to be distributed and are 2026-07-25T23:13:54,964 already explicitly excluding 'fibsem.applications.autolamella.compat' via 2026-07-25T23:13:54,964 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:54,964 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:54,965 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:54,965 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:54,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:54,967 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:54,967 even if it does not contain any `.py` files. 2026-07-25T23:13:54,968 On the other hand, currently there is no concept of package data 2026-07-25T23:13:54,968 directory, all directories are treated like packages. 2026-07-25T23:13:54,968 ******************************************************************************** 2026-07-25T23:13:54,969 !! 2026-07-25T23:13:54,969 check.warn(importable) 2026-07-25T23:13:54,970 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.protocol' is absent from the `packages` configuration. 2026-07-25T23:13:54,970 !! 2026-07-25T23:13:54,971 ******************************************************************************** 2026-07-25T23:13:54,972 ############################ 2026-07-25T23:13:54,972 # Package would be ignored # 2026-07-25T23:13:54,973 ############################ 2026-07-25T23:13:54,973 Python recognizes 'fibsem.applications.autolamella.protocol' as an importable package[^1], 2026-07-25T23:13:54,974 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:54,975 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:54,975 package, please make sure that 'fibsem.applications.autolamella.protocol' is explicitly added 2026-07-25T23:13:54,976 to the `packages` configuration field. 2026-07-25T23:13:54,977 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:54,977 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:54,978 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:54,979 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:54,980 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:54,981 If you don't want 'fibsem.applications.autolamella.protocol' to be distributed and are 2026-07-25T23:13:54,981 already explicitly excluding 'fibsem.applications.autolamella.protocol' via 2026-07-25T23:13:54,982 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:54,982 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:54,982 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:54,983 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:54,984 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:54,986 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:54,987 even if it does not contain any `.py` files. 2026-07-25T23:13:54,987 On the other hand, currently there is no concept of package data 2026-07-25T23:13:54,988 directory, all directories are treated like packages. 2026-07-25T23:13:54,988 ******************************************************************************** 2026-07-25T23:13:54,989 !! 2026-07-25T23:13:54,990 check.warn(importable) 2026-07-25T23:13:54,990 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.protocol.development' is absent from the `packages` configuration. 2026-07-25T23:13:54,990 !! 2026-07-25T23:13:54,991 ******************************************************************************** 2026-07-25T23:13:54,991 ############################ 2026-07-25T23:13:54,992 # Package would be ignored # 2026-07-25T23:13:54,992 ############################ 2026-07-25T23:13:54,992 Python recognizes 'fibsem.applications.autolamella.protocol.development' as an importable package[^1], 2026-07-25T23:13:54,993 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:54,993 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:54,994 package, please make sure that 'fibsem.applications.autolamella.protocol.development' is explicitly added 2026-07-25T23:13:54,994 to the `packages` configuration field. 2026-07-25T23:13:54,995 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:54,995 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:54,996 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:54,996 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:54,997 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:54,998 If you don't want 'fibsem.applications.autolamella.protocol.development' to be distributed and are 2026-07-25T23:13:54,998 already explicitly excluding 'fibsem.applications.autolamella.protocol.development' via 2026-07-25T23:13:54,999 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:54,999 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,000 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,000 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,002 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,003 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,003 even if it does not contain any `.py` files. 2026-07-25T23:13:55,004 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,004 directory, all directories are treated like packages. 2026-07-25T23:13:55,005 ******************************************************************************** 2026-07-25T23:13:55,006 !! 2026-07-25T23:13:55,006 check.warn(importable) 2026-07-25T23:13:55,006 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.protocol.legacy' is absent from the `packages` configuration. 2026-07-25T23:13:55,007 !! 2026-07-25T23:13:55,008 ******************************************************************************** 2026-07-25T23:13:55,008 ############################ 2026-07-25T23:13:55,009 # Package would be ignored # 2026-07-25T23:13:55,009 ############################ 2026-07-25T23:13:55,009 Python recognizes 'fibsem.applications.autolamella.protocol.legacy' as an importable package[^1], 2026-07-25T23:13:55,010 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,011 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,011 package, please make sure that 'fibsem.applications.autolamella.protocol.legacy' is explicitly added 2026-07-25T23:13:55,012 to the `packages` configuration field. 2026-07-25T23:13:55,012 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,013 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,013 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,014 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,014 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,015 If you don't want 'fibsem.applications.autolamella.protocol.legacy' to be distributed and are 2026-07-25T23:13:55,015 already explicitly excluding 'fibsem.applications.autolamella.protocol.legacy' via 2026-07-25T23:13:55,016 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,016 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,016 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,017 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,018 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,019 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,019 even if it does not contain any `.py` files. 2026-07-25T23:13:55,020 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,020 directory, all directories are treated like packages. 2026-07-25T23:13:55,021 ******************************************************************************** 2026-07-25T23:13:55,022 !! 2026-07-25T23:13:55,023 check.warn(importable) 2026-07-25T23:13:55,023 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.tools' is absent from the `packages` configuration. 2026-07-25T23:13:55,023 !! 2026-07-25T23:13:55,025 ******************************************************************************** 2026-07-25T23:13:55,025 ############################ 2026-07-25T23:13:55,026 # Package would be ignored # 2026-07-25T23:13:55,026 ############################ 2026-07-25T23:13:55,027 Python recognizes 'fibsem.applications.autolamella.tools' as an importable package[^1], 2026-07-25T23:13:55,027 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,028 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,028 package, please make sure that 'fibsem.applications.autolamella.tools' is explicitly added 2026-07-25T23:13:55,029 to the `packages` configuration field. 2026-07-25T23:13:55,030 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,030 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,031 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,031 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,032 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,033 If you don't want 'fibsem.applications.autolamella.tools' to be distributed and are 2026-07-25T23:13:55,034 already explicitly excluding 'fibsem.applications.autolamella.tools' via 2026-07-25T23:13:55,034 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,035 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,035 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,036 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,037 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,038 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,038 even if it does not contain any `.py` files. 2026-07-25T23:13:55,038 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,039 directory, all directories are treated like packages. 2026-07-25T23:13:55,039 ******************************************************************************** 2026-07-25T23:13:55,040 !! 2026-07-25T23:13:55,040 check.warn(importable) 2026-07-25T23:13:55,040 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.ui' is absent from the `packages` configuration. 2026-07-25T23:13:55,041 !! 2026-07-25T23:13:55,042 ******************************************************************************** 2026-07-25T23:13:55,042 ############################ 2026-07-25T23:13:55,042 # Package would be ignored # 2026-07-25T23:13:55,043 ############################ 2026-07-25T23:13:55,043 Python recognizes 'fibsem.applications.autolamella.ui' as an importable package[^1], 2026-07-25T23:13:55,043 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,044 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,045 package, please make sure that 'fibsem.applications.autolamella.ui' is explicitly added 2026-07-25T23:13:55,045 to the `packages` configuration field. 2026-07-25T23:13:55,046 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,046 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,047 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,047 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,048 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,049 If you don't want 'fibsem.applications.autolamella.ui' to be distributed and are 2026-07-25T23:13:55,050 already explicitly excluding 'fibsem.applications.autolamella.ui' via 2026-07-25T23:13:55,051 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,051 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,052 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,053 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,054 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,055 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,056 even if it does not contain any `.py` files. 2026-07-25T23:13:55,056 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,057 directory, all directories are treated like packages. 2026-07-25T23:13:55,057 ******************************************************************************** 2026-07-25T23:13:55,058 !! 2026-07-25T23:13:55,058 check.warn(importable) 2026-07-25T23:13:55,059 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.ui.tests' is absent from the `packages` configuration. 2026-07-25T23:13:55,059 !! 2026-07-25T23:13:55,060 ******************************************************************************** 2026-07-25T23:13:55,061 ############################ 2026-07-25T23:13:55,061 # Package would be ignored # 2026-07-25T23:13:55,061 ############################ 2026-07-25T23:13:55,062 Python recognizes 'fibsem.applications.autolamella.ui.tests' as an importable package[^1], 2026-07-25T23:13:55,062 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,062 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,063 package, please make sure that 'fibsem.applications.autolamella.ui.tests' is explicitly added 2026-07-25T23:13:55,063 to the `packages` configuration field. 2026-07-25T23:13:55,064 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,064 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,065 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,065 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,066 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,067 If you don't want 'fibsem.applications.autolamella.ui.tests' to be distributed and are 2026-07-25T23:13:55,067 already explicitly excluding 'fibsem.applications.autolamella.ui.tests' via 2026-07-25T23:13:55,068 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,068 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,068 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,069 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,070 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,071 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,072 even if it does not contain any `.py` files. 2026-07-25T23:13:55,072 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,072 directory, all directories are treated like packages. 2026-07-25T23:13:55,073 ******************************************************************************** 2026-07-25T23:13:55,074 !! 2026-07-25T23:13:55,074 check.warn(importable) 2026-07-25T23:13:55,074 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows' is absent from the `packages` configuration. 2026-07-25T23:13:55,075 !! 2026-07-25T23:13:55,076 ******************************************************************************** 2026-07-25T23:13:55,076 ############################ 2026-07-25T23:13:55,077 # Package would be ignored # 2026-07-25T23:13:55,077 ############################ 2026-07-25T23:13:55,078 Python recognizes 'fibsem.applications.autolamella.workflows' as an importable package[^1], 2026-07-25T23:13:55,078 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,087 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,088 package, please make sure that 'fibsem.applications.autolamella.workflows' is explicitly added 2026-07-25T23:13:55,088 to the `packages` configuration field. 2026-07-25T23:13:55,090 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,090 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,091 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,092 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,092 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,093 If you don't want 'fibsem.applications.autolamella.workflows' to be distributed and are 2026-07-25T23:13:55,093 already explicitly excluding 'fibsem.applications.autolamella.workflows' via 2026-07-25T23:13:55,094 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,094 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,094 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,095 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,096 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,097 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,097 even if it does not contain any `.py` files. 2026-07-25T23:13:55,098 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,098 directory, all directories are treated like packages. 2026-07-25T23:13:55,098 ******************************************************************************** 2026-07-25T23:13:55,099 !! 2026-07-25T23:13:55,100 check.warn(importable) 2026-07-25T23:13:55,100 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows.legacy' is absent from the `packages` configuration. 2026-07-25T23:13:55,101 !! 2026-07-25T23:13:55,101 ******************************************************************************** 2026-07-25T23:13:55,102 ############################ 2026-07-25T23:13:55,102 # Package would be ignored # 2026-07-25T23:13:55,103 ############################ 2026-07-25T23:13:55,103 Python recognizes 'fibsem.applications.autolamella.workflows.legacy' as an importable package[^1], 2026-07-25T23:13:55,104 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,105 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,105 package, please make sure that 'fibsem.applications.autolamella.workflows.legacy' is explicitly added 2026-07-25T23:13:55,105 to the `packages` configuration field. 2026-07-25T23:13:55,106 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,107 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,107 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,108 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,109 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,110 If you don't want 'fibsem.applications.autolamella.workflows.legacy' to be distributed and are 2026-07-25T23:13:55,110 already explicitly excluding 'fibsem.applications.autolamella.workflows.legacy' via 2026-07-25T23:13:55,111 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,111 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,111 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,112 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,113 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,115 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,115 even if it does not contain any `.py` files. 2026-07-25T23:13:55,115 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,116 directory, all directories are treated like packages. 2026-07-25T23:13:55,116 ******************************************************************************** 2026-07-25T23:13:55,117 !! 2026-07-25T23:13:55,117 check.warn(importable) 2026-07-25T23:13:55,117 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.applications.autolamella.workflows.tasks' is absent from the `packages` configuration. 2026-07-25T23:13:55,118 !! 2026-07-25T23:13:55,118 ******************************************************************************** 2026-07-25T23:13:55,119 ############################ 2026-07-25T23:13:55,119 # Package would be ignored # 2026-07-25T23:13:55,119 ############################ 2026-07-25T23:13:55,120 Python recognizes 'fibsem.applications.autolamella.workflows.tasks' as an importable package[^1], 2026-07-25T23:13:55,120 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,121 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,122 package, please make sure that 'fibsem.applications.autolamella.workflows.tasks' is explicitly added 2026-07-25T23:13:55,122 to the `packages` configuration field. 2026-07-25T23:13:55,123 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,123 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,124 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,125 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,126 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,127 If you don't want 'fibsem.applications.autolamella.workflows.tasks' to be distributed and are 2026-07-25T23:13:55,128 already explicitly excluding 'fibsem.applications.autolamella.workflows.tasks' via 2026-07-25T23:13:55,128 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,129 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,129 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,130 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,131 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,132 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,133 even if it does not contain any `.py` files. 2026-07-25T23:13:55,133 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,134 directory, all directories are treated like packages. 2026-07-25T23:13:55,134 ******************************************************************************** 2026-07-25T23:13:55,135 !! 2026-07-25T23:13:55,135 check.warn(importable) 2026-07-25T23:13:55,136 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.autofunctions' is absent from the `packages` configuration. 2026-07-25T23:13:55,136 !! 2026-07-25T23:13:55,137 ******************************************************************************** 2026-07-25T23:13:55,138 ############################ 2026-07-25T23:13:55,138 # Package would be ignored # 2026-07-25T23:13:55,139 ############################ 2026-07-25T23:13:55,139 Python recognizes 'fibsem.autofunctions' as an importable package[^1], 2026-07-25T23:13:55,139 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,140 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,140 package, please make sure that 'fibsem.autofunctions' is explicitly added 2026-07-25T23:13:55,141 to the `packages` configuration field. 2026-07-25T23:13:55,141 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,142 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,142 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,143 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,143 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,144 If you don't want 'fibsem.autofunctions' to be distributed and are 2026-07-25T23:13:55,144 already explicitly excluding 'fibsem.autofunctions' via 2026-07-25T23:13:55,145 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,145 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,146 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,146 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,147 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,149 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,149 even if it does not contain any `.py` files. 2026-07-25T23:13:55,149 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,150 directory, all directories are treated like packages. 2026-07-25T23:13:55,150 ******************************************************************************** 2026-07-25T23:13:55,151 !! 2026-07-25T23:13:55,151 check.warn(importable) 2026-07-25T23:13:55,152 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.chat' is absent from the `packages` configuration. 2026-07-25T23:13:55,152 !! 2026-07-25T23:13:55,153 ******************************************************************************** 2026-07-25T23:13:55,154 ############################ 2026-07-25T23:13:55,154 # Package would be ignored # 2026-07-25T23:13:55,155 ############################ 2026-07-25T23:13:55,155 Python recognizes 'fibsem.chat' as an importable package[^1], 2026-07-25T23:13:55,155 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,156 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,157 package, please make sure that 'fibsem.chat' is explicitly added 2026-07-25T23:13:55,157 to the `packages` configuration field. 2026-07-25T23:13:55,158 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,158 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,159 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,160 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,161 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,162 If you don't want 'fibsem.chat' to be distributed and are 2026-07-25T23:13:55,162 already explicitly excluding 'fibsem.chat' via 2026-07-25T23:13:55,162 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,163 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,163 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,164 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,165 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,166 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,166 even if it does not contain any `.py` files. 2026-07-25T23:13:55,167 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,167 directory, all directories are treated like packages. 2026-07-25T23:13:55,167 ******************************************************************************** 2026-07-25T23:13:55,168 !! 2026-07-25T23:13:55,168 check.warn(importable) 2026-07-25T23:13:55,169 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.config' is absent from the `packages` configuration. 2026-07-25T23:13:55,169 !! 2026-07-25T23:13:55,170 ******************************************************************************** 2026-07-25T23:13:55,170 ############################ 2026-07-25T23:13:55,171 # Package would be ignored # 2026-07-25T23:13:55,171 ############################ 2026-07-25T23:13:55,172 Python recognizes 'fibsem.config' as an importable package[^1], 2026-07-25T23:13:55,172 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,173 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,173 package, please make sure that 'fibsem.config' is explicitly added 2026-07-25T23:13:55,174 to the `packages` configuration field. 2026-07-25T23:13:55,175 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,175 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,175 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,176 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,177 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,178 If you don't want 'fibsem.config' to be distributed and are 2026-07-25T23:13:55,178 already explicitly excluding 'fibsem.config' via 2026-07-25T23:13:55,179 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,179 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,180 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,181 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,182 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,183 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,183 even if it does not contain any `.py` files. 2026-07-25T23:13:55,184 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,184 directory, all directories are treated like packages. 2026-07-25T23:13:55,185 ******************************************************************************** 2026-07-25T23:13:55,186 !! 2026-07-25T23:13:55,186 check.warn(importable) 2026-07-25T23:13:55,187 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.config.fm' is absent from the `packages` configuration. 2026-07-25T23:13:55,187 !! 2026-07-25T23:13:55,188 ******************************************************************************** 2026-07-25T23:13:55,189 ############################ 2026-07-25T23:13:55,189 # Package would be ignored # 2026-07-25T23:13:55,189 ############################ 2026-07-25T23:13:55,190 Python recognizes 'fibsem.config.fm' as an importable package[^1], 2026-07-25T23:13:55,190 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,191 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,191 package, please make sure that 'fibsem.config.fm' is explicitly added 2026-07-25T23:13:55,192 to the `packages` configuration field. 2026-07-25T23:13:55,193 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,193 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,193 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,194 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,195 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,196 If you don't want 'fibsem.config.fm' to be distributed and are 2026-07-25T23:13:55,196 already explicitly excluding 'fibsem.config.fm' via 2026-07-25T23:13:55,196 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,197 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,197 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,198 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,199 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,201 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,201 even if it does not contain any `.py` files. 2026-07-25T23:13:55,202 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,202 directory, all directories are treated like packages. 2026-07-25T23:13:55,202 ******************************************************************************** 2026-07-25T23:13:55,203 !! 2026-07-25T23:13:55,204 check.warn(importable) 2026-07-25T23:13:55,204 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation' is absent from the `packages` configuration. 2026-07-25T23:13:55,205 !! 2026-07-25T23:13:55,206 ******************************************************************************** 2026-07-25T23:13:55,206 ############################ 2026-07-25T23:13:55,207 # Package would be ignored # 2026-07-25T23:13:55,207 ############################ 2026-07-25T23:13:55,207 Python recognizes 'fibsem.correlation' as an importable package[^1], 2026-07-25T23:13:55,208 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,209 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,209 package, please make sure that 'fibsem.correlation' is explicitly added 2026-07-25T23:13:55,210 to the `packages` configuration field. 2026-07-25T23:13:55,211 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,211 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,212 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,213 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,214 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,215 If you don't want 'fibsem.correlation' to be distributed and are 2026-07-25T23:13:55,215 already explicitly excluding 'fibsem.correlation' via 2026-07-25T23:13:55,215 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,215 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,216 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,217 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,217 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,218 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,219 even if it does not contain any `.py` files. 2026-07-25T23:13:55,219 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,219 directory, all directories are treated like packages. 2026-07-25T23:13:55,220 ******************************************************************************** 2026-07-25T23:13:55,221 !! 2026-07-25T23:13:55,221 check.warn(importable) 2026-07-25T23:13:55,221 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.pyto' is absent from the `packages` configuration. 2026-07-25T23:13:55,222 !! 2026-07-25T23:13:55,223 ******************************************************************************** 2026-07-25T23:13:55,223 ############################ 2026-07-25T23:13:55,223 # Package would be ignored # 2026-07-25T23:13:55,224 ############################ 2026-07-25T23:13:55,224 Python recognizes 'fibsem.correlation.pyto' as an importable package[^1], 2026-07-25T23:13:55,225 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,226 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,226 package, please make sure that 'fibsem.correlation.pyto' is explicitly added 2026-07-25T23:13:55,227 to the `packages` configuration field. 2026-07-25T23:13:55,228 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,228 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,229 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,230 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,231 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,232 If you don't want 'fibsem.correlation.pyto' to be distributed and are 2026-07-25T23:13:55,232 already explicitly excluding 'fibsem.correlation.pyto' via 2026-07-25T23:13:55,233 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,233 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,233 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,234 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,235 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,237 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,238 even if it does not contain any `.py` files. 2026-07-25T23:13:55,238 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,239 directory, all directories are treated like packages. 2026-07-25T23:13:55,239 ******************************************************************************** 2026-07-25T23:13:55,240 !! 2026-07-25T23:13:55,240 check.warn(importable) 2026-07-25T23:13:55,241 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.pyto.test' is absent from the `packages` configuration. 2026-07-25T23:13:55,241 !! 2026-07-25T23:13:55,242 ******************************************************************************** 2026-07-25T23:13:55,242 ############################ 2026-07-25T23:13:55,242 # Package would be ignored # 2026-07-25T23:13:55,243 ############################ 2026-07-25T23:13:55,243 Python recognizes 'fibsem.correlation.pyto.test' as an importable package[^1], 2026-07-25T23:13:55,243 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,244 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,244 package, please make sure that 'fibsem.correlation.pyto.test' is explicitly added 2026-07-25T23:13:55,245 to the `packages` configuration field. 2026-07-25T23:13:55,245 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,246 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,247 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,248 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,249 If you don't want 'fibsem.correlation.pyto.test' to be distributed and are 2026-07-25T23:13:55,249 already explicitly excluding 'fibsem.correlation.pyto.test' via 2026-07-25T23:13:55,250 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,250 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,251 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,252 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,253 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,254 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,255 even if it does not contain any `.py` files. 2026-07-25T23:13:55,255 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,256 directory, all directories are treated like packages. 2026-07-25T23:13:55,256 ******************************************************************************** 2026-07-25T23:13:55,257 !! 2026-07-25T23:13:55,257 check.warn(importable) 2026-07-25T23:13:55,258 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.tests' is absent from the `packages` configuration. 2026-07-25T23:13:55,258 !! 2026-07-25T23:13:55,259 ******************************************************************************** 2026-07-25T23:13:55,260 ############################ 2026-07-25T23:13:55,260 # Package would be ignored # 2026-07-25T23:13:55,261 ############################ 2026-07-25T23:13:55,261 Python recognizes 'fibsem.correlation.tests' as an importable package[^1], 2026-07-25T23:13:55,262 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,263 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,263 package, please make sure that 'fibsem.correlation.tests' is explicitly added 2026-07-25T23:13:55,264 to the `packages` configuration field. 2026-07-25T23:13:55,265 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,265 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,265 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,266 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,267 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,267 If you don't want 'fibsem.correlation.tests' to be distributed and are 2026-07-25T23:13:55,268 already explicitly excluding 'fibsem.correlation.tests' via 2026-07-25T23:13:55,268 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,269 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,269 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,270 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,271 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,272 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,272 even if it does not contain any `.py` files. 2026-07-25T23:13:55,272 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,273 directory, all directories are treated like packages. 2026-07-25T23:13:55,273 ******************************************************************************** 2026-07-25T23:13:55,274 !! 2026-07-25T23:13:55,275 check.warn(importable) 2026-07-25T23:13:55,275 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.ui' is absent from the `packages` configuration. 2026-07-25T23:13:55,276 !! 2026-07-25T23:13:55,277 ******************************************************************************** 2026-07-25T23:13:55,277 ############################ 2026-07-25T23:13:55,278 # Package would be ignored # 2026-07-25T23:13:55,278 ############################ 2026-07-25T23:13:55,279 Python recognizes 'fibsem.correlation.ui' as an importable package[^1], 2026-07-25T23:13:55,279 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,280 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,281 package, please make sure that 'fibsem.correlation.ui' is explicitly added 2026-07-25T23:13:55,281 to the `packages` configuration field. 2026-07-25T23:13:55,282 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,283 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,283 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,284 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,285 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,286 If you don't want 'fibsem.correlation.ui' to be distributed and are 2026-07-25T23:13:55,287 already explicitly excluding 'fibsem.correlation.ui' via 2026-07-25T23:13:55,287 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,288 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,288 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,289 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,290 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,291 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,292 even if it does not contain any `.py` files. 2026-07-25T23:13:55,292 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,292 directory, all directories are treated like packages. 2026-07-25T23:13:55,293 ******************************************************************************** 2026-07-25T23:13:55,294 !! 2026-07-25T23:13:55,294 check.warn(importable) 2026-07-25T23:13:55,294 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.correlation.ui.widgets' is absent from the `packages` configuration. 2026-07-25T23:13:55,294 !! 2026-07-25T23:13:55,295 ******************************************************************************** 2026-07-25T23:13:55,296 ############################ 2026-07-25T23:13:55,296 # Package would be ignored # 2026-07-25T23:13:55,296 ############################ 2026-07-25T23:13:55,297 Python recognizes 'fibsem.correlation.ui.widgets' as an importable package[^1], 2026-07-25T23:13:55,297 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,298 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,298 package, please make sure that 'fibsem.correlation.ui.widgets' is explicitly added 2026-07-25T23:13:55,299 to the `packages` configuration field. 2026-07-25T23:13:55,300 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,300 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,301 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,302 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,303 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,304 If you don't want 'fibsem.correlation.ui.widgets' to be distributed and are 2026-07-25T23:13:55,304 already explicitly excluding 'fibsem.correlation.ui.widgets' via 2026-07-25T23:13:55,305 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,305 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,306 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,307 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,308 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,309 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,310 even if it does not contain any `.py` files. 2026-07-25T23:13:55,310 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,311 directory, all directories are treated like packages. 2026-07-25T23:13:55,311 ******************************************************************************** 2026-07-25T23:13:55,312 !! 2026-07-25T23:13:55,313 check.warn(importable) 2026-07-25T23:13:55,313 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection' is absent from the `packages` configuration. 2026-07-25T23:13:55,314 !! 2026-07-25T23:13:55,315 ******************************************************************************** 2026-07-25T23:13:55,315 ############################ 2026-07-25T23:13:55,316 # Package would be ignored # 2026-07-25T23:13:55,316 ############################ 2026-07-25T23:13:55,317 Python recognizes 'fibsem.detection' as an importable package[^1], 2026-07-25T23:13:55,317 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,318 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,318 package, please make sure that 'fibsem.detection' is explicitly added 2026-07-25T23:13:55,318 to the `packages` configuration field. 2026-07-25T23:13:55,319 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,319 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,320 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,320 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,321 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,322 If you don't want 'fibsem.detection' to be distributed and are 2026-07-25T23:13:55,322 already explicitly excluding 'fibsem.detection' via 2026-07-25T23:13:55,323 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,323 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,323 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,324 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,325 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,327 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,327 even if it does not contain any `.py` files. 2026-07-25T23:13:55,328 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,328 directory, all directories are treated like packages. 2026-07-25T23:13:55,328 ******************************************************************************** 2026-07-25T23:13:55,329 !! 2026-07-25T23:13:55,330 check.warn(importable) 2026-07-25T23:13:55,330 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection.test_images' is absent from the `packages` configuration. 2026-07-25T23:13:55,331 !! 2026-07-25T23:13:55,332 ******************************************************************************** 2026-07-25T23:13:55,333 ############################ 2026-07-25T23:13:55,333 # Package would be ignored # 2026-07-25T23:13:55,334 ############################ 2026-07-25T23:13:55,334 Python recognizes 'fibsem.detection.test_images' as an importable package[^1], 2026-07-25T23:13:55,335 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,336 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,336 package, please make sure that 'fibsem.detection.test_images' is explicitly added 2026-07-25T23:13:55,337 to the `packages` configuration field. 2026-07-25T23:13:55,338 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,338 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,339 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,340 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,341 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,342 If you don't want 'fibsem.detection.test_images' to be distributed and are 2026-07-25T23:13:55,342 already explicitly excluding 'fibsem.detection.test_images' via 2026-07-25T23:13:55,343 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,343 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,344 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,345 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,345 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,346 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,347 even if it does not contain any `.py` files. 2026-07-25T23:13:55,347 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,347 directory, all directories are treated like packages. 2026-07-25T23:13:55,348 ******************************************************************************** 2026-07-25T23:13:55,348 !! 2026-07-25T23:13:55,349 check.warn(importable) 2026-07-25T23:13:55,349 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.detection.test_images.serial' is absent from the `packages` configuration. 2026-07-25T23:13:55,350 !! 2026-07-25T23:13:55,350 ******************************************************************************** 2026-07-25T23:13:55,351 ############################ 2026-07-25T23:13:55,351 # Package would be ignored # 2026-07-25T23:13:55,351 ############################ 2026-07-25T23:13:55,352 Python recognizes 'fibsem.detection.test_images.serial' as an importable package[^1], 2026-07-25T23:13:55,352 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,353 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,354 package, please make sure that 'fibsem.detection.test_images.serial' is explicitly added 2026-07-25T23:13:55,354 to the `packages` configuration field. 2026-07-25T23:13:55,355 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,356 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,356 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,357 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,358 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,359 If you don't want 'fibsem.detection.test_images.serial' to be distributed and are 2026-07-25T23:13:55,360 already explicitly excluding 'fibsem.detection.test_images.serial' via 2026-07-25T23:13:55,360 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,360 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,361 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,362 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,363 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,364 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,365 even if it does not contain any `.py` files. 2026-07-25T23:13:55,365 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,366 directory, all directories are treated like packages. 2026-07-25T23:13:55,366 ******************************************************************************** 2026-07-25T23:13:55,368 !! 2026-07-25T23:13:55,368 check.warn(importable) 2026-07-25T23:13:55,368 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.fm' is absent from the `packages` configuration. 2026-07-25T23:13:55,369 !! 2026-07-25T23:13:55,369 ******************************************************************************** 2026-07-25T23:13:55,370 ############################ 2026-07-25T23:13:55,370 # Package would be ignored # 2026-07-25T23:13:55,370 ############################ 2026-07-25T23:13:55,371 Python recognizes 'fibsem.fm' as an importable package[^1], 2026-07-25T23:13:55,371 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,372 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,372 package, please make sure that 'fibsem.fm' is explicitly added 2026-07-25T23:13:55,372 to the `packages` configuration field. 2026-07-25T23:13:55,373 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,374 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,374 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,375 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,376 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,376 If you don't want 'fibsem.fm' to be distributed and are 2026-07-25T23:13:55,377 already explicitly excluding 'fibsem.fm' via 2026-07-25T23:13:55,377 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,378 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,378 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,380 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,381 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,382 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,383 even if it does not contain any `.py` files. 2026-07-25T23:13:55,383 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,384 directory, all directories are treated like packages. 2026-07-25T23:13:55,384 ******************************************************************************** 2026-07-25T23:13:55,386 !! 2026-07-25T23:13:55,386 check.warn(importable) 2026-07-25T23:13:55,387 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.fm.calibration' is absent from the `packages` configuration. 2026-07-25T23:13:55,387 !! 2026-07-25T23:13:55,388 ******************************************************************************** 2026-07-25T23:13:55,388 ############################ 2026-07-25T23:13:55,389 # Package would be ignored # 2026-07-25T23:13:55,389 ############################ 2026-07-25T23:13:55,390 Python recognizes 'fibsem.fm.calibration' as an importable package[^1], 2026-07-25T23:13:55,390 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,391 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,392 package, please make sure that 'fibsem.fm.calibration' is explicitly added 2026-07-25T23:13:55,393 to the `packages` configuration field. 2026-07-25T23:13:55,394 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,394 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,395 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,396 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,397 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,397 If you don't want 'fibsem.fm.calibration' to be distributed and are 2026-07-25T23:13:55,398 already explicitly excluding 'fibsem.fm.calibration' via 2026-07-25T23:13:55,398 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,398 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,399 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,399 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,400 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,401 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,402 even if it does not contain any `.py` files. 2026-07-25T23:13:55,402 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,402 directory, all directories are treated like packages. 2026-07-25T23:13:55,403 ******************************************************************************** 2026-07-25T23:13:55,404 !! 2026-07-25T23:13:55,404 check.warn(importable) 2026-07-25T23:13:55,405 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.imaging' is absent from the `packages` configuration. 2026-07-25T23:13:55,405 !! 2026-07-25T23:13:55,407 ******************************************************************************** 2026-07-25T23:13:55,407 ############################ 2026-07-25T23:13:55,408 # Package would be ignored # 2026-07-25T23:13:55,408 ############################ 2026-07-25T23:13:55,409 Python recognizes 'fibsem.imaging' as an importable package[^1], 2026-07-25T23:13:55,409 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,410 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,411 package, please make sure that 'fibsem.imaging' is explicitly added 2026-07-25T23:13:55,412 to the `packages` configuration field. 2026-07-25T23:13:55,413 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,413 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,414 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,415 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,416 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,416 If you don't want 'fibsem.imaging' to be distributed and are 2026-07-25T23:13:55,417 already explicitly excluding 'fibsem.imaging' via 2026-07-25T23:13:55,417 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,418 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,418 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,419 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,420 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,422 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,423 even if it does not contain any `.py` files. 2026-07-25T23:13:55,423 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,424 directory, all directories are treated like packages. 2026-07-25T23:13:55,424 ******************************************************************************** 2026-07-25T23:13:55,425 !! 2026-07-25T23:13:55,425 check.warn(importable) 2026-07-25T23:13:55,426 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.imaging.tests' is absent from the `packages` configuration. 2026-07-25T23:13:55,426 !! 2026-07-25T23:13:55,427 ******************************************************************************** 2026-07-25T23:13:55,427 ############################ 2026-07-25T23:13:55,428 # Package would be ignored # 2026-07-25T23:13:55,428 ############################ 2026-07-25T23:13:55,428 Python recognizes 'fibsem.imaging.tests' as an importable package[^1], 2026-07-25T23:13:55,429 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,430 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,430 package, please make sure that 'fibsem.imaging.tests' is explicitly added 2026-07-25T23:13:55,430 to the `packages` configuration field. 2026-07-25T23:13:55,431 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,431 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,432 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,433 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,434 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,435 If you don't want 'fibsem.imaging.tests' to be distributed and are 2026-07-25T23:13:55,435 already explicitly excluding 'fibsem.imaging.tests' via 2026-07-25T23:13:55,436 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,436 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,437 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,438 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,439 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,441 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,441 even if it does not contain any `.py` files. 2026-07-25T23:13:55,442 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,443 directory, all directories are treated like packages. 2026-07-25T23:13:55,443 ******************************************************************************** 2026-07-25T23:13:55,444 !! 2026-07-25T23:13:55,444 check.warn(importable) 2026-07-25T23:13:55,445 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.microscopes' is absent from the `packages` configuration. 2026-07-25T23:13:55,445 !! 2026-07-25T23:13:55,446 ******************************************************************************** 2026-07-25T23:13:55,447 ############################ 2026-07-25T23:13:55,447 # Package would be ignored # 2026-07-25T23:13:55,448 ############################ 2026-07-25T23:13:55,448 Python recognizes 'fibsem.microscopes' as an importable package[^1], 2026-07-25T23:13:55,449 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,450 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,451 package, please make sure that 'fibsem.microscopes' is explicitly added 2026-07-25T23:13:55,452 to the `packages` configuration field. 2026-07-25T23:13:55,452 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,453 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,453 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,454 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,455 If you don't want 'fibsem.microscopes' to be distributed and are 2026-07-25T23:13:55,456 already explicitly excluding 'fibsem.microscopes' via 2026-07-25T23:13:55,456 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,456 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,457 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,458 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,458 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,459 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,460 even if it does not contain any `.py` files. 2026-07-25T23:13:55,460 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,461 directory, all directories are treated like packages. 2026-07-25T23:13:55,461 ******************************************************************************** 2026-07-25T23:13:55,462 !! 2026-07-25T23:13:55,463 check.warn(importable) 2026-07-25T23:13:55,463 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling' is absent from the `packages` configuration. 2026-07-25T23:13:55,464 !! 2026-07-25T23:13:55,465 ******************************************************************************** 2026-07-25T23:13:55,465 ############################ 2026-07-25T23:13:55,466 # Package would be ignored # 2026-07-25T23:13:55,467 ############################ 2026-07-25T23:13:55,467 Python recognizes 'fibsem.milling' as an importable package[^1], 2026-07-25T23:13:55,468 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,469 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,470 package, please make sure that 'fibsem.milling' is explicitly added 2026-07-25T23:13:55,470 to the `packages` configuration field. 2026-07-25T23:13:55,471 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,471 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,472 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,473 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,474 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,475 If you don't want 'fibsem.milling' to be distributed and are 2026-07-25T23:13:55,475 already explicitly excluding 'fibsem.milling' via 2026-07-25T23:13:55,476 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,477 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,477 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,478 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,480 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,481 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,481 even if it does not contain any `.py` files. 2026-07-25T23:13:55,481 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,482 directory, all directories are treated like packages. 2026-07-25T23:13:55,482 ******************************************************************************** 2026-07-25T23:13:55,483 !! 2026-07-25T23:13:55,483 check.warn(importable) 2026-07-25T23:13:55,484 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling.patterning' is absent from the `packages` configuration. 2026-07-25T23:13:55,484 !! 2026-07-25T23:13:55,485 ******************************************************************************** 2026-07-25T23:13:55,486 ############################ 2026-07-25T23:13:55,486 # Package would be ignored # 2026-07-25T23:13:55,487 ############################ 2026-07-25T23:13:55,487 Python recognizes 'fibsem.milling.patterning' as an importable package[^1], 2026-07-25T23:13:55,488 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,489 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,490 package, please make sure that 'fibsem.milling.patterning' is explicitly added 2026-07-25T23:13:55,490 to the `packages` configuration field. 2026-07-25T23:13:55,491 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,492 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,493 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,494 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,495 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,496 If you don't want 'fibsem.milling.patterning' to be distributed and are 2026-07-25T23:13:55,496 already explicitly excluding 'fibsem.milling.patterning' via 2026-07-25T23:13:55,497 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,498 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,498 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,499 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,500 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,502 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,502 even if it does not contain any `.py` files. 2026-07-25T23:13:55,503 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,503 directory, all directories are treated like packages. 2026-07-25T23:13:55,504 ******************************************************************************** 2026-07-25T23:13:55,505 !! 2026-07-25T23:13:55,505 check.warn(importable) 2026-07-25T23:13:55,506 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.milling.strategy' is absent from the `packages` configuration. 2026-07-25T23:13:55,506 !! 2026-07-25T23:13:55,507 ******************************************************************************** 2026-07-25T23:13:55,508 ############################ 2026-07-25T23:13:55,509 # Package would be ignored # 2026-07-25T23:13:55,509 ############################ 2026-07-25T23:13:55,510 Python recognizes 'fibsem.milling.strategy' as an importable package[^1], 2026-07-25T23:13:55,510 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,511 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,511 package, please make sure that 'fibsem.milling.strategy' is explicitly added 2026-07-25T23:13:55,512 to the `packages` configuration field. 2026-07-25T23:13:55,512 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,513 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,513 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,514 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,515 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,516 If you don't want 'fibsem.milling.strategy' to be distributed and are 2026-07-25T23:13:55,516 already explicitly excluding 'fibsem.milling.strategy' via 2026-07-25T23:13:55,517 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,517 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,518 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,519 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,520 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,522 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,522 even if it does not contain any `.py` files. 2026-07-25T23:13:55,523 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,523 directory, all directories are treated like packages. 2026-07-25T23:13:55,524 ******************************************************************************** 2026-07-25T23:13:55,525 !! 2026-07-25T23:13:55,525 check.warn(importable) 2026-07-25T23:13:55,526 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation' is absent from the `packages` configuration. 2026-07-25T23:13:55,526 !! 2026-07-25T23:13:55,527 ******************************************************************************** 2026-07-25T23:13:55,528 ############################ 2026-07-25T23:13:55,528 # Package would be ignored # 2026-07-25T23:13:55,529 ############################ 2026-07-25T23:13:55,529 Python recognizes 'fibsem.segmentation' as an importable package[^1], 2026-07-25T23:13:55,530 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,531 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,531 package, please make sure that 'fibsem.segmentation' is explicitly added 2026-07-25T23:13:55,532 to the `packages` configuration field. 2026-07-25T23:13:55,533 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,534 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,534 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,535 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,536 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,537 If you don't want 'fibsem.segmentation' to be distributed and are 2026-07-25T23:13:55,538 already explicitly excluding 'fibsem.segmentation' via 2026-07-25T23:13:55,539 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,539 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,540 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,541 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,542 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,544 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,544 even if it does not contain any `.py` files. 2026-07-25T23:13:55,545 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,545 directory, all directories are treated like packages. 2026-07-25T23:13:55,545 ******************************************************************************** 2026-07-25T23:13:55,546 !! 2026-07-25T23:13:55,547 check.warn(importable) 2026-07-25T23:13:55,547 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs' is absent from the `packages` configuration. 2026-07-25T23:13:55,548 !! 2026-07-25T23:13:55,549 ******************************************************************************** 2026-07-25T23:13:55,549 ############################ 2026-07-25T23:13:55,550 # Package would be ignored # 2026-07-25T23:13:55,550 ############################ 2026-07-25T23:13:55,551 Python recognizes 'fibsem.segmentation.docs' as an importable package[^1], 2026-07-25T23:13:55,551 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,552 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,552 package, please make sure that 'fibsem.segmentation.docs' is explicitly added 2026-07-25T23:13:55,553 to the `packages` configuration field. 2026-07-25T23:13:55,554 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,554 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,555 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,556 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,557 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,558 If you don't want 'fibsem.segmentation.docs' to be distributed and are 2026-07-25T23:13:55,558 already explicitly excluding 'fibsem.segmentation.docs' via 2026-07-25T23:13:55,559 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,559 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,560 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,561 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,562 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,564 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,564 even if it does not contain any `.py` files. 2026-07-25T23:13:55,565 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,565 directory, all directories are treated like packages. 2026-07-25T23:13:55,566 ******************************************************************************** 2026-07-25T23:13:55,567 !! 2026-07-25T23:13:55,568 check.warn(importable) 2026-07-25T23:13:55,568 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.combined' is absent from the `packages` configuration. 2026-07-25T23:13:55,569 !! 2026-07-25T23:13:55,570 ******************************************************************************** 2026-07-25T23:13:55,570 ############################ 2026-07-25T23:13:55,571 # Package would be ignored # 2026-07-25T23:13:55,571 ############################ 2026-07-25T23:13:55,572 Python recognizes 'fibsem.segmentation.docs.imgs.combined' as an importable package[^1], 2026-07-25T23:13:55,572 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,573 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,574 package, please make sure that 'fibsem.segmentation.docs.imgs.combined' is explicitly added 2026-07-25T23:13:55,574 to the `packages` configuration field. 2026-07-25T23:13:55,575 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,575 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,576 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,577 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,578 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,579 If you don't want 'fibsem.segmentation.docs.imgs.combined' to be distributed and are 2026-07-25T23:13:55,579 already explicitly excluding 'fibsem.segmentation.docs.imgs.combined' via 2026-07-25T23:13:55,580 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,580 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,581 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,582 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,582 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,584 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,584 even if it does not contain any `.py` files. 2026-07-25T23:13:55,585 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,585 directory, all directories are treated like packages. 2026-07-25T23:13:55,586 ******************************************************************************** 2026-07-25T23:13:55,587 !! 2026-07-25T23:13:55,588 check.warn(importable) 2026-07-25T23:13:55,588 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.labelled' is absent from the `packages` configuration. 2026-07-25T23:13:55,589 !! 2026-07-25T23:13:55,590 ******************************************************************************** 2026-07-25T23:13:55,590 ############################ 2026-07-25T23:13:55,591 # Package would be ignored # 2026-07-25T23:13:55,591 ############################ 2026-07-25T23:13:55,592 Python recognizes 'fibsem.segmentation.docs.imgs.labelled' as an importable package[^1], 2026-07-25T23:13:55,593 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,594 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,594 package, please make sure that 'fibsem.segmentation.docs.imgs.labelled' is explicitly added 2026-07-25T23:13:55,595 to the `packages` configuration field. 2026-07-25T23:13:55,596 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,597 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,598 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,598 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,599 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,600 If you don't want 'fibsem.segmentation.docs.imgs.labelled' to be distributed and are 2026-07-25T23:13:55,601 already explicitly excluding 'fibsem.segmentation.docs.imgs.labelled' via 2026-07-25T23:13:55,601 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,602 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,602 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,603 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,604 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,606 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,607 even if it does not contain any `.py` files. 2026-07-25T23:13:55,607 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,608 directory, all directories are treated like packages. 2026-07-25T23:13:55,608 ******************************************************************************** 2026-07-25T23:13:55,609 !! 2026-07-25T23:13:55,610 check.warn(importable) 2026-07-25T23:13:55,610 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.docs.imgs.raw' is absent from the `packages` configuration. 2026-07-25T23:13:55,611 !! 2026-07-25T23:13:55,613 ******************************************************************************** 2026-07-25T23:13:55,613 ############################ 2026-07-25T23:13:55,614 # Package would be ignored # 2026-07-25T23:13:55,615 ############################ 2026-07-25T23:13:55,615 Python recognizes 'fibsem.segmentation.docs.imgs.raw' as an importable package[^1], 2026-07-25T23:13:55,616 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,617 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,617 package, please make sure that 'fibsem.segmentation.docs.imgs.raw' is explicitly added 2026-07-25T23:13:55,618 to the `packages` configuration field. 2026-07-25T23:13:55,619 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,620 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,620 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,621 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,622 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,623 If you don't want 'fibsem.segmentation.docs.imgs.raw' to be distributed and are 2026-07-25T23:13:55,624 already explicitly excluding 'fibsem.segmentation.docs.imgs.raw' via 2026-07-25T23:13:55,625 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,625 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,626 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,627 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,629 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,630 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,631 even if it does not contain any `.py` files. 2026-07-25T23:13:55,631 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,631 directory, all directories are treated like packages. 2026-07-25T23:13:55,632 ******************************************************************************** 2026-07-25T23:13:55,634 !! 2026-07-25T23:13:55,634 check.warn(importable) 2026-07-25T23:13:55,634 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.segmentation.models' is absent from the `packages` configuration. 2026-07-25T23:13:55,635 !! 2026-07-25T23:13:55,636 ******************************************************************************** 2026-07-25T23:13:55,636 ############################ 2026-07-25T23:13:55,637 # Package would be ignored # 2026-07-25T23:13:55,637 ############################ 2026-07-25T23:13:55,638 Python recognizes 'fibsem.segmentation.models' as an importable package[^1], 2026-07-25T23:13:55,638 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,639 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,640 package, please make sure that 'fibsem.segmentation.models' is explicitly added 2026-07-25T23:13:55,640 to the `packages` configuration field. 2026-07-25T23:13:55,641 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,642 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,642 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,643 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,645 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,646 If you don't want 'fibsem.segmentation.models' to be distributed and are 2026-07-25T23:13:55,647 already explicitly excluding 'fibsem.segmentation.models' via 2026-07-25T23:13:55,647 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,648 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,648 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,649 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,650 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,652 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,653 even if it does not contain any `.py` files. 2026-07-25T23:13:55,653 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,654 directory, all directories are treated like packages. 2026-07-25T23:13:55,654 ******************************************************************************** 2026-07-25T23:13:55,656 !! 2026-07-25T23:13:55,656 check.warn(importable) 2026-07-25T23:13:55,657 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.server' is absent from the `packages` configuration. 2026-07-25T23:13:55,658 !! 2026-07-25T23:13:55,659 ******************************************************************************** 2026-07-25T23:13:55,659 ############################ 2026-07-25T23:13:55,660 # Package would be ignored # 2026-07-25T23:13:55,660 ############################ 2026-07-25T23:13:55,661 Python recognizes 'fibsem.server' as an importable package[^1], 2026-07-25T23:13:55,662 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,663 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,663 package, please make sure that 'fibsem.server' is explicitly added 2026-07-25T23:13:55,664 to the `packages` configuration field. 2026-07-25T23:13:55,664 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,665 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,665 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,666 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,667 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,668 If you don't want 'fibsem.server' to be distributed and are 2026-07-25T23:13:55,669 already explicitly excluding 'fibsem.server' via 2026-07-25T23:13:55,669 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,670 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,670 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,671 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,672 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,674 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,674 even if it does not contain any `.py` files. 2026-07-25T23:13:55,675 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,675 directory, all directories are treated like packages. 2026-07-25T23:13:55,676 ******************************************************************************** 2026-07-25T23:13:55,677 !! 2026-07-25T23:13:55,677 check.warn(importable) 2026-07-25T23:13:55,678 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.tools' is absent from the `packages` configuration. 2026-07-25T23:13:55,678 !! 2026-07-25T23:13:55,679 ******************************************************************************** 2026-07-25T23:13:55,680 ############################ 2026-07-25T23:13:55,681 # Package would be ignored # 2026-07-25T23:13:55,681 ############################ 2026-07-25T23:13:55,682 Python recognizes 'fibsem.tools' as an importable package[^1], 2026-07-25T23:13:55,682 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,683 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,684 package, please make sure that 'fibsem.tools' is explicitly added 2026-07-25T23:13:55,684 to the `packages` configuration field. 2026-07-25T23:13:55,685 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,686 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,687 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,688 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,689 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,690 If you don't want 'fibsem.tools' to be distributed and are 2026-07-25T23:13:55,690 already explicitly excluding 'fibsem.tools' via 2026-07-25T23:13:55,691 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,692 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,692 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,693 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,694 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,696 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,697 even if it does not contain any `.py` files. 2026-07-25T23:13:55,697 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,698 directory, all directories are treated like packages. 2026-07-25T23:13:55,698 ******************************************************************************** 2026-07-25T23:13:55,699 !! 2026-07-25T23:13:55,700 check.warn(importable) 2026-07-25T23:13:55,700 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui' is absent from the `packages` configuration. 2026-07-25T23:13:55,701 !! 2026-07-25T23:13:55,702 ******************************************************************************** 2026-07-25T23:13:55,702 ############################ 2026-07-25T23:13:55,703 # Package would be ignored # 2026-07-25T23:13:55,703 ############################ 2026-07-25T23:13:55,704 Python recognizes 'fibsem.ui' as an importable package[^1], 2026-07-25T23:13:55,704 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,705 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,706 package, please make sure that 'fibsem.ui' is explicitly added 2026-07-25T23:13:55,706 to the `packages` configuration field. 2026-07-25T23:13:55,707 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,708 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,708 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,709 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,710 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,711 If you don't want 'fibsem.ui' to be distributed and are 2026-07-25T23:13:55,712 already explicitly excluding 'fibsem.ui' via 2026-07-25T23:13:55,712 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,713 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,713 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,714 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,716 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,717 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,718 even if it does not contain any `.py` files. 2026-07-25T23:13:55,718 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,719 directory, all directories are treated like packages. 2026-07-25T23:13:55,719 ******************************************************************************** 2026-07-25T23:13:55,720 !! 2026-07-25T23:13:55,721 check.warn(importable) 2026-07-25T23:13:55,721 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.fm.widgets' is absent from the `packages` configuration. 2026-07-25T23:13:55,722 !! 2026-07-25T23:13:55,723 ******************************************************************************** 2026-07-25T23:13:55,724 ############################ 2026-07-25T23:13:55,724 # Package would be ignored # 2026-07-25T23:13:55,725 ############################ 2026-07-25T23:13:55,725 Python recognizes 'fibsem.ui.fm.widgets' as an importable package[^1], 2026-07-25T23:13:55,725 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,726 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,727 package, please make sure that 'fibsem.ui.fm.widgets' is explicitly added 2026-07-25T23:13:55,727 to the `packages` configuration field. 2026-07-25T23:13:55,728 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,729 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,729 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,730 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,731 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,732 If you don't want 'fibsem.ui.fm.widgets' to be distributed and are 2026-07-25T23:13:55,732 already explicitly excluding 'fibsem.ui.fm.widgets' via 2026-07-25T23:13:55,733 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,733 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,734 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,735 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,736 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,737 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,738 even if it does not contain any `.py` files. 2026-07-25T23:13:55,739 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,739 directory, all directories are treated like packages. 2026-07-25T23:13:55,740 ******************************************************************************** 2026-07-25T23:13:55,741 !! 2026-07-25T23:13:55,741 check.warn(importable) 2026-07-25T23:13:55,742 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.icons' is absent from the `packages` configuration. 2026-07-25T23:13:55,742 !! 2026-07-25T23:13:55,743 ******************************************************************************** 2026-07-25T23:13:55,744 ############################ 2026-07-25T23:13:55,744 # Package would be ignored # 2026-07-25T23:13:55,745 ############################ 2026-07-25T23:13:55,745 Python recognizes 'fibsem.ui.icons' as an importable package[^1], 2026-07-25T23:13:55,746 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,747 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,748 package, please make sure that 'fibsem.ui.icons' is explicitly added 2026-07-25T23:13:55,748 to the `packages` configuration field. 2026-07-25T23:13:55,750 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,750 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,751 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,752 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,753 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,754 If you don't want 'fibsem.ui.icons' to be distributed and are 2026-07-25T23:13:55,755 already explicitly excluding 'fibsem.ui.icons' via 2026-07-25T23:13:55,755 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,755 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,756 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,757 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,758 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,759 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,760 even if it does not contain any `.py` files. 2026-07-25T23:13:55,760 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,761 directory, all directories are treated like packages. 2026-07-25T23:13:55,761 ******************************************************************************** 2026-07-25T23:13:55,762 !! 2026-07-25T23:13:55,762 check.warn(importable) 2026-07-25T23:13:55,763 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.napari' is absent from the `packages` configuration. 2026-07-25T23:13:55,763 !! 2026-07-25T23:13:55,764 ******************************************************************************** 2026-07-25T23:13:55,765 ############################ 2026-07-25T23:13:55,765 # Package would be ignored # 2026-07-25T23:13:55,766 ############################ 2026-07-25T23:13:55,766 Python recognizes 'fibsem.ui.napari' as an importable package[^1], 2026-07-25T23:13:55,767 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,768 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,769 package, please make sure that 'fibsem.ui.napari' is explicitly added 2026-07-25T23:13:55,769 to the `packages` configuration field. 2026-07-25T23:13:55,770 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,771 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,771 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,772 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,773 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,774 If you don't want 'fibsem.ui.napari' to be distributed and are 2026-07-25T23:13:55,775 already explicitly excluding 'fibsem.ui.napari' via 2026-07-25T23:13:55,775 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,776 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,776 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,777 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,778 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,780 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,781 even if it does not contain any `.py` files. 2026-07-25T23:13:55,781 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,782 directory, all directories are treated like packages. 2026-07-25T23:13:55,782 ******************************************************************************** 2026-07-25T23:13:55,783 !! 2026-07-25T23:13:55,784 check.warn(importable) 2026-07-25T23:13:55,784 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.qt' is absent from the `packages` configuration. 2026-07-25T23:13:55,785 !! 2026-07-25T23:13:55,786 ******************************************************************************** 2026-07-25T23:13:55,786 ############################ 2026-07-25T23:13:55,786 # Package would be ignored # 2026-07-25T23:13:55,787 ############################ 2026-07-25T23:13:55,787 Python recognizes 'fibsem.ui.qt' as an importable package[^1], 2026-07-25T23:13:55,788 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,789 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,789 package, please make sure that 'fibsem.ui.qt' is explicitly added 2026-07-25T23:13:55,790 to the `packages` configuration field. 2026-07-25T23:13:55,791 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,791 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,791 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,793 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,793 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,794 If you don't want 'fibsem.ui.qt' to be distributed and are 2026-07-25T23:13:55,795 already explicitly excluding 'fibsem.ui.qt' via 2026-07-25T23:13:55,795 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,796 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,797 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,798 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,799 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,801 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,801 even if it does not contain any `.py` files. 2026-07-25T23:13:55,802 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,802 directory, all directories are treated like packages. 2026-07-25T23:13:55,803 ******************************************************************************** 2026-07-25T23:13:55,804 !! 2026-07-25T23:13:55,804 check.warn(importable) 2026-07-25T23:13:55,805 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.qtdesigner_files' is absent from the `packages` configuration. 2026-07-25T23:13:55,805 !! 2026-07-25T23:13:55,807 ******************************************************************************** 2026-07-25T23:13:55,807 ############################ 2026-07-25T23:13:55,808 # Package would be ignored # 2026-07-25T23:13:55,809 ############################ 2026-07-25T23:13:55,809 Python recognizes 'fibsem.ui.qtdesigner_files' as an importable package[^1], 2026-07-25T23:13:55,810 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,811 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,812 package, please make sure that 'fibsem.ui.qtdesigner_files' is explicitly added 2026-07-25T23:13:55,813 to the `packages` configuration field. 2026-07-25T23:13:55,814 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,815 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,816 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,817 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,818 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,819 If you don't want 'fibsem.ui.qtdesigner_files' to be distributed and are 2026-07-25T23:13:55,820 already explicitly excluding 'fibsem.ui.qtdesigner_files' via 2026-07-25T23:13:55,820 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,821 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,822 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,823 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,824 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,826 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,826 even if it does not contain any `.py` files. 2026-07-25T23:13:55,827 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,828 directory, all directories are treated like packages. 2026-07-25T23:13:55,828 ******************************************************************************** 2026-07-25T23:13:55,829 !! 2026-07-25T23:13:55,830 check.warn(importable) 2026-07-25T23:13:55,831 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.widgets' is absent from the `packages` configuration. 2026-07-25T23:13:55,832 !! 2026-07-25T23:13:55,833 ******************************************************************************** 2026-07-25T23:13:55,834 ############################ 2026-07-25T23:13:55,834 # Package would be ignored # 2026-07-25T23:13:55,835 ############################ 2026-07-25T23:13:55,836 Python recognizes 'fibsem.ui.widgets' as an importable package[^1], 2026-07-25T23:13:55,836 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,838 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,838 package, please make sure that 'fibsem.ui.widgets' is explicitly added 2026-07-25T23:13:55,839 to the `packages` configuration field. 2026-07-25T23:13:55,840 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,841 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,842 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,843 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,844 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,846 If you don't want 'fibsem.ui.widgets' to be distributed and are 2026-07-25T23:13:55,846 already explicitly excluding 'fibsem.ui.widgets' via 2026-07-25T23:13:55,847 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,848 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,848 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,850 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,851 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,853 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,854 even if it does not contain any `.py` files. 2026-07-25T23:13:55,855 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,855 directory, all directories are treated like packages. 2026-07-25T23:13:55,856 ******************************************************************************** 2026-07-25T23:13:55,858 !! 2026-07-25T23:13:55,858 check.warn(importable) 2026-07-25T23:13:55,859 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.ui.widgets.tests' is absent from the `packages` configuration. 2026-07-25T23:13:55,859 !! 2026-07-25T23:13:55,860 ******************************************************************************** 2026-07-25T23:13:55,861 ############################ 2026-07-25T23:13:55,862 # Package would be ignored # 2026-07-25T23:13:55,862 ############################ 2026-07-25T23:13:55,863 Python recognizes 'fibsem.ui.widgets.tests' as an importable package[^1], 2026-07-25T23:13:55,863 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,864 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,865 package, please make sure that 'fibsem.ui.widgets.tests' is explicitly added 2026-07-25T23:13:55,865 to the `packages` configuration field. 2026-07-25T23:13:55,867 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,867 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,868 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,869 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,871 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,872 If you don't want 'fibsem.ui.widgets.tests' to be distributed and are 2026-07-25T23:13:55,873 already explicitly excluding 'fibsem.ui.widgets.tests' via 2026-07-25T23:13:55,873 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,874 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,875 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,876 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,877 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,879 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,880 even if it does not contain any `.py` files. 2026-07-25T23:13:55,881 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,881 directory, all directories are treated like packages. 2026-07-25T23:13:55,882 ******************************************************************************** 2026-07-25T23:13:55,883 !! 2026-07-25T23:13:55,884 check.warn(importable) 2026-07-25T23:13:55,884 /tmp/pip-build-env-v_4z8uy6/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fibsem.util' is absent from the `packages` configuration. 2026-07-25T23:13:55,885 !! 2026-07-25T23:13:55,887 ******************************************************************************** 2026-07-25T23:13:55,887 ############################ 2026-07-25T23:13:55,888 # Package would be ignored # 2026-07-25T23:13:55,889 ############################ 2026-07-25T23:13:55,889 Python recognizes 'fibsem.util' as an importable package[^1], 2026-07-25T23:13:55,890 but it is absent from setuptools' `packages` configuration. 2026-07-25T23:13:55,892 This leads to an ambiguous overall configuration. If you want to distribute this 2026-07-25T23:13:55,892 package, please make sure that 'fibsem.util' is explicitly added 2026-07-25T23:13:55,893 to the `packages` configuration field. 2026-07-25T23:13:55,894 Alternatively, you can also rely on setuptools' discovery methods 2026-07-25T23:13:55,894 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-07-25T23:13:55,895 instead of `find_packages(...)`/`find:`). 2026-07-25T23:13:55,896 You can read more about "package discovery" on setuptools documentation page: 2026-07-25T23:13:55,897 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-07-25T23:13:55,898 If you don't want 'fibsem.util' to be distributed and are 2026-07-25T23:13:55,899 already explicitly excluding 'fibsem.util' via 2026-07-25T23:13:55,900 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-07-25T23:13:55,900 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-07-25T23:13:55,901 combination with a more fine grained `package-data` configuration. 2026-07-25T23:13:55,902 You can read more about "package data files" on setuptools documentation page: 2026-07-25T23:13:55,903 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-07-25T23:13:55,904 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-07-25T23:13:55,905 even if it does not contain any `.py` files. 2026-07-25T23:13:55,906 On the other hand, currently there is no concept of package data 2026-07-25T23:13:55,907 directory, all directories are treated like packages. 2026-07-25T23:13:55,908 ******************************************************************************** 2026-07-25T23:13:55,908 !! 2026-07-25T23:13:55,909 check.warn(importable) 2026-07-25T23:13:55,909 creating build/lib/fibsem/alignment 2026-07-25T23:13:55,910 copying fibsem/alignment/__init__.py -> build/lib/fibsem/alignment 2026-07-25T23:13:55,911 copying fibsem/alignment/methods.py -> build/lib/fibsem/alignment 2026-07-25T23:13:55,911 copying fibsem/alignment/plotting.py -> build/lib/fibsem/alignment 2026-07-25T23:13:55,911 creating build/lib/fibsem/applications 2026-07-25T23:13:55,912 copying fibsem/applications/__init__.py -> build/lib/fibsem/applications 2026-07-25T23:13:55,913 creating build/lib/fibsem/applications/autolamella 2026-07-25T23:13:55,913 copying fibsem/applications/autolamella/__init__.py -> build/lib/fibsem/applications/autolamella 2026-07-25T23:13:55,913 copying fibsem/applications/autolamella/config.py -> build/lib/fibsem/applications/autolamella 2026-07-25T23:13:55,914 copying fibsem/applications/autolamella/structures.py -> build/lib/fibsem/applications/autolamella 2026-07-25T23:13:55,915 copying fibsem/applications/autolamella/task_manager_queue.md -> build/lib/fibsem/applications/autolamella 2026-07-25T23:13:55,915 creating build/lib/fibsem/applications/autolamella/compat 2026-07-25T23:13:55,916 copying fibsem/applications/autolamella/compat/notebook.ipynb -> build/lib/fibsem/applications/autolamella/compat 2026-07-25T23:13:55,916 copying fibsem/applications/autolamella/compat/odemis.py -> build/lib/fibsem/applications/autolamella/compat 2026-07-25T23:13:55,917 creating build/lib/fibsem/applications/autolamella/protocol 2026-07-25T23:13:55,917 copying fibsem/applications/autolamella/protocol/.gitkeep -> build/lib/fibsem/applications/autolamella/protocol 2026-07-25T23:13:55,918 copying fibsem/applications/autolamella/protocol/__init__.py -> build/lib/fibsem/applications/autolamella/protocol 2026-07-25T23:13:55,918 copying fibsem/applications/autolamella/protocol/constants.py -> build/lib/fibsem/applications/autolamella/protocol 2026-07-25T23:13:55,919 copying fibsem/applications/autolamella/protocol/legacy.py -> build/lib/fibsem/applications/autolamella/protocol 2026-07-25T23:13:55,920 copying fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml -> build/lib/fibsem/applications/autolamella/protocol 2026-07-25T23:13:55,920 copying fibsem/applications/autolamella/protocol/task-protocol.yaml -> build/lib/fibsem/applications/autolamella/protocol 2026-07-25T23:13:55,921 copying fibsem/applications/autolamella/protocol/validation.py -> build/lib/fibsem/applications/autolamella/protocol 2026-07-25T23:13:55,921 creating build/lib/fibsem/applications/autolamella/protocol/development 2026-07-25T23:13:55,922 copying fibsem/applications/autolamella/protocol/development/task-protocol-coincidence.yaml -> build/lib/fibsem/applications/autolamella/protocol/development 2026-07-25T23:13:55,923 creating build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:55,923 copying fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:55,924 copying fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:55,924 copying fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:55,925 copying fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:55,925 copying fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml -> build/lib/fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:55,926 creating build/lib/fibsem/applications/autolamella/tools 2026-07-25T23:13:55,926 copying fibsem/applications/autolamella/tools/__init__.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-25T23:13:55,927 copying fibsem/applications/autolamella/tools/bug_report.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-25T23:13:55,927 copying fibsem/applications/autolamella/tools/data.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-25T23:13:55,928 copying fibsem/applications/autolamella/tools/notebook.ipynb -> build/lib/fibsem/applications/autolamella/tools 2026-07-25T23:13:55,928 copying fibsem/applications/autolamella/tools/reporting.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-25T23:13:55,929 copying fibsem/applications/autolamella/tools/review.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-25T23:13:55,929 copying fibsem/applications/autolamella/tools/stats.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-25T23:13:55,930 copying fibsem/applications/autolamella/tools/upload_to_hf.py -> build/lib/fibsem/applications/autolamella/tools 2026-07-25T23:13:55,930 creating build/lib/fibsem/applications/autolamella/ui 2026-07-25T23:13:55,931 copying fibsem/applications/autolamella/ui/AutoLamellaMainUI.py -> build/lib/fibsem/applications/autolamella/ui 2026-07-25T23:13:55,931 copying fibsem/applications/autolamella/ui/AutoLamellaUI.py -> build/lib/fibsem/applications/autolamella/ui 2026-07-25T23:13:55,932 copying fibsem/applications/autolamella/ui/__init__.py -> build/lib/fibsem/applications/autolamella/ui 2026-07-25T23:13:55,932 copying fibsem/applications/autolamella/ui/autolamella_fluorescence_acquisition_task_config_widget.py -> build/lib/fibsem/applications/autolamella/ui 2026-07-25T23:13:55,933 copying fibsem/applications/autolamella/ui/run_ui.py -> build/lib/fibsem/applications/autolamella/ui 2026-07-25T23:13:55,933 creating build/lib/fibsem/applications/autolamella/ui/tests 2026-07-25T23:13:55,934 copying fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py -> build/lib/fibsem/applications/autolamella/ui/tests 2026-07-25T23:13:55,934 creating build/lib/fibsem/applications/autolamella/workflows 2026-07-25T23:13:55,935 copying fibsem/applications/autolamella/workflows/_default_milling_config.py -> build/lib/fibsem/applications/autolamella/workflows 2026-07-25T23:13:55,936 copying fibsem/applications/autolamella/workflows/core.py -> build/lib/fibsem/applications/autolamella/workflows 2026-07-25T23:13:55,936 copying fibsem/applications/autolamella/workflows/ui.py -> build/lib/fibsem/applications/autolamella/workflows 2026-07-25T23:13:55,937 creating build/lib/fibsem/applications/autolamella/workflows/legacy 2026-07-25T23:13:55,937 copying fibsem/applications/autolamella/workflows/legacy/autoliftout.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-07-25T23:13:55,937 copying fibsem/applications/autolamella/workflows/legacy/experimental.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-07-25T23:13:55,938 copying fibsem/applications/autolamella/workflows/legacy/serial.py -> build/lib/fibsem/applications/autolamella/workflows/legacy 2026-07-25T23:13:55,938 creating build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,939 copying fibsem/applications/autolamella/workflows/tasks/__init__.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,939 copying fibsem/applications/autolamella/workflows/tasks/acquire_fluorescence.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,940 copying fibsem/applications/autolamella/workflows/tasks/base.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,940 copying fibsem/applications/autolamella/workflows/tasks/basic_milling.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,941 copying fibsem/applications/autolamella/workflows/tasks/fiducial.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,941 copying fibsem/applications/autolamella/workflows/tasks/grid-task-notebook.ipynb -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,941 copying fibsem/applications/autolamella/workflows/tasks/grid_tasks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,942 copying fibsem/applications/autolamella/workflows/tasks/hooks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,942 copying fibsem/applications/autolamella/workflows/tasks/manager.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,943 copying fibsem/applications/autolamella/workflows/tasks/mill_coincident.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,943 copying fibsem/applications/autolamella/workflows/tasks/polishing.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,944 copying fibsem/applications/autolamella/workflows/tasks/queue.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,945 copying fibsem/applications/autolamella/workflows/tasks/reference_image.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,945 copying fibsem/applications/autolamella/workflows/tasks/rough.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,946 copying fibsem/applications/autolamella/workflows/tasks/select_fluorescence_position.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,946 copying fibsem/applications/autolamella/workflows/tasks/select_position.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,947 copying fibsem/applications/autolamella/workflows/tasks/spot_burn.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,947 copying fibsem/applications/autolamella/workflows/tasks/tasks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,948 copying fibsem/applications/autolamella/workflows/tasks/test_hooks.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,948 copying fibsem/applications/autolamella/workflows/tasks/trench.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,949 copying fibsem/applications/autolamella/workflows/tasks/undercut.py -> build/lib/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:55,950 creating build/lib/fibsem/autofunctions 2026-07-25T23:13:55,950 copying fibsem/autofunctions/__init__.py -> build/lib/fibsem/autofunctions 2026-07-25T23:13:55,951 copying fibsem/autofunctions/acb.py -> build/lib/fibsem/autofunctions 2026-07-25T23:13:55,951 copying fibsem/autofunctions/autofocus.py -> build/lib/fibsem/autofunctions 2026-07-25T23:13:55,951 copying fibsem/autofunctions/charge_neutralisation.py -> build/lib/fibsem/autofunctions 2026-07-25T23:13:55,952 copying fibsem/autofunctions/gamma.py -> build/lib/fibsem/autofunctions 2026-07-25T23:13:55,953 copying fibsem/autofunctions/integration.py -> build/lib/fibsem/autofunctions 2026-07-25T23:13:55,953 copying fibsem/autofunctions/metrics.py -> build/lib/fibsem/autofunctions 2026-07-25T23:13:55,954 copying fibsem/autofunctions/plotting.py -> build/lib/fibsem/autofunctions 2026-07-25T23:13:55,955 copying fibsem/autofunctions/stacking.py -> build/lib/fibsem/autofunctions 2026-07-25T23:13:55,955 creating build/lib/fibsem/chat 2026-07-25T23:13:55,956 copying fibsem/chat/.gitignore -> build/lib/fibsem/chat 2026-07-25T23:13:55,956 copying fibsem/chat/main.py -> build/lib/fibsem/chat 2026-07-25T23:13:55,957 copying fibsem/chat/requirements.txt -> build/lib/fibsem/chat 2026-07-25T23:13:55,957 creating build/lib/fibsem/config 2026-07-25T23:13:55,958 copying fibsem/config/default-sample-holder.yaml -> build/lib/fibsem/config 2026-07-25T23:13:55,958 copying fibsem/config/microscope-configuration.yaml -> build/lib/fibsem/config 2026-07-25T23:13:55,959 copying fibsem/config/odemis-configuration.yaml -> build/lib/fibsem/config 2026-07-25T23:13:55,959 copying fibsem/config/sample-holder.yaml -> build/lib/fibsem/config 2026-07-25T23:13:55,960 copying fibsem/config/sim-arctis-configuration.yaml -> build/lib/fibsem/config 2026-07-25T23:13:55,960 copying fibsem/config/tescan-configuration.yaml -> build/lib/fibsem/config 2026-07-25T23:13:55,961 copying fibsem/config/tescan_manipulator.yaml -> build/lib/fibsem/config 2026-07-25T23:13:55,961 copying fibsem/config/tfs-aquilos2-configuration.yaml -> build/lib/fibsem/config 2026-07-25T23:13:55,962 copying fibsem/config/tfs-arctis-configuration.yaml -> build/lib/fibsem/config 2026-07-25T23:13:55,962 copying fibsem/config/tfs-hydra-configuration.yaml -> build/lib/fibsem/config 2026-07-25T23:13:55,963 creating build/lib/fibsem/config/fm 2026-07-25T23:13:55,963 copying fibsem/config/fm/fm-configuration-default.yaml -> build/lib/fibsem/config/fm 2026-07-25T23:13:55,964 creating build/lib/fibsem/correlation 2026-07-25T23:13:55,964 copying fibsem/correlation/README.md -> build/lib/fibsem/correlation 2026-07-25T23:13:55,965 copying fibsem/correlation/__init__.py -> build/lib/fibsem/correlation 2026-07-25T23:13:55,965 copying fibsem/correlation/correlation_v2.py -> build/lib/fibsem/correlation 2026-07-25T23:13:55,966 copying fibsem/correlation/io.py -> build/lib/fibsem/correlation 2026-07-25T23:13:55,966 copying fibsem/correlation/refractive_index.py -> build/lib/fibsem/correlation 2026-07-25T23:13:55,967 copying fibsem/correlation/structures.py -> build/lib/fibsem/correlation 2026-07-25T23:13:55,968 copying fibsem/correlation/test_correlation_v2.py -> build/lib/fibsem/correlation 2026-07-25T23:13:55,968 copying fibsem/correlation/util.py -> build/lib/fibsem/correlation 2026-07-25T23:13:55,969 creating build/lib/fibsem/correlation/pyto 2026-07-25T23:13:55,969 copying fibsem/correlation/pyto/__init__.py -> build/lib/fibsem/correlation/pyto 2026-07-25T23:13:55,970 copying fibsem/correlation/pyto/affine.py -> build/lib/fibsem/correlation/pyto 2026-07-25T23:13:55,970 copying fibsem/correlation/pyto/affine_2d.py -> build/lib/fibsem/correlation/pyto 2026-07-25T23:13:55,971 copying fibsem/correlation/pyto/attributes.py -> build/lib/fibsem/correlation/pyto 2026-07-25T23:13:55,971 copying fibsem/correlation/pyto/common.py -> build/lib/fibsem/correlation/pyto 2026-07-25T23:13:55,972 copying fibsem/correlation/pyto/points.py -> build/lib/fibsem/correlation/pyto 2026-07-25T23:13:55,972 copying fibsem/correlation/pyto/rigid_3d.py -> build/lib/fibsem/correlation/pyto 2026-07-25T23:13:55,973 copying fibsem/correlation/pyto/util.py -> build/lib/fibsem/correlation/pyto 2026-07-25T23:13:55,973 creating build/lib/fibsem/correlation/pyto/test 2026-07-25T23:13:55,974 copying fibsem/correlation/pyto/test/test_affine.py -> build/lib/fibsem/correlation/pyto/test 2026-07-25T23:13:55,974 copying fibsem/correlation/pyto/test/test_affine_2d.py -> build/lib/fibsem/correlation/pyto/test 2026-07-25T23:13:55,974 copying fibsem/correlation/pyto/test/test_rigid_3d.py -> build/lib/fibsem/correlation/pyto/test 2026-07-25T23:13:55,975 creating build/lib/fibsem/correlation/tests 2026-07-25T23:13:55,975 copying fibsem/correlation/tests/__init__.py -> build/lib/fibsem/correlation/tests 2026-07-25T23:13:55,976 copying fibsem/correlation/tests/eval_lut_precision.py -> build/lib/fibsem/correlation/tests 2026-07-25T23:13:55,976 copying fibsem/correlation/tests/test_structures.py -> build/lib/fibsem/correlation/tests 2026-07-25T23:13:55,977 creating build/lib/fibsem/correlation/ui 2026-07-25T23:13:55,977 copying fibsem/correlation/ui/__init__.py -> build/lib/fibsem/correlation/ui 2026-07-25T23:13:55,978 creating build/lib/fibsem/correlation/ui/widgets 2026-07-25T23:13:55,978 copying fibsem/correlation/ui/widgets/__init__.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-25T23:13:55,979 copying fibsem/correlation/ui/widgets/coordinate_list_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-25T23:13:55,979 copying fibsem/correlation/ui/widgets/correlation_result_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-25T23:13:55,980 copying fibsem/correlation/ui/widgets/correlation_tab_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-25T23:13:55,980 copying fibsem/correlation/ui/widgets/fm_image_display_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-25T23:13:55,981 copying fibsem/correlation/ui/widgets/image_point_canvas.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-25T23:13:55,981 copying fibsem/correlation/ui/widgets/refractive_index_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-25T23:13:55,982 copying fibsem/correlation/ui/widgets/test_correlation_tab_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-25T23:13:55,982 copying fibsem/correlation/ui/widgets/test_fm_image_display_widget.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-25T23:13:55,983 copying fibsem/correlation/ui/widgets/test_image_point_canvas.py -> build/lib/fibsem/correlation/ui/widgets 2026-07-25T23:13:55,983 creating build/lib/fibsem/detection 2026-07-25T23:13:55,984 copying fibsem/detection/__init__.py -> build/lib/fibsem/detection 2026-07-25T23:13:55,984 copying fibsem/detection/config-autolamella-liftout-hf-mega.yaml -> build/lib/fibsem/detection 2026-07-25T23:13:55,985 copying fibsem/detection/config-autolamella-liftout.yaml -> build/lib/fibsem/detection 2026-07-25T23:13:55,987 copying fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml -> build/lib/fibsem/detection 2026-07-25T23:13:55,990 copying fibsem/detection/config-autolamella-serial-liftout.yaml -> build/lib/fibsem/detection 2026-07-25T23:13:55,992 copying fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml -> build/lib/fibsem/detection 2026-07-25T23:13:55,994 copying fibsem/detection/config-autolamella-waffle-v2.yaml -> build/lib/fibsem/detection 2026-07-25T23:13:55,996 copying fibsem/detection/config-autolamella-waffle.yml -> build/lib/fibsem/detection 2026-07-25T23:13:55,999 copying fibsem/detection/config-autoliftout-dm-embryo.yml -> build/lib/fibsem/detection 2026-07-25T23:13:56,001 copying fibsem/detection/detection.py -> build/lib/fibsem/detection 2026-07-25T23:13:56,004 copying fibsem/detection/evaluation.py -> build/lib/fibsem/detection 2026-07-25T23:13:56,007 copying fibsem/detection/run_evaluation.py -> build/lib/fibsem/detection 2026-07-25T23:13:56,010 copying fibsem/detection/test_image.tif -> build/lib/fibsem/detection 2026-07-25T23:13:56,034 copying fibsem/detection/test_image_2.tif -> build/lib/fibsem/detection 2026-07-25T23:13:56,062 copying fibsem/detection/utils.py -> build/lib/fibsem/detection 2026-07-25T23:13:56,064 creating build/lib/fibsem/detection/test_images 2026-07-25T23:13:56,066 copying fibsem/detection/test_images/test_needle_mask.tif -> build/lib/fibsem/detection/test_images 2026-07-25T23:13:56,069 copying fibsem/detection/test_images/test_needle_mask2.tif -> build/lib/fibsem/detection/test_images 2026-07-25T23:13:56,072 copying fibsem/detection/test_images/test_needle_mask3.tif -> build/lib/fibsem/detection/test_images 2026-07-25T23:13:56,075 creating build/lib/fibsem/detection/test_images/serial 2026-07-25T23:13:56,077 copying fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-25T23:13:56,080 copying fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-25T23:13:56,083 copying fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-25T23:13:56,086 copying fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-25T23:13:56,089 copying fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-25T23:13:56,093 copying fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-25T23:13:56,096 copying fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-25T23:13:56,099 copying fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/lib/fibsem/detection/test_images/serial 2026-07-25T23:13:56,102 creating build/lib/fibsem/fm 2026-07-25T23:13:56,103 copying fibsem/fm/__init__.py -> build/lib/fibsem/fm 2026-07-25T23:13:56,106 copying fibsem/fm/acquisition.py -> build/lib/fibsem/fm 2026-07-25T23:13:56,110 copying fibsem/fm/autoscript.py -> build/lib/fibsem/fm 2026-07-25T23:13:56,113 copying fibsem/fm/config.py -> build/lib/fibsem/fm 2026-07-25T23:13:56,116 copying fibsem/fm/fm-example-notebook.ipynb -> build/lib/fibsem/fm 2026-07-25T23:13:56,119 copying fibsem/fm/fm-notebook.ipynb -> build/lib/fibsem/fm 2026-07-25T23:13:56,123 copying fibsem/fm/microscope.py -> build/lib/fibsem/fm 2026-07-25T23:13:56,127 copying fibsem/fm/odemis.py -> build/lib/fibsem/fm 2026-07-25T23:13:56,130 copying fibsem/fm/plot_autofocus_demo.py -> build/lib/fibsem/fm 2026-07-25T23:13:56,132 copying fibsem/fm/plotting.py -> build/lib/fibsem/fm 2026-07-25T23:13:56,135 copying fibsem/fm/structures.py -> build/lib/fibsem/fm 2026-07-25T23:13:56,139 copying fibsem/fm/timing.py -> build/lib/fibsem/fm 2026-07-25T23:13:56,142 creating build/lib/fibsem/fm/calibration 2026-07-25T23:13:56,143 copying fibsem/fm/calibration/__init__.py -> build/lib/fibsem/fm/calibration 2026-07-25T23:13:56,146 creating build/lib/fibsem/imaging 2026-07-25T23:13:56,147 copying fibsem/imaging/.gitkeep -> build/lib/fibsem/imaging 2026-07-25T23:13:56,149 copying fibsem/imaging/__init__.py -> build/lib/fibsem/imaging 2026-07-25T23:13:56,151 copying fibsem/imaging/drawing.py -> build/lib/fibsem/imaging 2026-07-25T23:13:56,154 copying fibsem/imaging/masks.py -> build/lib/fibsem/imaging 2026-07-25T23:13:56,156 copying fibsem/imaging/spot.py -> build/lib/fibsem/imaging 2026-07-25T23:13:56,159 copying fibsem/imaging/tiled.py -> build/lib/fibsem/imaging 2026-07-25T23:13:56,162 copying fibsem/imaging/transforms.py -> build/lib/fibsem/imaging 2026-07-25T23:13:56,165 copying fibsem/imaging/utils.py -> build/lib/fibsem/imaging 2026-07-25T23:13:56,167 creating build/lib/fibsem/imaging/tests 2026-07-25T23:13:56,168 copying fibsem/imaging/tests/__init__.py -> build/lib/fibsem/imaging/tests 2026-07-25T23:13:56,170 copying fibsem/imaging/tests/test_drawing_widget.py -> build/lib/fibsem/imaging/tests 2026-07-25T23:13:56,172 copying fibsem/imaging/tests/test_tile_order_strategies.py -> build/lib/fibsem/imaging/tests 2026-07-25T23:13:56,175 creating build/lib/fibsem/microscopes 2026-07-25T23:13:56,175 copying fibsem/microscopes/_stage.py -> build/lib/fibsem/microscopes 2026-07-25T23:13:56,178 copying fibsem/microscopes/autoscript.py -> build/lib/fibsem/microscopes 2026-07-25T23:13:56,181 copying fibsem/microscopes/notebook.ipynb -> build/lib/fibsem/microscopes 2026-07-25T23:13:56,184 copying fibsem/microscopes/odemis_microscope.py -> build/lib/fibsem/microscopes 2026-07-25T23:13:56,187 copying fibsem/microscopes/simulator.py -> build/lib/fibsem/microscopes 2026-07-25T23:13:56,191 copying fibsem/microscopes/tescan.py -> build/lib/fibsem/microscopes 2026-07-25T23:13:56,194 copying fibsem/microscopes/zeiss.py -> build/lib/fibsem/microscopes 2026-07-25T23:13:56,196 creating build/lib/fibsem/milling 2026-07-25T23:13:56,197 copying fibsem/milling/__init__.py -> build/lib/fibsem/milling 2026-07-25T23:13:56,200 copying fibsem/milling/base.py -> build/lib/fibsem/milling 2026-07-25T23:13:56,202 copying fibsem/milling/config.py -> build/lib/fibsem/milling 2026-07-25T23:13:56,204 copying fibsem/milling/core.py -> build/lib/fibsem/milling 2026-07-25T23:13:56,207 copying fibsem/milling/properties.py -> build/lib/fibsem/milling 2026-07-25T23:13:56,209 copying fibsem/milling/tasks.py -> build/lib/fibsem/milling 2026-07-25T23:13:56,212 creating build/lib/fibsem/milling/patterning 2026-07-25T23:13:56,213 copying fibsem/milling/patterning/__init__.py -> build/lib/fibsem/milling/patterning 2026-07-25T23:13:56,216 copying fibsem/milling/patterning/patterns2.py -> build/lib/fibsem/milling/patterning 2026-07-25T23:13:56,219 copying fibsem/milling/patterning/plotting.py -> build/lib/fibsem/milling/patterning 2026-07-25T23:13:56,222 copying fibsem/milling/patterning/utils.py -> build/lib/fibsem/milling/patterning 2026-07-25T23:13:56,225 creating build/lib/fibsem/milling/strategy 2026-07-25T23:13:56,226 copying fibsem/milling/strategy/__init__.py -> build/lib/fibsem/milling/strategy 2026-07-25T23:13:56,228 copying fibsem/milling/strategy/coincidence.py -> build/lib/fibsem/milling/strategy 2026-07-25T23:13:56,231 copying fibsem/milling/strategy/overtilt.py -> build/lib/fibsem/milling/strategy 2026-07-25T23:13:56,234 copying fibsem/milling/strategy/standard.py -> build/lib/fibsem/milling/strategy 2026-07-25T23:13:56,236 creating build/lib/fibsem/segmentation 2026-07-25T23:13:56,237 copying fibsem/segmentation/README.md -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,239 copying fibsem/segmentation/__init__.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,241 copying fibsem/segmentation/_nnunet.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,244 copying fibsem/segmentation/adaptive_model.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,246 copying fibsem/segmentation/augmentation.ipynb -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,249 copying fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,251 copying fibsem/segmentation/config-autolamella-mega-v4.yml -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,253 copying fibsem/segmentation/config-autolamella-mega-v5.yml -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,256 copying fibsem/segmentation/config-autolamella-waffle4.yml -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,258 copying fibsem/segmentation/config.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,261 copying fibsem/segmentation/config.yml -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,263 copying fibsem/segmentation/dataset.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,265 copying fibsem/segmentation/example.ipynb -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,269 copying fibsem/segmentation/hf_segmentation_model.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,271 copying fibsem/segmentation/huggingface.ipynb -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,274 copying fibsem/segmentation/inference.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,276 copying fibsem/segmentation/model.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,279 copying fibsem/segmentation/nnunet_model.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,281 copying fibsem/segmentation/nnunet_model_v2.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,283 copying fibsem/segmentation/onnx_model.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,286 copying fibsem/segmentation/requirements.txt -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,288 copying fibsem/segmentation/sam_model.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,291 copying fibsem/segmentation/segmentation_config.yaml -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,293 copying fibsem/segmentation/test_image.tif -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,315 copying fibsem/segmentation/train.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,318 copying fibsem/segmentation/utils.py -> build/lib/fibsem/segmentation 2026-07-25T23:13:56,320 creating build/lib/fibsem/segmentation/docs 2026-07-25T23:13:56,321 copying fibsem/segmentation/docs/example_napari.png -> build/lib/fibsem/segmentation/docs 2026-07-25T23:13:56,365 creating build/lib/fibsem/segmentation/docs/imgs/combined 2026-07-25T23:13:56,366 copying fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/lib/fibsem/segmentation/docs/imgs/combined 2026-07-25T23:13:56,387 creating build/lib/fibsem/segmentation/docs/imgs/labelled 2026-07-25T23:13:56,388 copying fibsem/segmentation/docs/imgs/labelled/label.tif -> build/lib/fibsem/segmentation/docs/imgs/labelled 2026-07-25T23:13:56,418 creating build/lib/fibsem/segmentation/docs/imgs/raw 2026-07-25T23:13:56,419 copying fibsem/segmentation/docs/imgs/raw/image.tif -> build/lib/fibsem/segmentation/docs/imgs/raw 2026-07-25T23:13:56,443 creating build/lib/fibsem/segmentation/models 2026-07-25T23:13:56,444 copying fibsem/segmentation/models/.gitkeep -> build/lib/fibsem/segmentation/models 2026-07-25T23:13:56,446 creating build/lib/fibsem/server 2026-07-25T23:13:56,447 copying fibsem/server/GAPS.md -> build/lib/fibsem/server 2026-07-25T23:13:56,449 copying fibsem/server/README.md -> build/lib/fibsem/server 2026-07-25T23:13:56,452 copying fibsem/server/__init__.py -> build/lib/fibsem/server 2026-07-25T23:13:56,454 copying fibsem/server/client.py -> build/lib/fibsem/server 2026-07-25T23:13:56,456 copying fibsem/server/models.py -> build/lib/fibsem/server 2026-07-25T23:13:56,459 copying fibsem/server/server.py -> build/lib/fibsem/server 2026-07-25T23:13:56,461 creating build/lib/fibsem/tools 2026-07-25T23:13:56,462 copying fibsem/tools/_parser.py -> build/lib/fibsem/tools 2026-07-25T23:13:56,465 copying fibsem/tools/_streamlit.py -> build/lib/fibsem/tools 2026-07-25T23:13:56,467 copying fibsem/tools/beam_shift_alignment_test.py -> build/lib/fibsem/tools 2026-07-25T23:13:56,469 copying fibsem/tools/run_manipulator_calibration.py -> build/lib/fibsem/tools 2026-07-25T23:13:56,471 copying fibsem/tools/run_split_dataset.py -> build/lib/fibsem/tools 2026-07-25T23:13:56,473 copying fibsem/tools/telemetry.py -> build/lib/fibsem/tools 2026-07-25T23:13:56,476 creating build/lib/fibsem/ui 2026-07-25T23:13:56,477 copying fibsem/ui/.gitkeep -> build/lib/fibsem/ui 2026-07-25T23:13:56,479 copying fibsem/ui/FMAcquisitionWidget.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,483 copying fibsem/ui/FibsemCryoDepositionWidget.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,486 copying fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,488 copying fibsem/ui/FibsemImageSettingsWidget.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,492 copying fibsem/ui/FibsemLabellingUI.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,495 copying fibsem/ui/FibsemManipulatorWidget.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,497 copying fibsem/ui/FibsemMinimapWidget.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,501 copying fibsem/ui/FibsemMovementWidget.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,503 copying fibsem/ui/FibsemSegmentationModelWidget.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,506 copying fibsem/ui/FibsemSpotBurnWidget.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,509 copying fibsem/ui/FibsemSystemSetupWidget.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,511 copying fibsem/ui/FibsemUI.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,513 copying fibsem/ui/__init__.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,516 copying fibsem/ui/icon.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,518 copying fibsem/ui/notification_service.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,520 copying fibsem/ui/stylesheets.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,522 copying fibsem/ui/utils.py -> build/lib/fibsem/ui 2026-07-25T23:13:56,525 creating build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,526 copying fibsem/ui/fm/widgets/__init__.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,529 copying fibsem/ui/fm/widgets/acquisition_summary_dialog.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,531 copying fibsem/ui/fm/widgets/autofocus_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,534 copying fibsem/ui/fm/widgets/autofocus_widget_demo.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,536 copying fibsem/ui/fm/widgets/camera_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,539 copying fibsem/ui/fm/widgets/channel_list_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,542 copying fibsem/ui/fm/widgets/channel_settings_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,544 copying fibsem/ui/fm/widgets/display_options_dialog.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,547 copying fibsem/ui/fm/widgets/fluorescence_plot_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,549 copying fibsem/ui/fm/widgets/fm_image_viewer_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,552 copying fibsem/ui/fm/widgets/fm_multi_channel_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,554 copying fibsem/ui/fm/widgets/histogram_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,557 copying fibsem/ui/fm/widgets/line_plot_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,560 copying fibsem/ui/fm/widgets/load_image_dialog.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,562 copying fibsem/ui/fm/widgets/minimap_plot_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,566 copying fibsem/ui/fm/widgets/minimap_plot_widget_example.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,568 copying fibsem/ui/fm/widgets/objective_control_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,571 copying fibsem/ui/fm/widgets/overview_confirmation_dialog.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,574 copying fibsem/ui/fm/widgets/overview_parameters_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,577 copying fibsem/ui/fm/widgets/saved_positions_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,580 copying fibsem/ui/fm/widgets/sem_acquisition_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,583 copying fibsem/ui/fm/widgets/stage_position_control_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,585 copying fibsem/ui/fm/widgets/test_channel_list_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,588 copying fibsem/ui/fm/widgets/test_line_plot.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,590 copying fibsem/ui/fm/widgets/z_parameters_widget.py -> build/lib/fibsem/ui/fm/widgets 2026-07-25T23:13:56,593 creating build/lib/fibsem/ui/icons 2026-07-25T23:13:56,594 copying fibsem/ui/icons/check.svg -> build/lib/fibsem/ui/icons 2026-07-25T23:13:56,597 copying fibsem/ui/icons/chevron_down.svg -> build/lib/fibsem/ui/icons 2026-07-25T23:13:56,599 copying fibsem/ui/icons/drag_handle.svg -> build/lib/fibsem/ui/icons 2026-07-25T23:13:56,601 copying fibsem/ui/icons/minus.svg -> build/lib/fibsem/ui/icons 2026-07-25T23:13:56,603 copying fibsem/ui/icons/plus.svg -> build/lib/fibsem/ui/icons 2026-07-25T23:13:56,605 creating build/lib/fibsem/ui/napari 2026-07-25T23:13:56,606 copying fibsem/ui/napari/patterns.py -> build/lib/fibsem/ui/napari 2026-07-25T23:13:56,610 copying fibsem/ui/napari/properties.py -> build/lib/fibsem/ui/napari 2026-07-25T23:13:56,612 copying fibsem/ui/napari/utilities.py -> build/lib/fibsem/ui/napari 2026-07-25T23:13:56,615 creating build/lib/fibsem/ui/qt 2026-07-25T23:13:56,617 copying fibsem/ui/qt/__init__.py -> build/lib/fibsem/ui/qt 2026-07-25T23:13:56,620 copying fibsem/ui/qt/threading.py -> build/lib/fibsem/ui/qt 2026-07-25T23:13:56,623 creating build/lib/fibsem/ui/qtdesigner_files 2026-07-25T23:13:56,624 copying fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-25T23:13:56,628 copying fibsem/ui/qtdesigner_files/FibsemUI.py -> build/lib/fibsem/ui/qtdesigner_files 2026-07-25T23:13:56,630 creating build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,631 copying fibsem/ui/widgets/angle_measure.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,635 copying fibsem/ui/widgets/annotation_pin.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,638 copying fibsem/ui/widgets/autolamella_apply_protocol_dialog.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,641 copying fibsem/ui/widgets/autolamella_create_experiment_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,644 copying fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,648 copying fibsem/ui/widgets/autolamella_generate_report_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,651 copying fibsem/ui/widgets/autolamella_global_task_editor_dialog.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,654 copying fibsem/ui/widgets/autolamella_lamella_protocol_editor.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,658 copying fibsem/ui/widgets/autolamella_load_experiment_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,662 copying fibsem/ui/widgets/autolamella_load_task_protocol_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,666 copying fibsem/ui/widgets/autolamella_overview_image_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,670 copying fibsem/ui/widgets/autolamella_protocol_information_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,672 copying fibsem/ui/widgets/autolamella_spot_burn_coordinates_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,676 copying fibsem/ui/widgets/autolamella_task_config_editor.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,680 copying fibsem/ui/widgets/autolamella_task_config_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,683 copying fibsem/ui/widgets/beam_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,687 copying fibsem/ui/widgets/beam_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,690 copying fibsem/ui/widgets/bug_report_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,693 copying fibsem/ui/widgets/contrast_gamma_control.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,696 copying fibsem/ui/widgets/custom_widgets.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,700 copying fibsem/ui/widgets/dataframe_table_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,703 copying fibsem/ui/widgets/detector_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,707 copying fibsem/ui/widgets/drag_distance.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,711 copying fibsem/ui/widgets/dual_beam_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,715 copying fibsem/ui/widgets/fibsem_image_flow_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,717 copying fibsem/ui/widgets/fluorescence_coincidence_viewer_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,723 copying fibsem/ui/widgets/fluorescence_control_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,727 copying fibsem/ui/widgets/hook_config_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,730 copying fibsem/ui/widgets/hud_ticker.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,733 copying fibsem/ui/widgets/image_annotation_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,737 copying fibsem/ui/widgets/image_canvas.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,741 copying fibsem/ui/widgets/image_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,744 copying fibsem/ui/widgets/lamella_card_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,748 copying fibsem/ui/widgets/lamella_default_config_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,751 copying fibsem/ui/widgets/lamella_list_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,754 copying fibsem/ui/widgets/lamella_pose_list_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,757 copying fibsem/ui/widgets/lamella_task_image_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,761 copying fibsem/ui/widgets/lamella_workflow_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,764 copying fibsem/ui/widgets/microscope_config_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,768 copying fibsem/ui/widgets/milling_alignment_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,771 copying fibsem/ui/widgets/milling_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,774 copying fibsem/ui/widgets/milling_stage_list_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,777 copying fibsem/ui/widgets/milling_stages_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,780 copying fibsem/ui/widgets/milling_task_acquisition_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,783 copying fibsem/ui/widgets/milling_task_config_widget2.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,787 copying fibsem/ui/widgets/milling_task_viewer_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,790 copying fibsem/ui/widgets/milling_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,793 copying fibsem/ui/widgets/notifications.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,796 copying fibsem/ui/widgets/overview_acquisition_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,799 copying fibsem/ui/widgets/pattern_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,803 copying fibsem/ui/widgets/preferences_dialog.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,806 copying fibsem/ui/widgets/profile_line.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,809 copying fibsem/ui/widgets/progress_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,811 copying fibsem/ui/widgets/radial_menu.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,814 copying fibsem/ui/widgets/reference_image_parameters_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,818 copying fibsem/ui/widgets/sample_holder_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,821 copying fibsem/ui/widgets/saved_position_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,824 copying fibsem/ui/widgets/selected_lamella_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,827 copying fibsem/ui/widgets/strategy_settings_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,830 copying fibsem/ui/widgets/task_history_table_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,833 copying fibsem/ui/widgets/task_summary_formatting.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,835 copying fibsem/ui/widgets/tiled_overview_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,839 copying fibsem/ui/widgets/workflow_config_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,842 copying fibsem/ui/widgets/workflow_info_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,845 copying fibsem/ui/widgets/workflow_summary_dialog.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,848 copying fibsem/ui/widgets/workflow_task_editor_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,851 copying fibsem/ui/widgets/workflow_timeline_widget.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,855 copying fibsem/ui/widgets/zoom_loupe.py -> build/lib/fibsem/ui/widgets 2026-07-25T23:13:56,857 creating build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,858 copying fibsem/ui/widgets/tests/test-icon-tool-button.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,861 copying fibsem/ui/widgets/tests/test-image-settings-widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,864 copying fibsem/ui/widgets/tests/test-lamella-card.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,867 copying fibsem/ui/widgets/tests/test-lamella-list.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,870 copying fibsem/ui/widgets/tests/test-lamella-workflow.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,873 copying fibsem/ui/widgets/tests/test-progress-bar.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,875 copying fibsem/ui/widgets/tests/test-selected-lamella.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,878 copying fibsem/ui/widgets/tests/test-spinner-icon.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,881 copying fibsem/ui/widgets/tests/test-workflow-config.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,884 copying fibsem/ui/widgets/tests/test_alignment_comparison.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,887 copying fibsem/ui/widgets/tests/test_alignment_plot_v2.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,889 copying fibsem/ui/widgets/tests/test_countdown_progress.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,892 copying fibsem/ui/widgets/tests/test_drag_distance.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,895 copying fibsem/ui/widgets/tests/test_hooks_manual.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,898 copying fibsem/ui/widgets/tests/test_image_canvas.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,901 copying fibsem/ui/widgets/tests/test_lamella_default_config_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,903 copying fibsem/ui/widgets/tests/test_lamella_name_list_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,906 copying fibsem/ui/widgets/tests/test_lamella_task_image_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,908 copying fibsem/ui/widgets/tests/test_milling_settings_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,911 copying fibsem/ui/widgets/tests/test_milling_stage_list.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,914 copying fibsem/ui/widgets/tests/test_milling_stages_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,916 copying fibsem/ui/widgets/tests/test_milling_task_config_widget2.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,919 copying fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,922 copying fibsem/ui/widgets/tests/test_pattern_settings_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,924 copying fibsem/ui/widgets/tests/test_progress_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,927 copying fibsem/ui/widgets/tests/test_qt_threading.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,930 copying fibsem/ui/widgets/tests/test_radial_menu.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,933 copying fibsem/ui/widgets/tests/test_radial_ruler_demo.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,936 copying fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,939 copying fibsem/ui/widgets/tests/test_saved_position_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,942 copying fibsem/ui/widgets/tests/test_splitter_layouts.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,944 copying fibsem/ui/widgets/tests/test_toast.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,947 copying fibsem/ui/widgets/tests/test_workflow_task_editor_widget.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,949 copying fibsem/ui/widgets/tests/test_workflow_timeline_animation.py -> build/lib/fibsem/ui/widgets/tests 2026-07-25T23:13:56,952 creating build/lib/fibsem/util 2026-07-25T23:13:56,953 copying fibsem/util/__init__.py -> build/lib/fibsem/util 2026-07-25T23:13:56,955 copying fibsem/util/draw_numbers.py -> build/lib/fibsem/util 2026-07-25T23:13:56,958 copying fibsem/util/filename.py -> build/lib/fibsem/util 2026-07-25T23:13:56,977 installing to build/bdist.linux-armv7l/wheel 2026-07-25T23:13:56,978 running install 2026-07-25T23:13:57,001 running install_lib 2026-07-25T23:13:57,009 creating build/bdist.linux-armv7l/wheel 2026-07-25T23:13:57,012 creating build/bdist.linux-armv7l/wheel/fibsem 2026-07-25T23:13:57,013 copying build/lib/fibsem/calibration.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:57,016 copying build/lib/fibsem/config.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:57,019 creating build/bdist.linux-armv7l/wheel/fibsem/milling 2026-07-25T23:13:57,021 copying build/lib/fibsem/milling/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-25T23:13:57,023 copying build/lib/fibsem/milling/tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-25T23:13:57,026 copying build/lib/fibsem/milling/core.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-25T23:13:57,028 copying build/lib/fibsem/milling/properties.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-25T23:13:57,030 creating build/bdist.linux-armv7l/wheel/fibsem/milling/strategy 2026-07-25T23:13:57,031 copying build/lib/fibsem/milling/strategy/coincidence.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-07-25T23:13:57,034 copying build/lib/fibsem/milling/strategy/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-07-25T23:13:57,036 copying build/lib/fibsem/milling/strategy/overtilt.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-07-25T23:13:57,038 copying build/lib/fibsem/milling/strategy/standard.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/strategy 2026-07-25T23:13:57,040 copying build/lib/fibsem/milling/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-25T23:13:57,042 creating build/bdist.linux-armv7l/wheel/fibsem/milling/patterning 2026-07-25T23:13:57,043 copying build/lib/fibsem/milling/patterning/plotting.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-07-25T23:13:57,046 copying build/lib/fibsem/milling/patterning/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-07-25T23:13:57,048 copying build/lib/fibsem/milling/patterning/patterns2.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-07-25T23:13:57,051 copying build/lib/fibsem/milling/patterning/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling/patterning 2026-07-25T23:13:57,053 copying build/lib/fibsem/milling/base.py -> build/bdist.linux-armv7l/wheel/./fibsem/milling 2026-07-25T23:13:57,056 creating build/bdist.linux-armv7l/wheel/fibsem/microscopes 2026-07-25T23:13:57,057 copying build/lib/fibsem/microscopes/odemis_microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-25T23:13:57,060 copying build/lib/fibsem/microscopes/zeiss.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-25T23:13:57,062 copying build/lib/fibsem/microscopes/simulator.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-25T23:13:57,065 copying build/lib/fibsem/microscopes/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-25T23:13:57,067 copying build/lib/fibsem/microscopes/autoscript.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-25T23:13:57,069 copying build/lib/fibsem/microscopes/tescan.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-25T23:13:57,072 copying build/lib/fibsem/microscopes/_stage.py -> build/bdist.linux-armv7l/wheel/./fibsem/microscopes 2026-07-25T23:13:57,074 copying build/lib/fibsem/cancellation.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:57,076 copying build/lib/fibsem/transformations.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:57,079 creating build/bdist.linux-armv7l/wheel/fibsem/chat 2026-07-25T23:13:57,079 copying build/lib/fibsem/chat/.gitignore -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-07-25T23:13:57,081 copying build/lib/fibsem/chat/requirements.txt -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-07-25T23:13:57,083 copying build/lib/fibsem/chat/main.py -> build/bdist.linux-armv7l/wheel/./fibsem/chat 2026-07-25T23:13:57,085 copying build/lib/fibsem/cli.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:57,088 creating build/bdist.linux-armv7l/wheel/fibsem/detection 2026-07-25T23:13:57,089 copying build/lib/fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,091 copying build/lib/fibsem/detection/evaluation.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,093 copying build/lib/fibsem/detection/config-autoliftout-dm-embryo.yml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,095 copying build/lib/fibsem/detection/run_evaluation.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,097 copying build/lib/fibsem/detection/config-autolamella-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,099 copying build/lib/fibsem/detection/config-autolamella-waffle-v2.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,100 copying build/lib/fibsem/detection/config-autolamella-liftout-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,102 copying build/lib/fibsem/detection/test_image_2.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,126 copying build/lib/fibsem/detection/config-autolamella-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,128 copying build/lib/fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,130 copying build/lib/fibsem/detection/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,132 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images 2026-07-25T23:13:57,133 copying build/lib/fibsem/detection/test_images/test_needle_mask2.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-07-25T23:13:57,135 copying build/lib/fibsem/detection/test_images/test_needle_mask.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-07-25T23:13:57,138 copying build/lib/fibsem/detection/test_images/test_needle_mask3.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images 2026-07-25T23:13:57,140 creating build/bdist.linux-armv7l/wheel/fibsem/detection/test_images/serial 2026-07-25T23:13:57,141 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_07.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-25T23:13:57,144 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_04.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-25T23:13:57,146 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_01.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-25T23:13:57,149 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_03.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-25T23:13:57,151 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_02.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-25T23:13:57,153 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_00.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-25T23:13:57,156 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_06.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-25T23:13:57,158 copying build/lib/fibsem/detection/test_images/serial/serial_liftout_mask_05.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection/test_images/serial 2026-07-25T23:13:57,160 copying build/lib/fibsem/detection/config-autolamella-waffle.yml -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,162 copying build/lib/fibsem/detection/detection.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,165 copying build/lib/fibsem/detection/test_image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,188 copying build/lib/fibsem/detection/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/detection 2026-07-25T23:13:57,191 creating build/bdist.linux-armv7l/wheel/fibsem/correlation 2026-07-25T23:13:57,192 copying build/lib/fibsem/correlation/io.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-25T23:13:57,195 copying build/lib/fibsem/correlation/test_correlation_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-25T23:13:57,197 copying build/lib/fibsem/correlation/util.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-25T23:13:57,200 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/ui 2026-07-25T23:13:57,201 copying build/lib/fibsem/correlation/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui 2026-07-25T23:13:57,203 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/ui/widgets 2026-07-25T23:13:57,204 copying build/lib/fibsem/correlation/ui/widgets/test_image_point_canvas.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-25T23:13:57,207 copying build/lib/fibsem/correlation/ui/widgets/refractive_index_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-25T23:13:57,209 copying build/lib/fibsem/correlation/ui/widgets/coordinate_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-25T23:13:57,212 copying build/lib/fibsem/correlation/ui/widgets/correlation_tab_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-25T23:13:57,216 copying build/lib/fibsem/correlation/ui/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-25T23:13:57,217 copying build/lib/fibsem/correlation/ui/widgets/image_point_canvas.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-25T23:13:57,220 copying build/lib/fibsem/correlation/ui/widgets/test_fm_image_display_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-25T23:13:57,222 copying build/lib/fibsem/correlation/ui/widgets/test_correlation_tab_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-25T23:13:57,224 copying build/lib/fibsem/correlation/ui/widgets/fm_image_display_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-25T23:13:57,227 copying build/lib/fibsem/correlation/ui/widgets/correlation_result_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/ui/widgets 2026-07-25T23:13:57,229 copying build/lib/fibsem/correlation/correlation_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-25T23:13:57,233 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/tests 2026-07-25T23:13:57,234 copying build/lib/fibsem/correlation/tests/test_structures.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/tests 2026-07-25T23:13:57,236 copying build/lib/fibsem/correlation/tests/eval_lut_precision.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/tests 2026-07-25T23:13:57,238 copying build/lib/fibsem/correlation/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/tests 2026-07-25T23:13:57,240 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/pyto 2026-07-25T23:13:57,241 copying build/lib/fibsem/correlation/pyto/affine_2d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-25T23:13:57,244 copying build/lib/fibsem/correlation/pyto/points.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-25T23:13:57,246 copying build/lib/fibsem/correlation/pyto/common.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-25T23:13:57,248 copying build/lib/fibsem/correlation/pyto/attributes.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-25T23:13:57,250 copying build/lib/fibsem/correlation/pyto/util.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-25T23:13:57,252 copying build/lib/fibsem/correlation/pyto/affine.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-25T23:13:57,254 copying build/lib/fibsem/correlation/pyto/rigid_3d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-25T23:13:57,257 copying build/lib/fibsem/correlation/pyto/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto 2026-07-25T23:13:57,260 creating build/bdist.linux-armv7l/wheel/fibsem/correlation/pyto/test 2026-07-25T23:13:57,261 copying build/lib/fibsem/correlation/pyto/test/test_affine.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-07-25T23:13:57,263 copying build/lib/fibsem/correlation/pyto/test/test_rigid_3d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-07-25T23:13:57,266 copying build/lib/fibsem/correlation/pyto/test/test_affine_2d.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation/pyto/test 2026-07-25T23:13:57,269 copying build/lib/fibsem/correlation/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-25T23:13:57,271 copying build/lib/fibsem/correlation/refractive_index.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-25T23:13:57,273 copying build/lib/fibsem/correlation/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-25T23:13:57,275 copying build/lib/fibsem/correlation/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/correlation 2026-07-25T23:13:57,278 creating build/bdist.linux-armv7l/wheel/fibsem/autofunctions 2026-07-25T23:13:57,279 copying build/lib/fibsem/autofunctions/acb.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-25T23:13:57,281 copying build/lib/fibsem/autofunctions/plotting.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-25T23:13:57,284 copying build/lib/fibsem/autofunctions/stacking.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-25T23:13:57,286 copying build/lib/fibsem/autofunctions/integration.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-25T23:13:57,288 copying build/lib/fibsem/autofunctions/gamma.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-25T23:13:57,290 copying build/lib/fibsem/autofunctions/charge_neutralisation.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-25T23:13:57,292 copying build/lib/fibsem/autofunctions/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-25T23:13:57,294 copying build/lib/fibsem/autofunctions/autofocus.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-25T23:13:57,297 copying build/lib/fibsem/autofunctions/metrics.py -> build/bdist.linux-armv7l/wheel/./fibsem/autofunctions 2026-07-25T23:13:57,300 creating build/bdist.linux-armv7l/wheel/fibsem/ui 2026-07-25T23:13:57,301 copying build/lib/fibsem/ui/notification_service.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,303 copying build/lib/fibsem/ui/FMAcquisitionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,306 copying build/lib/fibsem/ui/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,309 creating build/bdist.linux-armv7l/wheel/fibsem/ui/icons 2026-07-25T23:13:57,310 copying build/lib/fibsem/ui/icons/minus.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-07-25T23:13:57,311 copying build/lib/fibsem/ui/icons/check.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-07-25T23:13:57,313 copying build/lib/fibsem/ui/icons/chevron_down.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-07-25T23:13:57,315 copying build/lib/fibsem/ui/icons/plus.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-07-25T23:13:57,316 copying build/lib/fibsem/ui/icons/drag_handle.svg -> build/bdist.linux-armv7l/wheel/./fibsem/ui/icons 2026-07-25T23:13:57,318 copying build/lib/fibsem/ui/FibsemImageSettingsWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,321 copying build/lib/fibsem/ui/icon.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,322 copying build/lib/fibsem/ui/FibsemSegmentationModelWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,325 copying build/lib/fibsem/ui/FibsemUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,327 copying build/lib/fibsem/ui/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,328 copying build/lib/fibsem/ui/FibsemMovementWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,331 copying build/lib/fibsem/ui/FibsemLabellingUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,334 copying build/lib/fibsem/ui/FibsemCryoDepositionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,337 creating build/bdist.linux-armv7l/wheel/fibsem/ui/qtdesigner_files 2026-07-25T23:13:57,338 copying build/lib/fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-25T23:13:57,340 copying build/lib/fibsem/ui/qtdesigner_files/FibsemUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qtdesigner_files 2026-07-25T23:13:57,342 creating build/bdist.linux-armv7l/wheel/fibsem/ui/napari 2026-07-25T23:13:57,343 copying build/lib/fibsem/ui/napari/utilities.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-07-25T23:13:57,346 copying build/lib/fibsem/ui/napari/properties.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-07-25T23:13:57,348 copying build/lib/fibsem/ui/napari/patterns.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/napari 2026-07-25T23:13:57,351 copying build/lib/fibsem/ui/FibsemMinimapWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,357 creating build/bdist.linux-armv7l/wheel/fibsem/ui/fm 2026-07-25T23:13:57,359 creating build/bdist.linux-armv7l/wheel/fibsem/ui/fm/widgets 2026-07-25T23:13:57,360 copying build/lib/fibsem/ui/fm/widgets/line_plot_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,363 copying build/lib/fibsem/ui/fm/widgets/autofocus_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,365 copying build/lib/fibsem/ui/fm/widgets/overview_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,368 copying build/lib/fibsem/ui/fm/widgets/camera_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,370 copying build/lib/fibsem/ui/fm/widgets/test_line_plot.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,372 copying build/lib/fibsem/ui/fm/widgets/acquisition_summary_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,374 copying build/lib/fibsem/ui/fm/widgets/channel_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,376 copying build/lib/fibsem/ui/fm/widgets/fluorescence_plot_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,379 copying build/lib/fibsem/ui/fm/widgets/display_options_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,380 copying build/lib/fibsem/ui/fm/widgets/overview_confirmation_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,383 copying build/lib/fibsem/ui/fm/widgets/objective_control_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,385 copying build/lib/fibsem/ui/fm/widgets/stage_position_control_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,387 copying build/lib/fibsem/ui/fm/widgets/saved_positions_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,390 copying build/lib/fibsem/ui/fm/widgets/load_image_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,392 copying build/lib/fibsem/ui/fm/widgets/fm_multi_channel_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,394 copying build/lib/fibsem/ui/fm/widgets/z_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,397 copying build/lib/fibsem/ui/fm/widgets/histogram_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,399 copying build/lib/fibsem/ui/fm/widgets/minimap_plot_widget_example.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,402 copying build/lib/fibsem/ui/fm/widgets/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,404 copying build/lib/fibsem/ui/fm/widgets/test_channel_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,406 copying build/lib/fibsem/ui/fm/widgets/sem_acquisition_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,408 copying build/lib/fibsem/ui/fm/widgets/channel_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,411 copying build/lib/fibsem/ui/fm/widgets/autofocus_widget_demo.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,413 copying build/lib/fibsem/ui/fm/widgets/fm_image_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,415 copying build/lib/fibsem/ui/fm/widgets/minimap_plot_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/fm/widgets 2026-07-25T23:13:57,418 copying build/lib/fibsem/ui/stylesheets.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,421 copying build/lib/fibsem/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,424 copying build/lib/fibsem/ui/FibsemSpotBurnWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,427 copying build/lib/fibsem/ui/FibsemSystemSetupWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,430 copying build/lib/fibsem/ui/FibsemEmbeddedDetectionWidget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,435 creating build/bdist.linux-armv7l/wheel/fibsem/ui/widgets 2026-07-25T23:13:57,436 copying build/lib/fibsem/ui/widgets/autolamella_apply_protocol_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,439 copying build/lib/fibsem/ui/widgets/fibsem_image_flow_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,442 copying build/lib/fibsem/ui/widgets/autolamella_spot_burn_coordinates_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,445 copying build/lib/fibsem/ui/widgets/saved_position_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,449 copying build/lib/fibsem/ui/widgets/autolamella_create_experiment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,452 copying build/lib/fibsem/ui/widgets/workflow_task_editor_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,455 copying build/lib/fibsem/ui/widgets/autolamella_load_task_protocol_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,458 copying build/lib/fibsem/ui/widgets/lamella_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,461 copying build/lib/fibsem/ui/widgets/workflow_info_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,464 copying build/lib/fibsem/ui/widgets/lamella_pose_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,467 copying build/lib/fibsem/ui/widgets/lamella_default_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,470 copying build/lib/fibsem/ui/widgets/dataframe_table_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,472 copying build/lib/fibsem/ui/widgets/preferences_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,476 copying build/lib/fibsem/ui/widgets/hook_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,478 copying build/lib/fibsem/ui/widgets/milling_stages_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,481 copying build/lib/fibsem/ui/widgets/autolamella_protocol_information_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,484 copying build/lib/fibsem/ui/widgets/milling_task_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,487 copying build/lib/fibsem/ui/widgets/image_annotation_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,490 copying build/lib/fibsem/ui/widgets/image_canvas.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,494 copying build/lib/fibsem/ui/widgets/milling_alignment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,497 copying build/lib/fibsem/ui/widgets/lamella_workflow_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,500 copying build/lib/fibsem/ui/widgets/profile_line.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,503 copying build/lib/fibsem/ui/widgets/custom_widgets.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,506 copying build/lib/fibsem/ui/widgets/workflow_timeline_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,509 copying build/lib/fibsem/ui/widgets/strategy_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,512 copying build/lib/fibsem/ui/widgets/autolamella_task_config_editor.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,516 copying build/lib/fibsem/ui/widgets/beam_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,519 copying build/lib/fibsem/ui/widgets/zoom_loupe.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,521 copying build/lib/fibsem/ui/widgets/progress_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,524 copying build/lib/fibsem/ui/widgets/workflow_summary_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,527 copying build/lib/fibsem/ui/widgets/microscope_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,530 copying build/lib/fibsem/ui/widgets/overview_acquisition_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,533 copying build/lib/fibsem/ui/widgets/contrast_gamma_control.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,536 copying build/lib/fibsem/ui/widgets/autolamella_load_experiment_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,539 copying build/lib/fibsem/ui/widgets/pattern_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,542 copying build/lib/fibsem/ui/widgets/annotation_pin.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,545 copying build/lib/fibsem/ui/widgets/milling_stage_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,548 copying build/lib/fibsem/ui/widgets/beam_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,550 copying build/lib/fibsem/ui/widgets/autolamella_task_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,554 copying build/lib/fibsem/ui/widgets/milling_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,556 copying build/lib/fibsem/ui/widgets/image_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,561 creating build/bdist.linux-armv7l/wheel/fibsem/ui/widgets/tests 2026-07-25T23:13:57,562 copying build/lib/fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,564 copying build/lib/fibsem/ui/widgets/tests/test_milling_stage_list.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,567 copying build/lib/fibsem/ui/widgets/tests/test-spinner-icon.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,569 copying build/lib/fibsem/ui/widgets/tests/test-selected-lamella.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,572 copying build/lib/fibsem/ui/widgets/tests/test-progress-bar.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,574 copying build/lib/fibsem/ui/widgets/tests/test-image-settings-widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,576 copying build/lib/fibsem/ui/widgets/tests/test_workflow_timeline_animation.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,579 copying build/lib/fibsem/ui/widgets/tests/test-workflow-config.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,581 copying build/lib/fibsem/ui/widgets/tests/test_pattern_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,584 copying build/lib/fibsem/ui/widgets/tests/test_lamella_task_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,586 copying build/lib/fibsem/ui/widgets/tests/test-lamella-list.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,588 copying build/lib/fibsem/ui/widgets/tests/test_qt_threading.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,591 copying build/lib/fibsem/ui/widgets/tests/test_workflow_task_editor_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,593 copying build/lib/fibsem/ui/widgets/tests/test-lamella-workflow.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,596 copying build/lib/fibsem/ui/widgets/tests/test_drag_distance.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,598 copying build/lib/fibsem/ui/widgets/tests/test_lamella_name_list_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,600 copying build/lib/fibsem/ui/widgets/tests/test_radial_menu.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,603 copying build/lib/fibsem/ui/widgets/tests/test_radial_ruler_demo.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,606 copying build/lib/fibsem/ui/widgets/tests/test_splitter_layouts.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,608 copying build/lib/fibsem/ui/widgets/tests/test_milling_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,611 copying build/lib/fibsem/ui/widgets/tests/test_lamella_default_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,613 copying build/lib/fibsem/ui/widgets/tests/test_alignment_plot_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,615 copying build/lib/fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,618 copying build/lib/fibsem/ui/widgets/tests/test_alignment_comparison.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,620 copying build/lib/fibsem/ui/widgets/tests/test_milling_task_config_widget2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,622 copying build/lib/fibsem/ui/widgets/tests/test_milling_stages_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,624 copying build/lib/fibsem/ui/widgets/tests/test_hooks_manual.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,626 copying build/lib/fibsem/ui/widgets/tests/test_saved_position_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,628 copying build/lib/fibsem/ui/widgets/tests/test_progress_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,630 copying build/lib/fibsem/ui/widgets/tests/test_image_canvas.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,632 copying build/lib/fibsem/ui/widgets/tests/test_countdown_progress.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,634 copying build/lib/fibsem/ui/widgets/tests/test_toast.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,635 copying build/lib/fibsem/ui/widgets/tests/test-lamella-card.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,637 copying build/lib/fibsem/ui/widgets/tests/test-icon-tool-button.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets/tests 2026-07-25T23:13:57,640 copying build/lib/fibsem/ui/widgets/autolamella_overview_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,642 copying build/lib/fibsem/ui/widgets/drag_distance.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,644 copying build/lib/fibsem/ui/widgets/detector_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,647 copying build/lib/fibsem/ui/widgets/radial_menu.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,649 copying build/lib/fibsem/ui/widgets/dual_beam_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,652 copying build/lib/fibsem/ui/widgets/milling_task_acquisition_settings_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,654 copying build/lib/fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,656 copying build/lib/fibsem/ui/widgets/reference_image_parameters_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,659 copying build/lib/fibsem/ui/widgets/fluorescence_control_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,662 copying build/lib/fibsem/ui/widgets/notifications.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,665 copying build/lib/fibsem/ui/widgets/lamella_card_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,667 copying build/lib/fibsem/ui/widgets/lamella_task_image_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,669 copying build/lib/fibsem/ui/widgets/milling_task_config_widget2.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,671 copying build/lib/fibsem/ui/widgets/hud_ticker.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,673 copying build/lib/fibsem/ui/widgets/autolamella_generate_report_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,676 copying build/lib/fibsem/ui/widgets/bug_report_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,678 copying build/lib/fibsem/ui/widgets/milling_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,680 copying build/lib/fibsem/ui/widgets/fluorescence_coincidence_viewer_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,684 copying build/lib/fibsem/ui/widgets/tiled_overview_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,686 copying build/lib/fibsem/ui/widgets/selected_lamella_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,689 copying build/lib/fibsem/ui/widgets/task_summary_formatting.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,690 copying build/lib/fibsem/ui/widgets/autolamella_global_task_editor_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,693 copying build/lib/fibsem/ui/widgets/workflow_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,695 copying build/lib/fibsem/ui/widgets/angle_measure.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,698 copying build/lib/fibsem/ui/widgets/task_history_table_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,700 copying build/lib/fibsem/ui/widgets/sample_holder_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,702 copying build/lib/fibsem/ui/widgets/autolamella_lamella_protocol_editor.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/widgets 2026-07-25T23:13:57,705 creating build/bdist.linux-armv7l/wheel/fibsem/ui/qt 2026-07-25T23:13:57,707 copying build/lib/fibsem/ui/qt/threading.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qt 2026-07-25T23:13:57,709 copying build/lib/fibsem/ui/qt/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui/qt 2026-07-25T23:13:57,711 copying build/lib/fibsem/ui/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/ui 2026-07-25T23:13:57,713 copying build/lib/fibsem/movement.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:57,715 creating build/bdist.linux-armv7l/wheel/fibsem/util 2026-07-25T23:13:57,716 copying build/lib/fibsem/util/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-07-25T23:13:57,718 copying build/lib/fibsem/util/draw_numbers.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-07-25T23:13:57,720 copying build/lib/fibsem/util/filename.py -> build/bdist.linux-armv7l/wheel/./fibsem/util 2026-07-25T23:13:57,723 creating build/bdist.linux-armv7l/wheel/fibsem/imaging 2026-07-25T23:13:57,724 copying build/lib/fibsem/imaging/drawing.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-25T23:13:57,726 copying build/lib/fibsem/imaging/tiled.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-25T23:13:57,729 copying build/lib/fibsem/imaging/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-25T23:13:57,730 copying build/lib/fibsem/imaging/masks.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-25T23:13:57,733 copying build/lib/fibsem/imaging/transforms.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-25T23:13:57,735 creating build/bdist.linux-armv7l/wheel/fibsem/imaging/tests 2026-07-25T23:13:57,736 copying build/lib/fibsem/imaging/tests/test_tile_order_strategies.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging/tests 2026-07-25T23:13:57,738 copying build/lib/fibsem/imaging/tests/test_drawing_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging/tests 2026-07-25T23:13:57,740 copying build/lib/fibsem/imaging/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging/tests 2026-07-25T23:13:57,741 copying build/lib/fibsem/imaging/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-25T23:13:57,743 copying build/lib/fibsem/imaging/spot.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-25T23:13:57,745 copying build/lib/fibsem/imaging/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/imaging 2026-07-25T23:13:57,748 creating build/bdist.linux-armv7l/wheel/fibsem/fm 2026-07-25T23:13:57,749 copying build/lib/fibsem/fm/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,751 copying build/lib/fibsem/fm/timing.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,753 copying build/lib/fibsem/fm/plotting.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,756 creating build/bdist.linux-armv7l/wheel/fibsem/fm/calibration 2026-07-25T23:13:57,757 copying build/lib/fibsem/fm/calibration/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm/calibration 2026-07-25T23:13:57,759 copying build/lib/fibsem/fm/plot_autofocus_demo.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,761 copying build/lib/fibsem/fm/fm-example-notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,764 copying build/lib/fibsem/fm/autoscript.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,766 copying build/lib/fibsem/fm/fm-notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,769 copying build/lib/fibsem/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,771 copying build/lib/fibsem/fm/odemis.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,773 copying build/lib/fibsem/fm/acquisition.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,777 copying build/lib/fibsem/fm/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,780 copying build/lib/fibsem/fm/microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem/fm 2026-07-25T23:13:57,783 copying build/lib/fibsem/constants.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:57,785 creating build/bdist.linux-armv7l/wheel/fibsem/alignment 2026-07-25T23:13:57,786 copying build/lib/fibsem/alignment/methods.py -> build/bdist.linux-armv7l/wheel/./fibsem/alignment 2026-07-25T23:13:57,789 copying build/lib/fibsem/alignment/plotting.py -> build/bdist.linux-armv7l/wheel/./fibsem/alignment 2026-07-25T23:13:57,791 copying build/lib/fibsem/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/alignment 2026-07-25T23:13:57,795 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation 2026-07-25T23:13:57,796 copying build/lib/fibsem/segmentation/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,798 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs 2026-07-25T23:13:57,799 copying build/lib/fibsem/segmentation/docs/example_napari.png -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs 2026-07-25T23:13:57,855 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs 2026-07-25T23:13:57,856 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/combined 2026-07-25T23:13:57,858 copying build/lib/fibsem/segmentation/docs/imgs/combined/combined.jpg -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/combined 2026-07-25T23:13:57,879 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/labelled 2026-07-25T23:13:57,880 copying build/lib/fibsem/segmentation/docs/imgs/labelled/label.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/labelled 2026-07-25T23:13:57,905 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/docs/imgs/raw 2026-07-25T23:13:57,906 copying build/lib/fibsem/segmentation/docs/imgs/raw/image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/docs/imgs/raw 2026-07-25T23:13:57,938 copying build/lib/fibsem/segmentation/config-autolamella-waffle4.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,939 copying build/lib/fibsem/segmentation/adaptive_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,941 copying build/lib/fibsem/segmentation/onnx_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,944 copying build/lib/fibsem/segmentation/huggingface.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,946 copying build/lib/fibsem/segmentation/_nnunet.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,949 copying build/lib/fibsem/segmentation/requirements.txt -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,951 copying build/lib/fibsem/segmentation/example.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,955 copying build/lib/fibsem/segmentation/config-autolamella-mega-v5.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,957 copying build/lib/fibsem/segmentation/config.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,959 copying build/lib/fibsem/segmentation/nnunet_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,961 copying build/lib/fibsem/segmentation/model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,964 copying build/lib/fibsem/segmentation/dataset.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,966 copying build/lib/fibsem/segmentation/inference.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,969 creating build/bdist.linux-armv7l/wheel/fibsem/segmentation/models 2026-07-25T23:13:57,971 copying build/lib/fibsem/segmentation/models/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation/models 2026-07-25T23:13:57,973 copying build/lib/fibsem/segmentation/hf_segmentation_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,975 copying build/lib/fibsem/segmentation/train.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,978 copying build/lib/fibsem/segmentation/augmentation.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,981 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,983 copying build/lib/fibsem/segmentation/segmentation_config.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,985 copying build/lib/fibsem/segmentation/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,987 copying build/lib/fibsem/segmentation/config-autolamella-mega-v4-xl.yml -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,989 copying build/lib/fibsem/segmentation/nnunet_model_v2.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,991 copying build/lib/fibsem/segmentation/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,994 copying build/lib/fibsem/segmentation/sam_model.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:57,996 copying build/lib/fibsem/segmentation/test_image.tif -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:58,025 copying build/lib/fibsem/segmentation/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem/segmentation 2026-07-25T23:13:58,028 copying build/lib/fibsem/logo.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:58,030 creating build/bdist.linux-armv7l/wheel/fibsem/server 2026-07-25T23:13:58,032 copying build/lib/fibsem/server/client.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-25T23:13:58,034 copying build/lib/fibsem/server/GAPS.md -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-25T23:13:58,037 copying build/lib/fibsem/server/server.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-25T23:13:58,040 copying build/lib/fibsem/server/models.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-25T23:13:58,042 copying build/lib/fibsem/server/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-25T23:13:58,044 copying build/lib/fibsem/server/README.md -> build/bdist.linux-armv7l/wheel/./fibsem/server 2026-07-25T23:13:58,047 copying build/lib/fibsem/acquire.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:58,050 creating build/bdist.linux-armv7l/wheel/fibsem/config 2026-07-25T23:13:58,051 copying build/lib/fibsem/config/sim-arctis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-25T23:13:58,054 copying build/lib/fibsem/config/tfs-arctis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-25T23:13:58,056 copying build/lib/fibsem/config/tescan_manipulator.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-25T23:13:58,058 copying build/lib/fibsem/config/odemis-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-25T23:13:58,061 copying build/lib/fibsem/config/default-sample-holder.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-25T23:13:58,063 copying build/lib/fibsem/config/tfs-aquilos2-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-25T23:13:58,066 copying build/lib/fibsem/config/tescan-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-25T23:13:58,069 creating build/bdist.linux-armv7l/wheel/fibsem/config/fm 2026-07-25T23:13:58,070 copying build/lib/fibsem/config/fm/fm-configuration-default.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config/fm 2026-07-25T23:13:58,072 copying build/lib/fibsem/config/tfs-hydra-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-25T23:13:58,075 copying build/lib/fibsem/config/sample-holder.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-25T23:13:58,077 copying build/lib/fibsem/config/microscope-configuration.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/config 2026-07-25T23:13:58,079 copying build/lib/fibsem/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:58,082 creating build/bdist.linux-armv7l/wheel/fibsem/applications 2026-07-25T23:13:58,084 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella 2026-07-25T23:13:58,085 copying build/lib/fibsem/applications/autolamella/config.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-07-25T23:13:58,088 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/protocol 2026-07-25T23:13:58,089 copying build/lib/fibsem/applications/autolamella/protocol/task-protocol.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-25T23:13:58,092 copying build/lib/fibsem/applications/autolamella/protocol/.gitkeep -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-25T23:13:58,094 copying build/lib/fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-25T23:13:58,096 copying build/lib/fibsem/applications/autolamella/protocol/constants.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-25T23:13:58,098 copying build/lib/fibsem/applications/autolamella/protocol/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-25T23:13:58,100 copying build/lib/fibsem/applications/autolamella/protocol/legacy.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-25T23:13:58,103 copying build/lib/fibsem/applications/autolamella/protocol/validation.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol 2026-07-25T23:13:58,106 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/protocol/development 2026-07-25T23:13:58,108 copying build/lib/fibsem/applications/autolamella/protocol/development/task-protocol-coincidence.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/development 2026-07-25T23:13:58,111 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:58,113 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:58,115 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:58,118 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:58,120 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:58,122 copying build/lib/fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/protocol/legacy 2026-07-25T23:13:58,125 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows 2026-07-25T23:13:58,126 copying build/lib/fibsem/applications/autolamella/workflows/core.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-07-25T23:13:58,129 copying build/lib/fibsem/applications/autolamella/workflows/_default_milling_config.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-07-25T23:13:58,131 copying build/lib/fibsem/applications/autolamella/workflows/ui.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows 2026-07-25T23:13:58,133 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,135 copying build/lib/fibsem/applications/autolamella/workflows/tasks/acquire_fluorescence.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,137 copying build/lib/fibsem/applications/autolamella/workflows/tasks/tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,139 copying build/lib/fibsem/applications/autolamella/workflows/tasks/rough.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,141 copying build/lib/fibsem/applications/autolamella/workflows/tasks/hooks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,143 copying build/lib/fibsem/applications/autolamella/workflows/tasks/basic_milling.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,145 copying build/lib/fibsem/applications/autolamella/workflows/tasks/grid-task-notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,147 copying build/lib/fibsem/applications/autolamella/workflows/tasks/trench.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,149 copying build/lib/fibsem/applications/autolamella/workflows/tasks/polishing.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,151 copying build/lib/fibsem/applications/autolamella/workflows/tasks/select_position.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,153 copying build/lib/fibsem/applications/autolamella/workflows/tasks/test_hooks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,156 copying build/lib/fibsem/applications/autolamella/workflows/tasks/manager.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,158 copying build/lib/fibsem/applications/autolamella/workflows/tasks/grid_tasks.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,160 copying build/lib/fibsem/applications/autolamella/workflows/tasks/spot_burn.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,162 copying build/lib/fibsem/applications/autolamella/workflows/tasks/mill_coincident.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,164 copying build/lib/fibsem/applications/autolamella/workflows/tasks/undercut.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,167 copying build/lib/fibsem/applications/autolamella/workflows/tasks/queue.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,169 copying build/lib/fibsem/applications/autolamella/workflows/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,171 copying build/lib/fibsem/applications/autolamella/workflows/tasks/fiducial.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,173 copying build/lib/fibsem/applications/autolamella/workflows/tasks/select_fluorescence_position.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,175 copying build/lib/fibsem/applications/autolamella/workflows/tasks/base.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,177 copying build/lib/fibsem/applications/autolamella/workflows/tasks/reference_image.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/tasks 2026-07-25T23:13:58,180 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/workflows/legacy 2026-07-25T23:13:58,181 copying build/lib/fibsem/applications/autolamella/workflows/legacy/serial.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-07-25T23:13:58,184 copying build/lib/fibsem/applications/autolamella/workflows/legacy/autoliftout.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-07-25T23:13:58,187 copying build/lib/fibsem/applications/autolamella/workflows/legacy/experimental.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/workflows/legacy 2026-07-25T23:13:58,190 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/ui 2026-07-25T23:13:58,191 copying build/lib/fibsem/applications/autolamella/ui/AutoLamellaMainUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-07-25T23:13:58,194 copying build/lib/fibsem/applications/autolamella/ui/autolamella_fluorescence_acquisition_task_config_widget.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-07-25T23:13:58,197 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/ui/tests 2026-07-25T23:13:58,198 copying build/lib/fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui/tests 2026-07-25T23:13:58,200 copying build/lib/fibsem/applications/autolamella/ui/AutoLamellaUI.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-07-25T23:13:58,203 copying build/lib/fibsem/applications/autolamella/ui/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-07-25T23:13:58,205 copying build/lib/fibsem/applications/autolamella/ui/run_ui.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/ui 2026-07-25T23:13:58,207 copying build/lib/fibsem/applications/autolamella/task_manager_queue.md -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-07-25T23:13:58,210 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/compat 2026-07-25T23:13:58,211 copying build/lib/fibsem/applications/autolamella/compat/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/compat 2026-07-25T23:13:58,213 copying build/lib/fibsem/applications/autolamella/compat/odemis.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/compat 2026-07-25T23:13:58,215 copying build/lib/fibsem/applications/autolamella/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-07-25T23:13:58,217 creating build/bdist.linux-armv7l/wheel/fibsem/applications/autolamella/tools 2026-07-25T23:13:58,218 copying build/lib/fibsem/applications/autolamella/tools/reporting.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-25T23:13:58,221 copying build/lib/fibsem/applications/autolamella/tools/review.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-25T23:13:58,223 copying build/lib/fibsem/applications/autolamella/tools/stats.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-25T23:13:58,225 copying build/lib/fibsem/applications/autolamella/tools/upload_to_hf.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-25T23:13:58,227 copying build/lib/fibsem/applications/autolamella/tools/data.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-25T23:13:58,230 copying build/lib/fibsem/applications/autolamella/tools/notebook.ipynb -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-25T23:13:58,232 copying build/lib/fibsem/applications/autolamella/tools/bug_report.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-25T23:13:58,234 copying build/lib/fibsem/applications/autolamella/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella/tools 2026-07-25T23:13:58,236 copying build/lib/fibsem/applications/autolamella/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications/autolamella 2026-07-25T23:13:58,239 copying build/lib/fibsem/applications/__init__.py -> build/bdist.linux-armv7l/wheel/./fibsem/applications 2026-07-25T23:13:58,240 copying build/lib/fibsem/configuration.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:58,243 creating build/bdist.linux-armv7l/wheel/fibsem/tools 2026-07-25T23:13:58,244 copying build/lib/fibsem/tools/telemetry.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-25T23:13:58,246 copying build/lib/fibsem/tools/beam_shift_alignment_test.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-25T23:13:58,248 copying build/lib/fibsem/tools/run_split_dataset.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-25T23:13:58,250 copying build/lib/fibsem/tools/run_manipulator_calibration.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-25T23:13:58,252 copying build/lib/fibsem/tools/_streamlit.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-25T23:13:58,254 copying build/lib/fibsem/tools/_parser.py -> build/bdist.linux-armv7l/wheel/./fibsem/tools 2026-07-25T23:13:58,256 copying build/lib/fibsem/structures.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:58,260 copying build/lib/fibsem/conversions.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:58,262 copying build/lib/fibsem/gis.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:58,264 copying build/lib/fibsem/validation.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:58,266 copying build/lib/fibsem/utils.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:58,269 copying build/lib/fibsem/microscope.py -> build/bdist.linux-armv7l/wheel/./fibsem 2026-07-25T23:13:58,273 running install_egg_info 2026-07-25T23:13:58,280 Copying fibsem.egg-info to build/bdist.linux-armv7l/wheel/./fibsem-0.5.1-py3.11.egg-info 2026-07-25T23:13:58,292 running install_scripts 2026-07-25T23:13:58,303 creating build/bdist.linux-armv7l/wheel/fibsem-0.5.1.dist-info/WHEEL 2026-07-25T23:13:58,306 creating '/tmp/pip-wheel-jhn3h21w/.tmp-c2bwmimp/fibsem-0.5.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-07-25T23:13:58,309 adding 'fibsem/__init__.py' 2026-07-25T23:13:58,311 adding 'fibsem/acquire.py' 2026-07-25T23:13:58,312 adding 'fibsem/calibration.py' 2026-07-25T23:13:58,314 adding 'fibsem/cancellation.py' 2026-07-25T23:13:58,316 adding 'fibsem/cli.py' 2026-07-25T23:13:58,319 adding 'fibsem/config.py' 2026-07-25T23:13:58,321 adding 'fibsem/configuration.py' 2026-07-25T23:13:58,322 adding 'fibsem/constants.py' 2026-07-25T23:13:58,324 adding 'fibsem/conversions.py' 2026-07-25T23:13:58,326 adding 'fibsem/gis.py' 2026-07-25T23:13:58,328 adding 'fibsem/logo.py' 2026-07-25T23:13:58,354 adding 'fibsem/microscope.py' 2026-07-25T23:13:58,357 adding 'fibsem/movement.py' 2026-07-25T23:13:58,372 adding 'fibsem/structures.py' 2026-07-25T23:13:58,375 adding 'fibsem/transformations.py' 2026-07-25T23:13:58,378 adding 'fibsem/utils.py' 2026-07-25T23:13:58,381 adding 'fibsem/validation.py' 2026-07-25T23:13:58,385 adding 'fibsem/alignment/__init__.py' 2026-07-25T23:13:58,389 adding 'fibsem/alignment/methods.py' 2026-07-25T23:13:58,391 adding 'fibsem/alignment/plotting.py' 2026-07-25T23:13:58,393 adding 'fibsem/applications/__init__.py' 2026-07-25T23:13:58,395 adding 'fibsem/applications/autolamella/__init__.py' 2026-07-25T23:13:58,397 adding 'fibsem/applications/autolamella/config.py' 2026-07-25T23:13:58,406 adding 'fibsem/applications/autolamella/structures.py' 2026-07-25T23:13:58,409 adding 'fibsem/applications/autolamella/task_manager_queue.md' 2026-07-25T23:13:58,413 adding 'fibsem/applications/autolamella/compat/notebook.ipynb' 2026-07-25T23:13:58,415 adding 'fibsem/applications/autolamella/compat/odemis.py' 2026-07-25T23:13:58,417 adding 'fibsem/applications/autolamella/protocol/.gitkeep' 2026-07-25T23:13:58,418 adding 'fibsem/applications/autolamella/protocol/__init__.py' 2026-07-25T23:13:58,420 adding 'fibsem/applications/autolamella/protocol/constants.py' 2026-07-25T23:13:58,423 adding 'fibsem/applications/autolamella/protocol/legacy.py' 2026-07-25T23:13:58,425 adding 'fibsem/applications/autolamella/protocol/task-protocol-waffle.yaml' 2026-07-25T23:13:58,426 adding 'fibsem/applications/autolamella/protocol/task-protocol.yaml' 2026-07-25T23:13:58,428 adding 'fibsem/applications/autolamella/protocol/validation.py' 2026-07-25T23:13:58,430 adding 'fibsem/applications/autolamella/protocol/development/task-protocol-coincidence.yaml' 2026-07-25T23:13:58,432 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-liftout.yaml' 2026-07-25T23:13:58,433 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-on-grid.yaml' 2026-07-25T23:13:58,435 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-serial-liftout.yaml' 2026-07-25T23:13:58,436 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-trench.yaml' 2026-07-25T23:13:58,438 adding 'fibsem/applications/autolamella/protocol/legacy/protocol-waffle.yaml' 2026-07-25T23:13:58,440 adding 'fibsem/applications/autolamella/tools/__init__.py' 2026-07-25T23:13:58,442 adding 'fibsem/applications/autolamella/tools/bug_report.py' 2026-07-25T23:13:58,445 adding 'fibsem/applications/autolamella/tools/data.py' 2026-07-25T23:13:58,446 adding 'fibsem/applications/autolamella/tools/notebook.ipynb' 2026-07-25T23:13:58,450 adding 'fibsem/applications/autolamella/tools/reporting.py' 2026-07-25T23:13:58,451 adding 'fibsem/applications/autolamella/tools/review.py' 2026-07-25T23:13:58,454 adding 'fibsem/applications/autolamella/tools/stats.py' 2026-07-25T23:13:58,456 adding 'fibsem/applications/autolamella/tools/upload_to_hf.py' 2026-07-25T23:13:58,464 adding 'fibsem/applications/autolamella/ui/AutoLamellaMainUI.py' 2026-07-25T23:13:58,472 adding 'fibsem/applications/autolamella/ui/AutoLamellaUI.py' 2026-07-25T23:13:58,474 adding 'fibsem/applications/autolamella/ui/__init__.py' 2026-07-25T23:13:58,475 adding 'fibsem/applications/autolamella/ui/autolamella_fluorescence_acquisition_task_config_widget.py' 2026-07-25T23:13:58,476 adding 'fibsem/applications/autolamella/ui/run_ui.py' 2026-07-25T23:13:58,478 adding 'fibsem/applications/autolamella/ui/tests/test_confirm_run_workflow_dialog.py' 2026-07-25T23:13:58,480 adding 'fibsem/applications/autolamella/workflows/_default_milling_config.py' 2026-07-25T23:13:58,481 adding 'fibsem/applications/autolamella/workflows/core.py' 2026-07-25T23:13:58,483 adding 'fibsem/applications/autolamella/workflows/ui.py' 2026-07-25T23:13:58,489 adding 'fibsem/applications/autolamella/workflows/legacy/autoliftout.py' 2026-07-25T23:13:58,491 adding 'fibsem/applications/autolamella/workflows/legacy/experimental.py' 2026-07-25T23:13:58,495 adding 'fibsem/applications/autolamella/workflows/legacy/serial.py' 2026-07-25T23:13:58,497 adding 'fibsem/applications/autolamella/workflows/tasks/__init__.py' 2026-07-25T23:13:58,499 adding 'fibsem/applications/autolamella/workflows/tasks/acquire_fluorescence.py' 2026-07-25T23:13:58,502 adding 'fibsem/applications/autolamella/workflows/tasks/base.py' 2026-07-25T23:13:58,503 adding 'fibsem/applications/autolamella/workflows/tasks/basic_milling.py' 2026-07-25T23:13:58,505 adding 'fibsem/applications/autolamella/workflows/tasks/fiducial.py' 2026-07-25T23:13:58,506 adding 'fibsem/applications/autolamella/workflows/tasks/grid-task-notebook.ipynb' 2026-07-25T23:13:58,508 adding 'fibsem/applications/autolamella/workflows/tasks/grid_tasks.py' 2026-07-25T23:13:58,510 adding 'fibsem/applications/autolamella/workflows/tasks/hooks.py' 2026-07-25T23:13:58,512 adding 'fibsem/applications/autolamella/workflows/tasks/manager.py' 2026-07-25T23:13:58,514 adding 'fibsem/applications/autolamella/workflows/tasks/mill_coincident.py' 2026-07-25T23:13:58,515 adding 'fibsem/applications/autolamella/workflows/tasks/polishing.py' 2026-07-25T23:13:58,517 adding 'fibsem/applications/autolamella/workflows/tasks/queue.py' 2026-07-25T23:13:58,518 adding 'fibsem/applications/autolamella/workflows/tasks/reference_image.py' 2026-07-25T23:13:58,520 adding 'fibsem/applications/autolamella/workflows/tasks/rough.py' 2026-07-25T23:13:58,521 adding 'fibsem/applications/autolamella/workflows/tasks/select_fluorescence_position.py' 2026-07-25T23:13:58,523 adding 'fibsem/applications/autolamella/workflows/tasks/select_position.py' 2026-07-25T23:13:58,524 adding 'fibsem/applications/autolamella/workflows/tasks/spot_burn.py' 2026-07-25T23:13:58,526 adding 'fibsem/applications/autolamella/workflows/tasks/tasks.py' 2026-07-25T23:13:58,528 adding 'fibsem/applications/autolamella/workflows/tasks/test_hooks.py' 2026-07-25T23:13:58,529 adding 'fibsem/applications/autolamella/workflows/tasks/trench.py' 2026-07-25T23:13:58,531 adding 'fibsem/applications/autolamella/workflows/tasks/undercut.py' 2026-07-25T23:13:58,533 adding 'fibsem/autofunctions/__init__.py' 2026-07-25T23:13:58,534 adding 'fibsem/autofunctions/acb.py' 2026-07-25T23:13:58,537 adding 'fibsem/autofunctions/autofocus.py' 2026-07-25T23:13:58,538 adding 'fibsem/autofunctions/charge_neutralisation.py' 2026-07-25T23:13:58,540 adding 'fibsem/autofunctions/gamma.py' 2026-07-25T23:13:58,541 adding 'fibsem/autofunctions/integration.py' 2026-07-25T23:13:58,543 adding 'fibsem/autofunctions/metrics.py' 2026-07-25T23:13:58,545 adding 'fibsem/autofunctions/plotting.py' 2026-07-25T23:13:58,547 adding 'fibsem/autofunctions/stacking.py' 2026-07-25T23:13:58,548 adding 'fibsem/chat/.gitignore' 2026-07-25T23:13:58,549 adding 'fibsem/chat/main.py' 2026-07-25T23:13:58,550 adding 'fibsem/chat/requirements.txt' 2026-07-25T23:13:58,552 adding 'fibsem/config/default-sample-holder.yaml' 2026-07-25T23:13:58,554 adding 'fibsem/config/microscope-configuration.yaml' 2026-07-25T23:13:58,555 adding 'fibsem/config/odemis-configuration.yaml' 2026-07-25T23:13:58,556 adding 'fibsem/config/sample-holder.yaml' 2026-07-25T23:13:58,558 adding 'fibsem/config/sim-arctis-configuration.yaml' 2026-07-25T23:13:58,559 adding 'fibsem/config/tescan-configuration.yaml' 2026-07-25T23:13:58,560 adding 'fibsem/config/tescan_manipulator.yaml' 2026-07-25T23:13:58,562 adding 'fibsem/config/tfs-aquilos2-configuration.yaml' 2026-07-25T23:13:58,563 adding 'fibsem/config/tfs-arctis-configuration.yaml' 2026-07-25T23:13:58,565 adding 'fibsem/config/tfs-hydra-configuration.yaml' 2026-07-25T23:13:58,567 adding 'fibsem/config/fm/fm-configuration-default.yaml' 2026-07-25T23:13:58,568 adding 'fibsem/correlation/README.md' 2026-07-25T23:13:58,570 adding 'fibsem/correlation/__init__.py' 2026-07-25T23:13:58,572 adding 'fibsem/correlation/correlation_v2.py' 2026-07-25T23:13:58,575 adding 'fibsem/correlation/io.py' 2026-07-25T23:13:58,577 adding 'fibsem/correlation/refractive_index.py' 2026-07-25T23:13:58,579 adding 'fibsem/correlation/structures.py' 2026-07-25T23:13:58,581 adding 'fibsem/correlation/test_correlation_v2.py' 2026-07-25T23:13:58,584 adding 'fibsem/correlation/util.py' 2026-07-25T23:13:58,586 adding 'fibsem/correlation/pyto/__init__.py' 2026-07-25T23:13:58,591 adding 'fibsem/correlation/pyto/affine.py' 2026-07-25T23:13:58,594 adding 'fibsem/correlation/pyto/affine_2d.py' 2026-07-25T23:13:58,595 adding 'fibsem/correlation/pyto/attributes.py' 2026-07-25T23:13:58,598 adding 'fibsem/correlation/pyto/common.py' 2026-07-25T23:13:58,599 adding 'fibsem/correlation/pyto/points.py' 2026-07-25T23:13:58,605 adding 'fibsem/correlation/pyto/rigid_3d.py' 2026-07-25T23:13:58,607 adding 'fibsem/correlation/pyto/util.py' 2026-07-25T23:13:58,609 adding 'fibsem/correlation/pyto/test/test_affine.py' 2026-07-25T23:13:58,611 adding 'fibsem/correlation/pyto/test/test_affine_2d.py' 2026-07-25T23:13:58,615 adding 'fibsem/correlation/pyto/test/test_rigid_3d.py' 2026-07-25T23:13:58,617 adding 'fibsem/correlation/tests/__init__.py' 2026-07-25T23:13:58,618 adding 'fibsem/correlation/tests/eval_lut_precision.py' 2026-07-25T23:13:58,620 adding 'fibsem/correlation/tests/test_structures.py' 2026-07-25T23:13:58,622 adding 'fibsem/correlation/ui/__init__.py' 2026-07-25T23:13:58,623 adding 'fibsem/correlation/ui/widgets/__init__.py' 2026-07-25T23:13:58,626 adding 'fibsem/correlation/ui/widgets/coordinate_list_widget.py' 2026-07-25T23:13:58,628 adding 'fibsem/correlation/ui/widgets/correlation_result_widget.py' 2026-07-25T23:13:58,638 adding 'fibsem/correlation/ui/widgets/correlation_tab_widget.py' 2026-07-25T23:13:58,641 adding 'fibsem/correlation/ui/widgets/fm_image_display_widget.py' 2026-07-25T23:13:58,645 adding 'fibsem/correlation/ui/widgets/image_point_canvas.py' 2026-07-25T23:13:58,647 adding 'fibsem/correlation/ui/widgets/refractive_index_widget.py' 2026-07-25T23:13:58,648 adding 'fibsem/correlation/ui/widgets/test_correlation_tab_widget.py' 2026-07-25T23:13:58,650 adding 'fibsem/correlation/ui/widgets/test_fm_image_display_widget.py' 2026-07-25T23:13:58,652 adding 'fibsem/correlation/ui/widgets/test_image_point_canvas.py' 2026-07-25T23:13:58,654 adding 'fibsem/detection/__init__.py' 2026-07-25T23:13:58,655 adding 'fibsem/detection/config-autolamella-liftout-hf-mega.yaml' 2026-07-25T23:13:58,656 adding 'fibsem/detection/config-autolamella-liftout.yaml' 2026-07-25T23:13:58,657 adding 'fibsem/detection/config-autolamella-serial-liftout-hf-mega.yaml' 2026-07-25T23:13:58,659 adding 'fibsem/detection/config-autolamella-serial-liftout.yaml' 2026-07-25T23:13:58,660 adding 'fibsem/detection/config-autolamella-waffle-v2-hf-mega.yaml' 2026-07-25T23:13:58,661 adding 'fibsem/detection/config-autolamella-waffle-v2.yaml' 2026-07-25T23:13:58,662 adding 'fibsem/detection/config-autolamella-waffle.yml' 2026-07-25T23:13:58,663 adding 'fibsem/detection/config-autoliftout-dm-embryo.yml' 2026-07-25T23:13:58,669 adding 'fibsem/detection/detection.py' 2026-07-25T23:13:58,672 adding 'fibsem/detection/evaluation.py' 2026-07-25T23:13:58,673 adding 'fibsem/detection/run_evaluation.py' 2026-07-25T23:13:59,094 adding 'fibsem/detection/test_image.tif' 2026-07-25T23:13:59,389 adding 'fibsem/detection/test_image_2.tif' 2026-07-25T23:13:59,401 adding 'fibsem/detection/utils.py' 2026-07-25T23:13:59,403 adding 'fibsem/detection/test_images/test_needle_mask.tif' 2026-07-25T23:13:59,405 adding 'fibsem/detection/test_images/test_needle_mask2.tif' 2026-07-25T23:13:59,406 adding 'fibsem/detection/test_images/test_needle_mask3.tif' 2026-07-25T23:13:59,409 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_00.tif' 2026-07-25T23:13:59,412 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_01.tif' 2026-07-25T23:13:59,415 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_02.tif' 2026-07-25T23:13:59,417 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_03.tif' 2026-07-25T23:13:59,419 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_04.tif' 2026-07-25T23:13:59,421 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_05.tif' 2026-07-25T23:13:59,424 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_06.tif' 2026-07-25T23:13:59,427 adding 'fibsem/detection/test_images/serial/serial_liftout_mask_07.tif' 2026-07-25T23:13:59,429 adding 'fibsem/fm/__init__.py' 2026-07-25T23:13:59,435 adding 'fibsem/fm/acquisition.py' 2026-07-25T23:13:59,439 adding 'fibsem/fm/autoscript.py' 2026-07-25T23:13:59,440 adding 'fibsem/fm/config.py' 2026-07-25T23:13:59,443 adding 'fibsem/fm/fm-example-notebook.ipynb' 2026-07-25T23:13:59,446 adding 'fibsem/fm/fm-notebook.ipynb' 2026-07-25T23:13:59,450 adding 'fibsem/fm/microscope.py' 2026-07-25T23:13:59,453 adding 'fibsem/fm/odemis.py' 2026-07-25T23:13:59,455 adding 'fibsem/fm/plot_autofocus_demo.py' 2026-07-25T23:13:59,457 adding 'fibsem/fm/plotting.py' 2026-07-25T23:13:59,464 adding 'fibsem/fm/structures.py' 2026-07-25T23:13:59,466 adding 'fibsem/fm/timing.py' 2026-07-25T23:13:59,469 adding 'fibsem/fm/calibration/__init__.py' 2026-07-25T23:13:59,471 adding 'fibsem/imaging/.gitkeep' 2026-07-25T23:13:59,472 adding 'fibsem/imaging/__init__.py' 2026-07-25T23:13:59,474 adding 'fibsem/imaging/drawing.py' 2026-07-25T23:13:59,476 adding 'fibsem/imaging/masks.py' 2026-07-25T23:13:59,477 adding 'fibsem/imaging/spot.py' 2026-07-25T23:13:59,482 adding 'fibsem/imaging/tiled.py' 2026-07-25T23:13:59,484 adding 'fibsem/imaging/transforms.py' 2026-07-25T23:13:59,485 adding 'fibsem/imaging/utils.py' 2026-07-25T23:13:59,487 adding 'fibsem/imaging/tests/__init__.py' 2026-07-25T23:13:59,489 adding 'fibsem/imaging/tests/test_drawing_widget.py' 2026-07-25T23:13:59,490 adding 'fibsem/imaging/tests/test_tile_order_strategies.py' 2026-07-25T23:13:59,493 adding 'fibsem/microscopes/_stage.py' 2026-07-25T23:13:59,495 adding 'fibsem/microscopes/autoscript.py' 2026-07-25T23:13:59,496 adding 'fibsem/microscopes/notebook.ipynb' 2026-07-25T23:13:59,500 adding 'fibsem/microscopes/odemis_microscope.py' 2026-07-25T23:13:59,506 adding 'fibsem/microscopes/simulator.py' 2026-07-25T23:13:59,514 adding 'fibsem/microscopes/tescan.py' 2026-07-25T23:13:59,515 adding 'fibsem/microscopes/zeiss.py' 2026-07-25T23:13:59,517 adding 'fibsem/milling/__init__.py' 2026-07-25T23:13:59,519 adding 'fibsem/milling/base.py' 2026-07-25T23:13:59,520 adding 'fibsem/milling/config.py' 2026-07-25T23:13:59,521 adding 'fibsem/milling/core.py' 2026-07-25T23:13:59,523 adding 'fibsem/milling/properties.py' 2026-07-25T23:13:59,525 adding 'fibsem/milling/tasks.py' 2026-07-25T23:13:59,528 adding 'fibsem/milling/patterning/__init__.py' 2026-07-25T23:13:59,532 adding 'fibsem/milling/patterning/patterns2.py' 2026-07-25T23:13:59,537 adding 'fibsem/milling/patterning/plotting.py' 2026-07-25T23:13:59,539 adding 'fibsem/milling/patterning/utils.py' 2026-07-25T23:13:59,541 adding 'fibsem/milling/strategy/__init__.py' 2026-07-25T23:13:59,544 adding 'fibsem/milling/strategy/coincidence.py' 2026-07-25T23:13:59,546 adding 'fibsem/milling/strategy/overtilt.py' 2026-07-25T23:13:59,547 adding 'fibsem/milling/strategy/standard.py' 2026-07-25T23:13:59,550 adding 'fibsem/segmentation/README.md' 2026-07-25T23:13:59,551 adding 'fibsem/segmentation/__init__.py' 2026-07-25T23:13:59,553 adding 'fibsem/segmentation/_nnunet.py' 2026-07-25T23:13:59,554 adding 'fibsem/segmentation/adaptive_model.py' 2026-07-25T23:13:59,556 adding 'fibsem/segmentation/augmentation.ipynb' 2026-07-25T23:13:59,557 adding 'fibsem/segmentation/config-autolamella-mega-v4-xl.yml' 2026-07-25T23:13:59,558 adding 'fibsem/segmentation/config-autolamella-mega-v4.yml' 2026-07-25T23:13:59,560 adding 'fibsem/segmentation/config-autolamella-mega-v5.yml' 2026-07-25T23:13:59,561 adding 'fibsem/segmentation/config-autolamella-waffle4.yml' 2026-07-25T23:13:59,562 adding 'fibsem/segmentation/config.py' 2026-07-25T23:13:59,563 adding 'fibsem/segmentation/config.yml' 2026-07-25T23:13:59,565 adding 'fibsem/segmentation/dataset.py' 2026-07-25T23:13:59,576 adding 'fibsem/segmentation/example.ipynb' 2026-07-25T23:13:59,578 adding 'fibsem/segmentation/hf_segmentation_model.py' 2026-07-25T23:13:59,581 adding 'fibsem/segmentation/huggingface.ipynb' 2026-07-25T23:13:59,582 adding 'fibsem/segmentation/inference.py' 2026-07-25T23:13:59,584 adding 'fibsem/segmentation/model.py' 2026-07-25T23:13:59,586 adding 'fibsem/segmentation/nnunet_model.py' 2026-07-25T23:13:59,587 adding 'fibsem/segmentation/nnunet_model_v2.py' 2026-07-25T23:13:59,589 adding 'fibsem/segmentation/onnx_model.py' 2026-07-25T23:13:59,591 adding 'fibsem/segmentation/requirements.txt' 2026-07-25T23:13:59,592 adding 'fibsem/segmentation/sam_model.py' 2026-07-25T23:13:59,593 adding 'fibsem/segmentation/segmentation_config.yaml' 2026-07-25T23:13:59,743 adding 'fibsem/segmentation/test_image.tif' 2026-07-25T23:13:59,754 adding 'fibsem/segmentation/train.py' 2026-07-25T23:13:59,756 adding 'fibsem/segmentation/utils.py' 2026-07-25T23:14:00,114 adding 'fibsem/segmentation/docs/example_napari.png' 2026-07-25T23:14:00,273 adding 'fibsem/segmentation/docs/imgs/combined/combined.jpg' 2026-07-25T23:14:00,324 adding 'fibsem/segmentation/docs/imgs/labelled/label.tif' 2026-07-25T23:14:00,490 adding 'fibsem/segmentation/docs/imgs/raw/image.tif' 2026-07-25T23:14:00,501 adding 'fibsem/segmentation/models/.gitkeep' 2026-07-25T23:14:00,503 adding 'fibsem/server/GAPS.md' 2026-07-25T23:14:00,504 adding 'fibsem/server/README.md' 2026-07-25T23:14:00,506 adding 'fibsem/server/__init__.py' 2026-07-25T23:14:00,508 adding 'fibsem/server/client.py' 2026-07-25T23:14:00,509 adding 'fibsem/server/models.py' 2026-07-25T23:14:00,511 adding 'fibsem/server/server.py' 2026-07-25T23:14:00,514 adding 'fibsem/tools/_parser.py' 2026-07-25T23:14:00,515 adding 'fibsem/tools/_streamlit.py' 2026-07-25T23:14:00,516 adding 'fibsem/tools/beam_shift_alignment_test.py' 2026-07-25T23:14:00,518 adding 'fibsem/tools/run_manipulator_calibration.py' 2026-07-25T23:14:00,519 adding 'fibsem/tools/run_split_dataset.py' 2026-07-25T23:14:00,520 adding 'fibsem/tools/telemetry.py' 2026-07-25T23:14:00,522 adding 'fibsem/ui/.gitkeep' 2026-07-25T23:14:00,531 adding 'fibsem/ui/FMAcquisitionWidget.py' 2026-07-25T23:14:00,533 adding 'fibsem/ui/FibsemCryoDepositionWidget.py' 2026-07-25T23:14:00,535 adding 'fibsem/ui/FibsemEmbeddedDetectionWidget.py' 2026-07-25T23:14:00,539 adding 'fibsem/ui/FibsemImageSettingsWidget.py' 2026-07-25T23:14:00,543 adding 'fibsem/ui/FibsemLabellingUI.py' 2026-07-25T23:14:00,545 adding 'fibsem/ui/FibsemManipulatorWidget.py' 2026-07-25T23:14:00,552 adding 'fibsem/ui/FibsemMinimapWidget.py' 2026-07-25T23:14:00,555 adding 'fibsem/ui/FibsemMovementWidget.py' 2026-07-25T23:14:00,556 adding 'fibsem/ui/FibsemSegmentationModelWidget.py' 2026-07-25T23:14:00,559 adding 'fibsem/ui/FibsemSpotBurnWidget.py' 2026-07-25T23:14:00,561 adding 'fibsem/ui/FibsemSystemSetupWidget.py' 2026-07-25T23:14:00,562 adding 'fibsem/ui/FibsemUI.py' 2026-07-25T23:14:00,563 adding 'fibsem/ui/__init__.py' 2026-07-25T23:14:00,564 adding 'fibsem/ui/icon.py' 2026-07-25T23:14:00,566 adding 'fibsem/ui/notification_service.py' 2026-07-25T23:14:00,567 adding 'fibsem/ui/stylesheets.py' 2026-07-25T23:14:00,569 adding 'fibsem/ui/utils.py' 2026-07-25T23:14:00,572 adding 'fibsem/ui/fm/widgets/__init__.py' 2026-07-25T23:14:00,573 adding 'fibsem/ui/fm/widgets/acquisition_summary_dialog.py' 2026-07-25T23:14:00,575 adding 'fibsem/ui/fm/widgets/autofocus_widget.py' 2026-07-25T23:14:00,577 adding 'fibsem/ui/fm/widgets/autofocus_widget_demo.py' 2026-07-25T23:14:00,578 adding 'fibsem/ui/fm/widgets/camera_widget.py' 2026-07-25T23:14:00,582 adding 'fibsem/ui/fm/widgets/channel_list_widget.py' 2026-07-25T23:14:00,583 adding 'fibsem/ui/fm/widgets/channel_settings_widget.py' 2026-07-25T23:14:00,585 adding 'fibsem/ui/fm/widgets/display_options_dialog.py' 2026-07-25T23:14:00,587 adding 'fibsem/ui/fm/widgets/fluorescence_plot_widget.py' 2026-07-25T23:14:00,589 adding 'fibsem/ui/fm/widgets/fm_image_viewer_widget.py' 2026-07-25T23:14:00,591 adding 'fibsem/ui/fm/widgets/fm_multi_channel_widget.py' 2026-07-25T23:14:00,592 adding 'fibsem/ui/fm/widgets/histogram_widget.py' 2026-07-25T23:14:00,596 adding 'fibsem/ui/fm/widgets/line_plot_widget.py' 2026-07-25T23:14:00,597 adding 'fibsem/ui/fm/widgets/load_image_dialog.py' 2026-07-25T23:14:00,602 adding 'fibsem/ui/fm/widgets/minimap_plot_widget.py' 2026-07-25T23:14:00,604 adding 'fibsem/ui/fm/widgets/minimap_plot_widget_example.py' 2026-07-25T23:14:00,606 adding 'fibsem/ui/fm/widgets/objective_control_widget.py' 2026-07-25T23:14:00,608 adding 'fibsem/ui/fm/widgets/overview_confirmation_dialog.py' 2026-07-25T23:14:00,610 adding 'fibsem/ui/fm/widgets/overview_parameters_widget.py' 2026-07-25T23:14:00,612 adding 'fibsem/ui/fm/widgets/saved_positions_widget.py' 2026-07-25T23:14:00,614 adding 'fibsem/ui/fm/widgets/sem_acquisition_widget.py' 2026-07-25T23:14:00,615 adding 'fibsem/ui/fm/widgets/stage_position_control_widget.py' 2026-07-25T23:14:00,617 adding 'fibsem/ui/fm/widgets/test_channel_list_widget.py' 2026-07-25T23:14:00,618 adding 'fibsem/ui/fm/widgets/test_line_plot.py' 2026-07-25T23:14:00,620 adding 'fibsem/ui/fm/widgets/z_parameters_widget.py' 2026-07-25T23:14:00,622 adding 'fibsem/ui/icons/check.svg' 2026-07-25T23:14:00,623 adding 'fibsem/ui/icons/chevron_down.svg' 2026-07-25T23:14:00,624 adding 'fibsem/ui/icons/drag_handle.svg' 2026-07-25T23:14:00,625 adding 'fibsem/ui/icons/minus.svg' 2026-07-25T23:14:00,626 adding 'fibsem/ui/icons/plus.svg' 2026-07-25T23:14:00,631 adding 'fibsem/ui/napari/patterns.py' 2026-07-25T23:14:00,633 adding 'fibsem/ui/napari/properties.py' 2026-07-25T23:14:00,635 adding 'fibsem/ui/napari/utilities.py' 2026-07-25T23:14:00,637 adding 'fibsem/ui/qt/__init__.py' 2026-07-25T23:14:00,639 adding 'fibsem/ui/qt/threading.py' 2026-07-25T23:14:00,641 adding 'fibsem/ui/qtdesigner_files/FibsemManipulatorWidget.py' 2026-07-25T23:14:00,642 adding 'fibsem/ui/qtdesigner_files/FibsemUI.py' 2026-07-25T23:14:00,646 adding 'fibsem/ui/widgets/angle_measure.py' 2026-07-25T23:14:00,647 adding 'fibsem/ui/widgets/annotation_pin.py' 2026-07-25T23:14:00,649 adding 'fibsem/ui/widgets/autolamella_apply_protocol_dialog.py' 2026-07-25T23:14:00,651 adding 'fibsem/ui/widgets/autolamella_create_experiment_widget.py' 2026-07-25T23:14:00,654 adding 'fibsem/ui/widgets/autolamella_experiment_task_summary_widget.py' 2026-07-25T23:14:00,657 adding 'fibsem/ui/widgets/autolamella_generate_report_widget.py' 2026-07-25T23:14:00,659 adding 'fibsem/ui/widgets/autolamella_global_task_editor_dialog.py' 2026-07-25T23:14:00,664 adding 'fibsem/ui/widgets/autolamella_lamella_protocol_editor.py' 2026-07-25T23:14:00,668 adding 'fibsem/ui/widgets/autolamella_load_experiment_widget.py' 2026-07-25T23:14:00,670 adding 'fibsem/ui/widgets/autolamella_load_task_protocol_widget.py' 2026-07-25T23:14:00,673 adding 'fibsem/ui/widgets/autolamella_overview_image_widget.py' 2026-07-25T23:14:00,674 adding 'fibsem/ui/widgets/autolamella_protocol_information_widget.py' 2026-07-25T23:14:00,676 adding 'fibsem/ui/widgets/autolamella_spot_burn_coordinates_widget.py' 2026-07-25T23:14:00,679 adding 'fibsem/ui/widgets/autolamella_task_config_editor.py' 2026-07-25T23:14:00,682 adding 'fibsem/ui/widgets/autolamella_task_config_widget.py' 2026-07-25T23:14:00,684 adding 'fibsem/ui/widgets/beam_settings_widget.py' 2026-07-25T23:14:00,686 adding 'fibsem/ui/widgets/beam_widget.py' 2026-07-25T23:14:00,688 adding 'fibsem/ui/widgets/bug_report_widget.py' 2026-07-25T23:14:00,690 adding 'fibsem/ui/widgets/contrast_gamma_control.py' 2026-07-25T23:14:00,695 adding 'fibsem/ui/widgets/custom_widgets.py' 2026-07-25T23:14:00,696 adding 'fibsem/ui/widgets/dataframe_table_widget.py' 2026-07-25T23:14:00,698 adding 'fibsem/ui/widgets/detector_settings_widget.py' 2026-07-25T23:14:00,700 adding 'fibsem/ui/widgets/drag_distance.py' 2026-07-25T23:14:00,702 adding 'fibsem/ui/widgets/dual_beam_widget.py' 2026-07-25T23:14:00,704 adding 'fibsem/ui/widgets/fibsem_image_flow_widget.py' 2026-07-25T23:14:00,715 adding 'fibsem/ui/widgets/fluorescence_coincidence_viewer_widget.py' 2026-07-25T23:14:00,721 adding 'fibsem/ui/widgets/fluorescence_control_widget.py' 2026-07-25T23:14:00,723 adding 'fibsem/ui/widgets/hook_config_widget.py' 2026-07-25T23:14:00,724 adding 'fibsem/ui/widgets/hud_ticker.py' 2026-07-25T23:14:00,727 adding 'fibsem/ui/widgets/image_annotation_widget.py' 2026-07-25T23:14:00,732 adding 'fibsem/ui/widgets/image_canvas.py' 2026-07-25T23:14:00,735 adding 'fibsem/ui/widgets/image_settings_widget.py' 2026-07-25T23:14:00,737 adding 'fibsem/ui/widgets/lamella_card_widget.py' 2026-07-25T23:14:00,739 adding 'fibsem/ui/widgets/lamella_default_config_widget.py' 2026-07-25T23:14:00,741 adding 'fibsem/ui/widgets/lamella_list_widget.py' 2026-07-25T23:14:00,743 adding 'fibsem/ui/widgets/lamella_pose_list_widget.py' 2026-07-25T23:14:00,745 adding 'fibsem/ui/widgets/lamella_task_image_widget.py' 2026-07-25T23:14:00,747 adding 'fibsem/ui/widgets/lamella_workflow_widget.py' 2026-07-25T23:14:00,750 adding 'fibsem/ui/widgets/microscope_config_widget.py' 2026-07-25T23:14:00,752 adding 'fibsem/ui/widgets/milling_alignment_widget.py' 2026-07-25T23:14:00,753 adding 'fibsem/ui/widgets/milling_settings_widget.py' 2026-07-25T23:14:00,757 adding 'fibsem/ui/widgets/milling_stage_list_widget.py' 2026-07-25T23:14:00,758 adding 'fibsem/ui/widgets/milling_stages_widget.py' 2026-07-25T23:14:00,760 adding 'fibsem/ui/widgets/milling_task_acquisition_settings_widget.py' 2026-07-25T23:14:00,762 adding 'fibsem/ui/widgets/milling_task_config_widget2.py' 2026-07-25T23:14:00,764 adding 'fibsem/ui/widgets/milling_task_viewer_widget.py' 2026-07-25T23:14:00,766 adding 'fibsem/ui/widgets/milling_widget.py' 2026-07-25T23:14:00,769 adding 'fibsem/ui/widgets/notifications.py' 2026-07-25T23:14:00,771 adding 'fibsem/ui/widgets/overview_acquisition_settings_widget.py' 2026-07-25T23:14:00,773 adding 'fibsem/ui/widgets/pattern_settings_widget.py' 2026-07-25T23:14:00,774 adding 'fibsem/ui/widgets/preferences_dialog.py' 2026-07-25T23:14:00,776 adding 'fibsem/ui/widgets/profile_line.py' 2026-07-25T23:14:00,778 adding 'fibsem/ui/widgets/progress_widget.py' 2026-07-25T23:14:00,780 adding 'fibsem/ui/widgets/radial_menu.py' 2026-07-25T23:14:00,782 adding 'fibsem/ui/widgets/reference_image_parameters_widget.py' 2026-07-25T23:14:00,784 adding 'fibsem/ui/widgets/sample_holder_widget.py' 2026-07-25T23:14:00,786 adding 'fibsem/ui/widgets/saved_position_widget.py' 2026-07-25T23:14:00,788 adding 'fibsem/ui/widgets/selected_lamella_widget.py' 2026-07-25T23:14:00,790 adding 'fibsem/ui/widgets/strategy_settings_widget.py' 2026-07-25T23:14:00,791 adding 'fibsem/ui/widgets/task_history_table_widget.py' 2026-07-25T23:14:00,793 adding 'fibsem/ui/widgets/task_summary_formatting.py' 2026-07-25T23:14:00,795 adding 'fibsem/ui/widgets/tiled_overview_widget.py' 2026-07-25T23:14:00,797 adding 'fibsem/ui/widgets/workflow_config_widget.py' 2026-07-25T23:14:00,799 adding 'fibsem/ui/widgets/workflow_info_widget.py' 2026-07-25T23:14:00,801 adding 'fibsem/ui/widgets/workflow_summary_dialog.py' 2026-07-25T23:14:00,803 adding 'fibsem/ui/widgets/workflow_task_editor_widget.py' 2026-07-25T23:14:00,806 adding 'fibsem/ui/widgets/workflow_timeline_widget.py' 2026-07-25T23:14:00,808 adding 'fibsem/ui/widgets/zoom_loupe.py' 2026-07-25T23:14:00,810 adding 'fibsem/ui/widgets/tests/test-icon-tool-button.py' 2026-07-25T23:14:00,812 adding 'fibsem/ui/widgets/tests/test-image-settings-widget.py' 2026-07-25T23:14:00,813 adding 'fibsem/ui/widgets/tests/test-lamella-card.py' 2026-07-25T23:14:00,815 adding 'fibsem/ui/widgets/tests/test-lamella-list.py' 2026-07-25T23:14:00,817 adding 'fibsem/ui/widgets/tests/test-lamella-workflow.py' 2026-07-25T23:14:00,818 adding 'fibsem/ui/widgets/tests/test-progress-bar.py' 2026-07-25T23:14:00,820 adding 'fibsem/ui/widgets/tests/test-selected-lamella.py' 2026-07-25T23:14:00,821 adding 'fibsem/ui/widgets/tests/test-spinner-icon.py' 2026-07-25T23:14:00,823 adding 'fibsem/ui/widgets/tests/test-workflow-config.py' 2026-07-25T23:14:00,824 adding 'fibsem/ui/widgets/tests/test_alignment_comparison.py' 2026-07-25T23:14:00,826 adding 'fibsem/ui/widgets/tests/test_alignment_plot_v2.py' 2026-07-25T23:14:00,827 adding 'fibsem/ui/widgets/tests/test_countdown_progress.py' 2026-07-25T23:14:00,828 adding 'fibsem/ui/widgets/tests/test_drag_distance.py' 2026-07-25T23:14:00,830 adding 'fibsem/ui/widgets/tests/test_hooks_manual.py' 2026-07-25T23:14:00,832 adding 'fibsem/ui/widgets/tests/test_image_canvas.py' 2026-07-25T23:14:00,833 adding 'fibsem/ui/widgets/tests/test_lamella_default_config_widget.py' 2026-07-25T23:14:00,834 adding 'fibsem/ui/widgets/tests/test_lamella_name_list_widget.py' 2026-07-25T23:14:00,835 adding 'fibsem/ui/widgets/tests/test_lamella_task_image_widget.py' 2026-07-25T23:14:00,837 adding 'fibsem/ui/widgets/tests/test_milling_settings_widget.py' 2026-07-25T23:14:00,838 adding 'fibsem/ui/widgets/tests/test_milling_stage_list.py' 2026-07-25T23:14:00,840 adding 'fibsem/ui/widgets/tests/test_milling_stages_widget.py' 2026-07-25T23:14:00,841 adding 'fibsem/ui/widgets/tests/test_milling_task_config_widget2.py' 2026-07-25T23:14:00,843 adding 'fibsem/ui/widgets/tests/test_milling_task_viewer_widget.py' 2026-07-25T23:14:00,844 adding 'fibsem/ui/widgets/tests/test_pattern_settings_widget.py' 2026-07-25T23:14:00,846 adding 'fibsem/ui/widgets/tests/test_progress_widget.py' 2026-07-25T23:14:00,848 adding 'fibsem/ui/widgets/tests/test_qt_threading.py' 2026-07-25T23:14:00,849 adding 'fibsem/ui/widgets/tests/test_radial_menu.py' 2026-07-25T23:14:00,851 adding 'fibsem/ui/widgets/tests/test_radial_ruler_demo.py' 2026-07-25T23:14:00,853 adding 'fibsem/ui/widgets/tests/test_reference_image_parameters_widget.py' 2026-07-25T23:14:00,854 adding 'fibsem/ui/widgets/tests/test_saved_position_widget.py' 2026-07-25T23:14:00,856 adding 'fibsem/ui/widgets/tests/test_splitter_layouts.py' 2026-07-25T23:14:00,857 adding 'fibsem/ui/widgets/tests/test_toast.py' 2026-07-25T23:14:00,859 adding 'fibsem/ui/widgets/tests/test_workflow_task_editor_widget.py' 2026-07-25T23:14:00,861 adding 'fibsem/ui/widgets/tests/test_workflow_timeline_animation.py' 2026-07-25T23:14:00,862 adding 'fibsem/util/__init__.py' 2026-07-25T23:14:00,865 adding 'fibsem/util/draw_numbers.py' 2026-07-25T23:14:00,866 adding 'fibsem/util/filename.py' 2026-07-25T23:14:00,869 adding 'fibsem-0.5.1.dist-info/licenses/LICENSE' 2026-07-25T23:14:00,870 adding 'fibsem-0.5.1.dist-info/METADATA' 2026-07-25T23:14:00,872 adding 'fibsem-0.5.1.dist-info/WHEEL' 2026-07-25T23:14:00,873 adding 'fibsem-0.5.1.dist-info/entry_points.txt' 2026-07-25T23:14:00,874 adding 'fibsem-0.5.1.dist-info/top_level.txt' 2026-07-25T23:14:00,881 adding 'fibsem-0.5.1.dist-info/RECORD' 2026-07-25T23:14:01,000 removing build/bdist.linux-armv7l/wheel 2026-07-25T23:14:01,220 Building wheel for fibsem (pyproject.toml): finished with status 'done' 2026-07-25T23:14:01,452 Created wheel for fibsem: filename=fibsem-0.5.1-py3-none-any.whl size=10617831 sha256=8a896232fa39421674b3abae03eac1308bd2369ea59d1d279bfadc441b4e9cb0 2026-07-25T23:14:01,453 Stored in directory: /tmp/pip-ephem-wheel-cache-y325ghiz/wheels/34/02/30/8285e22b0b9fe0a6cad179aae63ff3758ccb6329f8d019c64d 2026-07-25T23:14:01,480 Successfully built fibsem 2026-07-25T23:14:01,737 Removed build tracker: '/tmp/pip-build-tracker-ecp6p45j'