2026-07-26T01:56:57,718 Created temporary directory: /tmp/pip-ephem-wheel-cache-siti3ybe 2026-07-26T01:56:57,719 Created temporary directory: /tmp/pip-build-tracker-_5l4s225 2026-07-26T01:56:57,720 Initialized build tracking at /tmp/pip-build-tracker-_5l4s225 2026-07-26T01:56:57,720 Created build tracker: /tmp/pip-build-tracker-_5l4s225 2026-07-26T01:56:57,721 Entered build tracker: /tmp/pip-build-tracker-_5l4s225 2026-07-26T01:56:57,721 Created temporary directory: /tmp/pip-wheel-amx58x2i 2026-07-26T01:56:57,724 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-07-26T01:56:58,391 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-07-26T01:56:58,392 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-07-26T01:56:58,419 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-07-26T01:56:58,437 Collecting omicverse==2.2.4 2026-07-26T01:56:58,440 Created temporary directory: /tmp/pip-unpack-5wtwybgs 2026-07-26T01:56:58,674 Downloading omicverse-2.2.4.tar.gz (14.3 MB) 2026-07-26T01:57:07,261 Added omicverse==2.2.4 from https://files.pythonhosted.org/packages/4a/b6/b4832eb854cfafc0862537550f4b51ce03747a3541a46258269fe0af43f2/omicverse-2.2.4.tar.gz to build tracker '/tmp/pip-build-tracker-_5l4s225' 2026-07-26T01:57:07,272 Created temporary directory: /tmp/pip-build-env-v68v_ykb 2026-07-26T01:57:07,276 Installing build dependencies: started 2026-07-26T01:57:07,277 Running command pip subprocess to install build dependencies 2026-07-26T01:57:08,406 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-07-26T01:57:08,847 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-26T01:57:08,870 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-26T01:57:10,669 Collecting setuptools>=61 2026-07-26T01:57:10,670 Obtaining dependency information for setuptools>=61 from https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata 2026-07-26T01:57:10,684 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-07-26T01:57:10,917 Collecting wheel 2026-07-26T01:57:10,918 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-07-26T01:57:10,933 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-07-26T01:57:13,068 Collecting Cython 2026-07-26T01:57:13,113 Using cached cython-3.2.9-cp39-abi3-manylinux2014_armv7l.manylinux_2_17_armv7l.manylinux_2_31_armv7l.whl (2.9 MB) 2026-07-26T01:57:13,383 Collecting packaging>=24.0 2026-07-26T01:57:13,384 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-07-26T01:57:13,397 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-07-26T01:57:13,656 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-07-26T01:57:13,674 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-26T01:57:13,759 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-26T01:57:13,798 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-07-26T01:57:13,821 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-26T01:57:13,920 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-26T01:57:16,663 Installing collected packages: setuptools, packaging, Cython, wheel 2026-07-26T01:57:23,582 Creating /tmp/pip-build-env-v68v_ykb/overlay/local/bin 2026-07-26T01:57:23,584 changing mode of /tmp/pip-build-env-v68v_ykb/overlay/local/bin/cygdb to 755 2026-07-26T01:57:23,586 changing mode of /tmp/pip-build-env-v68v_ykb/overlay/local/bin/cython to 755 2026-07-26T01:57:23,588 changing mode of /tmp/pip-build-env-v68v_ykb/overlay/local/bin/cythonize to 755 2026-07-26T01:57:23,728 changing mode of /tmp/pip-build-env-v68v_ykb/overlay/local/bin/wheel to 755 2026-07-26T01:57:23,758 Successfully installed Cython-3.2.9 packaging-26.2 setuptools-83.0.0 wheel-0.47.0 2026-07-26T01:57:24,142 Installing build dependencies: finished with status 'done' 2026-07-26T01:57:24,148 Getting requirements to build wheel: started 2026-07-26T01:57:24,150 Running command Getting requirements to build wheel 2026-07-26T01:57:24,913 /tmp/pip-build-env-v68v_ykb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-26T01:57:24,913 !! 2026-07-26T01:57:24,915 ******************************************************************************** 2026-07-26T01:57:24,916 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-26T01:57:24,917 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-26T01:57:24,917 or your builds will no longer be supported. 2026-07-26T01:57:24,918 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-26T01:57:24,919 ******************************************************************************** 2026-07-26T01:57:24,920 !! 2026-07-26T01:57:24,921 corresp(dist, value, root_dir) 2026-07-26T01:57:25,232 running egg_info 2026-07-26T01:57:25,239 writing omicverse.egg-info/PKG-INFO 2026-07-26T01:57:25,282 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-07-26T01:57:25,284 writing entry points to omicverse.egg-info/entry_points.txt 2026-07-26T01:57:25,320 writing requirements to omicverse.egg-info/requires.txt 2026-07-26T01:57:25,322 writing top-level names to omicverse.egg-info/top_level.txt 2026-07-26T01:57:25,645 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-07-26T01:57:25,734 reading manifest template 'MANIFEST.in' 2026-07-26T01:57:26,995 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-07-26T01:57:28,916 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-07-26T01:57:29,548 warning: no files found matching '*.yml' under directory 'omicverse' 2026-07-26T01:57:36,130 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-07-26T01:57:37,047 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-07-26T01:57:37,665 warning: no files found matching '*.svg' under directory 'omicverse' 2026-07-26T01:57:38,313 warning: no files found matching '*.ico' under directory 'omicverse' 2026-07-26T01:57:38,930 warning: no files found matching '*.db' under directory 'omicverse' 2026-07-26T01:57:39,567 warning: no files found matching '*.npz' under directory 'omicverse' 2026-07-26T01:57:40,423 warning: no files found matching '*.gz' under directory 'omicverse' 2026-07-26T01:57:41,896 no previously-included directories found matching '.git' 2026-07-26T01:57:41,904 no previously-included directories found matching '.github' 2026-07-26T01:57:41,911 no previously-included directories found matching '.claude' 2026-07-26T01:57:41,919 no previously-included directories found matching '.pytest_cache' 2026-07-26T01:57:41,926 no previously-included directories found matching '.ruff_cache' 2026-07-26T01:57:41,933 no previously-included directories found matching '.vscode' 2026-07-26T01:57:41,941 no previously-included directories found matching 'docs' 2026-07-26T01:57:41,948 no previously-included directories found matching 'tests' 2026-07-26T01:57:41,956 no previously-included directories found matching 'OvIntelligence' 2026-07-26T01:57:41,963 no previously-included directories found matching 'READMEM' 2026-07-26T01:57:41,971 no previously-included directories found matching 'omicverse_guide' 2026-07-26T01:57:41,979 no previously-included directories found matching 'omicverse_web' 2026-07-26T01:57:41,987 no previously-included directories found matching 'tmp' 2026-07-26T01:57:41,994 no previously-included directories found matching 'tmp_omicverse' 2026-07-26T01:57:42,002 no previously-included directories found matching 'Skill_Seekers' 2026-07-26T01:57:42,014 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-07-26T01:57:42,029 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-07-26T01:57:42,041 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-07-26T01:57:42,041 adding license file 'LICENSE' 2026-07-26T01:57:42,148 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-07-26T01:57:42,267 Getting requirements to build wheel: finished with status 'done' 2026-07-26T01:57:42,271 Created temporary directory: /tmp/pip-modern-metadata-kovchds5 2026-07-26T01:57:42,274 Preparing metadata (pyproject.toml): started 2026-07-26T01:57:42,275 Running command Preparing metadata (pyproject.toml) 2026-07-26T01:57:42,948 /tmp/pip-build-env-v68v_ykb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-26T01:57:42,948 !! 2026-07-26T01:57:42,949 ******************************************************************************** 2026-07-26T01:57:42,950 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-26T01:57:42,951 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-26T01:57:42,952 or your builds will no longer be supported. 2026-07-26T01:57:42,953 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-26T01:57:42,953 ******************************************************************************** 2026-07-26T01:57:42,955 !! 2026-07-26T01:57:42,955 corresp(dist, value, root_dir) 2026-07-26T01:57:43,267 running dist_info 2026-07-26T01:57:43,279 creating /tmp/pip-modern-metadata-kovchds5/omicverse.egg-info 2026-07-26T01:57:43,279 writing /tmp/pip-modern-metadata-kovchds5/omicverse.egg-info/PKG-INFO 2026-07-26T01:57:43,323 writing dependency_links to /tmp/pip-modern-metadata-kovchds5/omicverse.egg-info/dependency_links.txt 2026-07-26T01:57:43,325 writing entry points to /tmp/pip-modern-metadata-kovchds5/omicverse.egg-info/entry_points.txt 2026-07-26T01:57:43,361 writing requirements to /tmp/pip-modern-metadata-kovchds5/omicverse.egg-info/requires.txt 2026-07-26T01:57:43,362 writing top-level names to /tmp/pip-modern-metadata-kovchds5/omicverse.egg-info/top_level.txt 2026-07-26T01:57:43,364 writing manifest file '/tmp/pip-modern-metadata-kovchds5/omicverse.egg-info/SOURCES.txt' 2026-07-26T01:57:43,876 reading manifest file '/tmp/pip-modern-metadata-kovchds5/omicverse.egg-info/SOURCES.txt' 2026-07-26T01:57:43,878 reading manifest template 'MANIFEST.in' 2026-07-26T01:57:45,214 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-07-26T01:57:47,049 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-07-26T01:57:47,666 warning: no files found matching '*.yml' under directory 'omicverse' 2026-07-26T01:57:53,738 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-07-26T01:57:54,728 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-07-26T01:57:55,338 warning: no files found matching '*.svg' under directory 'omicverse' 2026-07-26T01:57:55,963 warning: no files found matching '*.ico' under directory 'omicverse' 2026-07-26T01:57:56,572 warning: no files found matching '*.db' under directory 'omicverse' 2026-07-26T01:57:57,204 warning: no files found matching '*.npz' under directory 'omicverse' 2026-07-26T01:57:57,812 warning: no files found matching '*.gz' under directory 'omicverse' 2026-07-26T01:57:59,052 no previously-included directories found matching '.git' 2026-07-26T01:57:59,057 no previously-included directories found matching '.github' 2026-07-26T01:57:59,062 no previously-included directories found matching '.claude' 2026-07-26T01:57:59,068 no previously-included directories found matching '.pytest_cache' 2026-07-26T01:57:59,073 no previously-included directories found matching '.ruff_cache' 2026-07-26T01:57:59,079 no previously-included directories found matching '.vscode' 2026-07-26T01:57:59,085 no previously-included directories found matching 'docs' 2026-07-26T01:57:59,090 no previously-included directories found matching 'tests' 2026-07-26T01:57:59,095 no previously-included directories found matching 'OvIntelligence' 2026-07-26T01:57:59,101 no previously-included directories found matching 'READMEM' 2026-07-26T01:57:59,106 no previously-included directories found matching 'omicverse_guide' 2026-07-26T01:57:59,112 no previously-included directories found matching 'omicverse_web' 2026-07-26T01:57:59,118 no previously-included directories found matching 'tmp' 2026-07-26T01:57:59,123 no previously-included directories found matching 'tmp_omicverse' 2026-07-26T01:57:59,128 no previously-included directories found matching 'Skill_Seekers' 2026-07-26T01:57:59,137 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-07-26T01:57:59,147 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-07-26T01:57:59,155 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-07-26T01:57:59,156 adding license file 'LICENSE' 2026-07-26T01:57:59,239 writing manifest file '/tmp/pip-modern-metadata-kovchds5/omicverse.egg-info/SOURCES.txt' 2026-07-26T01:57:59,242 creating '/tmp/pip-modern-metadata-kovchds5/omicverse-2.2.4.dist-info' 2026-07-26T01:57:59,393 Preparing metadata (pyproject.toml): finished with status 'done' 2026-07-26T01:57:59,410 Source in /tmp/pip-wheel-amx58x2i/omicverse_9726099892de46f6b61fc5a7fb39d1a5 has version 2.2.4, which satisfies requirement omicverse==2.2.4 from https://files.pythonhosted.org/packages/4a/b6/b4832eb854cfafc0862537550f4b51ce03747a3541a46258269fe0af43f2/omicverse-2.2.4.tar.gz 2026-07-26T01:57:59,412 Removed omicverse==2.2.4 from https://files.pythonhosted.org/packages/4a/b6/b4832eb854cfafc0862537550f4b51ce03747a3541a46258269fe0af43f2/omicverse-2.2.4.tar.gz from build tracker '/tmp/pip-build-tracker-_5l4s225' 2026-07-26T01:57:59,439 Created temporary directory: /tmp/pip-unpack-tq4_ltnp 2026-07-26T01:57:59,440 Building wheels for collected packages: omicverse 2026-07-26T01:57:59,445 Created temporary directory: /tmp/pip-wheel-usulvrs6 2026-07-26T01:57:59,446 Destination directory: /tmp/pip-wheel-usulvrs6 2026-07-26T01:57:59,448 Building wheel for omicverse (pyproject.toml): started 2026-07-26T01:57:59,449 Running command Building wheel for omicverse (pyproject.toml) 2026-07-26T01:58:00,101 /tmp/pip-build-env-v68v_ykb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-26T01:58:00,101 !! 2026-07-26T01:58:00,102 ******************************************************************************** 2026-07-26T01:58:00,103 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-26T01:58:00,104 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-26T01:58:00,105 or your builds will no longer be supported. 2026-07-26T01:58:00,106 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-26T01:58:00,106 ******************************************************************************** 2026-07-26T01:58:00,108 !! 2026-07-26T01:58:00,108 corresp(dist, value, root_dir) 2026-07-26T01:58:00,401 running bdist_wheel 2026-07-26T01:58:00,421 running build 2026-07-26T01:58:00,421 running build_py 2026-07-26T01:58:00,428 creating build/lib/omicverse 2026-07-26T01:58:00,430 copying omicverse/claw.py -> build/lib/omicverse 2026-07-26T01:58:00,433 copying omicverse/_settings.py -> build/lib/omicverse 2026-07-26T01:58:00,436 copying omicverse/_optional.py -> build/lib/omicverse 2026-07-26T01:58:00,438 copying omicverse/_registry.py -> build/lib/omicverse 2026-07-26T01:58:00,441 copying omicverse/__init__.py -> build/lib/omicverse 2026-07-26T01:58:00,444 copying omicverse/cli.py -> build/lib/omicverse 2026-07-26T01:58:00,446 copying omicverse/_oom_compat.py -> build/lib/omicverse 2026-07-26T01:58:00,447 copying omicverse/_monitor.py -> build/lib/omicverse 2026-07-26T01:58:00,450 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-07-26T01:58:00,453 creating build/lib/omicverse/space 2026-07-26T01:58:00,454 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-07-26T01:58:00,457 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-07-26T01:58:00,460 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-07-26T01:58:00,462 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-07-26T01:58:00,465 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-07-26T01:58:00,468 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-07-26T01:58:00,470 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-07-26T01:58:00,473 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-07-26T01:58:00,475 copying omicverse/space/_tissue_zones.py -> build/lib/omicverse/space 2026-07-26T01:58:00,477 copying omicverse/space/_cellcharter.py -> build/lib/omicverse/space 2026-07-26T01:58:00,479 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-07-26T01:58:00,481 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-07-26T01:58:00,483 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-07-26T01:58:00,486 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-07-26T01:58:00,489 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-07-26T01:58:00,491 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-07-26T01:58:00,494 copying omicverse/space/_split.py -> build/lib/omicverse/space 2026-07-26T01:58:00,497 creating build/lib/omicverse/pp 2026-07-26T01:58:00,498 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,501 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,503 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,505 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,508 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,510 copying omicverse/pp/_tsne_cpu.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,512 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,514 copying omicverse/pp/_scdblfinder.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,516 copying omicverse/pp/_leiden_gpu.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,519 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,521 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,523 copying omicverse/pp/_gpu_cache.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,525 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,527 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,530 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,533 copying omicverse/pp/_champ.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,535 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,538 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,540 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,542 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,546 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,548 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,551 copying omicverse/pp/_doubletfinder.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,553 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,556 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,557 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,560 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-07-26T01:58:00,565 creating build/lib/omicverse/alignment 2026-07-26T01:58:00,566 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,568 copying omicverse/alignment/simpleaf.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,571 copying omicverse/alignment/amplicon_16s.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,573 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,575 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,578 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,580 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,582 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,585 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,587 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,589 copying omicverse/alignment/dada2.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,592 copying omicverse/alignment/mafft.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,594 copying omicverse/alignment/vsearch.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,596 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,598 copying omicverse/alignment/cutadapt.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,601 copying omicverse/alignment/_db.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,603 copying omicverse/alignment/fasttree.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,604 copying omicverse/alignment/phylogeny.py -> build/lib/omicverse/alignment 2026-07-26T01:58:00,607 creating build/lib/omicverse/airr 2026-07-26T01:58:00,608 copying omicverse/airr/_tcr.py -> build/lib/omicverse/airr 2026-07-26T01:58:00,611 copying omicverse/airr/_bulk.py -> build/lib/omicverse/airr 2026-07-26T01:58:00,614 copying omicverse/airr/__init__.py -> build/lib/omicverse/airr 2026-07-26T01:58:00,616 copying omicverse/airr/io.py -> build/lib/omicverse/airr 2026-07-26T01:58:00,619 copying omicverse/airr/_clonotype.py -> build/lib/omicverse/airr 2026-07-26T01:58:00,621 copying omicverse/airr/_metrics.py -> build/lib/omicverse/airr 2026-07-26T01:58:00,624 copying omicverse/airr/_bcr.py -> build/lib/omicverse/airr 2026-07-26T01:58:00,627 copying omicverse/airr/plotting.py -> build/lib/omicverse/airr 2026-07-26T01:58:00,629 copying omicverse/airr/_tcr_gex.py -> build/lib/omicverse/airr 2026-07-26T01:58:00,632 copying omicverse/airr/_qc.py -> build/lib/omicverse/airr 2026-07-26T01:58:00,635 creating build/lib/omicverse/micro 2026-07-26T01:58:00,636 copying omicverse/micro/_da.py -> build/lib/omicverse/micro 2026-07-26T01:58:00,638 copying omicverse/micro/_utils.py -> build/lib/omicverse/micro 2026-07-26T01:58:00,640 copying omicverse/micro/__init__.py -> build/lib/omicverse/micro 2026-07-26T01:58:00,642 copying omicverse/micro/_phylo.py -> build/lib/omicverse/micro 2026-07-26T01:58:00,643 copying omicverse/micro/_ord.py -> build/lib/omicverse/micro 2026-07-26T01:58:00,646 copying omicverse/micro/_pp.py -> build/lib/omicverse/micro 2026-07-26T01:58:00,648 copying omicverse/micro/_pair.py -> build/lib/omicverse/micro 2026-07-26T01:58:00,651 copying omicverse/micro/_diversity.py -> build/lib/omicverse/micro 2026-07-26T01:58:00,653 copying omicverse/micro/_meta.py -> build/lib/omicverse/micro 2026-07-26T01:58:00,657 creating build/lib/omicverse/genetics 2026-07-26T01:58:00,658 copying omicverse/genetics/_mr.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,660 copying omicverse/genetics/_simulate.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,663 copying omicverse/genetics/_utils.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,666 copying omicverse/genetics/__init__.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,668 copying omicverse/genetics/io.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,670 copying omicverse/genetics/_eqtl.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,673 copying omicverse/genetics/_scdrs.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,675 copying omicverse/genetics/_finemap.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,677 copying omicverse/genetics/_coloc.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,679 copying omicverse/genetics/_gsmap.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,682 copying omicverse/genetics/_gwas.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,684 copying omicverse/genetics/_ldsc.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,687 copying omicverse/genetics/_twas.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,689 copying omicverse/genetics/plotting.py -> build/lib/omicverse/genetics 2026-07-26T01:58:00,692 creating build/lib/omicverse/ov_skill_seeker 2026-07-26T01:58:00,693 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-07-26T01:58:00,695 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-07-26T01:58:00,698 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-07-26T01:58:00,699 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-07-26T01:58:00,701 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-07-26T01:58:00,703 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-07-26T01:58:00,706 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-07-26T01:58:00,708 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-07-26T01:58:00,709 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-07-26T01:58:00,712 creating build/lib/omicverse/external 2026-07-26T01:58:00,713 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-07-26T01:58:00,715 copying omicverse/external/torch_tsne.py -> build/lib/omicverse/external 2026-07-26T01:58:00,718 creating build/lib/omicverse/llm 2026-07-26T01:58:00,719 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,723 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,726 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,728 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,730 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,734 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,738 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,740 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,742 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,745 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,748 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,750 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-07-26T01:58:00,756 creating build/lib/omicverse/utils 2026-07-26T01:58:00,757 copying omicverse/utils/_metabolights.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,759 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,762 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,764 copying omicverse/utils/_ovagent_paths.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,766 copying omicverse/utils/_versions.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,768 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,770 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,771 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,774 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,777 copying omicverse/utils/agent_backend_streaming.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,779 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,782 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,784 copying omicverse/utils/registry.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,786 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,788 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,791 copying omicverse/utils/agent_backend_anthropic.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,793 copying omicverse/utils/agent_backend_dashscope.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,795 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,797 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,800 copying omicverse/utils/agent_backend_gemini.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,802 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,805 copying omicverse/utils/_seed.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,807 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,809 copying omicverse/utils/_memory.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,811 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,814 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,815 copying omicverse/utils/agent_backend_openai.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,818 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,820 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,823 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,825 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,828 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,831 copying omicverse/utils/agent_backend_common.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,833 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,835 copying omicverse/utils/_compat.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,838 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,841 copying omicverse/utils/_sample_metadata_alignment.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,843 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,846 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,849 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,851 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,854 copying omicverse/utils/_ovagent_lookup.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,857 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,859 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,861 copying omicverse/utils/_gene_id_conversion.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,864 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,867 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,868 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,870 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,872 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-07-26T01:58:00,875 creating build/lib/omicverse/jarvis 2026-07-26T01:58:00,876 copying omicverse/jarvis/channel_media.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,878 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,880 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,882 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,884 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,902 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,905 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,908 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,910 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,913 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,916 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,918 copying omicverse/jarvis/gemini_cli_oauth.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,921 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,923 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-07-26T01:58:00,925 creating build/lib/omicverse/report 2026-07-26T01:58:00,926 copying omicverse/report/_provenance.py -> build/lib/omicverse/report 2026-07-26T01:58:00,928 copying omicverse/report/__init__.py -> build/lib/omicverse/report 2026-07-26T01:58:00,930 copying omicverse/report/_plots.py -> build/lib/omicverse/report 2026-07-26T01:58:00,932 copying omicverse/report/_html.py -> build/lib/omicverse/report 2026-07-26T01:58:00,934 copying omicverse/report/_scanner.py -> build/lib/omicverse/report 2026-07-26T01:58:00,937 creating build/lib/omicverse/es 2026-07-26T01:58:00,938 copying omicverse/es/_viper.py -> build/lib/omicverse/es 2026-07-26T01:58:00,941 copying omicverse/es/_query_set.py -> build/lib/omicverse/es 2026-07-26T01:58:00,943 copying omicverse/es/__init__.py -> build/lib/omicverse/es 2026-07-26T01:58:00,945 copying omicverse/es/_ucell.py -> build/lib/omicverse/es 2026-07-26T01:58:00,948 copying omicverse/es/_mdt.py -> build/lib/omicverse/es 2026-07-26T01:58:00,950 copying omicverse/es/_ulm.py -> build/lib/omicverse/es 2026-07-26T01:58:00,952 copying omicverse/es/_net.py -> build/lib/omicverse/es 2026-07-26T01:58:00,955 copying omicverse/es/_run.py -> build/lib/omicverse/es 2026-07-26T01:58:00,957 copying omicverse/es/_pv.py -> build/lib/omicverse/es 2026-07-26T01:58:00,959 copying omicverse/es/_ora.py -> build/lib/omicverse/es 2026-07-26T01:58:00,961 copying omicverse/es/_datatype.py -> build/lib/omicverse/es 2026-07-26T01:58:00,963 copying omicverse/es/_data.py -> build/lib/omicverse/es 2026-07-26T01:58:00,965 copying omicverse/es/_aucell.py -> build/lib/omicverse/es 2026-07-26T01:58:00,967 copying omicverse/es/_odeps.py -> build/lib/omicverse/es 2026-07-26T01:58:00,969 copying omicverse/es/_mlm.py -> build/lib/omicverse/es 2026-07-26T01:58:00,971 copying omicverse/es/_methods.py -> build/lib/omicverse/es 2026-07-26T01:58:00,973 copying omicverse/es/_engine.py -> build/lib/omicverse/es 2026-07-26T01:58:00,976 copying omicverse/es/_decouple.py -> build/lib/omicverse/es 2026-07-26T01:58:00,977 copying omicverse/es/_consensus.py -> build/lib/omicverse/es 2026-07-26T01:58:00,979 copying omicverse/es/_zscore.py -> build/lib/omicverse/es 2026-07-26T01:58:00,982 copying omicverse/es/_gsea.py -> build/lib/omicverse/es 2026-07-26T01:58:00,984 copying omicverse/es/_method.py -> build/lib/omicverse/es 2026-07-26T01:58:00,986 copying omicverse/es/_gsva.py -> build/lib/omicverse/es 2026-07-26T01:58:00,989 copying omicverse/es/_udt.py -> build/lib/omicverse/es 2026-07-26T01:58:00,991 copying omicverse/es/_waggr.py -> build/lib/omicverse/es 2026-07-26T01:58:00,994 creating build/lib/omicverse/protein 2026-07-26T01:58:00,995 copying omicverse/protein/_simulate.py -> build/lib/omicverse/protein 2026-07-26T01:58:00,997 copying omicverse/protein/_impute.py -> build/lib/omicverse/protein 2026-07-26T01:58:00,999 copying omicverse/protein/__init__.py -> build/lib/omicverse/protein 2026-07-26T01:58:01,002 copying omicverse/protein/io.py -> build/lib/omicverse/protein 2026-07-26T01:58:01,004 copying omicverse/protein/_de.py -> build/lib/omicverse/protein 2026-07-26T01:58:01,006 copying omicverse/protein/_summarize.py -> build/lib/omicverse/protein 2026-07-26T01:58:01,009 copying omicverse/protein/_enrich.py -> build/lib/omicverse/protein 2026-07-26T01:58:01,011 copying omicverse/protein/_design.py -> build/lib/omicverse/protein 2026-07-26T01:58:01,013 copying omicverse/protein/_norm.py -> build/lib/omicverse/protein 2026-07-26T01:58:01,015 copying omicverse/protein/plotting.py -> build/lib/omicverse/protein 2026-07-26T01:58:01,018 copying omicverse/protein/_qc.py -> build/lib/omicverse/protein 2026-07-26T01:58:01,020 creating build/lib/omicverse/datasets 2026-07-26T01:58:01,021 copying omicverse/datasets/_ev.py -> build/lib/omicverse/datasets 2026-07-26T01:58:01,024 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-07-26T01:58:01,025 copying omicverse/datasets/_airr.py -> build/lib/omicverse/datasets 2026-07-26T01:58:01,028 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-07-26T01:58:01,031 copying omicverse/datasets/_protein.py -> build/lib/omicverse/datasets 2026-07-26T01:58:01,033 copying omicverse/datasets/_ambient.py -> build/lib/omicverse/datasets 2026-07-26T01:58:01,035 copying omicverse/datasets/_crossspecies.py -> build/lib/omicverse/datasets 2026-07-26T01:58:01,037 copying omicverse/datasets/_metabolism.py -> build/lib/omicverse/datasets 2026-07-26T01:58:01,039 copying omicverse/datasets/_genetics.py -> build/lib/omicverse/datasets 2026-07-26T01:58:01,041 copying omicverse/datasets/_timecourse.py -> build/lib/omicverse/datasets 2026-07-26T01:58:01,043 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-07-26T01:58:01,046 creating build/lib/omicverse/single 2026-07-26T01:58:01,047 copying omicverse/single/_autoresolution.py -> build/lib/omicverse/single 2026-07-26T01:58:01,050 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-07-26T01:58:01,053 copying omicverse/single/_liana.py -> build/lib/omicverse/single 2026-07-26T01:58:01,055 copying omicverse/single/_pseudobulk.py -> build/lib/omicverse/single 2026-07-26T01:58:01,058 copying omicverse/single/_stavia.py -> build/lib/omicverse/single 2026-07-26T01:58:01,060 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-07-26T01:58:01,062 copying omicverse/single/_monocle.py -> build/lib/omicverse/single 2026-07-26T01:58:01,065 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-07-26T01:58:01,067 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-07-26T01:58:01,070 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-07-26T01:58:01,072 copying omicverse/single/_rpca.py -> build/lib/omicverse/single 2026-07-26T01:58:01,075 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-07-26T01:58:01,078 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-07-26T01:58:01,080 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-07-26T01:58:01,082 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-07-26T01:58:01,084 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-07-26T01:58:01,087 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-07-26T01:58:01,091 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-07-26T01:58:01,094 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-07-26T01:58:01,097 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-07-26T01:58:01,099 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-07-26T01:58:01,102 copying omicverse/single/_comm.py -> build/lib/omicverse/single 2026-07-26T01:58:01,104 copying omicverse/single/_perturb.py -> build/lib/omicverse/single 2026-07-26T01:58:01,107 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-07-26T01:58:01,109 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-07-26T01:58:01,112 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-07-26T01:58:01,116 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-07-26T01:58:01,119 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-07-26T01:58:01,122 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-07-26T01:58:01,125 copying omicverse/single/_augur.py -> build/lib/omicverse/single 2026-07-26T01:58:01,128 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-07-26T01:58:01,131 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-07-26T01:58:01,134 copying omicverse/single/_dynamic_features.py -> build/lib/omicverse/single 2026-07-26T01:58:01,137 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-07-26T01:58:01,139 copying omicverse/single/_pseudotime_fate.py -> build/lib/omicverse/single 2026-07-26T01:58:01,143 copying omicverse/single/_nmf.py -> build/lib/omicverse/single 2026-07-26T01:58:01,146 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-07-26T01:58:01,148 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-07-26T01:58:01,153 copying omicverse/single/_cnv.py -> build/lib/omicverse/single 2026-07-26T01:58:01,155 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-07-26T01:58:01,158 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-07-26T01:58:01,160 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-07-26T01:58:01,163 copying omicverse/single/_cross_species.py -> build/lib/omicverse/single 2026-07-26T01:58:01,165 copying omicverse/single/_metabolism.py -> build/lib/omicverse/single 2026-07-26T01:58:01,168 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-07-26T01:58:01,171 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-07-26T01:58:01,174 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-07-26T01:58:01,177 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-07-26T01:58:01,180 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-07-26T01:58:01,182 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-07-26T01:58:01,185 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-07-26T01:58:01,188 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-07-26T01:58:01,190 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-07-26T01:58:01,193 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-07-26T01:58:01,196 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-07-26T01:58:01,202 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-07-26T01:58:01,204 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-07-26T01:58:01,207 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-07-26T01:58:01,209 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-07-26T01:58:01,212 creating build/lib/omicverse/mcp 2026-07-26T01:58:01,213 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,216 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,219 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,220 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,223 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,225 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,229 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,231 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,233 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,235 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,237 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,239 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,242 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-07-26T01:58:01,245 creating build/lib/omicverse/mol 2026-07-26T01:58:01,246 copying omicverse/mol/_dock.py -> build/lib/omicverse/mol 2026-07-26T01:58:01,248 copying omicverse/mol/_drugs.py -> build/lib/omicverse/mol 2026-07-26T01:58:01,251 copying omicverse/mol/__init__.py -> build/lib/omicverse/mol 2026-07-26T01:58:01,253 copying omicverse/mol/_pocket.py -> build/lib/omicverse/mol 2026-07-26T01:58:01,255 copying omicverse/mol/_check.py -> build/lib/omicverse/mol 2026-07-26T01:58:01,257 copying omicverse/mol/_view.py -> build/lib/omicverse/mol 2026-07-26T01:58:01,259 copying omicverse/mol/_structure.py -> build/lib/omicverse/mol 2026-07-26T01:58:01,261 creating build/lib/omicverse/agent 2026-07-26T01:58:01,262 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-07-26T01:58:01,266 creating build/lib/omicverse/pl 2026-07-26T01:58:01,267 copying omicverse/pl/_funkyheatmap.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,269 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,271 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,274 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,278 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,281 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,283 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,286 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,288 copying omicverse/pl/_upset.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,290 copying omicverse/pl/_branch_streamplot.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,293 copying omicverse/pl/_plot1cell.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,295 copying omicverse/pl/_nanostring.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,298 copying omicverse/pl/_dynamic_trends.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,301 copying omicverse/pl/_venn_backend.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,303 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,306 copying omicverse/pl/_heatmap_marsilea.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,310 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,313 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,315 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,321 copying omicverse/pl/_scanpy_compat.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,323 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,325 copying omicverse/pl/_cnv.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,328 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,331 copying omicverse/pl/_plot_backend.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,335 copying omicverse/pl/_ccc.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,341 copying omicverse/pl/_metabolism.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,343 copying omicverse/pl/_perturbation.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,346 copying omicverse/pl/_metacell.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,349 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,352 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,355 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,358 copying omicverse/pl/_report.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,360 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,365 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,367 copying omicverse/pl/_trajectory.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,371 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,374 copying omicverse/pl/_scatterplot_backend.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,379 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,382 copying omicverse/pl/_qc.py -> build/lib/omicverse/pl 2026-07-26T01:58:01,385 creating build/lib/omicverse/tl 2026-07-26T01:58:01,386 copying omicverse/tl/__init__.py -> build/lib/omicverse/tl 2026-07-26T01:58:01,388 copying omicverse/tl/_cross_species.py -> build/lib/omicverse/tl 2026-07-26T01:58:01,392 creating build/lib/omicverse/synbio 2026-07-26T01:58:01,393 copying omicverse/synbio/_rnadesign.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,396 copying omicverse/synbio/_sbol.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,399 copying omicverse/synbio/_dynamic.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,401 copying omicverse/synbio/_binder.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,403 copying omicverse/synbio/_thermo.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,405 copying omicverse/synbio/_stability.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,407 copying omicverse/synbio/_kcat.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,410 copying omicverse/synbio/__init__.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,412 copying omicverse/synbio/_codon.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,414 copying omicverse/synbio/_expression.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,417 copying omicverse/synbio/_device.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,419 copying omicverse/synbio/_seqview.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,421 copying omicverse/synbio/_clean.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,423 copying omicverse/synbio/_evaluate.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,425 copying omicverse/synbio/_esm_common.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,427 copying omicverse/synbio/_circuit.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,430 copying omicverse/synbio/_strain.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,436 copying omicverse/synbio/_proteinmpnn.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,438 copying omicverse/synbio/_library.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,440 copying omicverse/synbio/_retrobio.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,443 copying omicverse/synbio/_thermompnn.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,445 copying omicverse/synbio/_gem.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,448 copying omicverse/synbio/_boltz.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,451 copying omicverse/synbio/_variant.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,453 copying omicverse/synbio/_cfd.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,456 copying omicverse/synbio/_retro.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,458 copying omicverse/synbio/_primedesign.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,461 copying omicverse/synbio/_design.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,463 copying omicverse/synbio/_embed.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,465 copying omicverse/synbio/_crispr.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,468 copying omicverse/synbio/_structure.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,471 copying omicverse/synbio/_plot.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,474 copying omicverse/synbio/_ec.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,476 copying omicverse/synbio/_assembly.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,479 copying omicverse/synbio/_mrna.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,481 copying omicverse/synbio/_rna.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,484 copying omicverse/synbio/_editing.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,487 copying omicverse/synbio/_function.py -> build/lib/omicverse/synbio 2026-07-26T01:58:01,491 creating build/lib/omicverse/bulk2single 2026-07-26T01:58:01,493 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-07-26T01:58:01,496 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-07-26T01:58:01,499 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-07-26T01:58:01,501 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-07-26T01:58:01,503 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-07-26T01:58:01,506 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-07-26T01:58:01,509 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-07-26T01:58:01,511 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-07-26T01:58:01,514 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-07-26T01:58:01,517 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-07-26T01:58:01,521 creating build/lib/omicverse/bulk 2026-07-26T01:58:01,522 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,524 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,527 copying omicverse/bulk/_gsea_numpy.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,531 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,533 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,538 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,562 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,566 copying omicverse/bulk/_ora.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,569 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,573 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,579 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,582 copying omicverse/bulk/_enrich_plot.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,586 copying omicverse/bulk/_wgcna.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,589 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,592 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-07-26T01:58:01,596 creating build/lib/omicverse/io 2026-07-26T01:58:01,598 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-07-26T01:58:01,601 creating build/lib/omicverse/epi 2026-07-26T01:58:01,603 copying omicverse/epi/bulk.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,606 copying omicverse/epi/_utils.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,609 copying omicverse/epi/__init__.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,611 copying omicverse/epi/io.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,614 copying omicverse/epi/upstream.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,617 copying omicverse/epi/tl.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,620 copying omicverse/epi/datasets.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,623 copying omicverse/epi/data.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,625 copying omicverse/epi/pp.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,628 copying omicverse/epi/utils.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,630 copying omicverse/epi/single.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,633 copying omicverse/epi/pl.py -> build/lib/omicverse/epi 2026-07-26T01:58:01,636 creating build/lib/omicverse/metabol 2026-07-26T01:58:01,637 copying omicverse/metabol/_stats.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,640 copying omicverse/metabol/_impute.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,642 copying omicverse/metabol/_integration.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,645 copying omicverse/metabol/_utils.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,647 copying omicverse/metabol/__init__.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,650 copying omicverse/metabol/io.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,652 copying omicverse/metabol/_batch.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,655 copying omicverse/metabol/_plsda.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,658 copying omicverse/metabol/_transform.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,660 copying omicverse/metabol/_msea.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,663 copying omicverse/metabol/_id_mapping.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,666 copying omicverse/metabol/pymetabo.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,668 copying omicverse/metabol/_biomarker.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,671 copying omicverse/metabol/_correlation.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,674 copying omicverse/metabol/_multifactor.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,676 copying omicverse/metabol/_mummichog.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,679 copying omicverse/metabol/_fetchers.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,681 copying omicverse/metabol/_lipidomics.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,684 copying omicverse/metabol/_norm.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,685 copying omicverse/metabol/plotting.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,688 copying omicverse/metabol/_qc.py -> build/lib/omicverse/metabol 2026-07-26T01:58:01,691 creating build/lib/omicverse/space/histo 2026-07-26T01:58:01,692 copying omicverse/space/histo/_stpath.py -> build/lib/omicverse/space/histo 2026-07-26T01:58:01,695 copying omicverse/space/histo/__init__.py -> build/lib/omicverse/space/histo 2026-07-26T01:58:01,697 copying omicverse/space/histo/_io.py -> build/lib/omicverse/space/histo 2026-07-26T01:58:01,699 copying omicverse/space/histo/_stflow.py -> build/lib/omicverse/space/histo 2026-07-26T01:58:01,701 copying omicverse/space/histo/_istar.py -> build/lib/omicverse/space/histo 2026-07-26T01:58:01,704 copying omicverse/space/histo/_demo.py -> build/lib/omicverse/space/histo 2026-07-26T01:58:01,706 copying omicverse/space/histo/_dispatch.py -> build/lib/omicverse/space/histo 2026-07-26T01:58:01,709 copying omicverse/space/histo/_embed.py -> build/lib/omicverse/space/histo 2026-07-26T01:58:01,711 copying omicverse/space/histo/_hest_fm.py -> build/lib/omicverse/space/histo 2026-07-26T01:58:01,714 creating build/lib/omicverse/pp/experimental 2026-07-26T01:58:01,715 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-07-26T01:58:01,717 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-07-26T01:58:01,719 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-07-26T01:58:01,722 creating build/lib/omicverse/pp/ambient 2026-07-26T01:58:01,723 copying omicverse/pp/ambient/__init__.py -> build/lib/omicverse/pp/ambient 2026-07-26T01:58:01,725 copying omicverse/pp/ambient/_diagnostics.py -> build/lib/omicverse/pp/ambient 2026-07-26T01:58:01,728 copying omicverse/pp/ambient/_ambient.py -> build/lib/omicverse/pp/ambient 2026-07-26T01:58:01,730 copying omicverse/pp/ambient/_plotting.py -> build/lib/omicverse/pp/ambient 2026-07-26T01:58:01,733 creating build/lib/omicverse/pp/_scrublet_backend 2026-07-26T01:58:01,734 copying omicverse/pp/_scrublet_backend/helper_functions.py -> build/lib/omicverse/pp/_scrublet_backend 2026-07-26T01:58:01,736 copying omicverse/pp/_scrublet_backend/__init__.py -> build/lib/omicverse/pp/_scrublet_backend 2026-07-26T01:58:01,738 copying omicverse/pp/_scrublet_backend/scrublet.py -> build/lib/omicverse/pp/_scrublet_backend 2026-07-26T01:58:01,741 creating build/lib/omicverse/external/STAGATE_pyG 2026-07-26T01:58:01,742 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-07-26T01:58:01,744 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-07-26T01:58:01,747 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-07-26T01:58:01,749 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-07-26T01:58:01,751 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-07-26T01:58:01,754 creating build/lib/omicverse/external/camex 2026-07-26T01:58:01,755 copying omicverse/external/camex/params.py -> build/lib/omicverse/external/camex 2026-07-26T01:58:01,757 copying omicverse/external/camex/train_untils.py -> build/lib/omicverse/external/camex 2026-07-26T01:58:01,760 copying omicverse/external/camex/__init__.py -> build/lib/omicverse/external/camex 2026-07-26T01:58:01,761 copying omicverse/external/camex/preprocess_untils.py -> build/lib/omicverse/external/camex 2026-07-26T01:58:01,764 copying omicverse/external/camex/loss.py -> build/lib/omicverse/external/camex 2026-07-26T01:58:01,765 copying omicverse/external/camex/integration_metrics.py -> build/lib/omicverse/external/camex 2026-07-26T01:58:01,767 copying omicverse/external/camex/_run.py -> build/lib/omicverse/external/camex 2026-07-26T01:58:01,770 copying omicverse/external/camex/base.py -> build/lib/omicverse/external/camex 2026-07-26T01:58:01,772 copying omicverse/external/camex/trainer.py -> build/lib/omicverse/external/camex 2026-07-26T01:58:01,775 copying omicverse/external/camex/layer.py -> build/lib/omicverse/external/camex 2026-07-26T01:58:01,777 copying omicverse/external/camex/model.py -> build/lib/omicverse/external/camex 2026-07-26T01:58:01,780 creating build/lib/omicverse/external/monocle2_py 2026-07-26T01:58:01,781 copying omicverse/external/monocle2_py/dimension_reduction.py -> build/lib/omicverse/external/monocle2_py 2026-07-26T01:58:01,784 copying omicverse/external/monocle2_py/__init__.py -> build/lib/omicverse/external/monocle2_py 2026-07-26T01:58:01,786 copying omicverse/external/monocle2_py/ordering.py -> build/lib/omicverse/external/monocle2_py 2026-07-26T01:58:01,788 copying omicverse/external/monocle2_py/utils.py -> build/lib/omicverse/external/monocle2_py 2026-07-26T01:58:01,791 copying omicverse/external/monocle2_py/clustering.py -> build/lib/omicverse/external/monocle2_py 2026-07-26T01:58:01,793 copying omicverse/external/monocle2_py/plotting.py -> build/lib/omicverse/external/monocle2_py 2026-07-26T01:58:01,796 copying omicverse/external/monocle2_py/ddrtree.py -> build/lib/omicverse/external/monocle2_py 2026-07-26T01:58:01,799 copying omicverse/external/monocle2_py/core.py -> build/lib/omicverse/external/monocle2_py 2026-07-26T01:58:01,801 copying omicverse/external/monocle2_py/differential.py -> build/lib/omicverse/external/monocle2_py 2026-07-26T01:58:01,805 creating build/lib/omicverse/external/saturn 2026-07-26T01:58:01,806 copying omicverse/external/saturn/score_adata.py -> build/lib/omicverse/external/saturn 2026-07-26T01:58:01,809 copying omicverse/external/saturn/__init__.py -> build/lib/omicverse/external/saturn 2026-07-26T01:58:01,810 copying omicverse/external/saturn/pretrain_utils.py -> build/lib/omicverse/external/saturn 2026-07-26T01:58:01,812 copying omicverse/external/saturn/saturn_multiple_seeds.py -> build/lib/omicverse/external/saturn 2026-07-26T01:58:01,815 copying omicverse/external/saturn/_run.py -> build/lib/omicverse/external/saturn 2026-07-26T01:58:01,817 copying omicverse/external/saturn/_train_saturn.py -> build/lib/omicverse/external/saturn 2026-07-26T01:58:01,821 creating build/lib/omicverse/external/spaceflow 2026-07-26T01:58:01,822 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-07-26T01:58:01,824 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-07-26T01:58:01,826 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-07-26T01:58:01,829 creating build/lib/omicverse/external/starfysh 2026-07-26T01:58:01,830 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-07-26T01:58:01,832 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-07-26T01:58:01,835 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-07-26T01:58:01,837 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-07-26T01:58:01,840 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-07-26T01:58:01,843 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-07-26T01:58:01,845 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-07-26T01:58:01,848 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-07-26T01:58:01,850 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-07-26T01:58:01,854 creating build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,855 copying omicverse/external/pyensembl/ensembl_versions.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,857 copying omicverse/external/pyensembl/locus.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,859 copying omicverse/external/pyensembl/shell.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,861 copying omicverse/external/pyensembl/download_cache.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,863 copying omicverse/external/pyensembl/__init__.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,865 copying omicverse/external/pyensembl/sequence_data.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,868 copying omicverse/external/pyensembl/reference_name.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,870 copying omicverse/external/pyensembl/common.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,872 copying omicverse/external/pyensembl/transcript.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,874 copying omicverse/external/pyensembl/search.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,876 copying omicverse/external/pyensembl/locus_with_genome.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,878 copying omicverse/external/pyensembl/exon.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,880 copying omicverse/external/pyensembl/normalization.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,882 copying omicverse/external/pyensembl/ensembl_release.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,884 copying omicverse/external/pyensembl/database.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,887 copying omicverse/external/pyensembl/genome.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,890 copying omicverse/external/pyensembl/fasta.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,892 copying omicverse/external/pyensembl/serializable.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,895 copying omicverse/external/pyensembl/ensembl_url_templates.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,897 copying omicverse/external/pyensembl/species.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,899 copying omicverse/external/pyensembl/version.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,901 copying omicverse/external/pyensembl/gene.py -> build/lib/omicverse/external/pyensembl 2026-07-26T01:58:01,904 creating build/lib/omicverse/external/PROST 2026-07-26T01:58:01,905 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-07-26T01:58:01,907 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-07-26T01:58:01,909 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-07-26T01:58:01,912 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-07-26T01:58:01,915 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-07-26T01:58:01,917 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-07-26T01:58:01,920 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-07-26T01:58:01,922 creating build/lib/omicverse/external/BINARY 2026-07-26T01:58:01,923 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-07-26T01:58:01,926 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-07-26T01:58:01,927 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-07-26T01:58:01,930 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-07-26T01:58:01,933 creating build/lib/omicverse/external/pyedger 2026-07-26T01:58:01,934 copying omicverse/external/pyedger/__init__.py -> build/lib/omicverse/external/pyedger 2026-07-26T01:58:01,936 copying omicverse/external/pyedger/core.py -> build/lib/omicverse/external/pyedger 2026-07-26T01:58:01,940 creating build/lib/omicverse/external/scTenifold 2026-07-26T01:58:01,941 copying omicverse/external/scTenifold/__init__.py -> build/lib/omicverse/external/scTenifold 2026-07-26T01:58:01,943 copying omicverse/external/scTenifold/__main__.py -> build/lib/omicverse/external/scTenifold 2026-07-26T01:58:01,945 creating build/lib/omicverse/external/mpl_chord 2026-07-26T01:58:01,946 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-07-26T01:58:01,948 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-07-26T01:58:01,950 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-07-26T01:58:01,953 creating build/lib/omicverse/external/ctxcore 2026-07-26T01:58:01,954 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-07-26T01:58:01,957 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-07-26T01:58:01,960 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-07-26T01:58:01,961 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-07-26T01:58:01,964 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-07-26T01:58:01,966 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-07-26T01:58:01,968 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-07-26T01:58:01,971 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-07-26T01:58:01,974 creating build/lib/omicverse/external/somde 2026-07-26T01:58:01,975 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-07-26T01:58:01,977 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-07-26T01:58:01,979 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-07-26T01:58:01,982 creating build/lib/omicverse/external/scSLAT 2026-07-26T01:58:01,983 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-07-26T01:58:01,985 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-07-26T01:58:01,987 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-07-26T01:58:01,989 creating build/lib/omicverse/external/datacollect 2026-07-26T01:58:01,991 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-07-26T01:58:01,993 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-07-26T01:58:01,995 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-07-26T01:58:01,999 creating build/lib/omicverse/external/SpatialDE 2026-07-26T01:58:02,000 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-07-26T01:58:02,002 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-07-26T01:58:02,004 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-07-26T01:58:02,007 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-07-26T01:58:02,009 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-07-26T01:58:02,012 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-07-26T01:58:02,014 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-07-26T01:58:02,016 creating build/lib/omicverse/external/scfea 2026-07-26T01:58:02,018 copying omicverse/external/scfea/ClassFlux.py -> build/lib/omicverse/external/scfea 2026-07-26T01:58:02,020 copying omicverse/external/scfea/__init__.py -> build/lib/omicverse/external/scfea 2026-07-26T01:58:02,022 copying omicverse/external/scfea/DatasetFlux.py -> build/lib/omicverse/external/scfea 2026-07-26T01:58:02,024 copying omicverse/external/scfea/util.py -> build/lib/omicverse/external/scfea 2026-07-26T01:58:02,026 copying omicverse/external/scfea/scFEA.py -> build/lib/omicverse/external/scfea 2026-07-26T01:58:02,029 creating build/lib/omicverse/external/cellanova 2026-07-26T01:58:02,030 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-07-26T01:58:02,032 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-07-26T01:58:02,035 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-07-26T01:58:02,038 creating build/lib/omicverse/external/py_scmetabolism 2026-07-26T01:58:02,039 copying omicverse/external/py_scmetabolism/visualize.py -> build/lib/omicverse/external/py_scmetabolism 2026-07-26T01:58:02,042 copying omicverse/external/py_scmetabolism/__init__.py -> build/lib/omicverse/external/py_scmetabolism 2026-07-26T01:58:02,044 copying omicverse/external/py_scmetabolism/methods.py -> build/lib/omicverse/external/py_scmetabolism 2026-07-26T01:58:02,047 copying omicverse/external/py_scmetabolism/compute.py -> build/lib/omicverse/external/py_scmetabolism 2026-07-26T01:58:02,050 creating build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,052 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,055 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,057 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,060 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,062 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,065 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,068 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,071 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,073 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,076 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,078 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-07-26T01:58:02,081 creating build/lib/omicverse/external/cnmf 2026-07-26T01:58:02,083 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-07-26T01:58:02,086 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-07-26T01:58:02,090 creating build/lib/omicverse/external/STT 2026-07-26T01:58:02,092 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-07-26T01:58:02,094 creating build/lib/omicverse/external/bin2cell 2026-07-26T01:58:02,096 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-07-26T01:58:02,098 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-07-26T01:58:02,137 creating build/lib/omicverse/external/forcedirect2 2026-07-26T01:58:02,139 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-07-26T01:58:02,142 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-07-26T01:58:02,144 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-07-26T01:58:02,147 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-07-26T01:58:02,150 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-07-26T01:58:02,152 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-07-26T01:58:02,155 creating build/lib/omicverse/external/flowsig 2026-07-26T01:58:02,156 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-07-26T01:58:02,158 creating build/lib/omicverse/external/mebocost 2026-07-26T01:58:02,160 copying omicverse/external/mebocost/crosstalk_calculator.py -> build/lib/omicverse/external/mebocost 2026-07-26T01:58:02,163 copying omicverse/external/mebocost/MetEstimator.py -> build/lib/omicverse/external/mebocost 2026-07-26T01:58:02,166 copying omicverse/external/mebocost/__init__.py -> build/lib/omicverse/external/mebocost 2026-07-26T01:58:02,169 copying omicverse/external/mebocost/mebocost.py -> build/lib/omicverse/external/mebocost 2026-07-26T01:58:02,174 copying omicverse/external/mebocost/fba_handler.py -> build/lib/omicverse/external/mebocost 2026-07-26T01:58:02,176 copying omicverse/external/mebocost/crosstalk_diff.py -> build/lib/omicverse/external/mebocost 2026-07-26T01:58:02,179 copying omicverse/external/mebocost/crosstalk_plots.py -> build/lib/omicverse/external/mebocost 2026-07-26T01:58:02,184 creating build/lib/omicverse/external/scanorama 2026-07-26T01:58:02,185 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-07-26T01:58:02,188 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-07-26T01:58:02,191 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-07-26T01:58:02,193 creating build/lib/omicverse/external/gtfparse 2026-07-26T01:58:02,195 copying omicverse/external/gtfparse/create_missing_features.py -> build/lib/omicverse/external/gtfparse 2026-07-26T01:58:02,198 copying omicverse/external/gtfparse/parsing_error.py -> build/lib/omicverse/external/gtfparse 2026-07-26T01:58:02,200 copying omicverse/external/gtfparse/__init__.py -> build/lib/omicverse/external/gtfparse 2026-07-26T01:58:02,202 copying omicverse/external/gtfparse/attribute_parsing.py -> build/lib/omicverse/external/gtfparse 2026-07-26T01:58:02,204 copying omicverse/external/gtfparse/read_gtf.py -> build/lib/omicverse/external/gtfparse 2026-07-26T01:58:02,208 creating build/lib/omicverse/external/GNTD 2026-07-26T01:58:02,209 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-07-26T01:58:02,211 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-07-26T01:58:02,214 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-07-26T01:58:02,217 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-07-26T01:58:02,219 creating build/lib/omicverse/external/STAligner 2026-07-26T01:58:02,221 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-07-26T01:58:02,223 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-07-26T01:58:02,226 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-07-26T01:58:02,229 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-07-26T01:58:02,232 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-07-26T01:58:02,235 creating build/lib/omicverse/external/mofapy2 2026-07-26T01:58:02,237 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-07-26T01:58:02,239 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-07-26T01:58:02,241 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-07-26T01:58:02,243 creating build/lib/omicverse/external/spaco 2026-07-26T01:58:02,245 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-07-26T01:58:02,248 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-07-26T01:58:02,251 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-07-26T01:58:02,254 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-07-26T01:58:02,256 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-07-26T01:58:02,258 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-07-26T01:58:02,261 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-07-26T01:58:02,263 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-07-26T01:58:02,265 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-07-26T01:58:02,268 creating build/lib/omicverse/external/samap 2026-07-26T01:58:02,270 copying omicverse/external/samap/__init__.py -> build/lib/omicverse/external/samap 2026-07-26T01:58:02,272 copying omicverse/external/samap/_run.py -> build/lib/omicverse/external/samap 2026-07-26T01:58:02,275 copying omicverse/external/samap/utils.py -> build/lib/omicverse/external/samap 2026-07-26T01:58:02,277 copying omicverse/external/samap/mapping.py -> build/lib/omicverse/external/samap 2026-07-26T01:58:02,281 copying omicverse/external/samap/analysis.py -> build/lib/omicverse/external/samap 2026-07-26T01:58:02,285 creating build/lib/omicverse/external/MetaQ 2026-07-26T01:58:02,286 copying omicverse/external/MetaQ/__init__.py -> build/lib/omicverse/external/MetaQ 2026-07-26T01:58:02,289 copying omicverse/external/MetaQ/engine.py -> build/lib/omicverse/external/MetaQ 2026-07-26T01:58:02,291 copying omicverse/external/MetaQ/data_utils.py -> build/lib/omicverse/external/MetaQ 2026-07-26T01:58:02,294 copying omicverse/external/MetaQ/model.py -> build/lib/omicverse/external/MetaQ 2026-07-26T01:58:02,297 creating build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,298 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,301 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,303 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,306 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,308 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,310 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,312 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,315 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,317 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,320 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,322 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,324 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,326 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,329 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,332 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,336 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,338 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,342 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,344 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,347 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,350 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-07-26T01:58:02,353 creating build/lib/omicverse/external/topact 2026-07-26T01:58:02,355 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-07-26T01:58:02,358 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-07-26T01:58:02,360 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-07-26T01:58:02,364 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-07-26T01:58:02,367 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-07-26T01:58:02,372 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-07-26T01:58:02,375 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-07-26T01:58:02,378 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-07-26T01:58:02,381 creating build/lib/omicverse/external/spatrio 2026-07-26T01:58:02,383 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-07-26T01:58:02,386 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-07-26T01:58:02,389 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-07-26T01:58:02,392 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-07-26T01:58:02,394 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-07-26T01:58:02,398 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-07-26T01:58:02,401 creating build/lib/omicverse/external/tosica 2026-07-26T01:58:02,402 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-07-26T01:58:02,406 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-07-26T01:58:02,408 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-07-26T01:58:02,411 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-07-26T01:58:02,414 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-07-26T01:58:02,420 creating build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,421 copying omicverse/external/gsmap/_regression_read.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,423 copying omicverse/external/gsmap/_visualize.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,426 copying omicverse/external/gsmap/diagnosis.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,429 copying omicverse/external/gsmap/__init__.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,431 copying omicverse/external/gsmap/find_latent_representation.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,433 copying omicverse/external/gsmap/spatial_ldsc.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,436 copying omicverse/external/gsmap/_manhattan_plot.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,438 copying omicverse/external/gsmap/generate_ldscore.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,440 copying omicverse/external/gsmap/latent_to_gene.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,442 copying omicverse/external/gsmap/_jackknife.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,444 copying omicverse/external/gsmap/report.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,446 copying omicverse/external/gsmap/_style.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,448 copying omicverse/external/gsmap/_config.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,450 copying omicverse/external/gsmap/cauchy_combination.py -> build/lib/omicverse/external/gsmap 2026-07-26T01:58:02,452 creating build/lib/omicverse/external/nocd 2026-07-26T01:58:02,453 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-07-26T01:58:02,455 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-07-26T01:58:02,457 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-07-26T01:58:02,459 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-07-26T01:58:02,461 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-07-26T01:58:02,463 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-07-26T01:58:02,465 creating build/lib/omicverse/external/scMulan 2026-07-26T01:58:02,466 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-07-26T01:58:02,467 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-07-26T01:58:02,470 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-07-26T01:58:02,472 creating build/lib/omicverse/external/geosketch 2026-07-26T01:58:02,473 copying omicverse/external/geosketch/__init__.py -> build/lib/omicverse/external/geosketch 2026-07-26T01:58:02,475 copying omicverse/external/geosketch/sketch.py -> build/lib/omicverse/external/geosketch 2026-07-26T01:58:02,478 copying omicverse/external/geosketch/kmeanspp.py -> build/lib/omicverse/external/geosketch 2026-07-26T01:58:02,480 copying omicverse/external/geosketch/utils.py -> build/lib/omicverse/external/geosketch 2026-07-26T01:58:02,482 creating build/lib/omicverse/external/cellcharter 2026-07-26T01:58:02,483 copying omicverse/external/cellcharter/_utils.py -> build/lib/omicverse/external/cellcharter 2026-07-26T01:58:02,485 copying omicverse/external/cellcharter/__init__.py -> build/lib/omicverse/external/cellcharter 2026-07-26T01:58:02,487 copying omicverse/external/cellcharter/_graph.py -> build/lib/omicverse/external/cellcharter 2026-07-26T01:58:02,488 copying omicverse/external/cellcharter/_gmm.py -> build/lib/omicverse/external/cellcharter 2026-07-26T01:58:02,491 copying omicverse/external/cellcharter/_aggr.py -> build/lib/omicverse/external/cellcharter 2026-07-26T01:58:02,493 copying omicverse/external/cellcharter/_autok.py -> build/lib/omicverse/external/cellcharter 2026-07-26T01:58:02,496 creating build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,497 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,498 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,501 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,503 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,504 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,506 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,508 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,511 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,512 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,514 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,516 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,518 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,520 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-07-26T01:58:02,522 creating build/lib/omicverse/external/PyWGCNA 2026-07-26T01:58:02,523 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-07-26T01:58:02,526 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-07-26T01:58:02,528 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-07-26T01:58:02,534 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-07-26T01:58:02,536 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-07-26T01:58:02,539 creating build/lib/omicverse/external/istar 2026-07-26T01:58:02,540 copying omicverse/external/istar/select_genes.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,542 copying omicverse/external/istar/pixannot.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,543 copying omicverse/external/istar/vision_transformer4k.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,546 copying omicverse/external/istar/plot_spots.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,549 copying omicverse/external/istar/extract_features.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,552 copying omicverse/external/istar/image.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,554 copying omicverse/external/istar/__init__.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,556 copying omicverse/external/istar/get_mask.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,557 copying omicverse/external/istar/preprocess.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,559 copying omicverse/external/istar/hipt_4k.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,561 copying omicverse/external/istar/vision_transformer.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,564 copying omicverse/external/istar/train.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,566 copying omicverse/external/istar/cluster.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,568 copying omicverse/external/istar/structural_similarity.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,570 copying omicverse/external/istar/utils.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,572 copying omicverse/external/istar/hipt_heatmap_utils.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,575 copying omicverse/external/istar/impute_by_basic.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,577 copying omicverse/external/istar/plot_imputed.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,579 copying omicverse/external/istar/aggregate_imputed.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,581 copying omicverse/external/istar/rescale.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,582 copying omicverse/external/istar/impute.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,585 copying omicverse/external/istar/reorganize_imputed.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,586 copying omicverse/external/istar/connected_components.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,588 copying omicverse/external/istar/enrich.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,590 copying omicverse/external/istar/visual.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,592 copying omicverse/external/istar/hipt_model_utils.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,594 copying omicverse/external/istar/differential.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,596 copying omicverse/external/istar/marker_score.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,598 copying omicverse/external/istar/reduce_dim.py -> build/lib/omicverse/external/istar 2026-07-26T01:58:02,600 creating build/lib/omicverse/external/torch_pca 2026-07-26T01:58:02,601 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-07-26T01:58:02,603 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-07-26T01:58:02,605 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-07-26T01:58:02,607 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-07-26T01:58:02,609 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-07-26T01:58:02,612 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-07-26T01:58:02,614 creating build/lib/omicverse/external/umap_pytorch 2026-07-26T01:58:02,615 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-07-26T01:58:02,617 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-07-26T01:58:02,619 copying omicverse/external/umap_pytorch/fuzzy_gpu.py -> build/lib/omicverse/external/umap_pytorch 2026-07-26T01:58:02,621 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-07-26T01:58:02,623 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-07-26T01:58:02,626 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-07-26T01:58:02,628 creating build/lib/omicverse/external/NaiveDE 2026-07-26T01:58:02,629 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-07-26T01:58:02,631 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-07-26T01:58:02,633 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-07-26T01:58:02,635 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-07-26T01:58:02,637 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-07-26T01:58:02,638 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-07-26T01:58:02,640 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-07-26T01:58:02,643 creating build/lib/omicverse/external/graphvelo 2026-07-26T01:58:02,644 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-07-26T01:58:02,646 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-07-26T01:58:02,648 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-07-26T01:58:02,650 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-07-26T01:58:02,652 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-07-26T01:58:02,655 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-07-26T01:58:02,657 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-07-26T01:58:02,660 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-07-26T01:58:02,662 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-07-26T01:58:02,665 creating build/lib/omicverse/external/commot 2026-07-26T01:58:02,666 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-07-26T01:58:02,669 creating build/lib/omicverse/external/scdiffusion 2026-07-26T01:58:02,670 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-07-26T01:58:02,672 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-07-26T01:58:02,674 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-07-26T01:58:02,676 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-07-26T01:58:02,678 creating build/lib/omicverse/external/VIA 2026-07-26T01:58:02,679 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-07-26T01:58:02,685 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-07-26T01:58:02,688 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-07-26T01:58:02,690 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-07-26T01:58:02,692 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-07-26T01:58:02,696 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-07-26T01:58:02,702 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-07-26T01:58:02,708 creating build/lib/omicverse/external/supercell 2026-07-26T01:58:02,709 copying omicverse/external/supercell/supercell.py -> build/lib/omicverse/external/supercell 2026-07-26T01:58:02,711 copying omicverse/external/supercell/__init__.py -> build/lib/omicverse/external/supercell 2026-07-26T01:58:02,713 creating build/lib/omicverse/external/harmony 2026-07-26T01:58:02,714 copying omicverse/external/harmony/_harmony_mlx.py -> build/lib/omicverse/external/harmony 2026-07-26T01:58:02,717 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-07-26T01:58:02,719 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-07-26T01:58:02,721 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-07-26T01:58:02,723 copying omicverse/external/harmony/_harmony_cpu.py -> build/lib/omicverse/external/harmony 2026-07-26T01:58:02,726 creating build/lib/omicverse/external/GraphST 2026-07-26T01:58:02,727 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-07-26T01:58:02,729 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-07-26T01:58:02,731 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-07-26T01:58:02,734 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-07-26T01:58:02,736 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-07-26T01:58:02,739 creating build/lib/omicverse/external/CAST 2026-07-26T01:58:02,740 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-07-26T01:58:02,742 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-07-26T01:58:02,744 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-07-26T01:58:02,746 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-07-26T01:58:02,748 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-07-26T01:58:02,751 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-07-26T01:58:02,753 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-07-26T01:58:02,756 creating build/lib/omicverse/external/gaston 2026-07-26T01:58:02,757 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,760 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,761 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,763 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,765 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,767 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,769 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,771 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,773 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,774 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,776 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,779 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,781 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,783 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,785 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,787 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-07-26T01:58:02,789 creating build/lib/omicverse/external/pylimma 2026-07-26T01:58:02,790 copying omicverse/external/pylimma/__init__.py -> build/lib/omicverse/external/pylimma 2026-07-26T01:58:02,792 copying omicverse/external/pylimma/fit.py -> build/lib/omicverse/external/pylimma 2026-07-26T01:58:02,796 creating build/lib/omicverse/external/palantir 2026-07-26T01:58:02,797 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-07-26T01:58:02,799 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-07-26T01:58:02,801 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-07-26T01:58:02,803 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-07-26T01:58:02,805 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-07-26T01:58:02,807 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-07-26T01:58:02,810 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-07-26T01:58:02,813 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-07-26T01:58:02,817 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-07-26T01:58:02,819 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-07-26T01:58:02,821 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-07-26T01:58:02,823 creating build/lib/omicverse/external/popv 2026-07-26T01:58:02,824 copying omicverse/external/popv/_settings.py -> build/lib/omicverse/external/popv 2026-07-26T01:58:02,827 copying omicverse/external/popv/_utils.py -> build/lib/omicverse/external/popv 2026-07-26T01:58:02,829 copying omicverse/external/popv/__init__.py -> build/lib/omicverse/external/popv 2026-07-26T01:58:02,830 copying omicverse/external/popv/visualization.py -> build/lib/omicverse/external/popv 2026-07-26T01:58:02,833 copying omicverse/external/popv/preprocessing.py -> build/lib/omicverse/external/popv 2026-07-26T01:58:02,835 copying omicverse/external/popv/annotation.py -> build/lib/omicverse/external/popv 2026-07-26T01:58:02,838 creating build/lib/omicverse/external/mcRigor 2026-07-26T01:58:02,839 copying omicverse/external/mcRigor/__init__.py -> build/lib/omicverse/external/mcRigor 2026-07-26T01:58:02,841 copying omicverse/external/mcRigor/rigor.py -> build/lib/omicverse/external/mcRigor 2026-07-26T01:58:02,844 creating build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,845 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,847 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,849 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,851 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,853 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,856 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,858 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,860 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,863 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,866 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,868 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,869 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-07-26T01:58:02,871 creating build/lib/omicverse/external/tape 2026-07-26T01:58:02,872 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-07-26T01:58:02,874 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-07-26T01:58:02,877 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-07-26T01:58:02,879 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-07-26T01:58:02,881 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-07-26T01:58:02,883 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-07-26T01:58:02,886 creating build/lib/omicverse/external/CEFCON 2026-07-26T01:58:02,887 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-07-26T01:58:02,890 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-07-26T01:58:02,892 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-07-26T01:58:02,894 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-07-26T01:58:02,896 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-07-26T01:58:02,899 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-07-26T01:58:02,901 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-07-26T01:58:02,904 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-07-26T01:58:02,906 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-07-26T01:58:02,909 creating build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,910 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,913 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,914 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,916 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,918 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,921 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,923 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,926 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,928 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,930 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,932 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,935 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,937 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,939 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,941 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-07-26T01:58:02,944 creating build/lib/omicverse/external/cytotrace2 2026-07-26T01:58:02,945 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-07-26T01:58:02,947 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-07-26T01:58:02,949 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-07-26T01:58:02,951 creating build/lib/omicverse/external/bulk2single 2026-07-26T01:58:02,952 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-07-26T01:58:02,954 creating build/lib/omicverse/external/saturn/data 2026-07-26T01:58:02,955 copying omicverse/external/saturn/data/__init__.py -> build/lib/omicverse/external/saturn/data 2026-07-26T01:58:02,957 copying omicverse/external/saturn/data/multi_species_data.py -> build/lib/omicverse/external/saturn/data 2026-07-26T01:58:02,960 copying omicverse/external/saturn/data/gene_embeddings.py -> build/lib/omicverse/external/saturn/data 2026-07-26T01:58:02,962 creating build/lib/omicverse/external/saturn/model 2026-07-26T01:58:02,963 copying omicverse/external/saturn/model/__init__.py -> build/lib/omicverse/external/saturn/model 2026-07-26T01:58:02,965 copying omicverse/external/saturn/model/saturn_model.py -> build/lib/omicverse/external/saturn/model 2026-07-26T01:58:02,968 creating build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,969 copying omicverse/external/saturn/utils/transformations.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,972 copying omicverse/external/saturn/utils/loss_tracker.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,974 copying omicverse/external/saturn/utils/__init__.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,975 copying omicverse/external/saturn/utils/module_with_records_and_reducer.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,977 copying omicverse/external/saturn/utils/inference.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,979 copying omicverse/external/saturn/utils/distributed.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,981 copying omicverse/external/saturn/utils/loss_and_miner_utils.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,984 copying omicverse/external/saturn/utils/stop_conditions.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,986 copying omicverse/external/saturn/utils/stat_utils.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,988 copying omicverse/external/saturn/utils/accuracy_calculator.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,990 copying omicverse/external/saturn/utils/common_functions.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,992 copying omicverse/external/saturn/utils/module_with_records.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,994 copying omicverse/external/saturn/utils/logging_presets.py -> build/lib/omicverse/external/saturn/utils 2026-07-26T01:58:02,997 creating build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:02,998 copying omicverse/external/saturn/losses/mixins.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,000 copying omicverse/external/saturn/losses/intra_pair_variance_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,002 copying omicverse/external/saturn/losses/circle_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,004 copying omicverse/external/saturn/losses/fast_ap_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,006 copying omicverse/external/saturn/losses/ntxent_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,008 copying omicverse/external/saturn/losses/contrastive_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,010 copying omicverse/external/saturn/losses/base_metric_loss_function.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,012 copying omicverse/external/saturn/losses/__init__.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,014 copying omicverse/external/saturn/losses/signal_to_noise_ratio_losses.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,015 copying omicverse/external/saturn/losses/triplet_margin_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,017 copying omicverse/external/saturn/losses/cross_batch_memory.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,019 copying omicverse/external/saturn/losses/cosface_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,021 copying omicverse/external/saturn/losses/proxy_losses.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,023 copying omicverse/external/saturn/losses/proxy_anchor_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,025 copying omicverse/external/saturn/losses/tuplet_margin_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,027 copying omicverse/external/saturn/losses/angular_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,029 copying omicverse/external/saturn/losses/lifted_structure_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,031 copying omicverse/external/saturn/losses/margin_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,032 copying omicverse/external/saturn/losses/large_margin_softmax_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,035 copying omicverse/external/saturn/losses/sphereface_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,037 copying omicverse/external/saturn/losses/multi_similarity_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,038 copying omicverse/external/saturn/losses/triplet_margin_mmd_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,040 copying omicverse/external/saturn/losses/arcface_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,042 copying omicverse/external/saturn/losses/nca_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,044 copying omicverse/external/saturn/losses/n_pairs_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,046 copying omicverse/external/saturn/losses/normalized_softmax_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,047 copying omicverse/external/saturn/losses/generic_pair_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,049 copying omicverse/external/saturn/losses/soft_triple_loss.py -> build/lib/omicverse/external/saturn/losses 2026-07-26T01:58:03,051 creating build/lib/omicverse/external/saturn/testers 2026-07-26T01:58:03,052 copying omicverse/external/saturn/testers/global_embedding_space.py -> build/lib/omicverse/external/saturn/testers 2026-07-26T01:58:03,054 copying omicverse/external/saturn/testers/base_tester.py -> build/lib/omicverse/external/saturn/testers 2026-07-26T01:58:03,056 copying omicverse/external/saturn/testers/with_same_parent_label.py -> build/lib/omicverse/external/saturn/testers 2026-07-26T01:58:03,058 copying omicverse/external/saturn/testers/__init__.py -> build/lib/omicverse/external/saturn/testers 2026-07-26T01:58:03,060 copying omicverse/external/saturn/testers/global_twostream_embedding_space.py -> build/lib/omicverse/external/saturn/testers 2026-07-26T01:58:03,062 creating build/lib/omicverse/external/saturn/reducers 2026-07-26T01:58:03,063 copying omicverse/external/saturn/reducers/do_nothing_reducer.py -> build/lib/omicverse/external/saturn/reducers 2026-07-26T01:58:03,065 copying omicverse/external/saturn/reducers/per_anchor_reducer.py -> build/lib/omicverse/external/saturn/reducers 2026-07-26T01:58:03,067 copying omicverse/external/saturn/reducers/class_weighted_reducer.py -> build/lib/omicverse/external/saturn/reducers 2026-07-26T01:58:03,068 copying omicverse/external/saturn/reducers/__init__.py -> build/lib/omicverse/external/saturn/reducers 2026-07-26T01:58:03,070 copying omicverse/external/saturn/reducers/base_reducer.py -> build/lib/omicverse/external/saturn/reducers 2026-07-26T01:58:03,072 copying omicverse/external/saturn/reducers/multiple_reducers.py -> build/lib/omicverse/external/saturn/reducers 2026-07-26T01:58:03,074 copying omicverse/external/saturn/reducers/threshold_reducer.py -> build/lib/omicverse/external/saturn/reducers 2026-07-26T01:58:03,075 copying omicverse/external/saturn/reducers/avg_non_zero_reducer.py -> build/lib/omicverse/external/saturn/reducers 2026-07-26T01:58:03,077 copying omicverse/external/saturn/reducers/divisor_reducer.py -> build/lib/omicverse/external/saturn/reducers 2026-07-26T01:58:03,079 copying omicverse/external/saturn/reducers/mean_reducer.py -> build/lib/omicverse/external/saturn/reducers 2026-07-26T01:58:03,081 creating build/lib/omicverse/external/saturn/distances 2026-07-26T01:58:03,082 copying omicverse/external/saturn/distances/snr_distance.py -> build/lib/omicverse/external/saturn/distances 2026-07-26T01:58:03,084 copying omicverse/external/saturn/distances/__init__.py -> build/lib/omicverse/external/saturn/distances 2026-07-26T01:58:03,086 copying omicverse/external/saturn/distances/lp_distance.py -> build/lib/omicverse/external/saturn/distances 2026-07-26T01:58:03,088 copying omicverse/external/saturn/distances/base_distance.py -> build/lib/omicverse/external/saturn/distances 2026-07-26T01:58:03,090 copying omicverse/external/saturn/distances/dot_product_similarity.py -> build/lib/omicverse/external/saturn/distances 2026-07-26T01:58:03,091 copying omicverse/external/saturn/distances/cosine_similarity.py -> build/lib/omicverse/external/saturn/distances 2026-07-26T01:58:03,094 creating build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,095 copying omicverse/external/saturn/miners/__init__.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,097 copying omicverse/external/saturn/miners/maximum_loss_miner.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,100 copying omicverse/external/saturn/miners/base_miner.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,102 copying omicverse/external/saturn/miners/uniform_histogram_miner.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,104 copying omicverse/external/saturn/miners/batch_hard_miner.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,106 copying omicverse/external/saturn/miners/hdc_miner.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,108 copying omicverse/external/saturn/miners/batch_easy_hard_miner.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,110 copying omicverse/external/saturn/miners/angular_miner.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,112 copying omicverse/external/saturn/miners/multi_similarity_miner.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,114 copying omicverse/external/saturn/miners/triplet_margin_miner.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,115 copying omicverse/external/saturn/miners/pair_margin_miner.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,117 copying omicverse/external/saturn/miners/embeddings_already_packaged_as_triplets.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,119 copying omicverse/external/saturn/miners/distance_weighted_miner.py -> build/lib/omicverse/external/saturn/miners 2026-07-26T01:58:03,121 creating build/lib/omicverse/external/space/cell2location 2026-07-26T01:58:03,123 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-07-26T01:58:03,124 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-07-26T01:58:03,127 creating build/lib/omicverse/external/space/cell2location/nn 2026-07-26T01:58:03,128 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-07-26T01:58:03,131 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-07-26T01:58:03,132 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-07-26T01:58:03,135 creating build/lib/omicverse/external/space/cell2location/models 2026-07-26T01:58:03,136 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-07-26T01:58:03,139 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-07-26T01:58:03,147 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-07-26T01:58:03,150 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-07-26T01:58:03,152 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-07-26T01:58:03,156 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-07-26T01:58:03,157 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-07-26T01:58:03,160 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-07-26T01:58:03,163 creating build/lib/omicverse/external/space/cell2location/utils 2026-07-26T01:58:03,164 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-07-26T01:58:03,167 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-07-26T01:58:03,171 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-07-26T01:58:03,174 creating build/lib/omicverse/external/space/cell2location/plt 2026-07-26T01:58:03,176 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-07-26T01:58:03,179 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-07-26T01:58:03,182 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-07-26T01:58:03,185 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-07-26T01:58:03,189 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-07-26T01:58:03,192 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-07-26T01:58:03,195 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-07-26T01:58:03,198 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-07-26T01:58:03,202 creating build/lib/omicverse/external/space/cell2location/distributions 2026-07-26T01:58:03,204 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-07-26T01:58:03,206 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-07-26T01:58:03,210 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-07-26T01:58:03,213 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-07-26T01:58:03,216 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-07-26T01:58:03,220 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-07-26T01:58:03,222 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-07-26T01:58:03,225 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-07-26T01:58:03,228 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-07-26T01:58:03,231 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-07-26T01:58:03,235 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-07-26T01:58:03,237 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-07-26T01:58:03,241 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-07-26T01:58:03,242 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-07-26T01:58:03,246 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-07-26T01:58:03,247 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-07-26T01:58:03,250 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-07-26T01:58:03,253 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-07-26T01:58:03,256 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-07-26T01:58:03,257 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-07-26T01:58:03,260 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-07-26T01:58:03,262 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-07-26T01:58:03,266 creating build/lib/omicverse/external/space/cell2location/models/base 2026-07-26T01:58:03,267 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-07-26T01:58:03,270 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-07-26T01:58:03,273 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-07-26T01:58:03,274 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-07-26T01:58:03,277 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-07-26T01:58:03,280 creating build/lib/omicverse/external/scTenifold/plotting 2026-07-26T01:58:03,282 copying omicverse/external/scTenifold/plotting/__init__.py -> build/lib/omicverse/external/scTenifold/plotting 2026-07-26T01:58:03,284 copying omicverse/external/scTenifold/plotting/_dim_reduction.py -> build/lib/omicverse/external/scTenifold/plotting 2026-07-26T01:58:03,286 copying omicverse/external/scTenifold/plotting/_plotting.py -> build/lib/omicverse/external/scTenifold/plotting 2026-07-26T01:58:03,290 creating build/lib/omicverse/external/scTenifold/core 2026-07-26T01:58:03,291 copying omicverse/external/scTenifold/core/_ko.py -> build/lib/omicverse/external/scTenifold/core 2026-07-26T01:58:03,294 copying omicverse/external/scTenifold/core/_QC.py -> build/lib/omicverse/external/scTenifold/core 2026-07-26T01:58:03,296 copying omicverse/external/scTenifold/core/_types.py -> build/lib/omicverse/external/scTenifold/core 2026-07-26T01:58:03,298 copying omicverse/external/scTenifold/core/_decomposition.py -> build/lib/omicverse/external/scTenifold/core 2026-07-26T01:58:03,301 copying omicverse/external/scTenifold/core/_networks.py -> build/lib/omicverse/external/scTenifold/core 2026-07-26T01:58:03,304 copying omicverse/external/scTenifold/core/_utils.py -> build/lib/omicverse/external/scTenifold/core 2026-07-26T01:58:03,306 copying omicverse/external/scTenifold/core/__init__.py -> build/lib/omicverse/external/scTenifold/core 2026-07-26T01:58:03,308 copying omicverse/external/scTenifold/core/_api.py -> build/lib/omicverse/external/scTenifold/core 2026-07-26T01:58:03,310 copying omicverse/external/scTenifold/core/_base.py -> build/lib/omicverse/external/scTenifold/core 2026-07-26T01:58:03,313 copying omicverse/external/scTenifold/core/_norm.py -> build/lib/omicverse/external/scTenifold/core 2026-07-26T01:58:03,316 creating build/lib/omicverse/external/scTenifold/cell_cycle 2026-07-26T01:58:03,317 copying omicverse/external/scTenifold/cell_cycle/__init__.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-07-26T01:58:03,319 copying omicverse/external/scTenifold/cell_cycle/scoring.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-07-26T01:58:03,322 copying omicverse/external/scTenifold/cell_cycle/UCell.py -> build/lib/omicverse/external/scTenifold/cell_cycle 2026-07-26T01:58:03,324 creating build/lib/omicverse/external/scSLAT/viz 2026-07-26T01:58:03,326 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-07-26T01:58:03,328 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-07-26T01:58:03,331 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-07-26T01:58:03,334 creating build/lib/omicverse/external/scSLAT/model 2026-07-26T01:58:03,335 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-07-26T01:58:03,337 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-07-26T01:58:03,340 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-07-26T01:58:03,342 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-07-26T01:58:03,345 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-07-26T01:58:03,347 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-07-26T01:58:03,349 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-07-26T01:58:03,352 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-07-26T01:58:03,355 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-07-26T01:58:03,356 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-07-26T01:58:03,358 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-07-26T01:58:03,361 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-07-26T01:58:03,364 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-07-26T01:58:03,365 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-07-26T01:58:03,368 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-07-26T01:58:03,370 creating build/lib/omicverse/external/datacollect/utils 2026-07-26T01:58:03,372 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-07-26T01:58:03,374 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-07-26T01:58:03,377 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-07-26T01:58:03,379 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-07-26T01:58:03,382 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-07-26T01:58:03,385 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-07-26T01:58:03,388 creating build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,390 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,393 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,396 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,398 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,401 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,403 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,406 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,409 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,411 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,414 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,416 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,419 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,421 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,424 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,427 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,429 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,432 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,435 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,437 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,440 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,443 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,448 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,450 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,453 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,456 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,459 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,461 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,464 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,467 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,469 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,472 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,475 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,479 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,482 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-07-26T01:58:03,485 creating build/lib/omicverse/external/datacollect/config 2026-07-26T01:58:03,486 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-07-26T01:58:03,488 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-07-26T01:58:03,492 creating build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,494 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,498 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,501 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,504 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,507 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,510 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,512 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,514 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,517 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,520 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,523 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,525 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,528 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,531 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,533 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,536 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,540 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,545 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,552 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,771 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,773 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,776 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-07-26T01:58:03,780 creating build/lib/omicverse/external/datacollect/api/specialized 2026-07-26T01:58:03,781 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-07-26T01:58:03,784 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-07-26T01:58:03,787 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-07-26T01:58:03,790 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-07-26T01:58:03,793 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-07-26T01:58:03,796 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-07-26T01:58:03,798 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-07-26T01:58:03,801 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-07-26T01:58:03,804 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-07-26T01:58:03,807 creating build/lib/omicverse/external/datacollect/api/proteins 2026-07-26T01:58:03,808 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-07-26T01:58:03,811 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-07-26T01:58:03,813 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-07-26T01:58:03,816 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-07-26T01:58:03,818 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-07-26T01:58:03,821 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-07-26T01:58:03,824 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-07-26T01:58:03,827 creating build/lib/omicverse/external/datacollect/api/pathways 2026-07-26T01:58:03,828 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-07-26T01:58:03,830 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-07-26T01:58:03,833 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-07-26T01:58:03,837 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-07-26T01:58:03,843 creating build/lib/omicverse/external/datacollect/api/expression 2026-07-26T01:58:03,845 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-07-26T01:58:03,848 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-07-26T01:58:03,850 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-07-26T01:58:03,852 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-07-26T01:58:03,855 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-07-26T01:58:03,857 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-07-26T01:58:03,860 creating build/lib/omicverse/external/datacollect/api/genomics 2026-07-26T01:58:03,861 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-07-26T01:58:03,864 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-07-26T01:58:03,866 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-07-26T01:58:03,868 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-07-26T01:58:03,870 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-07-26T01:58:03,872 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-07-26T01:58:03,875 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-07-26T01:58:03,877 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-07-26T01:58:03,880 creating build/lib/omicverse/external/STT/pl 2026-07-26T01:58:03,881 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-07-26T01:58:03,884 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-07-26T01:58:03,887 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-07-26T01:58:03,889 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-07-26T01:58:03,892 creating build/lib/omicverse/external/STT/tl 2026-07-26T01:58:03,893 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-07-26T01:58:03,896 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-07-26T01:58:03,898 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-07-26T01:58:03,900 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-07-26T01:58:03,903 creating build/lib/omicverse/external/flowsig/preprocessing 2026-07-26T01:58:03,904 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-07-26T01:58:03,906 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-07-26T01:58:03,909 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-07-26T01:58:03,911 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-07-26T01:58:03,913 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-07-26T01:58:03,915 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-07-26T01:58:03,917 creating build/lib/omicverse/external/flowsig/plotting 2026-07-26T01:58:03,919 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-07-26T01:58:03,920 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-07-26T01:58:03,923 creating build/lib/omicverse/external/flowsig/utilities 2026-07-26T01:58:03,924 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-07-26T01:58:03,927 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-07-26T01:58:03,929 creating build/lib/omicverse/external/flowsig/tools 2026-07-26T01:58:03,931 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-07-26T01:58:03,933 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-07-26T01:58:03,935 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-07-26T01:58:03,938 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-07-26T01:58:03,942 creating build/lib/omicverse/external/mofapy2/build_model 2026-07-26T01:58:03,943 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-07-26T01:58:03,946 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-07-26T01:58:03,948 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-07-26T01:58:03,951 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-07-26T01:58:03,953 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-07-26T01:58:03,957 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-07-26T01:58:03,959 creating build/lib/omicverse/external/mofapy2/simulate 2026-07-26T01:58:03,961 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-07-26T01:58:03,963 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-07-26T01:58:03,966 creating build/lib/omicverse/external/mofapy2/run 2026-07-26T01:58:03,967 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-07-26T01:58:03,972 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-07-26T01:58:03,975 creating build/lib/omicverse/external/mofapy2/core 2026-07-26T01:58:03,976 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-07-26T01:58:03,980 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-07-26T01:58:03,982 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-07-26T01:58:03,984 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-07-26T01:58:03,987 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-07-26T01:58:03,991 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:03,993 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:03,995 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:03,998 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:04,000 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:04,004 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:04,006 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:04,008 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:04,010 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:04,013 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:04,016 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:04,018 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:04,022 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,023 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,026 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,029 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,031 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,034 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,036 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,039 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,042 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,044 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,046 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,049 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,051 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,053 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,055 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,058 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,060 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,062 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,066 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:04,069 creating build/lib/omicverse/external/spaco/external 2026-07-26T01:58:04,070 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-07-26T01:58:04,072 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-07-26T01:58:04,075 creating build/lib/omicverse/external/samap/samalg 2026-07-26T01:58:04,076 copying omicverse/external/samap/samalg/__init__.py -> build/lib/omicverse/external/samap/samalg 2026-07-26T01:58:04,080 copying omicverse/external/samap/samalg/utilities.py -> build/lib/omicverse/external/samap/samalg 2026-07-26T01:58:04,082 copying omicverse/external/samap/samalg/gui.py -> build/lib/omicverse/external/samap/samalg 2026-07-26T01:58:04,086 creating build/lib/omicverse/external/latentvelo/models 2026-07-26T01:58:04,087 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-07-26T01:58:04,090 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-07-26T01:58:04,093 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-07-26T01:58:04,097 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-07-26T01:58:04,099 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-07-26T01:58:04,101 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-07-26T01:58:04,104 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-07-26T01:58:04,106 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-07-26T01:58:04,109 creating build/lib/omicverse/external/latentvelo/plotting 2026-07-26T01:58:04,110 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-07-26T01:58:04,113 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-07-26T01:58:04,115 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-07-26T01:58:04,117 creating build/lib/omicverse/external/latentvelo/evaluation 2026-07-26T01:58:04,118 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-07-26T01:58:04,121 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-07-26T01:58:04,122 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-07-26T01:58:04,125 creating build/lib/omicverse/external/latentvelo/tools 2026-07-26T01:58:04,126 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-07-26T01:58:04,128 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-07-26T01:58:04,130 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-07-26T01:58:04,132 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-07-26T01:58:04,133 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-07-26T01:58:04,136 creating build/lib/omicverse/external/single/arboreto 2026-07-26T01:58:04,137 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-07-26T01:58:04,139 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-07-26T01:58:04,141 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-07-26T01:58:04,143 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-07-26T01:58:04,146 creating build/lib/omicverse/external/gsmap/gnn 2026-07-26T01:58:04,147 copying omicverse/external/gsmap/gnn/__init__.py -> build/lib/omicverse/external/gsmap/gnn 2026-07-26T01:58:04,149 copying omicverse/external/gsmap/gnn/train.py -> build/lib/omicverse/external/gsmap/gnn 2026-07-26T01:58:04,151 copying omicverse/external/gsmap/gnn/model.py -> build/lib/omicverse/external/gsmap/gnn 2026-07-26T01:58:04,154 copying omicverse/external/gsmap/gnn/adjacency_matrix.py -> build/lib/omicverse/external/gsmap/gnn 2026-07-26T01:58:04,157 creating build/lib/omicverse/external/nocd/nn 2026-07-26T01:58:04,158 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-07-26T01:58:04,161 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-07-26T01:58:04,163 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-07-26T01:58:04,166 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-07-26T01:58:04,168 creating build/lib/omicverse/external/nocd/metrics 2026-07-26T01:58:04,169 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-07-26T01:58:04,171 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-07-26T01:58:04,173 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-07-26T01:58:04,175 creating build/lib/omicverse/external/scMulan/model 2026-07-26T01:58:04,176 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-07-26T01:58:04,178 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-07-26T01:58:04,181 creating build/lib/omicverse/external/scMulan/utils 2026-07-26T01:58:04,182 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-07-26T01:58:04,184 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-07-26T01:58:04,187 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-07-26T01:58:04,188 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-07-26T01:58:04,192 creating build/lib/omicverse/external/commot/_utils 2026-07-26T01:58:04,193 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-07-26T01:58:04,196 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-07-26T01:58:04,197 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-07-26T01:58:04,199 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-07-26T01:58:04,201 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-07-26T01:58:04,204 creating build/lib/omicverse/external/commot/preprocessing 2026-07-26T01:58:04,205 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-07-26T01:58:04,207 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-07-26T01:58:04,209 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-07-26T01:58:04,212 creating build/lib/omicverse/external/commot/plotting 2026-07-26T01:58:04,213 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-07-26T01:58:04,215 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-07-26T01:58:04,218 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-07-26T01:58:04,221 creating build/lib/omicverse/external/commot/_optimal_transport 2026-07-26T01:58:04,222 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-07-26T01:58:04,224 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-07-26T01:58:04,227 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-07-26T01:58:04,229 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-07-26T01:58:04,232 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-07-26T01:58:04,235 creating build/lib/omicverse/external/commot/tools 2026-07-26T01:58:04,236 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-07-26T01:58:04,239 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-07-26T01:58:04,242 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-07-26T01:58:04,245 creating build/lib/omicverse/external/scdiffusion/VAE 2026-07-26T01:58:04,246 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-07-26T01:58:04,249 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-07-26T01:58:04,250 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-07-26T01:58:04,253 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,254 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,256 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,258 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,261 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,263 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,265 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,267 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,269 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,271 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,274 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,276 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,277 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,280 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,282 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,284 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,286 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,288 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,291 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:04,293 creating build/lib/omicverse/external/CAST/model 2026-07-26T01:58:04,294 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-07-26T01:58:04,296 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-07-26T01:58:04,299 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-07-26T01:58:04,302 creating build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,303 copying omicverse/external/popv/algorithms/_scanvi.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,305 copying omicverse/external/popv/algorithms/_scanorama.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,309 copying omicverse/external/popv/algorithms/__init__.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,311 copying omicverse/external/popv/algorithms/_svm.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,313 copying omicverse/external/popv/algorithms/_bbknn.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,315 copying omicverse/external/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,317 copying omicverse/external/popv/algorithms/_rf.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,319 copying omicverse/external/popv/algorithms/_celltypist.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,321 copying omicverse/external/popv/algorithms/_harmony.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,323 copying omicverse/external/popv/algorithms/_scvi.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,325 copying omicverse/external/popv/algorithms/_xgboost.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,327 copying omicverse/external/popv/algorithms/_onclass.py -> build/lib/omicverse/external/popv/algorithms 2026-07-26T01:58:04,330 creating build/lib/omicverse/external/popv/hub 2026-07-26T01:58:04,331 copying omicverse/external/popv/hub/__init__.py -> build/lib/omicverse/external/popv/hub 2026-07-26T01:58:04,333 copying omicverse/external/popv/hub/_get_metrics.py -> build/lib/omicverse/external/popv/hub 2026-07-26T01:58:04,334 copying omicverse/external/popv/hub/_model.py -> build/lib/omicverse/external/popv/hub 2026-07-26T01:58:04,337 copying omicverse/external/popv/hub/_metadata.py -> build/lib/omicverse/external/popv/hub 2026-07-26T01:58:04,339 copying omicverse/external/popv/hub/_template.py -> build/lib/omicverse/external/popv/hub 2026-07-26T01:58:04,341 creating build/lib/omicverse/external/CEFCON/resources 2026-07-26T01:58:04,342 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-07-26T01:58:04,345 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:04,346 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:04,348 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:04,350 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:04,353 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:04,355 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:04,358 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:04,361 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:04,364 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:04,367 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:04,370 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:04,372 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:04,373 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:04,375 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:04,377 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:04,379 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:04,381 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:04,384 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,385 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,387 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,389 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,391 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,393 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,395 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,397 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,400 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,402 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,404 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,405 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,408 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:04,411 creating build/lib/omicverse/llm/scfoundation 2026-07-26T01:58:04,412 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-07-26T01:58:04,414 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-07-26T01:58:04,416 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-07-26T01:58:04,418 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-07-26T01:58:04,421 creating build/lib/omicverse/llm/scgpt 2026-07-26T01:58:04,422 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-07-26T01:58:04,424 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-07-26T01:58:04,426 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-07-26T01:58:04,428 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-07-26T01:58:04,431 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-07-26T01:58:04,433 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-07-26T01:58:04,436 creating build/lib/omicverse/llm/utils 2026-07-26T01:58:04,437 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-07-26T01:58:04,439 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-07-26T01:58:04,441 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-07-26T01:58:04,444 creating build/lib/omicverse/llm/dr 2026-07-26T01:58:04,445 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-07-26T01:58:04,447 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-07-26T01:58:04,449 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-07-26T01:58:04,451 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-07-26T01:58:04,452 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-07-26T01:58:04,455 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-07-26T01:58:04,457 creating build/lib/omicverse/llm/CellPLM 2026-07-26T01:58:04,458 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-07-26T01:58:04,460 creating build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,461 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,464 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,466 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,468 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,471 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,474 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,478 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,481 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,484 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,489 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,492 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,495 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-07-26T01:58:04,499 creating build/lib/omicverse/llm/domain_research 2026-07-26T01:58:04,500 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-07-26T01:58:04,502 creating build/lib/omicverse/llm/UCE 2026-07-26T01:58:04,503 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-07-26T01:58:04,505 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-07-26T01:58:04,507 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-07-26T01:58:04,509 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-07-26T01:58:04,511 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-07-26T01:58:04,513 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-07-26T01:58:04,517 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:04,518 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:04,520 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:04,521 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:04,523 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:04,525 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:04,528 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:04,530 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:04,533 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-07-26T01:58:04,534 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-07-26T01:58:04,536 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-07-26T01:58:04,540 creating build/lib/omicverse/llm/scgpt/model 2026-07-26T01:58:04,541 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-07-26T01:58:04,543 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-07-26T01:58:04,545 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-07-26T01:58:04,548 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-07-26T01:58:04,551 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-07-26T01:58:04,553 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-07-26T01:58:04,556 creating build/lib/omicverse/llm/scgpt/utils 2026-07-26T01:58:04,557 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-07-26T01:58:04,559 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-07-26T01:58:04,562 creating build/lib/omicverse/llm/scgpt/scbank 2026-07-26T01:58:04,563 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-07-26T01:58:04,565 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-07-26T01:58:04,567 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-07-26T01:58:04,570 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-07-26T01:58:04,571 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-07-26T01:58:04,574 creating build/lib/omicverse/llm/scgpt/tasks 2026-07-26T01:58:04,575 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-07-26T01:58:04,577 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-07-26T01:58:04,579 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-07-26T01:58:04,582 creating build/lib/omicverse/llm/dr/verify 2026-07-26T01:58:04,583 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-07-26T01:58:04,586 creating build/lib/omicverse/llm/dr/scope 2026-07-26T01:58:04,587 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-07-26T01:58:04,589 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-07-26T01:58:04,591 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-07-26T01:58:04,593 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-07-26T01:58:04,594 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-07-26T01:58:04,597 creating build/lib/omicverse/llm/dr/write 2026-07-26T01:58:04,598 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-07-26T01:58:04,600 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-07-26T01:58:04,602 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-07-26T01:58:04,605 creating build/lib/omicverse/llm/dr/retrievers 2026-07-26T01:58:04,606 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-07-26T01:58:04,609 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-07-26T01:58:04,612 creating build/lib/omicverse/llm/dr/research 2026-07-26T01:58:04,613 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-07-26T01:58:04,615 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-07-26T01:58:04,617 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-07-26T01:58:04,619 creating build/lib/omicverse/llm/CellPLM/objective 2026-07-26T01:58:04,620 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-07-26T01:58:04,622 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-07-26T01:58:04,624 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-07-26T01:58:04,626 creating build/lib/omicverse/llm/CellPLM/decoder 2026-07-26T01:58:04,627 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-07-26T01:58:04,629 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-07-26T01:58:04,846 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-07-26T01:58:04,849 creating build/lib/omicverse/llm/CellPLM/model 2026-07-26T01:58:04,850 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-07-26T01:58:04,852 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-07-26T01:58:04,856 creating build/lib/omicverse/llm/CellPLM/utils 2026-07-26T01:58:04,857 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-07-26T01:58:04,860 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-07-26T01:58:04,863 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-07-26T01:58:04,866 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-07-26T01:58:04,868 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-07-26T01:58:04,871 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-07-26T01:58:04,875 creating build/lib/omicverse/llm/CellPLM/head 2026-07-26T01:58:04,876 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-07-26T01:58:04,879 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-07-26T01:58:04,882 creating build/lib/omicverse/llm/CellPLM/layer 2026-07-26T01:58:04,884 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-07-26T01:58:04,887 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-07-26T01:58:04,889 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-07-26T01:58:04,893 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-07-26T01:58:04,896 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-07-26T01:58:04,900 creating build/lib/omicverse/llm/CellPLM/embedder 2026-07-26T01:58:04,902 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-07-26T01:58:04,905 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-07-26T01:58:04,908 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:04,910 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:04,913 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:04,916 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:04,920 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:04,923 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:04,927 creating build/lib/omicverse/llm/CellPLM/encoder 2026-07-26T01:58:04,929 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-07-26T01:58:04,931 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-07-26T01:58:04,934 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-07-26T01:58:04,937 creating build/lib/omicverse/llm/CellPLM/latent 2026-07-26T01:58:04,939 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-07-26T01:58:04,942 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-07-26T01:58:04,944 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-07-26T01:58:04,948 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-07-26T01:58:04,952 creating build/lib/omicverse/llm/geneformer/mtl 2026-07-26T01:58:04,953 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-07-26T01:58:04,956 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-07-26T01:58:04,959 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-07-26T01:58:04,962 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-07-26T01:58:04,966 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-07-26T01:58:04,969 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-07-26T01:58:04,973 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-07-26T01:58:04,977 creating build/lib/omicverse/llm/domain_research/write 2026-07-26T01:58:04,978 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-07-26T01:58:04,982 creating build/lib/omicverse/llm/domain_research/retrievers 2026-07-26T01:58:04,983 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-07-26T01:58:04,987 creating build/lib/omicverse/llm/UCE/data_proc 2026-07-26T01:58:04,988 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-07-26T01:58:04,990 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-07-26T01:58:04,993 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-07-26T01:58:04,995 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-07-26T01:58:04,998 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-07-26T01:58:05,001 creating build/lib/omicverse/utils/harness 2026-07-26T01:58:05,002 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-07-26T01:58:05,005 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-07-26T01:58:05,007 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-07-26T01:58:05,010 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-07-26T01:58:05,013 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-07-26T01:58:05,015 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-07-26T01:58:05,018 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-07-26T01:58:05,021 creating build/lib/omicverse/utils/biocontext 2026-07-26T01:58:05,022 copying omicverse/utils/biocontext/__init__.py -> build/lib/omicverse/utils/biocontext 2026-07-26T01:58:05,024 copying omicverse/utils/biocontext/_client.py -> build/lib/omicverse/utils/biocontext 2026-07-26T01:58:05,026 copying omicverse/utils/biocontext/_tools.py -> build/lib/omicverse/utils/biocontext 2026-07-26T01:58:05,030 creating build/lib/omicverse/utils/verifier 2026-07-26T01:58:05,031 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-07-26T01:58:05,033 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-07-26T01:58:05,035 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-07-26T01:58:05,038 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-07-26T01:58:05,040 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-07-26T01:58:05,043 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-07-26T01:58:05,046 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-07-26T01:58:05,048 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-07-26T01:58:05,050 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-07-26T01:58:05,053 creating build/lib/omicverse/utils/gpuex 2026-07-26T01:58:05,054 copying omicverse/utils/gpuex/__init__.py -> build/lib/omicverse/utils/gpuex 2026-07-26T01:58:05,056 copying omicverse/utils/gpuex/scipy.py -> build/lib/omicverse/utils/gpuex 2026-07-26T01:58:05,059 creating build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,060 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,063 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,066 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,068 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,071 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,073 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,076 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,079 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,081 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,084 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,087 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,090 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,093 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-07-26T01:58:05,097 creating build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,098 copying omicverse/utils/ovagent/repair_loop.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,102 copying omicverse/utils/ovagent/turn_followup.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,106 copying omicverse/utils/ovagent/context_budget.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,111 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,113 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,115 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,118 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,120 copying omicverse/utils/ovagent/analysis_transformer.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,122 copying omicverse/utils/ovagent/permission_policy.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,124 copying omicverse/utils/ovagent/session_facade.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,127 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,129 copying omicverse/utils/ovagent/tool_runtime_workspace.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,132 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,134 copying omicverse/utils/ovagent/codegen_tool_facade.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,136 copying omicverse/utils/ovagent/tool_runtime_exec.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,139 copying omicverse/utils/ovagent/tool_registry.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,141 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,144 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,147 copying omicverse/utils/ovagent/turn_artifacts.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,150 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,156 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,158 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,161 copying omicverse/utils/ovagent/tool_scheduler.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,163 copying omicverse/utils/ovagent/analysis_sandbox.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,166 copying omicverse/utils/ovagent/tool_runtime_web.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,168 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,170 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,173 copying omicverse/utils/ovagent/prompt_templates.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,175 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,178 copying omicverse/utils/ovagent/tool_runtime_io.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,180 copying omicverse/utils/ovagent/event_stream.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,182 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,185 copying omicverse/utils/ovagent/analysis_diagnostics.py -> build/lib/omicverse/utils/ovagent 2026-07-26T01:58:05,188 creating build/lib/omicverse/utils/gpuex/umap 2026-07-26T01:58:05,189 copying omicverse/utils/gpuex/umap/_sgd_mlx.py -> build/lib/omicverse/utils/gpuex/umap 2026-07-26T01:58:05,192 copying omicverse/utils/gpuex/umap/_embedding.py -> build/lib/omicverse/utils/gpuex/umap 2026-07-26T01:58:05,194 copying omicverse/utils/gpuex/umap/__init__.py -> build/lib/omicverse/utils/gpuex/umap 2026-07-26T01:58:05,196 copying omicverse/utils/gpuex/umap/_init.py -> build/lib/omicverse/utils/gpuex/umap 2026-07-26T01:58:05,199 copying omicverse/utils/gpuex/umap/_sgd.py -> build/lib/omicverse/utils/gpuex/umap 2026-07-26T01:58:05,201 copying omicverse/utils/gpuex/umap/_ab.py -> build/lib/omicverse/utils/gpuex/umap 2026-07-26T01:58:05,204 creating build/lib/omicverse/jarvis/channels 2026-07-26T01:58:05,205 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-07-26T01:58:05,208 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-07-26T01:58:05,210 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-07-26T01:58:05,214 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-07-26T01:58:05,217 copying omicverse/jarvis/channels/channel_core.py -> build/lib/omicverse/jarvis/channels 2026-07-26T01:58:05,219 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-07-26T01:58:05,222 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-07-26T01:58:05,225 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-07-26T01:58:05,229 creating build/lib/omicverse/jarvis/gateway 2026-07-26T01:58:05,230 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-07-26T01:58:05,232 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-07-26T01:58:05,234 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-07-26T01:58:05,237 creating build/lib/omicverse/jarvis/runtime 2026-07-26T01:58:05,238 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-07-26T01:58:05,241 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-07-26T01:58:05,242 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-07-26T01:58:05,244 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-07-26T01:58:05,246 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-07-26T01:58:05,248 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-07-26T01:58:05,250 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-07-26T01:58:05,252 creating build/lib/omicverse/jarvis/memory 2026-07-26T01:58:05,253 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-07-26T01:58:05,255 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-07-26T01:58:05,258 creating build/lib/omicverse/datasets/data_files 2026-07-26T01:58:05,259 copying omicverse/datasets/data_files/smoothDatakNN.py -> build/lib/omicverse/datasets/data_files 2026-07-26T01:58:05,263 creating build/lib/omicverse/single/ev 2026-07-26T01:58:05,264 copying omicverse/single/ev/_cluster.py -> build/lib/omicverse/single/ev 2026-07-26T01:58:05,266 copying omicverse/single/ev/_pseudobulk.py -> build/lib/omicverse/single/ev 2026-07-26T01:58:05,268 copying omicverse/single/ev/_annotate.py -> build/lib/omicverse/single/ev 2026-07-26T01:58:05,271 copying omicverse/single/ev/__init__.py -> build/lib/omicverse/single/ev 2026-07-26T01:58:05,273 copying omicverse/single/ev/io.py -> build/lib/omicverse/single/ev 2026-07-26T01:58:05,276 copying omicverse/single/ev/_coloc.py -> build/lib/omicverse/single/ev 2026-07-26T01:58:05,280 copying omicverse/single/ev/_markers.py -> build/lib/omicverse/single/ev 2026-07-26T01:58:05,283 copying omicverse/single/ev/_preprocess.py -> build/lib/omicverse/single/ev 2026-07-26T01:58:05,285 copying omicverse/single/ev/_report.py -> build/lib/omicverse/single/ev 2026-07-26T01:58:05,288 copying omicverse/single/ev/plotting.py -> build/lib/omicverse/single/ev 2026-07-26T01:58:05,290 copying omicverse/single/ev/_qc.py -> build/lib/omicverse/single/ev 2026-07-26T01:58:05,293 creating build/lib/omicverse/single/_metacell_backends 2026-07-26T01:58:05,294 copying omicverse/single/_metacell_backends/kmeans_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-07-26T01:58:05,297 copying omicverse/single/_metacell_backends/__init__.py -> build/lib/omicverse/single/_metacell_backends 2026-07-26T01:58:05,299 copying omicverse/single/_metacell_backends/geosketch_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-07-26T01:58:05,302 copying omicverse/single/_metacell_backends/base.py -> build/lib/omicverse/single/_metacell_backends 2026-07-26T01:58:05,304 copying omicverse/single/_metacell_backends/seacells_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-07-26T01:58:05,307 copying omicverse/single/_metacell_backends/mc2_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-07-26T01:58:05,309 copying omicverse/single/_metacell_backends/supercell_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-07-26T01:58:05,311 copying omicverse/single/_metacell_backends/metaq_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-07-26T01:58:05,314 copying omicverse/single/_metacell_backends/random_backend.py -> build/lib/omicverse/single/_metacell_backends 2026-07-26T01:58:05,316 creating build/lib/omicverse/single/templates 2026-07-26T01:58:05,318 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-07-26T01:58:05,320 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-07-26T01:58:05,323 creating build/lib/omicverse/mcp/adapters 2026-07-26T01:58:05,325 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-07-26T01:58:05,327 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-07-26T01:58:05,329 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-07-26T01:58:05,332 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-07-26T01:58:05,335 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-07-26T01:58:05,338 creating build/lib/omicverse/pl/_data 2026-07-26T01:58:05,339 copying omicverse/pl/_data/generate_centromeres.py -> build/lib/omicverse/pl/_data 2026-07-26T01:58:05,343 creating build/lib/omicverse/bulk/_alignment 2026-07-26T01:58:05,344 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-07-26T01:58:05,347 creating build/lib/omicverse/io/single 2026-07-26T01:58:05,348 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-07-26T01:58:05,351 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-07-26T01:58:05,353 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-07-26T01:58:05,356 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-07-26T01:58:05,360 creating build/lib/omicverse/io/spatial 2026-07-26T01:58:05,361 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-07-26T01:58:05,364 copying omicverse/io/spatial/_atera.py -> build/lib/omicverse/io/spatial 2026-07-26T01:58:05,367 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-07-26T01:58:05,369 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-07-26T01:58:05,372 copying omicverse/io/spatial/_xenium.py -> build/lib/omicverse/io/spatial 2026-07-26T01:58:05,376 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-07-26T01:58:05,379 creating build/lib/omicverse/io/general 2026-07-26T01:58:05,380 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-07-26T01:58:05,382 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-07-26T01:58:05,385 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-07-26T01:58:05,388 creating build/lib/omicverse/io/bulk 2026-07-26T01:58:05,390 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-07-26T01:58:05,394 running egg_info 2026-07-26T01:58:05,405 writing omicverse.egg-info/PKG-INFO 2026-07-26T01:58:05,449 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-07-26T01:58:05,451 writing entry points to omicverse.egg-info/entry_points.txt 2026-07-26T01:58:05,487 writing requirements to omicverse.egg-info/requires.txt 2026-07-26T01:58:05,489 writing top-level names to omicverse.egg-info/top_level.txt 2026-07-26T01:58:05,740 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-07-26T01:58:05,843 reading manifest template 'MANIFEST.in' 2026-07-26T01:58:07,482 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-07-26T01:58:09,356 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-07-26T01:58:09,959 warning: no files found matching '*.yml' under directory 'omicverse' 2026-07-26T01:58:15,524 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-07-26T01:58:16,149 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-07-26T01:58:16,773 warning: no files found matching '*.svg' under directory 'omicverse' 2026-07-26T01:58:17,416 warning: no files found matching '*.ico' under directory 'omicverse' 2026-07-26T01:58:18,053 warning: no files found matching '*.db' under directory 'omicverse' 2026-07-26T01:58:18,659 warning: no files found matching '*.npz' under directory 'omicverse' 2026-07-26T01:58:19,279 warning: no files found matching '*.gz' under directory 'omicverse' 2026-07-26T01:58:20,755 no previously-included directories found matching '.git' 2026-07-26T01:58:20,763 no previously-included directories found matching '.github' 2026-07-26T01:58:20,771 no previously-included directories found matching '.claude' 2026-07-26T01:58:20,779 no previously-included directories found matching '.pytest_cache' 2026-07-26T01:58:20,788 no previously-included directories found matching '.ruff_cache' 2026-07-26T01:58:20,796 no previously-included directories found matching '.vscode' 2026-07-26T01:58:20,804 no previously-included directories found matching 'docs' 2026-07-26T01:58:20,812 no previously-included directories found matching 'tests' 2026-07-26T01:58:20,820 no previously-included directories found matching 'OvIntelligence' 2026-07-26T01:58:20,828 no previously-included directories found matching 'READMEM' 2026-07-26T01:58:20,837 no previously-included directories found matching 'omicverse_guide' 2026-07-26T01:58:20,845 no previously-included directories found matching 'omicverse_web' 2026-07-26T01:58:20,853 no previously-included directories found matching 'tmp' 2026-07-26T01:58:20,861 no previously-included directories found matching 'tmp_omicverse' 2026-07-26T01:58:20,869 no previously-included directories found matching 'Skill_Seekers' 2026-07-26T01:58:20,882 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-07-26T01:58:20,897 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-07-26T01:58:20,910 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-07-26T01:58:20,910 adding license file 'LICENSE' 2026-07-26T01:58:21,014 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-07-26T01:58:21,146 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-07-26T01:58:21,148 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-07-26T01:58:21,151 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-07-26T01:58:21,153 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-07-26T01:58:21,156 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-07-26T01:58:21,158 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-07-26T01:58:21,161 copying omicverse/pl/_data/centromere_hg19.csv -> build/lib/omicverse/pl/_data 2026-07-26T01:58:21,163 copying omicverse/pl/_data/centromere_hg38.csv -> build/lib/omicverse/pl/_data 2026-07-26T01:58:21,166 copying omicverse/pl/_data/centromere_mm10.csv -> build/lib/omicverse/pl/_data 2026-07-26T01:58:21,168 creating build/lib/omicverse/synbio/external 2026-07-26T01:58:21,169 copying omicverse/synbio/external/ec_reference.fasta -> build/lib/omicverse/synbio/external 2026-07-26T01:58:21,171 creating build/lib/omicverse/synbio/external/cfd 2026-07-26T01:58:21,173 copying omicverse/synbio/external/cfd/pam_scores.pkl -> build/lib/omicverse/synbio/external/cfd 2026-07-26T01:58:21,175 copying omicverse/synbio/external/cfd/mismatch_score.pkl -> build/lib/omicverse/synbio/external/cfd 2026-07-26T01:58:21,178 copying omicverse/external/saturn/requirements.txt -> build/lib/omicverse/external/saturn 2026-07-26T01:58:21,180 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-07-26T01:58:21,182 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-07-26T01:58:21,185 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-07-26T01:58:21,187 copying omicverse/external/istar/NOTICE.md -> build/lib/omicverse/external/istar 2026-07-26T01:58:21,189 copying omicverse/external/istar/README.md -> build/lib/omicverse/external/istar 2026-07-26T01:58:21,192 copying omicverse/external/istar/requirements.txt -> build/lib/omicverse/external/istar 2026-07-26T01:58:21,194 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-07-26T01:58:21,196 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-07-26T01:58:21,198 creating build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,199 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,202 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,205 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,208 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,211 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,214 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,217 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,220 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,223 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,226 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,228 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,232 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-07-26T01:58:21,236 creating build/lib/omicverse/external/scfea/data 2026-07-26T01:58:21,237 copying omicverse/external/scfea/data/Human_M168_information.symbols.csv -> build/lib/omicverse/external/scfea/data 2026-07-26T01:58:21,240 copying omicverse/external/scfea/data/cName_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-07-26T01:58:21,242 copying omicverse/external/scfea/data/cName_complete_mouse_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-07-26T01:58:21,244 copying omicverse/external/scfea/data/cmMat_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-07-26T01:58:21,248 copying omicverse/external/scfea/data/cmMat_complete_mouse_c70_m168.csv -> build/lib/omicverse/external/scfea/data 2026-07-26T01:58:21,251 copying omicverse/external/scfea/data/module_gene_complete_mouse_m168.csv -> build/lib/omicverse/external/scfea/data 2026-07-26T01:58:21,255 copying omicverse/external/scfea/data/module_gene_m168.csv -> build/lib/omicverse/external/scfea/data 2026-07-26T01:58:21,257 creating build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-07-26T01:58:21,260 copying omicverse/external/mebocost/data/mebocost_db/human/human_met_sensor_update_Oct21_2025.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-07-26T01:58:21,264 copying omicverse/external/mebocost/data/mebocost_db/human/metabolite_associated_gene_reaction_HMDB_summary.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/human 2026-07-26T01:58:21,287 creating build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-07-26T01:58:21,288 copying omicverse/external/mebocost/data/mebocost_db/common/hmdb_blood_metabolite_concentration.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-07-26T01:58:21,291 copying omicverse/external/mebocost/data/mebocost_db/common/human_mouse_homology_gene_pair.csv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-07-26T01:58:21,298 copying omicverse/external/mebocost/data/mebocost_db/common/metabolite_annotation_HMDB_summary.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/common 2026-07-26T01:58:21,321 creating build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-07-26T01:58:21,322 copying omicverse/external/mebocost/data/mebocost_db/mouse/metabolite_associated_gene_reaction_HMDB_summary_mouse.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-07-26T01:58:21,341 copying omicverse/external/mebocost/data/mebocost_db/mouse/mouse_met_sensor_update_Oct21_2025.tsv -> build/lib/omicverse/external/mebocost/data/mebocost_db/mouse 2026-07-26T01:58:21,346 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-07-26T01:58:21,347 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-07-26T01:58:21,354 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-07-26T01:58:21,362 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-07-26T01:58:21,370 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-07-26T01:58:21,371 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-07-26T01:58:21,393 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-07-26T01:58:21,411 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-07-26T01:58:21,430 creating build/lib/omicverse/external/gsmap/templates 2026-07-26T01:58:21,431 copying omicverse/external/gsmap/templates/report_template.html -> build/lib/omicverse/external/gsmap/templates 2026-07-26T01:58:21,434 copying omicverse/external/scMulan/utils/meta_info.pt -> build/lib/omicverse/external/scMulan/utils 2026-07-26T01:58:21,438 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-07-26T01:58:21,872 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-07-26T01:58:21,900 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-07-26T01:58:21,902 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-07-26T01:58:21,906 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-07-26T01:58:21,911 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-07-26T01:58:21,912 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-07-26T01:58:21,917 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-07-26T01:58:21,921 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-07-26T01:58:21,926 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-07-26T01:58:21,929 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-07-26T01:58:21,932 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-07-26T01:58:21,935 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-07-26T01:58:21,937 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:21,943 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-07-26T01:58:21,944 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-07-26T01:58:22,022 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-07-26T01:58:22,027 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-07-26T01:58:22,033 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-07-26T01:58:22,039 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-07-26T01:58:22,042 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-07-26T01:58:22,045 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-07-26T01:58:22,047 creating build/lib/omicverse/llm/scfoundation/models 2026-07-26T01:58:22,048 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-07-26T01:58:22,050 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-07-26T01:58:22,081 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-07-26T01:58:22,099 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-07-26T01:58:22,102 copying omicverse/datasets/data_files/README.md -> build/lib/omicverse/datasets/data_files 2026-07-26T01:58:22,105 copying omicverse/datasets/data_files/features_model_training_17.csv -> build/lib/omicverse/datasets/data_files 2026-07-26T01:58:22,110 copying omicverse/datasets/data_files/human_alias_list.txt -> build/lib/omicverse/datasets/data_files 2026-07-26T01:58:22,112 copying omicverse/datasets/data_files/mart_export.txt -> build/lib/omicverse/datasets/data_files 2026-07-26T01:58:22,192 creating build/lib/omicverse/datasets/data_files/TF 2026-07-26T01:58:22,193 copying omicverse/datasets/data_files/TF/allTFs_human.txt -> build/lib/omicverse/datasets/data_files/TF 2026-07-26T01:58:22,196 copying omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/datasets/data_files/TF 2026-07-26T01:58:22,199 copying omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/datasets/data_files/TF 2026-07-26T01:58:22,209 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/datasets/data_files/TF 2026-07-26T01:58:22,225 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/datasets/data_files/TF 2026-07-26T01:58:22,236 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-07-26T01:58:22,239 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-07-26T01:58:22,241 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-07-26T01:58:22,244 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-07-26T01:58:22,247 creating build/lib/omicverse/single/templates/img 2026-07-26T01:58:22,247 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-07-26T01:58:22,250 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-07-26T01:58:22,252 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-07-26T01:58:22,256 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-07-26T01:58:22,259 copying omicverse/pl/_data/README.md -> build/lib/omicverse/pl/_data 2026-07-26T01:58:22,397 installing to build/bdist.linux-armv7l/wheel 2026-07-26T01:58:22,398 running install 2026-07-26T01:58:22,419 running install_lib 2026-07-26T01:58:22,425 creating build/bdist.linux-armv7l/wheel 2026-07-26T01:58:22,428 creating build/bdist.linux-armv7l/wheel/omicverse 2026-07-26T01:58:22,430 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-07-26T01:58:22,431 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,435 creating build/bdist.linux-armv7l/wheel/omicverse/space/histo 2026-07-26T01:58:22,436 copying build/lib/omicverse/space/histo/_stpath.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-07-26T01:58:22,438 copying build/lib/omicverse/space/histo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-07-26T01:58:22,440 copying build/lib/omicverse/space/histo/_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-07-26T01:58:22,443 copying build/lib/omicverse/space/histo/_stflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-07-26T01:58:22,446 copying build/lib/omicverse/space/histo/_istar.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-07-26T01:58:22,448 copying build/lib/omicverse/space/histo/_demo.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-07-26T01:58:22,450 copying build/lib/omicverse/space/histo/_dispatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-07-26T01:58:22,453 copying build/lib/omicverse/space/histo/_embed.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-07-26T01:58:22,455 copying build/lib/omicverse/space/histo/_hest_fm.py -> build/bdist.linux-armv7l/wheel/./omicverse/space/histo 2026-07-26T01:58:22,458 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,461 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,463 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,466 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,469 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,471 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,473 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,476 copying build/lib/omicverse/space/_tissue_zones.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,478 copying build/lib/omicverse/space/_cellcharter.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,480 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,482 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,484 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,487 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,489 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,492 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,495 copying build/lib/omicverse/space/_split.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-07-26T01:58:22,497 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-07-26T01:58:22,500 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-07-26T01:58:22,503 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-07-26T01:58:22,504 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,507 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,510 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,513 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,516 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,518 copying build/lib/omicverse/pp/_tsne_cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,520 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-07-26T01:58:22,521 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-07-26T01:58:22,523 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-07-26T01:58:22,525 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-07-26T01:58:22,528 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,530 copying build/lib/omicverse/pp/_scdblfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,532 copying build/lib/omicverse/pp/_leiden_gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,536 creating build/bdist.linux-armv7l/wheel/omicverse/pp/ambient 2026-07-26T01:58:22,537 copying build/lib/omicverse/pp/ambient/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-07-26T01:58:22,539 copying build/lib/omicverse/pp/ambient/_diagnostics.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-07-26T01:58:22,541 copying build/lib/omicverse/pp/ambient/_ambient.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-07-26T01:58:22,544 copying build/lib/omicverse/pp/ambient/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/ambient 2026-07-26T01:58:22,546 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,548 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,558 copying build/lib/omicverse/pp/_gpu_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,560 creating build/bdist.linux-armv7l/wheel/omicverse/pp/_scrublet_backend 2026-07-26T01:58:22,561 copying build/lib/omicverse/pp/_scrublet_backend/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-07-26T01:58:22,564 copying build/lib/omicverse/pp/_scrublet_backend/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-07-26T01:58:22,566 copying build/lib/omicverse/pp/_scrublet_backend/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-07-26T01:58:22,568 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,570 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,574 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,576 copying build/lib/omicverse/pp/_champ.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,579 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,581 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,583 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,587 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,590 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,592 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,595 copying build/lib/omicverse/pp/_doubletfinder.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,598 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,600 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,602 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,605 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-07-26T01:58:22,610 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-07-26T01:58:22,611 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,613 copying build/lib/omicverse/alignment/simpleaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,616 copying build/lib/omicverse/alignment/amplicon_16s.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,618 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,620 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,623 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,626 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,628 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,630 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,632 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,634 copying build/lib/omicverse/alignment/dada2.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,637 copying build/lib/omicverse/alignment/mafft.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,639 copying build/lib/omicverse/alignment/vsearch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,642 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,644 copying build/lib/omicverse/alignment/cutadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,646 copying build/lib/omicverse/alignment/_db.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,648 copying build/lib/omicverse/alignment/fasttree.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,650 copying build/lib/omicverse/alignment/phylogeny.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-07-26T01:58:22,652 copying build/lib/omicverse/_optional.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-07-26T01:58:22,655 creating build/bdist.linux-armv7l/wheel/omicverse/airr 2026-07-26T01:58:22,656 copying build/lib/omicverse/airr/_tcr.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-07-26T01:58:22,659 copying build/lib/omicverse/airr/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-07-26T01:58:22,662 copying build/lib/omicverse/airr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-07-26T01:58:22,665 copying build/lib/omicverse/airr/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-07-26T01:58:22,667 copying build/lib/omicverse/airr/_clonotype.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-07-26T01:58:22,670 copying build/lib/omicverse/airr/_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-07-26T01:58:22,672 copying build/lib/omicverse/airr/_bcr.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-07-26T01:58:22,676 copying build/lib/omicverse/airr/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-07-26T01:58:22,678 copying build/lib/omicverse/airr/_tcr_gex.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-07-26T01:58:22,681 copying build/lib/omicverse/airr/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/airr 2026-07-26T01:58:22,684 creating build/bdist.linux-armv7l/wheel/omicverse/micro 2026-07-26T01:58:22,685 copying build/lib/omicverse/micro/_da.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-07-26T01:58:22,688 copying build/lib/omicverse/micro/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-07-26T01:58:22,689 copying build/lib/omicverse/micro/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-07-26T01:58:22,691 copying build/lib/omicverse/micro/_phylo.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-07-26T01:58:22,693 copying build/lib/omicverse/micro/_ord.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-07-26T01:58:22,695 copying build/lib/omicverse/micro/_pp.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-07-26T01:58:22,698 copying build/lib/omicverse/micro/_pair.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-07-26T01:58:22,701 copying build/lib/omicverse/micro/_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-07-26T01:58:22,704 copying build/lib/omicverse/micro/_meta.py -> build/bdist.linux-armv7l/wheel/./omicverse/micro 2026-07-26T01:58:22,707 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-07-26T01:58:22,711 creating build/bdist.linux-armv7l/wheel/omicverse/genetics 2026-07-26T01:58:22,713 copying build/lib/omicverse/genetics/_mr.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,716 copying build/lib/omicverse/genetics/_simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,719 copying build/lib/omicverse/genetics/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,722 copying build/lib/omicverse/genetics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,725 copying build/lib/omicverse/genetics/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,728 copying build/lib/omicverse/genetics/_eqtl.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,731 copying build/lib/omicverse/genetics/_scdrs.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,733 copying build/lib/omicverse/genetics/_finemap.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,736 copying build/lib/omicverse/genetics/_coloc.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,739 copying build/lib/omicverse/genetics/_gsmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,742 copying build/lib/omicverse/genetics/_gwas.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,744 copying build/lib/omicverse/genetics/_ldsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,747 copying build/lib/omicverse/genetics/_twas.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,749 copying build/lib/omicverse/genetics/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/genetics 2026-07-26T01:58:22,753 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-07-26T01:58:22,754 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-07-26T01:58:22,756 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-07-26T01:58:22,758 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-07-26T01:58:22,760 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-07-26T01:58:22,761 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-07-26T01:58:22,764 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-07-26T01:58:22,766 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-07-26T01:58:22,769 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-07-26T01:58:22,771 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-07-26T01:58:22,774 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-07-26T01:58:22,776 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-07-26T01:58:22,781 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-07-26T01:58:22,783 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-07-26T01:58:22,784 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-07-26T01:58:22,787 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-07-26T01:58:22,790 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-07-26T01:58:22,793 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-07-26T01:58:22,795 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-07-26T01:58:22,798 creating build/bdist.linux-armv7l/wheel/omicverse/external/camex 2026-07-26T01:58:22,799 copying build/lib/omicverse/external/camex/params.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/camex 2026-07-26T01:58:22,802 copying build/lib/omicverse/external/camex/train_untils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/camex 2026-07-26T01:58:22,805 copying build/lib/omicverse/external/camex/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/camex 2026-07-26T01:58:22,808 copying build/lib/omicverse/external/camex/preprocess_untils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/camex 2026-07-26T01:58:22,811 copying build/lib/omicverse/external/camex/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/camex 2026-07-26T01:58:22,813 copying build/lib/omicverse/external/camex/integration_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/camex 2026-07-26T01:58:22,815 copying build/lib/omicverse/external/camex/_run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/camex 2026-07-26T01:58:22,818 copying build/lib/omicverse/external/camex/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/camex 2026-07-26T01:58:22,821 copying build/lib/omicverse/external/camex/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/camex 2026-07-26T01:58:22,824 copying build/lib/omicverse/external/camex/layer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/camex 2026-07-26T01:58:22,826 copying build/lib/omicverse/external/camex/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/camex 2026-07-26T01:58:22,829 creating build/bdist.linux-armv7l/wheel/omicverse/external/monocle2_py 2026-07-26T01:58:22,830 copying build/lib/omicverse/external/monocle2_py/dimension_reduction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-07-26T01:58:22,832 copying build/lib/omicverse/external/monocle2_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-07-26T01:58:22,834 copying build/lib/omicverse/external/monocle2_py/ordering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-07-26T01:58:22,837 copying build/lib/omicverse/external/monocle2_py/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-07-26T01:58:22,839 copying build/lib/omicverse/external/monocle2_py/clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-07-26T01:58:22,841 copying build/lib/omicverse/external/monocle2_py/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-07-26T01:58:22,845 copying build/lib/omicverse/external/monocle2_py/ddrtree.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-07-26T01:58:22,847 copying build/lib/omicverse/external/monocle2_py/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-07-26T01:58:22,850 copying build/lib/omicverse/external/monocle2_py/differential.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/monocle2_py 2026-07-26T01:58:22,853 creating build/bdist.linux-armv7l/wheel/omicverse/external/saturn 2026-07-26T01:58:22,855 creating build/bdist.linux-armv7l/wheel/omicverse/external/saturn/data 2026-07-26T01:58:22,856 copying build/lib/omicverse/external/saturn/data/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/data 2026-07-26T01:58:22,858 copying build/lib/omicverse/external/saturn/data/multi_species_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/data 2026-07-26T01:58:22,860 copying build/lib/omicverse/external/saturn/data/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/data 2026-07-26T01:58:22,862 copying build/lib/omicverse/external/saturn/score_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn 2026-07-26T01:58:22,865 copying build/lib/omicverse/external/saturn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn 2026-07-26T01:58:22,867 copying build/lib/omicverse/external/saturn/pretrain_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn 2026-07-26T01:58:22,869 creating build/bdist.linux-armv7l/wheel/omicverse/external/saturn/model 2026-07-26T01:58:22,870 copying build/lib/omicverse/external/saturn/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/model 2026-07-26T01:58:22,872 copying build/lib/omicverse/external/saturn/model/saturn_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/model 2026-07-26T01:58:22,875 copying build/lib/omicverse/external/saturn/saturn_multiple_seeds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn 2026-07-26T01:58:22,878 creating build/bdist.linux-armv7l/wheel/omicverse/external/saturn/utils 2026-07-26T01:58:22,879 copying build/lib/omicverse/external/saturn/utils/transformations.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,881 copying build/lib/omicverse/external/saturn/utils/loss_tracker.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,883 copying build/lib/omicverse/external/saturn/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,884 copying build/lib/omicverse/external/saturn/utils/module_with_records_and_reducer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,886 copying build/lib/omicverse/external/saturn/utils/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,888 copying build/lib/omicverse/external/saturn/utils/distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,890 copying build/lib/omicverse/external/saturn/utils/loss_and_miner_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,893 copying build/lib/omicverse/external/saturn/utils/stop_conditions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,894 copying build/lib/omicverse/external/saturn/utils/stat_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,896 copying build/lib/omicverse/external/saturn/utils/accuracy_calculator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,899 copying build/lib/omicverse/external/saturn/utils/common_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,901 copying build/lib/omicverse/external/saturn/utils/module_with_records.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,903 copying build/lib/omicverse/external/saturn/utils/logging_presets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/utils 2026-07-26T01:58:22,905 copying build/lib/omicverse/external/saturn/requirements.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn 2026-07-26T01:58:22,908 creating build/bdist.linux-armv7l/wheel/omicverse/external/saturn/losses 2026-07-26T01:58:22,909 copying build/lib/omicverse/external/saturn/losses/mixins.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,911 copying build/lib/omicverse/external/saturn/losses/intra_pair_variance_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,913 copying build/lib/omicverse/external/saturn/losses/circle_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,915 copying build/lib/omicverse/external/saturn/losses/fast_ap_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,917 copying build/lib/omicverse/external/saturn/losses/ntxent_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,919 copying build/lib/omicverse/external/saturn/losses/contrastive_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,921 copying build/lib/omicverse/external/saturn/losses/base_metric_loss_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,923 copying build/lib/omicverse/external/saturn/losses/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,924 copying build/lib/omicverse/external/saturn/losses/signal_to_noise_ratio_losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,926 copying build/lib/omicverse/external/saturn/losses/triplet_margin_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,928 copying build/lib/omicverse/external/saturn/losses/cross_batch_memory.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,930 copying build/lib/omicverse/external/saturn/losses/cosface_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,932 copying build/lib/omicverse/external/saturn/losses/proxy_losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,934 copying build/lib/omicverse/external/saturn/losses/proxy_anchor_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,936 copying build/lib/omicverse/external/saturn/losses/tuplet_margin_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,937 copying build/lib/omicverse/external/saturn/losses/angular_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,939 copying build/lib/omicverse/external/saturn/losses/lifted_structure_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,941 copying build/lib/omicverse/external/saturn/losses/margin_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,943 copying build/lib/omicverse/external/saturn/losses/large_margin_softmax_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,945 copying build/lib/omicverse/external/saturn/losses/sphereface_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,947 copying build/lib/omicverse/external/saturn/losses/multi_similarity_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,949 copying build/lib/omicverse/external/saturn/losses/triplet_margin_mmd_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,951 copying build/lib/omicverse/external/saturn/losses/arcface_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,952 copying build/lib/omicverse/external/saturn/losses/nca_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,954 copying build/lib/omicverse/external/saturn/losses/n_pairs_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,956 copying build/lib/omicverse/external/saturn/losses/normalized_softmax_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,958 copying build/lib/omicverse/external/saturn/losses/generic_pair_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,960 copying build/lib/omicverse/external/saturn/losses/soft_triple_loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/losses 2026-07-26T01:58:22,962 copying build/lib/omicverse/external/saturn/_run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn 2026-07-26T01:58:22,965 creating build/bdist.linux-armv7l/wheel/omicverse/external/saturn/testers 2026-07-26T01:58:22,966 copying build/lib/omicverse/external/saturn/testers/global_embedding_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/testers 2026-07-26T01:58:22,968 copying build/lib/omicverse/external/saturn/testers/base_tester.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/testers 2026-07-26T01:58:22,971 copying build/lib/omicverse/external/saturn/testers/with_same_parent_label.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/testers 2026-07-26T01:58:22,972 copying build/lib/omicverse/external/saturn/testers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/testers 2026-07-26T01:58:22,974 copying build/lib/omicverse/external/saturn/testers/global_twostream_embedding_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/testers 2026-07-26T01:58:22,977 creating build/bdist.linux-armv7l/wheel/omicverse/external/saturn/reducers 2026-07-26T01:58:22,978 copying build/lib/omicverse/external/saturn/reducers/do_nothing_reducer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/reducers 2026-07-26T01:58:22,979 copying build/lib/omicverse/external/saturn/reducers/per_anchor_reducer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/reducers 2026-07-26T01:58:22,981 copying build/lib/omicverse/external/saturn/reducers/class_weighted_reducer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/reducers 2026-07-26T01:58:22,983 copying build/lib/omicverse/external/saturn/reducers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/reducers 2026-07-26T01:58:22,984 copying build/lib/omicverse/external/saturn/reducers/base_reducer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/reducers 2026-07-26T01:58:22,986 copying build/lib/omicverse/external/saturn/reducers/multiple_reducers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/reducers 2026-07-26T01:58:22,988 copying build/lib/omicverse/external/saturn/reducers/threshold_reducer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/reducers 2026-07-26T01:58:22,989 copying build/lib/omicverse/external/saturn/reducers/avg_non_zero_reducer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/reducers 2026-07-26T01:58:22,991 copying build/lib/omicverse/external/saturn/reducers/divisor_reducer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/reducers 2026-07-26T01:58:22,993 copying build/lib/omicverse/external/saturn/reducers/mean_reducer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/reducers 2026-07-26T01:58:22,995 copying build/lib/omicverse/external/saturn/_train_saturn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn 2026-07-26T01:58:22,998 creating build/bdist.linux-armv7l/wheel/omicverse/external/saturn/distances 2026-07-26T01:58:22,999 copying build/lib/omicverse/external/saturn/distances/snr_distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/distances 2026-07-26T01:58:23,001 copying build/lib/omicverse/external/saturn/distances/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/distances 2026-07-26T01:58:23,003 copying build/lib/omicverse/external/saturn/distances/lp_distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/distances 2026-07-26T01:58:23,004 copying build/lib/omicverse/external/saturn/distances/base_distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/distances 2026-07-26T01:58:23,006 copying build/lib/omicverse/external/saturn/distances/dot_product_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/distances 2026-07-26T01:58:23,008 copying build/lib/omicverse/external/saturn/distances/cosine_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/distances 2026-07-26T01:58:23,010 creating build/bdist.linux-armv7l/wheel/omicverse/external/saturn/miners 2026-07-26T01:58:23,011 copying build/lib/omicverse/external/saturn/miners/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,013 copying build/lib/omicverse/external/saturn/miners/maximum_loss_miner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,015 copying build/lib/omicverse/external/saturn/miners/base_miner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,017 copying build/lib/omicverse/external/saturn/miners/uniform_histogram_miner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,019 copying build/lib/omicverse/external/saturn/miners/batch_hard_miner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,021 copying build/lib/omicverse/external/saturn/miners/hdc_miner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,022 copying build/lib/omicverse/external/saturn/miners/batch_easy_hard_miner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,025 copying build/lib/omicverse/external/saturn/miners/angular_miner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,027 copying build/lib/omicverse/external/saturn/miners/multi_similarity_miner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,028 copying build/lib/omicverse/external/saturn/miners/triplet_margin_miner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,030 copying build/lib/omicverse/external/saturn/miners/pair_margin_miner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,032 copying build/lib/omicverse/external/saturn/miners/embeddings_already_packaged_as_triplets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,033 copying build/lib/omicverse/external/saturn/miners/distance_weighted_miner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/saturn/miners 2026-07-26T01:58:23,036 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-07-26T01:58:23,037 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-07-26T01:58:23,039 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-07-26T01:58:23,041 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-07-26T01:58:23,044 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-07-26T01:58:23,045 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-07-26T01:58:23,047 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-07-26T01:58:23,048 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-07-26T01:58:23,051 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-07-26T01:58:23,052 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-07-26T01:58:23,055 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-07-26T01:58:23,057 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-07-26T01:58:23,058 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-07-26T01:58:23,061 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-07-26T01:58:23,064 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-07-26T01:58:23,067 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-07-26T01:58:23,068 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-07-26T01:58:23,071 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-07-26T01:58:23,072 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-07-26T01:58:23,075 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-07-26T01:58:23,077 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-07-26T01:58:23,078 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-07-26T01:58:23,081 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-07-26T01:58:23,083 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-07-26T01:58:23,086 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-07-26T01:58:23,087 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-07-26T01:58:23,089 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-07-26T01:58:23,091 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-07-26T01:58:23,094 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-07-26T01:58:23,095 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-07-26T01:58:23,098 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-07-26T01:58:23,100 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-07-26T01:58:23,102 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-07-26T01:58:23,104 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-07-26T01:58:23,106 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-07-26T01:58:23,108 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-07-26T01:58:23,111 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-07-26T01:58:23,112 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-07-26T01:58:23,115 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-07-26T01:58:23,117 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-07-26T01:58:23,118 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-07-26T01:58:23,120 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-07-26T01:58:23,122 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-07-26T01:58:23,124 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-07-26T01:58:23,125 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-07-26T01:58:23,128 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-07-26T01:58:23,130 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-07-26T01:58:23,132 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-07-26T01:58:23,134 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-07-26T01:58:23,136 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-07-26T01:58:23,138 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-07-26T01:58:23,141 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-07-26T01:58:23,143 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-07-26T01:58:23,144 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-07-26T01:58:23,146 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-07-26T01:58:23,148 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-07-26T01:58:23,151 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-07-26T01:58:23,152 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-07-26T01:58:23,155 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-07-26T01:58:23,158 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-07-26T01:58:23,159 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-07-26T01:58:23,161 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-07-26T01:58:23,163 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-07-26T01:58:23,165 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-07-26T01:58:23,168 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-07-26T01:58:23,169 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-07-26T01:58:23,171 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-07-26T01:58:23,173 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-07-26T01:58:23,175 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-07-26T01:58:23,178 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-07-26T01:58:23,180 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-07-26T01:58:23,183 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-07-26T01:58:23,185 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-07-26T01:58:23,188 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-07-26T01:58:23,191 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyensembl 2026-07-26T01:58:23,192 copying build/lib/omicverse/external/pyensembl/ensembl_versions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,194 copying build/lib/omicverse/external/pyensembl/locus.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,196 copying build/lib/omicverse/external/pyensembl/shell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,199 copying build/lib/omicverse/external/pyensembl/download_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,201 copying build/lib/omicverse/external/pyensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,203 copying build/lib/omicverse/external/pyensembl/sequence_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,205 copying build/lib/omicverse/external/pyensembl/reference_name.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,207 copying build/lib/omicverse/external/pyensembl/common.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,209 copying build/lib/omicverse/external/pyensembl/transcript.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,212 copying build/lib/omicverse/external/pyensembl/search.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,214 copying build/lib/omicverse/external/pyensembl/locus_with_genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,215 copying build/lib/omicverse/external/pyensembl/exon.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,217 copying build/lib/omicverse/external/pyensembl/normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,219 copying build/lib/omicverse/external/pyensembl/ensembl_release.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,222 copying build/lib/omicverse/external/pyensembl/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,224 copying build/lib/omicverse/external/pyensembl/genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,227 copying build/lib/omicverse/external/pyensembl/fasta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,229 copying build/lib/omicverse/external/pyensembl/serializable.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,231 copying build/lib/omicverse/external/pyensembl/ensembl_url_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,234 copying build/lib/omicverse/external/pyensembl/species.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,236 copying build/lib/omicverse/external/pyensembl/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,237 copying build/lib/omicverse/external/pyensembl/gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-07-26T01:58:23,240 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-07-26T01:58:23,241 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-07-26T01:58:23,242 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-07-26T01:58:23,245 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-07-26T01:58:23,247 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-07-26T01:58:23,249 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-07-26T01:58:23,252 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-07-26T01:58:23,254 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-07-26T01:58:23,257 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-07-26T01:58:23,258 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-07-26T01:58:23,260 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-07-26T01:58:23,262 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-07-26T01:58:23,264 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-07-26T01:58:23,267 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyedger 2026-07-26T01:58:23,268 copying build/lib/omicverse/external/pyedger/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyedger 2026-07-26T01:58:23,270 copying build/lib/omicverse/external/pyedger/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyedger 2026-07-26T01:58:23,274 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold 2026-07-26T01:58:23,275 copying build/lib/omicverse/external/scTenifold/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold 2026-07-26T01:58:23,278 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/plotting 2026-07-26T01:58:23,279 copying build/lib/omicverse/external/scTenifold/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-07-26T01:58:23,281 copying build/lib/omicverse/external/scTenifold/plotting/_dim_reduction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-07-26T01:58:23,283 copying build/lib/omicverse/external/scTenifold/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/plotting 2026-07-26T01:58:23,286 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/core 2026-07-26T01:58:23,287 copying build/lib/omicverse/external/scTenifold/core/_ko.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-07-26T01:58:23,289 copying build/lib/omicverse/external/scTenifold/core/_QC.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-07-26T01:58:23,291 copying build/lib/omicverse/external/scTenifold/core/_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-07-26T01:58:23,292 copying build/lib/omicverse/external/scTenifold/core/_decomposition.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-07-26T01:58:23,294 copying build/lib/omicverse/external/scTenifold/core/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-07-26T01:58:23,296 copying build/lib/omicverse/external/scTenifold/core/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-07-26T01:58:23,298 copying build/lib/omicverse/external/scTenifold/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-07-26T01:58:23,300 copying build/lib/omicverse/external/scTenifold/core/_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-07-26T01:58:23,302 copying build/lib/omicverse/external/scTenifold/core/_base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-07-26T01:58:23,305 copying build/lib/omicverse/external/scTenifold/core/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/core 2026-07-26T01:58:23,307 copying build/lib/omicverse/external/scTenifold/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold 2026-07-26T01:58:23,309 creating build/bdist.linux-armv7l/wheel/omicverse/external/scTenifold/cell_cycle 2026-07-26T01:58:23,310 copying build/lib/omicverse/external/scTenifold/cell_cycle/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-07-26T01:58:23,312 copying build/lib/omicverse/external/scTenifold/cell_cycle/scoring.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-07-26T01:58:23,314 copying build/lib/omicverse/external/scTenifold/cell_cycle/UCell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scTenifold/cell_cycle 2026-07-26T01:58:23,317 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-07-26T01:58:23,318 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-07-26T01:58:23,320 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-07-26T01:58:23,322 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-07-26T01:58:23,325 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-07-26T01:58:23,326 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-07-26T01:58:23,329 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-07-26T01:58:23,331 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-07-26T01:58:23,333 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-07-26T01:58:23,335 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-07-26T01:58:23,338 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-07-26T01:58:23,340 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-07-26T01:58:23,342 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-07-26T01:58:23,345 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-07-26T01:58:23,346 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-07-26T01:58:23,348 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-07-26T01:58:23,350 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-07-26T01:58:23,353 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-07-26T01:58:23,354 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-07-26T01:58:23,356 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-07-26T01:58:23,357 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-07-26T01:58:23,360 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-07-26T01:58:23,362 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-07-26T01:58:23,364 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-07-26T01:58:23,366 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-07-26T01:58:23,368 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-07-26T01:58:23,369 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-07-26T01:58:23,371 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-07-26T01:58:23,373 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-07-26T01:58:23,375 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-07-26T01:58:23,377 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-07-26T01:58:23,379 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-07-26T01:58:23,380 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-07-26T01:58:23,383 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-07-26T01:58:23,384 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-07-26T01:58:23,387 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-07-26T01:58:23,389 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-07-26T01:58:23,391 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-07-26T01:58:23,394 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-07-26T01:58:23,396 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-07-26T01:58:23,398 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-07-26T01:58:23,400 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-07-26T01:58:23,403 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-07-26T01:58:23,404 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-07-26T01:58:23,407 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-07-26T01:58:23,408 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-07-26T01:58:23,410 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-07-26T01:58:23,413 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-07-26T01:58:23,415 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-07-26T01:58:23,417 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-07-26T01:58:23,419 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-07-26T01:58:23,421 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-07-26T01:58:23,424 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-07-26T01:58:23,427 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-07-26T01:58:23,428 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,431 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,433 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,435 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,437 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,440 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,442 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,445 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,447 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,450 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-07-26T01:58:23,451 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-07-26T01:58:23,454 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-07-26T01:58:23,456 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-07-26T01:58:23,459 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-07-26T01:58:23,461 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-07-26T01:58:23,463 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-07-26T01:58:23,465 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-07-26T01:58:23,468 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-07-26T01:58:23,470 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-07-26T01:58:23,472 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,474 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,477 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,479 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,481 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,484 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-07-26T01:58:23,485 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-07-26T01:58:23,488 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-07-26T01:58:23,490 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-07-26T01:58:23,493 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-07-26T01:58:23,495 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-07-26T01:58:23,497 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-07-26T01:58:23,499 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-07-26T01:58:23,501 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,504 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,506 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,509 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-07-26T01:58:23,510 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-07-26T01:58:23,512 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-07-26T01:58:23,515 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-07-26T01:58:23,517 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-07-26T01:58:23,519 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,522 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,524 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-07-26T01:58:23,525 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-07-26T01:58:23,527 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-07-26T01:58:23,530 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-07-26T01:58:23,532 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-07-26T01:58:23,535 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-07-26T01:58:23,538 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-07-26T01:58:23,540 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,543 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,547 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-07-26T01:58:23,548 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-07-26T01:58:23,551 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-07-26T01:58:23,554 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-07-26T01:58:23,556 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-07-26T01:58:23,559 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-07-26T01:58:23,561 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-07-26T01:58:23,564 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-07-26T01:58:23,567 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-07-26T01:58:23,570 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,572 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,575 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,577 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,580 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,582 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,585 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,587 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,590 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,593 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,595 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,598 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,601 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-07-26T01:58:23,604 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-07-26T01:58:23,605 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-07-26T01:58:23,608 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-07-26T01:58:23,610 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-07-26T01:58:23,614 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-07-26T01:58:23,615 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,618 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,621 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,624 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,627 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,630 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,633 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,636 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,640 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,644 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,648 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,651 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,655 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,658 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,662 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,666 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,669 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,673 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,676 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,680 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,683 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,687 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-07-26T01:58:23,692 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-07-26T01:58:23,694 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,699 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,702 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,705 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,709 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,711 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,714 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,717 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,719 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,722 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,725 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,728 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-07-26T01:58:23,731 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-07-26T01:58:23,734 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-07-26T01:58:23,735 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-07-26T01:58:23,738 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-07-26T01:58:23,740 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-07-26T01:58:23,743 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-07-26T01:58:23,746 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-07-26T01:58:23,748 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-07-26T01:58:23,750 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-07-26T01:58:23,753 creating build/bdist.linux-armv7l/wheel/omicverse/external/scfea 2026-07-26T01:58:23,755 creating build/bdist.linux-armv7l/wheel/omicverse/external/scfea/data 2026-07-26T01:58:23,756 copying build/lib/omicverse/external/scfea/data/cName_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-07-26T01:58:23,758 copying build/lib/omicverse/external/scfea/data/cName_complete_mouse_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-07-26T01:58:23,761 copying build/lib/omicverse/external/scfea/data/module_gene_complete_mouse_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-07-26T01:58:23,763 copying build/lib/omicverse/external/scfea/data/cmMat_complete_mouse_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-07-26T01:58:23,766 copying build/lib/omicverse/external/scfea/data/module_gene_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-07-26T01:58:23,769 copying build/lib/omicverse/external/scfea/data/cmMat_c70_m168.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-07-26T01:58:23,771 copying build/lib/omicverse/external/scfea/data/Human_M168_information.symbols.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea/data 2026-07-26T01:58:23,774 copying build/lib/omicverse/external/scfea/ClassFlux.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-07-26T01:58:23,776 copying build/lib/omicverse/external/scfea/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-07-26T01:58:23,779 copying build/lib/omicverse/external/scfea/DatasetFlux.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-07-26T01:58:23,781 copying build/lib/omicverse/external/scfea/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-07-26T01:58:23,783 copying build/lib/omicverse/external/scfea/scFEA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scfea 2026-07-26T01:58:23,786 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-07-26T01:58:23,787 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-07-26T01:58:23,790 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-07-26T01:58:23,792 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-07-26T01:58:23,795 creating build/bdist.linux-armv7l/wheel/omicverse/external/py_scmetabolism 2026-07-26T01:58:23,796 copying build/lib/omicverse/external/py_scmetabolism/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-07-26T01:58:23,799 copying build/lib/omicverse/external/py_scmetabolism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-07-26T01:58:23,801 copying build/lib/omicverse/external/py_scmetabolism/methods.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-07-26T01:58:23,803 copying build/lib/omicverse/external/py_scmetabolism/compute.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/py_scmetabolism 2026-07-26T01:58:23,807 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-07-26T01:58:23,808 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-07-26T01:58:23,811 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-07-26T01:58:23,813 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-07-26T01:58:23,816 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-07-26T01:58:23,818 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-07-26T01:58:23,821 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-07-26T01:58:23,823 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-07-26T01:58:23,826 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-07-26T01:58:23,828 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-07-26T01:58:23,831 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-07-26T01:58:23,833 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-07-26T01:58:23,836 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-07-26T01:58:23,838 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-07-26T01:58:23,841 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-07-26T01:58:23,845 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-07-26T01:58:23,846 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-07-26T01:58:23,849 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-07-26T01:58:23,851 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-07-26T01:58:23,854 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-07-26T01:58:23,858 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-07-26T01:58:23,860 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-07-26T01:58:23,863 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-07-26T01:58:23,865 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-07-26T01:58:23,868 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-07-26T01:58:23,871 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-07-26T01:58:23,874 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-07-26T01:58:23,877 copying build/lib/omicverse/external/torch_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-07-26T01:58:23,880 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-07-26T01:58:23,881 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-07-26T01:58:23,884 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-07-26T01:58:23,889 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-07-26T01:58:23,890 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-07-26T01:58:23,893 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-07-26T01:58:23,895 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-07-26T01:58:23,897 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-07-26T01:58:23,900 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-07-26T01:58:23,903 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-07-26T01:58:23,905 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-07-26T01:58:23,908 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-07-26T01:58:23,909 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-07-26T01:58:23,912 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-07-26T01:58:23,913 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-07-26T01:58:23,916 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-07-26T01:58:23,919 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-07-26T01:58:23,921 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-07-26T01:58:23,924 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-07-26T01:58:23,926 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-07-26T01:58:23,929 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-07-26T01:58:23,931 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-07-26T01:58:23,933 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-07-26T01:58:23,936 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-07-26T01:58:23,937 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-07-26T01:58:23,940 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-07-26T01:58:23,943 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-07-26T01:58:23,944 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-07-26T01:58:23,946 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-07-26T01:58:23,949 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-07-26T01:58:23,952 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-07-26T01:58:23,954 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost 2026-07-26T01:58:23,956 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data 2026-07-26T01:58:23,958 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db 2026-07-26T01:58:23,960 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/human 2026-07-26T01:58:23,962 copying build/lib/omicverse/external/mebocost/data/mebocost_db/human/human_met_sensor_update_Oct21_2025.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/human 2026-07-26T01:58:23,967 copying build/lib/omicverse/external/mebocost/data/mebocost_db/human/metabolite_associated_gene_reaction_HMDB_summary.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/human 2026-07-26T01:58:23,990 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/common 2026-07-26T01:58:23,991 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/human_mouse_homology_gene_pair.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-07-26T01:58:23,999 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/metabolite_annotation_HMDB_summary.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-07-26T01:58:24,020 copying build/lib/omicverse/external/mebocost/data/mebocost_db/common/hmdb_blood_metabolite_concentration.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/common 2026-07-26T01:58:24,023 creating build/bdist.linux-armv7l/wheel/omicverse/external/mebocost/data/mebocost_db/mouse 2026-07-26T01:58:24,024 copying build/lib/omicverse/external/mebocost/data/mebocost_db/mouse/mouse_met_sensor_update_Oct21_2025.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/mouse 2026-07-26T01:58:24,027 copying build/lib/omicverse/external/mebocost/data/mebocost_db/mouse/metabolite_associated_gene_reaction_HMDB_summary_mouse.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost/data/mebocost_db/mouse 2026-07-26T01:58:24,046 copying build/lib/omicverse/external/mebocost/crosstalk_calculator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-07-26T01:58:24,049 copying build/lib/omicverse/external/mebocost/MetEstimator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-07-26T01:58:24,052 copying build/lib/omicverse/external/mebocost/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-07-26T01:58:24,054 copying build/lib/omicverse/external/mebocost/mebocost.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-07-26T01:58:24,059 copying build/lib/omicverse/external/mebocost/fba_handler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-07-26T01:58:24,060 copying build/lib/omicverse/external/mebocost/crosstalk_diff.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-07-26T01:58:24,063 copying build/lib/omicverse/external/mebocost/crosstalk_plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mebocost 2026-07-26T01:58:24,067 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-07-26T01:58:24,068 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-07-26T01:58:24,070 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-07-26T01:58:24,072 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-07-26T01:58:24,075 creating build/bdist.linux-armv7l/wheel/omicverse/external/gtfparse 2026-07-26T01:58:24,076 copying build/lib/omicverse/external/gtfparse/create_missing_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-07-26T01:58:24,078 copying build/lib/omicverse/external/gtfparse/parsing_error.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-07-26T01:58:24,080 copying build/lib/omicverse/external/gtfparse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-07-26T01:58:24,082 copying build/lib/omicverse/external/gtfparse/attribute_parsing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-07-26T01:58:24,084 copying build/lib/omicverse/external/gtfparse/read_gtf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-07-26T01:58:24,087 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-07-26T01:58:24,088 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-07-26T01:58:24,090 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-07-26T01:58:24,092 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-07-26T01:58:24,095 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-07-26T01:58:24,097 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-07-26T01:58:24,098 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-07-26T01:58:24,100 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-07-26T01:58:24,102 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-07-26T01:58:24,105 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-07-26T01:58:24,107 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-07-26T01:58:24,110 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-07-26T01:58:24,112 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-07-26T01:58:24,113 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-07-26T01:58:24,115 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-07-26T01:58:24,117 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-07-26T01:58:24,120 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-07-26T01:58:24,122 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-07-26T01:58:24,124 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-07-26T01:58:24,127 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-07-26T01:58:24,128 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-07-26T01:58:24,129 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-07-26T01:58:24,132 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-07-26T01:58:24,134 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-07-26T01:58:24,135 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-07-26T01:58:24,139 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-07-26T01:58:24,141 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-07-26T01:58:24,142 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-07-26T01:58:24,143 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-07-26T01:58:24,168 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-07-26T01:58:24,191 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-07-26T01:58:24,208 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-07-26T01:58:24,215 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-07-26T01:58:24,223 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-07-26T01:58:24,231 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-07-26T01:58:24,232 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-07-26T01:58:24,235 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-07-26T01:58:24,237 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-07-26T01:58:24,239 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-07-26T01:58:24,242 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,243 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,245 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,248 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,249 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,252 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,254 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,256 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,258 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,260 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,261 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,263 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-07-26T01:58:24,266 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,267 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,270 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,272 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,274 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,277 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,279 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,281 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,283 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,286 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,288 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,291 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,293 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,295 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,298 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,300 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,303 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,304 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,307 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-07-26T01:58:24,310 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-07-26T01:58:24,312 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-07-26T01:58:24,314 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-07-26T01:58:24,316 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-07-26T01:58:24,317 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-07-26T01:58:24,320 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-07-26T01:58:24,321 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-07-26T01:58:24,323 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-07-26T01:58:24,325 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-07-26T01:58:24,327 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-07-26T01:58:24,330 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-07-26T01:58:24,331 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-07-26T01:58:24,333 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-07-26T01:58:24,336 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-07-26T01:58:24,338 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-07-26T01:58:24,340 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-07-26T01:58:24,343 creating build/bdist.linux-armv7l/wheel/omicverse/external/samap 2026-07-26T01:58:24,344 copying build/lib/omicverse/external/samap/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/samap 2026-07-26T01:58:24,345 copying build/lib/omicverse/external/samap/_run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/samap 2026-07-26T01:58:24,348 copying build/lib/omicverse/external/samap/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/samap 2026-07-26T01:58:24,350 copying build/lib/omicverse/external/samap/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/samap 2026-07-26T01:58:24,353 copying build/lib/omicverse/external/samap/analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/samap 2026-07-26T01:58:24,356 creating build/bdist.linux-armv7l/wheel/omicverse/external/samap/samalg 2026-07-26T01:58:24,357 copying build/lib/omicverse/external/samap/samalg/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/samap/samalg 2026-07-26T01:58:24,360 copying build/lib/omicverse/external/samap/samalg/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/samap/samalg 2026-07-26T01:58:24,363 copying build/lib/omicverse/external/samap/samalg/gui.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/samap/samalg 2026-07-26T01:58:24,367 creating build/bdist.linux-armv7l/wheel/omicverse/external/MetaQ 2026-07-26T01:58:24,368 copying build/lib/omicverse/external/MetaQ/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-07-26T01:58:24,370 copying build/lib/omicverse/external/MetaQ/engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-07-26T01:58:24,372 copying build/lib/omicverse/external/MetaQ/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-07-26T01:58:24,374 copying build/lib/omicverse/external/MetaQ/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/MetaQ 2026-07-26T01:58:24,377 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-07-26T01:58:24,378 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,380 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,382 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,384 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,387 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,389 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,391 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-07-26T01:58:24,392 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-07-26T01:58:24,394 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-07-26T01:58:24,397 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-07-26T01:58:24,400 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-07-26T01:58:24,402 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-07-26T01:58:24,404 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-07-26T01:58:24,407 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-07-26T01:58:24,409 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-07-26T01:58:24,412 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,414 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,417 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,418 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,420 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,422 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,424 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,427 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,429 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,432 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,433 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,436 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,438 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-07-26T01:58:24,440 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-07-26T01:58:24,443 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-07-26T01:58:24,446 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-07-26T01:58:24,449 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-07-26T01:58:24,450 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-07-26T01:58:24,454 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-07-26T01:58:24,456 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-07-26T01:58:24,459 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,462 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,465 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-07-26T01:58:24,466 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-07-26T01:58:24,469 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-07-26T01:58:24,472 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-07-26T01:58:24,474 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-07-26T01:58:24,477 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-07-26T01:58:24,479 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-07-26T01:58:24,483 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-07-26T01:58:24,484 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-07-26T01:58:24,486 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-07-26T01:58:24,489 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-07-26T01:58:24,492 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-07-26T01:58:24,495 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-07-26T01:58:24,500 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-07-26T01:58:24,503 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-07-26T01:58:24,505 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-07-26T01:58:24,508 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-07-26T01:58:24,510 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-07-26T01:58:24,513 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-07-26T01:58:24,516 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-07-26T01:58:24,519 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-07-26T01:58:24,521 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-07-26T01:58:24,524 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-07-26T01:58:24,527 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-07-26T01:58:24,528 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-07-26T01:58:24,531 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-07-26T01:58:24,534 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-07-26T01:58:24,537 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-07-26T01:58:24,540 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-07-26T01:58:24,543 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-07-26T01:58:24,544 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-07-26T01:58:24,545 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-07-26T01:58:24,547 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-07-26T01:58:24,549 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-07-26T01:58:24,552 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-07-26T01:58:24,555 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap 2026-07-26T01:58:24,556 copying build/lib/omicverse/external/gsmap/_regression_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,558 copying build/lib/omicverse/external/gsmap/_visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,560 copying build/lib/omicverse/external/gsmap/diagnosis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,563 copying build/lib/omicverse/external/gsmap/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,564 copying build/lib/omicverse/external/gsmap/find_latent_representation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,566 copying build/lib/omicverse/external/gsmap/spatial_ldsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,569 copying build/lib/omicverse/external/gsmap/_manhattan_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,571 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap/templates 2026-07-26T01:58:24,573 copying build/lib/omicverse/external/gsmap/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/templates 2026-07-26T01:58:24,575 copying build/lib/omicverse/external/gsmap/generate_ldscore.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,577 copying build/lib/omicverse/external/gsmap/latent_to_gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,580 creating build/bdist.linux-armv7l/wheel/omicverse/external/gsmap/gnn 2026-07-26T01:58:24,581 copying build/lib/omicverse/external/gsmap/gnn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-07-26T01:58:24,583 copying build/lib/omicverse/external/gsmap/gnn/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-07-26T01:58:24,585 copying build/lib/omicverse/external/gsmap/gnn/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-07-26T01:58:24,587 copying build/lib/omicverse/external/gsmap/gnn/adjacency_matrix.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap/gnn 2026-07-26T01:58:24,589 copying build/lib/omicverse/external/gsmap/_jackknife.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,591 copying build/lib/omicverse/external/gsmap/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,593 copying build/lib/omicverse/external/gsmap/_style.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,595 copying build/lib/omicverse/external/gsmap/_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,598 copying build/lib/omicverse/external/gsmap/cauchy_combination.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gsmap 2026-07-26T01:58:24,600 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-07-26T01:58:24,602 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-07-26T01:58:24,603 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-07-26T01:58:24,605 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-07-26T01:58:24,607 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-07-26T01:58:24,609 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-07-26T01:58:24,611 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-07-26T01:58:24,613 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-07-26T01:58:24,616 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-07-26T01:58:24,617 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-07-26T01:58:24,619 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-07-26T01:58:24,620 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-07-26T01:58:24,622 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-07-26T01:58:24,624 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-07-26T01:58:24,626 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-07-26T01:58:24,628 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-07-26T01:58:24,630 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-07-26T01:58:24,631 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-07-26T01:58:24,634 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-07-26T01:58:24,635 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-07-26T01:58:24,637 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-07-26T01:58:24,640 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-07-26T01:58:24,641 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-07-26T01:58:24,643 copying build/lib/omicverse/external/scMulan/utils/meta_info.pt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-07-26T01:58:24,647 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-07-26T01:58:24,649 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-07-26T01:58:24,651 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-07-26T01:58:24,652 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-07-26T01:58:25,087 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-07-26T01:58:25,089 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-07-26T01:58:25,115 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-07-26T01:58:25,118 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-07-26T01:58:25,121 creating build/bdist.linux-armv7l/wheel/omicverse/external/geosketch 2026-07-26T01:58:25,122 copying build/lib/omicverse/external/geosketch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-07-26T01:58:25,124 copying build/lib/omicverse/external/geosketch/sketch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-07-26T01:58:25,127 copying build/lib/omicverse/external/geosketch/kmeanspp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-07-26T01:58:25,130 copying build/lib/omicverse/external/geosketch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/geosketch 2026-07-26T01:58:25,132 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellcharter 2026-07-26T01:58:25,134 copying build/lib/omicverse/external/cellcharter/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-07-26T01:58:25,136 copying build/lib/omicverse/external/cellcharter/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-07-26T01:58:25,138 copying build/lib/omicverse/external/cellcharter/_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-07-26T01:58:25,140 copying build/lib/omicverse/external/cellcharter/_gmm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-07-26T01:58:25,142 copying build/lib/omicverse/external/cellcharter/_aggr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-07-26T01:58:25,145 copying build/lib/omicverse/external/cellcharter/_autok.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellcharter 2026-07-26T01:58:25,148 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-07-26T01:58:25,149 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,151 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,154 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,156 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,159 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,161 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,164 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,166 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,168 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,171 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,173 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,176 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,178 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-07-26T01:58:25,181 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-07-26T01:58:25,182 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-07-26T01:58:25,185 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-07-26T01:58:25,188 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-07-26T01:58:25,196 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-07-26T01:58:25,198 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-07-26T01:58:25,202 creating build/bdist.linux-armv7l/wheel/omicverse/external/istar 2026-07-26T01:58:25,203 copying build/lib/omicverse/external/istar/select_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,205 copying build/lib/omicverse/external/istar/pixannot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,208 copying build/lib/omicverse/external/istar/vision_transformer4k.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,211 copying build/lib/omicverse/external/istar/plot_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,213 copying build/lib/omicverse/external/istar/extract_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,215 copying build/lib/omicverse/external/istar/image.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,218 copying build/lib/omicverse/external/istar/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,219 copying build/lib/omicverse/external/istar/get_mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,221 copying build/lib/omicverse/external/istar/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,223 copying build/lib/omicverse/external/istar/requirements.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,226 copying build/lib/omicverse/external/istar/hipt_4k.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,228 copying build/lib/omicverse/external/istar/vision_transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,231 copying build/lib/omicverse/external/istar/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,233 copying build/lib/omicverse/external/istar/cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,236 copying build/lib/omicverse/external/istar/structural_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,238 copying build/lib/omicverse/external/istar/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,240 copying build/lib/omicverse/external/istar/hipt_heatmap_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,244 copying build/lib/omicverse/external/istar/impute_by_basic.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,247 copying build/lib/omicverse/external/istar/plot_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,249 copying build/lib/omicverse/external/istar/aggregate_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,252 copying build/lib/omicverse/external/istar/NOTICE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,255 copying build/lib/omicverse/external/istar/rescale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,258 copying build/lib/omicverse/external/istar/impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,261 copying build/lib/omicverse/external/istar/reorganize_imputed.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,263 copying build/lib/omicverse/external/istar/connected_components.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,266 copying build/lib/omicverse/external/istar/enrich.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,269 copying build/lib/omicverse/external/istar/visual.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,272 copying build/lib/omicverse/external/istar/hipt_model_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,275 copying build/lib/omicverse/external/istar/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,278 copying build/lib/omicverse/external/istar/differential.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,281 copying build/lib/omicverse/external/istar/marker_score.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,284 copying build/lib/omicverse/external/istar/reduce_dim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/istar 2026-07-26T01:58:25,288 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-07-26T01:58:25,290 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-07-26T01:58:25,293 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-07-26T01:58:25,295 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-07-26T01:58:25,299 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-07-26T01:58:25,302 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-07-26T01:58:25,306 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-07-26T01:58:25,309 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-07-26T01:58:25,311 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-07-26T01:58:25,314 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-07-26T01:58:25,317 copying build/lib/omicverse/external/umap_pytorch/fuzzy_gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-07-26T01:58:25,321 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-07-26T01:58:25,324 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-07-26T01:58:25,327 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-07-26T01:58:25,331 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-07-26T01:58:25,332 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-07-26T01:58:25,335 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-07-26T01:58:25,338 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-07-26T01:58:25,340 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-07-26T01:58:25,343 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-07-26T01:58:25,346 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-07-26T01:58:25,348 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-07-26T01:58:25,350 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-07-26T01:58:25,352 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-07-26T01:58:25,354 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-07-26T01:58:25,356 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-07-26T01:58:25,359 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-07-26T01:58:25,361 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-07-26T01:58:25,365 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-07-26T01:58:25,367 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-07-26T01:58:25,370 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-07-26T01:58:25,373 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-07-26T01:58:25,377 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-07-26T01:58:25,379 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-07-26T01:58:25,381 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-07-26T01:58:25,383 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-07-26T01:58:25,386 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-07-26T01:58:25,388 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-07-26T01:58:25,390 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-07-26T01:58:25,393 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-07-26T01:58:25,395 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-07-26T01:58:25,397 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-07-26T01:58:25,399 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-07-26T01:58:25,401 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-07-26T01:58:25,403 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-07-26T01:58:25,404 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-07-26T01:58:25,410 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-07-26T01:58:25,414 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-07-26T01:58:25,419 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-07-26T01:58:25,421 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-07-26T01:58:25,425 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-07-26T01:58:25,429 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-07-26T01:58:25,431 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-07-26T01:58:25,434 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-07-26T01:58:25,436 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-07-26T01:58:25,439 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-07-26T01:58:25,442 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-07-26T01:58:25,446 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-07-26T01:58:25,447 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-07-26T01:58:25,449 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-07-26T01:58:25,452 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-07-26T01:58:25,455 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-07-26T01:58:25,458 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-07-26T01:58:25,461 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-07-26T01:58:25,462 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-07-26T01:58:25,465 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-07-26T01:58:25,469 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-07-26T01:58:25,472 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-07-26T01:58:25,474 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-07-26T01:58:25,475 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-07-26T01:58:25,478 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-07-26T01:58:25,480 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-07-26T01:58:25,483 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-07-26T01:58:25,486 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,487 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,490 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,492 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,495 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,498 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,500 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,502 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,505 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,507 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,510 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,512 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,514 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,517 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,519 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,522 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,524 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,527 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,530 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-07-26T01:58:25,532 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-07-26T01:58:25,535 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-07-26T01:58:25,537 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-07-26T01:58:25,540 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-07-26T01:58:25,542 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-07-26T01:58:25,550 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-07-26T01:58:25,553 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-07-26T01:58:25,555 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-07-26T01:58:25,558 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-07-26T01:58:25,562 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-07-26T01:58:25,570 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-07-26T01:58:25,578 creating build/bdist.linux-armv7l/wheel/omicverse/external/supercell 2026-07-26T01:58:25,579 copying build/lib/omicverse/external/supercell/supercell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/supercell 2026-07-26T01:58:25,581 copying build/lib/omicverse/external/supercell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/supercell 2026-07-26T01:58:25,583 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-07-26T01:58:25,584 copying build/lib/omicverse/external/harmony/_harmony_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-07-26T01:58:25,587 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-07-26T01:58:25,589 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-07-26T01:58:25,591 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-07-26T01:58:25,593 copying build/lib/omicverse/external/harmony/_harmony_cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-07-26T01:58:25,596 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-07-26T01:58:25,597 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-07-26T01:58:25,599 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-07-26T01:58:25,601 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-07-26T01:58:25,604 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-07-26T01:58:25,606 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-07-26T01:58:25,608 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-07-26T01:58:25,610 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-07-26T01:58:25,611 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-07-26T01:58:25,614 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-07-26T01:58:25,616 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-07-26T01:58:25,619 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-07-26T01:58:25,620 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-07-26T01:58:25,621 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-07-26T01:58:25,623 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-07-26T01:58:25,626 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-07-26T01:58:25,628 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-07-26T01:58:25,631 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-07-26T01:58:25,633 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-07-26T01:58:25,636 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-07-26T01:58:25,638 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,640 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,642 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,644 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,646 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,649 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,651 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,653 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,655 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,657 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,660 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,663 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,665 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,667 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,669 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,671 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-07-26T01:58:25,674 creating build/bdist.linux-armv7l/wheel/omicverse/external/pylimma 2026-07-26T01:58:25,675 copying build/lib/omicverse/external/pylimma/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pylimma 2026-07-26T01:58:25,677 copying build/lib/omicverse/external/pylimma/fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pylimma 2026-07-26T01:58:25,681 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-07-26T01:58:25,683 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-07-26T01:58:25,685 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-07-26T01:58:25,687 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-07-26T01:58:25,689 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-07-26T01:58:25,692 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-07-26T01:58:25,694 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-07-26T01:58:25,697 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-07-26T01:58:25,700 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-07-26T01:58:25,704 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-07-26T01:58:25,706 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-07-26T01:58:25,709 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-07-26T01:58:25,711 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv 2026-07-26T01:58:25,712 copying build/lib/omicverse/external/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-07-26T01:58:25,714 copying build/lib/omicverse/external/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-07-26T01:58:25,716 copying build/lib/omicverse/external/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-07-26T01:58:25,719 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/algorithms 2026-07-26T01:58:25,720 copying build/lib/omicverse/external/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,722 copying build/lib/omicverse/external/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,724 copying build/lib/omicverse/external/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,726 copying build/lib/omicverse/external/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,728 copying build/lib/omicverse/external/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,730 copying build/lib/omicverse/external/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,732 copying build/lib/omicverse/external/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,734 copying build/lib/omicverse/external/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,736 copying build/lib/omicverse/external/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,739 copying build/lib/omicverse/external/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,741 copying build/lib/omicverse/external/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,743 copying build/lib/omicverse/external/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-07-26T01:58:25,746 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/hub 2026-07-26T01:58:25,747 copying build/lib/omicverse/external/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-07-26T01:58:25,749 copying build/lib/omicverse/external/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-07-26T01:58:25,751 copying build/lib/omicverse/external/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-07-26T01:58:25,753 copying build/lib/omicverse/external/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-07-26T01:58:25,755 copying build/lib/omicverse/external/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-07-26T01:58:25,757 copying build/lib/omicverse/external/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-07-26T01:58:25,759 copying build/lib/omicverse/external/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-07-26T01:58:25,762 copying build/lib/omicverse/external/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-07-26T01:58:25,765 creating build/bdist.linux-armv7l/wheel/omicverse/external/mcRigor 2026-07-26T01:58:25,766 copying build/lib/omicverse/external/mcRigor/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mcRigor 2026-07-26T01:58:25,768 copying build/lib/omicverse/external/mcRigor/rigor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mcRigor 2026-07-26T01:58:25,771 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-07-26T01:58:25,772 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,774 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,776 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,779 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,781 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,784 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,786 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,788 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,791 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,793 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,795 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,797 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-07-26T01:58:25,800 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-07-26T01:58:25,801 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-07-26T01:58:25,802 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-07-26T01:58:25,805 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-07-26T01:58:25,807 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-07-26T01:58:25,809 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-07-26T01:58:25,811 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-07-26T01:58:25,814 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-07-26T01:58:25,815 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-07-26T01:58:25,818 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-07-26T01:58:25,820 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-07-26T01:58:25,822 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-07-26T01:58:25,824 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-07-26T01:58:25,827 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-07-26T01:58:25,830 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-07-26T01:58:25,832 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-07-26T01:58:25,834 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-07-26T01:58:25,837 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-07-26T01:58:25,838 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-07-26T01:58:25,841 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-07-26T01:58:25,843 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-07-26T01:58:25,845 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-07-26T01:58:25,847 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-07-26T01:58:25,850 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-07-26T01:58:25,851 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,853 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,855 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,857 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,859 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,862 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,864 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,867 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,869 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,871 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,873 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,876 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,878 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,880 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,882 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-07-26T01:58:25,885 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-07-26T01:58:25,886 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-07-26T01:58:25,888 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-07-26T01:58:25,890 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-07-26T01:58:25,893 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-07-26T01:58:25,894 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-07-26T01:58:25,896 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,897 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,899 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,901 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,904 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,906 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,909 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,912 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,915 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,918 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,920 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,926 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-07-26T01:58:25,928 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:25,929 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:25,931 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:25,933 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:25,935 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:25,938 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-07-26T01:58:25,940 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:25,941 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:25,944 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:25,946 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:25,947 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:25,949 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:25,951 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:25,954 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-07-26T01:58:25,955 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-07-26T01:58:25,959 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-07-26T01:58:26,039 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-07-26T01:58:26,045 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:26,048 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:26,050 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:26,053 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:26,055 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:26,058 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-07-26T01:58:26,062 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-07-26T01:58:26,063 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,069 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-07-26T01:58:26,070 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-07-26T01:58:26,072 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-07-26T01:58:26,076 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-07-26T01:58:26,077 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-07-26T01:58:26,080 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-07-26T01:58:26,083 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-07-26T01:58:26,087 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:26,088 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:26,091 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:26,093 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:26,096 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:26,099 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:26,102 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:26,105 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-07-26T01:58:26,107 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-07-26T01:58:26,110 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-07-26T01:58:26,112 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-07-26T01:58:26,115 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-07-26T01:58:26,123 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,129 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-07-26T01:58:26,131 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-07-26T01:58:26,133 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-07-26T01:58:26,137 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-07-26T01:58:26,138 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-07-26T01:58:26,141 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-07-26T01:58:26,160 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-07-26T01:58:26,185 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-07-26T01:58:26,188 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-07-26T01:58:26,189 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-07-26T01:58:26,191 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-07-26T01:58:26,192 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-07-26T01:58:26,195 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-07-26T01:58:26,198 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-07-26T01:58:26,200 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-07-26T01:58:26,203 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-07-26T01:58:26,204 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-07-26T01:58:26,206 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-07-26T01:58:26,208 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-07-26T01:58:26,211 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-07-26T01:58:26,212 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-07-26T01:58:26,214 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-07-26T01:58:26,215 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-07-26T01:58:26,218 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-07-26T01:58:26,220 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-07-26T01:58:26,221 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-07-26T01:58:26,224 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-07-26T01:58:26,226 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-07-26T01:58:26,229 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-07-26T01:58:26,230 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-07-26T01:58:26,232 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-07-26T01:58:26,234 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-07-26T01:58:26,237 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,239 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,241 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,245 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-07-26T01:58:26,247 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-07-26T01:58:26,249 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-07-26T01:58:26,252 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-07-26T01:58:26,254 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,260 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-07-26T01:58:26,261 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-07-26T01:58:26,263 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-07-26T01:58:26,266 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-07-26T01:58:26,267 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-07-26T01:58:26,270 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-07-26T01:58:26,272 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-07-26T01:58:26,274 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-07-26T01:58:26,276 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-07-26T01:58:26,278 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-07-26T01:58:26,281 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-07-26T01:58:26,283 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-07-26T01:58:26,285 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-07-26T01:58:26,287 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-07-26T01:58:26,289 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-07-26T01:58:26,291 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-07-26T01:58:26,294 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-07-26T01:58:26,295 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-07-26T01:58:26,298 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-07-26T01:58:26,301 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-07-26T01:58:26,303 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-07-26T01:58:26,306 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-07-26T01:58:26,309 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-07-26T01:58:26,310 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-07-26T01:58:26,312 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-07-26T01:58:26,314 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-07-26T01:58:26,317 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,319 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,322 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-07-26T01:58:26,324 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-07-26T01:58:26,325 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-07-26T01:58:26,328 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-07-26T01:58:26,330 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-07-26T01:58:26,332 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-07-26T01:58:26,335 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-07-26T01:58:26,336 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-07-26T01:58:26,338 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-07-26T01:58:26,340 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-07-26T01:58:26,343 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-07-26T01:58:26,344 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-07-26T01:58:26,346 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-07-26T01:58:26,349 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-07-26T01:58:26,350 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-07-26T01:58:26,352 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-07-26T01:58:26,354 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-07-26T01:58:26,356 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-07-26T01:58:26,358 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-07-26T01:58:26,360 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-07-26T01:58:26,363 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-07-26T01:58:26,364 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-07-26T01:58:26,366 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-07-26T01:58:26,368 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-07-26T01:58:26,369 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-07-26T01:58:26,373 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-07-26T01:58:26,375 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-07-26T01:58:26,377 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-07-26T01:58:26,379 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-07-26T01:58:26,382 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-07-26T01:58:26,383 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-07-26T01:58:26,385 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-07-26T01:58:26,387 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:26,388 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:26,391 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:26,393 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:26,395 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:26,397 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-07-26T01:58:26,400 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-07-26T01:58:26,401 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-07-26T01:58:26,403 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-07-26T01:58:26,405 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-07-26T01:58:26,407 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-07-26T01:58:26,408 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-07-26T01:58:26,410 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-07-26T01:58:26,412 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-07-26T01:58:26,414 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-07-26T01:58:26,416 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,419 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,421 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,424 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-07-26T01:58:26,425 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-07-26T01:58:26,426 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-07-26T01:58:26,428 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-07-26T01:58:26,430 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-07-26T01:58:26,432 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-07-26T01:58:26,435 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-07-26T01:58:26,437 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-07-26T01:58:26,440 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-07-26T01:58:26,442 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,445 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,447 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,449 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,452 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,455 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,458 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,461 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,464 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,467 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,470 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,473 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-07-26T01:58:26,476 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-07-26T01:58:26,477 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-07-26T01:58:26,480 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-07-26T01:58:26,481 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-07-26T01:58:26,483 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-07-26T01:58:26,484 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-07-26T01:58:26,486 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-07-26T01:58:26,493 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-07-26T01:58:26,494 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-07-26T01:58:26,497 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-07-26T01:58:26,498 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-07-26T01:58:26,500 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-07-26T01:58:26,503 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-07-26T01:58:26,504 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-07-26T01:58:26,507 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-07-26T01:58:26,509 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-07-26T01:58:26,511 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-07-26T01:58:26,514 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-07-26T01:58:26,516 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-07-26T01:58:26,518 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-07-26T01:58:26,522 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-07-26T01:58:26,523 copying build/lib/omicverse/utils/_metabolights.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,525 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,528 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,531 copying build/lib/omicverse/utils/_ovagent_paths.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,532 copying build/lib/omicverse/utils/_versions.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,534 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,536 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,538 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,541 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,544 copying build/lib/omicverse/utils/agent_backend_streaming.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,547 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-07-26T01:58:26,548 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-07-26T01:58:26,550 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-07-26T01:58:26,552 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-07-26T01:58:26,554 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-07-26T01:58:26,556 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-07-26T01:58:26,558 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-07-26T01:58:26,561 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-07-26T01:58:26,563 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,566 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,568 copying build/lib/omicverse/utils/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,570 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,573 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,575 copying build/lib/omicverse/utils/agent_backend_anthropic.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,577 copying build/lib/omicverse/utils/agent_backend_dashscope.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,579 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,582 creating build/bdist.linux-armv7l/wheel/omicverse/utils/biocontext 2026-07-26T01:58:26,583 copying build/lib/omicverse/utils/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-07-26T01:58:26,585 copying build/lib/omicverse/utils/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-07-26T01:58:26,587 copying build/lib/omicverse/utils/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-07-26T01:58:26,590 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,593 copying build/lib/omicverse/utils/agent_backend_gemini.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,596 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-07-26T01:58:26,597 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-07-26T01:58:26,600 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-07-26T01:58:26,602 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-07-26T01:58:26,604 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-07-26T01:58:26,607 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-07-26T01:58:26,609 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-07-26T01:58:26,612 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-07-26T01:58:26,615 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-07-26T01:58:26,617 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-07-26T01:58:26,620 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-07-26T01:58:26,622 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,625 copying build/lib/omicverse/utils/_seed.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,627 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,630 creating build/bdist.linux-armv7l/wheel/omicverse/utils/gpuex 2026-07-26T01:58:26,631 copying build/lib/omicverse/utils/gpuex/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex 2026-07-26T01:58:26,633 creating build/bdist.linux-armv7l/wheel/omicverse/utils/gpuex/umap 2026-07-26T01:58:26,634 copying build/lib/omicverse/utils/gpuex/umap/_sgd_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-07-26T01:58:26,636 copying build/lib/omicverse/utils/gpuex/umap/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-07-26T01:58:26,639 copying build/lib/omicverse/utils/gpuex/umap/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-07-26T01:58:26,641 copying build/lib/omicverse/utils/gpuex/umap/_init.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-07-26T01:58:26,643 copying build/lib/omicverse/utils/gpuex/umap/_sgd.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-07-26T01:58:26,645 copying build/lib/omicverse/utils/gpuex/umap/_ab.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex/umap 2026-07-26T01:58:26,647 copying build/lib/omicverse/utils/gpuex/scipy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/gpuex 2026-07-26T01:58:26,649 copying build/lib/omicverse/utils/_memory.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,651 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,654 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,655 copying build/lib/omicverse/utils/agent_backend_openai.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,659 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,660 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,663 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,666 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,670 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-07-26T01:58:26,671 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,674 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,677 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,679 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,682 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,684 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,687 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,690 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,692 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,695 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,697 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,700 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,702 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-07-26T01:58:26,705 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-07-26T01:58:26,706 copying build/lib/omicverse/utils/ovagent/repair_loop.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,709 copying build/lib/omicverse/utils/ovagent/turn_followup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,711 copying build/lib/omicverse/utils/ovagent/context_budget.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,714 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,716 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,718 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,720 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,723 copying build/lib/omicverse/utils/ovagent/analysis_transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,725 copying build/lib/omicverse/utils/ovagent/permission_policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,728 copying build/lib/omicverse/utils/ovagent/session_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,730 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,733 copying build/lib/omicverse/utils/ovagent/tool_runtime_workspace.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,736 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,738 copying build/lib/omicverse/utils/ovagent/codegen_tool_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,740 copying build/lib/omicverse/utils/ovagent/tool_runtime_exec.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,743 copying build/lib/omicverse/utils/ovagent/tool_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,746 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,749 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,752 copying build/lib/omicverse/utils/ovagent/turn_artifacts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,755 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,758 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,760 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,762 copying build/lib/omicverse/utils/ovagent/tool_scheduler.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,765 copying build/lib/omicverse/utils/ovagent/analysis_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,767 copying build/lib/omicverse/utils/ovagent/tool_runtime_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,769 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,771 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,775 copying build/lib/omicverse/utils/ovagent/prompt_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,779 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,782 copying build/lib/omicverse/utils/ovagent/tool_runtime_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,784 copying build/lib/omicverse/utils/ovagent/event_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,786 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,789 copying build/lib/omicverse/utils/ovagent/analysis_diagnostics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-07-26T01:58:26,791 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,794 copying build/lib/omicverse/utils/agent_backend_common.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,797 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,799 copying build/lib/omicverse/utils/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,801 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,804 copying build/lib/omicverse/utils/_sample_metadata_alignment.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,807 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,809 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,812 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,815 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,817 copying build/lib/omicverse/utils/_ovagent_lookup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,819 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,822 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,825 copying build/lib/omicverse/utils/_gene_id_conversion.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,828 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,831 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,833 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,835 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,837 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-07-26T01:58:26,841 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-07-26T01:58:26,842 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-07-26T01:58:26,844 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-07-26T01:58:26,848 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-07-26T01:58:26,850 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-07-26T01:58:26,854 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-07-26T01:58:26,857 copying build/lib/omicverse/jarvis/channels/channel_core.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-07-26T01:58:26,859 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-07-26T01:58:26,863 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-07-26T01:58:26,866 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-07-26T01:58:26,869 copying build/lib/omicverse/jarvis/channel_media.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,872 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,874 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-07-26T01:58:26,876 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-07-26T01:58:26,879 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-07-26T01:58:26,881 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-07-26T01:58:26,883 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,885 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,888 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,890 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,892 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,896 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,900 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,905 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,909 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-07-26T01:58:26,910 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-07-26T01:58:26,913 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-07-26T01:58:26,915 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-07-26T01:58:26,917 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-07-26T01:58:26,919 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-07-26T01:58:26,921 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-07-26T01:58:26,924 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-07-26T01:58:26,926 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,929 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-07-26T01:58:26,930 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-07-26T01:58:26,932 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-07-26T01:58:26,935 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,939 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,941 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,944 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,947 copying build/lib/omicverse/jarvis/gemini_cli_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,950 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,952 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-07-26T01:58:26,955 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-07-26T01:58:26,957 creating build/bdist.linux-armv7l/wheel/omicverse/report 2026-07-26T01:58:26,959 copying build/lib/omicverse/report/_provenance.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-07-26T01:58:26,962 copying build/lib/omicverse/report/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-07-26T01:58:26,964 copying build/lib/omicverse/report/_plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-07-26T01:58:26,966 copying build/lib/omicverse/report/_html.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-07-26T01:58:26,969 copying build/lib/omicverse/report/_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/report 2026-07-26T01:58:26,972 creating build/bdist.linux-armv7l/wheel/omicverse/es 2026-07-26T01:58:26,974 copying build/lib/omicverse/es/_viper.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:26,977 copying build/lib/omicverse/es/_query_set.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:26,979 copying build/lib/omicverse/es/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:26,982 copying build/lib/omicverse/es/_ucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:26,985 copying build/lib/omicverse/es/_mdt.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:26,988 copying build/lib/omicverse/es/_ulm.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:26,991 copying build/lib/omicverse/es/_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:26,994 copying build/lib/omicverse/es/_run.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:26,997 copying build/lib/omicverse/es/_pv.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:26,999 copying build/lib/omicverse/es/_ora.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,002 copying build/lib/omicverse/es/_datatype.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,004 copying build/lib/omicverse/es/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,007 copying build/lib/omicverse/es/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,009 copying build/lib/omicverse/es/_odeps.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,012 copying build/lib/omicverse/es/_mlm.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,014 copying build/lib/omicverse/es/_methods.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,016 copying build/lib/omicverse/es/_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,019 copying build/lib/omicverse/es/_decouple.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,022 copying build/lib/omicverse/es/_consensus.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,024 copying build/lib/omicverse/es/_zscore.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,027 copying build/lib/omicverse/es/_gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,030 copying build/lib/omicverse/es/_method.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,032 copying build/lib/omicverse/es/_gsva.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,036 copying build/lib/omicverse/es/_udt.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,038 copying build/lib/omicverse/es/_waggr.py -> build/bdist.linux-armv7l/wheel/./omicverse/es 2026-07-26T01:58:27,041 copying build/lib/omicverse/_oom_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-07-26T01:58:27,044 creating build/bdist.linux-armv7l/wheel/omicverse/protein 2026-07-26T01:58:27,045 copying build/lib/omicverse/protein/_simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-07-26T01:58:27,047 copying build/lib/omicverse/protein/_impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-07-26T01:58:27,050 copying build/lib/omicverse/protein/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-07-26T01:58:27,052 copying build/lib/omicverse/protein/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-07-26T01:58:27,055 copying build/lib/omicverse/protein/_de.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-07-26T01:58:27,058 copying build/lib/omicverse/protein/_summarize.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-07-26T01:58:27,061 copying build/lib/omicverse/protein/_enrich.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-07-26T01:58:27,063 copying build/lib/omicverse/protein/_design.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-07-26T01:58:27,065 copying build/lib/omicverse/protein/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-07-26T01:58:27,068 copying build/lib/omicverse/protein/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-07-26T01:58:27,071 copying build/lib/omicverse/protein/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/protein 2026-07-26T01:58:27,074 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-07-26T01:58:27,075 copying build/lib/omicverse/datasets/_ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-07-26T01:58:27,078 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-07-26T01:58:27,081 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files 2026-07-26T01:58:27,082 copying build/lib/omicverse/datasets/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-07-26T01:58:27,086 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files/TF 2026-07-26T01:58:27,087 copying build/lib/omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-07-26T01:58:27,090 copying build/lib/omicverse/datasets/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-07-26T01:58:27,093 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-07-26T01:58:27,114 copying build/lib/omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-07-26T01:58:27,167 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-07-26T01:58:27,185 copying build/lib/omicverse/datasets/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-07-26T01:58:27,187 copying build/lib/omicverse/datasets/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-07-26T01:58:27,331 copying build/lib/omicverse/datasets/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-07-26T01:58:27,336 copying build/lib/omicverse/datasets/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-07-26T01:58:27,338 copying build/lib/omicverse/datasets/_airr.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-07-26T01:58:27,340 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-07-26T01:58:27,345 copying build/lib/omicverse/datasets/_protein.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-07-26T01:58:27,348 copying build/lib/omicverse/datasets/_ambient.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-07-26T01:58:27,350 copying build/lib/omicverse/datasets/_crossspecies.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-07-26T01:58:27,352 copying build/lib/omicverse/datasets/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-07-26T01:58:27,355 copying build/lib/omicverse/datasets/_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-07-26T01:58:27,357 copying build/lib/omicverse/datasets/_timecourse.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-07-26T01:58:27,359 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-07-26T01:58:27,363 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-07-26T01:58:27,365 creating build/bdist.linux-armv7l/wheel/omicverse/single/ev 2026-07-26T01:58:27,366 copying build/lib/omicverse/single/ev/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-07-26T01:58:27,369 copying build/lib/omicverse/single/ev/_pseudobulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-07-26T01:58:27,372 copying build/lib/omicverse/single/ev/_annotate.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-07-26T01:58:27,375 copying build/lib/omicverse/single/ev/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-07-26T01:58:27,377 copying build/lib/omicverse/single/ev/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-07-26T01:58:27,381 copying build/lib/omicverse/single/ev/_coloc.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-07-26T01:58:27,384 copying build/lib/omicverse/single/ev/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-07-26T01:58:27,386 copying build/lib/omicverse/single/ev/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-07-26T01:58:27,389 copying build/lib/omicverse/single/ev/_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-07-26T01:58:27,391 copying build/lib/omicverse/single/ev/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-07-26T01:58:27,394 copying build/lib/omicverse/single/ev/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/ev 2026-07-26T01:58:27,397 copying build/lib/omicverse/single/_autoresolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,400 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,403 copying build/lib/omicverse/single/_liana.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,406 copying build/lib/omicverse/single/_pseudobulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,408 copying build/lib/omicverse/single/_stavia.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,411 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,413 copying build/lib/omicverse/single/_monocle.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,416 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,419 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,422 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,425 copying build/lib/omicverse/single/_rpca.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,428 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,430 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,432 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,434 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,436 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,439 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,443 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,445 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,448 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,451 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,453 copying build/lib/omicverse/single/_comm.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,455 copying build/lib/omicverse/single/_perturb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,459 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,462 creating build/bdist.linux-armv7l/wheel/omicverse/single/_metacell_backends 2026-07-26T01:58:27,463 copying build/lib/omicverse/single/_metacell_backends/kmeans_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-07-26T01:58:27,465 copying build/lib/omicverse/single/_metacell_backends/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-07-26T01:58:27,467 copying build/lib/omicverse/single/_metacell_backends/geosketch_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-07-26T01:58:27,470 copying build/lib/omicverse/single/_metacell_backends/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-07-26T01:58:27,472 copying build/lib/omicverse/single/_metacell_backends/seacells_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-07-26T01:58:27,474 copying build/lib/omicverse/single/_metacell_backends/mc2_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-07-26T01:58:27,476 copying build/lib/omicverse/single/_metacell_backends/supercell_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-07-26T01:58:27,478 copying build/lib/omicverse/single/_metacell_backends/metaq_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-07-26T01:58:27,481 copying build/lib/omicverse/single/_metacell_backends/random_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/_metacell_backends 2026-07-26T01:58:27,483 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,486 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,489 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,492 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-07-26T01:58:27,494 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-07-26T01:58:27,495 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-07-26T01:58:27,497 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-07-26T01:58:27,499 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-07-26T01:58:27,502 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-07-26T01:58:27,506 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-07-26T01:58:27,508 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-07-26T01:58:27,509 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-07-26T01:58:27,512 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-07-26T01:58:27,514 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-07-26T01:58:27,517 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-07-26T01:58:27,519 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,524 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,527 copying build/lib/omicverse/single/_augur.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,530 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,534 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,538 copying build/lib/omicverse/single/_dynamic_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,541 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,544 copying build/lib/omicverse/single/_pseudotime_fate.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,548 copying build/lib/omicverse/single/_nmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,551 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,553 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,558 copying build/lib/omicverse/single/_cnv.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,560 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,563 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,566 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,569 copying build/lib/omicverse/single/_cross_species.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,571 copying build/lib/omicverse/single/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,574 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,577 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,580 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,583 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,586 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,588 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,591 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,593 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,595 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,598 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,600 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,603 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,609 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,611 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,614 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,616 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-07-26T01:58:27,619 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-07-26T01:58:27,620 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,623 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,625 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,627 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,630 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,632 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,637 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,639 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,642 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,645 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,647 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,650 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,653 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-07-26T01:58:27,656 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-07-26T01:58:27,657 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-07-26T01:58:27,659 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-07-26T01:58:27,661 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-07-26T01:58:27,663 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-07-26T01:58:27,666 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-07-26T01:58:27,669 creating build/bdist.linux-armv7l/wheel/omicverse/mol 2026-07-26T01:58:27,670 copying build/lib/omicverse/mol/_dock.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-07-26T01:58:27,672 copying build/lib/omicverse/mol/_drugs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-07-26T01:58:27,675 copying build/lib/omicverse/mol/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-07-26T01:58:27,677 copying build/lib/omicverse/mol/_pocket.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-07-26T01:58:27,680 copying build/lib/omicverse/mol/_check.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-07-26T01:58:27,681 copying build/lib/omicverse/mol/_view.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-07-26T01:58:27,684 copying build/lib/omicverse/mol/_structure.py -> build/bdist.linux-armv7l/wheel/./omicverse/mol 2026-07-26T01:58:27,687 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-07-26T01:58:27,688 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-07-26T01:58:27,692 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-07-26T01:58:27,693 copying build/lib/omicverse/pl/_funkyheatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,695 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,697 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,700 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,703 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,705 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,707 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,710 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,713 copying build/lib/omicverse/pl/_upset.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,716 copying build/lib/omicverse/pl/_branch_streamplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,719 copying build/lib/omicverse/pl/_plot1cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,722 copying build/lib/omicverse/pl/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,725 copying build/lib/omicverse/pl/_dynamic_trends.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,729 creating build/bdist.linux-armv7l/wheel/omicverse/pl/_data 2026-07-26T01:58:27,730 copying build/lib/omicverse/pl/_data/generate_centromeres.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-07-26T01:58:27,733 copying build/lib/omicverse/pl/_data/centromere_hg19.csv -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-07-26T01:58:27,735 copying build/lib/omicverse/pl/_data/centromere_hg38.csv -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-07-26T01:58:27,737 copying build/lib/omicverse/pl/_data/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-07-26T01:58:27,739 copying build/lib/omicverse/pl/_data/centromere_mm10.csv -> build/bdist.linux-armv7l/wheel/./omicverse/pl/_data 2026-07-26T01:58:27,741 copying build/lib/omicverse/pl/_venn_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,743 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,746 copying build/lib/omicverse/pl/_heatmap_marsilea.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,750 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,753 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,757 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,762 copying build/lib/omicverse/pl/_scanpy_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,765 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,767 copying build/lib/omicverse/pl/_cnv.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,770 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,774 copying build/lib/omicverse/pl/_plot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,778 copying build/lib/omicverse/pl/_ccc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,787 copying build/lib/omicverse/pl/_metabolism.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,789 copying build/lib/omicverse/pl/_perturbation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,792 copying build/lib/omicverse/pl/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,794 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,797 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,801 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,803 copying build/lib/omicverse/pl/_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,806 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,810 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,813 copying build/lib/omicverse/pl/_trajectory.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,817 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,820 copying build/lib/omicverse/pl/_scatterplot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,823 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,828 copying build/lib/omicverse/pl/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-07-26T01:58:27,831 creating build/bdist.linux-armv7l/wheel/omicverse/tl 2026-07-26T01:58:27,832 copying build/lib/omicverse/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/tl 2026-07-26T01:58:27,834 copying build/lib/omicverse/tl/_cross_species.py -> build/bdist.linux-armv7l/wheel/./omicverse/tl 2026-07-26T01:58:27,838 creating build/bdist.linux-armv7l/wheel/omicverse/synbio 2026-07-26T01:58:27,839 copying build/lib/omicverse/synbio/_rnadesign.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,842 copying build/lib/omicverse/synbio/_sbol.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,845 copying build/lib/omicverse/synbio/_dynamic.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,848 copying build/lib/omicverse/synbio/_binder.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,851 copying build/lib/omicverse/synbio/_thermo.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,854 copying build/lib/omicverse/synbio/_stability.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,857 copying build/lib/omicverse/synbio/_kcat.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,860 copying build/lib/omicverse/synbio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,863 creating build/bdist.linux-armv7l/wheel/omicverse/synbio/external 2026-07-26T01:58:27,864 creating build/bdist.linux-armv7l/wheel/omicverse/synbio/external/cfd 2026-07-26T01:58:27,866 copying build/lib/omicverse/synbio/external/cfd/pam_scores.pkl -> build/bdist.linux-armv7l/wheel/./omicverse/synbio/external/cfd 2026-07-26T01:58:27,868 copying build/lib/omicverse/synbio/external/cfd/mismatch_score.pkl -> build/bdist.linux-armv7l/wheel/./omicverse/synbio/external/cfd 2026-07-26T01:58:27,871 copying build/lib/omicverse/synbio/external/ec_reference.fasta -> build/bdist.linux-armv7l/wheel/./omicverse/synbio/external 2026-07-26T01:58:27,873 copying build/lib/omicverse/synbio/_codon.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,875 copying build/lib/omicverse/synbio/_expression.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,878 copying build/lib/omicverse/synbio/_device.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,880 copying build/lib/omicverse/synbio/_seqview.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,883 copying build/lib/omicverse/synbio/_clean.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,885 copying build/lib/omicverse/synbio/_evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,888 copying build/lib/omicverse/synbio/_esm_common.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,890 copying build/lib/omicverse/synbio/_circuit.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,893 copying build/lib/omicverse/synbio/_strain.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,896 copying build/lib/omicverse/synbio/_proteinmpnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,901 copying build/lib/omicverse/synbio/_library.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,904 copying build/lib/omicverse/synbio/_retrobio.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,908 copying build/lib/omicverse/synbio/_thermompnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,910 copying build/lib/omicverse/synbio/_gem.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,912 copying build/lib/omicverse/synbio/_boltz.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,915 copying build/lib/omicverse/synbio/_variant.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,917 copying build/lib/omicverse/synbio/_cfd.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,919 copying build/lib/omicverse/synbio/_retro.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,921 copying build/lib/omicverse/synbio/_primedesign.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,923 copying build/lib/omicverse/synbio/_design.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,925 copying build/lib/omicverse/synbio/_embed.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,927 copying build/lib/omicverse/synbio/_crispr.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,930 copying build/lib/omicverse/synbio/_structure.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,932 copying build/lib/omicverse/synbio/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,934 copying build/lib/omicverse/synbio/_ec.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,937 copying build/lib/omicverse/synbio/_assembly.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,939 copying build/lib/omicverse/synbio/_mrna.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,941 copying build/lib/omicverse/synbio/_rna.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,943 copying build/lib/omicverse/synbio/_editing.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,946 copying build/lib/omicverse/synbio/_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/synbio 2026-07-26T01:58:27,948 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-07-26T01:58:27,951 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-07-26T01:58:27,952 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-07-26T01:58:27,955 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-07-26T01:58:27,957 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-07-26T01:58:27,959 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-07-26T01:58:27,961 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-07-26T01:58:27,964 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-07-26T01:58:27,966 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-07-26T01:58:27,969 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-07-26T01:58:27,972 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-07-26T01:58:27,974 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-07-26T01:58:27,978 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-07-26T01:58:27,979 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:27,981 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:27,984 copying build/lib/omicverse/bulk/_gsea_numpy.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:27,987 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:27,989 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-07-26T01:58:27,990 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-07-26T01:58:27,992 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:27,995 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:28,008 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:28,010 copying build/lib/omicverse/bulk/_ora.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:28,013 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:28,015 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:28,019 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:28,021 copying build/lib/omicverse/bulk/_enrich_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:28,023 copying build/lib/omicverse/bulk/_wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:28,026 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:28,028 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-07-26T01:58:28,030 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-07-26T01:58:28,031 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-07-26T01:58:28,033 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-07-26T01:58:28,034 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-07-26T01:58:28,036 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-07-26T01:58:28,039 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-07-26T01:58:28,041 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-07-26T01:58:28,044 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-07-26T01:58:28,046 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-07-26T01:58:28,048 copying build/lib/omicverse/io/spatial/_atera.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-07-26T01:58:28,051 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-07-26T01:58:28,054 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-07-26T01:58:28,056 copying build/lib/omicverse/io/spatial/_xenium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-07-26T01:58:28,059 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-07-26T01:58:28,062 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-07-26T01:58:28,063 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-07-26T01:58:28,065 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-07-26T01:58:28,067 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-07-26T01:58:28,070 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-07-26T01:58:28,071 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-07-26T01:58:28,073 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-07-26T01:58:28,076 creating build/bdist.linux-armv7l/wheel/omicverse/epi 2026-07-26T01:58:28,077 copying build/lib/omicverse/epi/bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,079 copying build/lib/omicverse/epi/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,081 copying build/lib/omicverse/epi/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,083 copying build/lib/omicverse/epi/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,085 copying build/lib/omicverse/epi/upstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,087 copying build/lib/omicverse/epi/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,089 copying build/lib/omicverse/epi/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,091 copying build/lib/omicverse/epi/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,093 copying build/lib/omicverse/epi/pp.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,095 copying build/lib/omicverse/epi/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,096 copying build/lib/omicverse/epi/single.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,098 copying build/lib/omicverse/epi/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/epi 2026-07-26T01:58:28,101 creating build/bdist.linux-armv7l/wheel/omicverse/metabol 2026-07-26T01:58:28,102 copying build/lib/omicverse/metabol/_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,104 copying build/lib/omicverse/metabol/_impute.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,106 copying build/lib/omicverse/metabol/_integration.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,108 copying build/lib/omicverse/metabol/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,111 copying build/lib/omicverse/metabol/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,113 copying build/lib/omicverse/metabol/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,115 copying build/lib/omicverse/metabol/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,117 copying build/lib/omicverse/metabol/_plsda.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,119 copying build/lib/omicverse/metabol/_transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,122 copying build/lib/omicverse/metabol/_msea.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,124 copying build/lib/omicverse/metabol/_id_mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,126 copying build/lib/omicverse/metabol/pymetabo.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,128 copying build/lib/omicverse/metabol/_biomarker.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,131 copying build/lib/omicverse/metabol/_correlation.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,133 copying build/lib/omicverse/metabol/_multifactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,136 copying build/lib/omicverse/metabol/_mummichog.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,139 copying build/lib/omicverse/metabol/_fetchers.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,142 copying build/lib/omicverse/metabol/_lipidomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,144 copying build/lib/omicverse/metabol/_norm.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,146 copying build/lib/omicverse/metabol/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,149 copying build/lib/omicverse/metabol/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/metabol 2026-07-26T01:58:28,151 running install_egg_info 2026-07-26T01:58:28,157 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.2.4-py3.11.egg-info 2026-07-26T01:58:28,174 running install_scripts 2026-07-26T01:58:28,189 creating build/bdist.linux-armv7l/wheel/omicverse-2.2.4.dist-info/WHEEL 2026-07-26T01:58:28,192 creating '/tmp/pip-wheel-usulvrs6/.tmp-dbcljqow/omicverse-2.2.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-07-26T01:58:28,195 adding 'omicverse/__init__.py' 2026-07-26T01:58:28,197 adding 'omicverse/_lazy_loader.py' 2026-07-26T01:58:28,200 adding 'omicverse/_monitor.py' 2026-07-26T01:58:28,201 adding 'omicverse/_oom_compat.py' 2026-07-26T01:58:28,203 adding 'omicverse/_optional.py' 2026-07-26T01:58:28,209 adding 'omicverse/_registry.py' 2026-07-26T01:58:28,215 adding 'omicverse/_settings.py' 2026-07-26T01:58:28,219 adding 'omicverse/claw.py' 2026-07-26T01:58:28,220 adding 'omicverse/cli.py' 2026-07-26T01:58:28,223 adding 'omicverse/agent/__init__.py' 2026-07-26T01:58:28,226 adding 'omicverse/airr/__init__.py' 2026-07-26T01:58:28,231 adding 'omicverse/airr/_bcr.py' 2026-07-26T01:58:28,238 adding 'omicverse/airr/_bulk.py' 2026-07-26T01:58:28,241 adding 'omicverse/airr/_clonotype.py' 2026-07-26T01:58:28,245 adding 'omicverse/airr/_metrics.py' 2026-07-26T01:58:28,246 adding 'omicverse/airr/_qc.py' 2026-07-26T01:58:28,255 adding 'omicverse/airr/_tcr.py' 2026-07-26T01:58:28,262 adding 'omicverse/airr/_tcr_gex.py' 2026-07-26T01:58:28,266 adding 'omicverse/airr/io.py' 2026-07-26T01:58:28,270 adding 'omicverse/airr/plotting.py' 2026-07-26T01:58:28,274 adding 'omicverse/alignment/STAR.py' 2026-07-26T01:58:28,276 adding 'omicverse/alignment/__init__.py' 2026-07-26T01:58:28,279 adding 'omicverse/alignment/_cli_utils.py' 2026-07-26T01:58:28,282 adding 'omicverse/alignment/_db.py' 2026-07-26T01:58:28,287 adding 'omicverse/alignment/amplicon_16s.py' 2026-07-26T01:58:28,289 adding 'omicverse/alignment/cutadapt.py' 2026-07-26T01:58:28,293 adding 'omicverse/alignment/dada2.py' 2026-07-26T01:58:28,295 adding 'omicverse/alignment/fastp.py' 2026-07-26T01:58:28,297 adding 'omicverse/alignment/fasttree.py' 2026-07-26T01:58:28,301 adding 'omicverse/alignment/featureCount.py' 2026-07-26T01:58:28,303 adding 'omicverse/alignment/fq_dump.py' 2026-07-26T01:58:28,309 adding 'omicverse/alignment/kb_api.py' 2026-07-26T01:58:28,312 adding 'omicverse/alignment/mafft.py' 2026-07-26T01:58:28,314 adding 'omicverse/alignment/phylogeny.py' 2026-07-26T01:58:28,316 adding 'omicverse/alignment/pipeline.py' 2026-07-26T01:58:28,318 adding 'omicverse/alignment/prefetch.py' 2026-07-26T01:58:28,324 adding 'omicverse/alignment/simpleaf.py' 2026-07-26T01:58:28,327 adding 'omicverse/alignment/vsearch.py' 2026-07-26T01:58:28,342 adding 'omicverse/bulk/_Deseq2.py' 2026-07-26T01:58:28,348 adding 'omicverse/bulk/_Enrichment.py' 2026-07-26T01:58:28,353 adding 'omicverse/bulk/_Gene_module.py' 2026-07-26T01:58:28,355 adding 'omicverse/bulk/__init__.py' 2026-07-26T01:58:28,401 adding 'omicverse/bulk/_chm13.py' 2026-07-26T01:58:28,407 adding 'omicverse/bulk/_combat.py' 2026-07-26T01:58:28,408 adding 'omicverse/bulk/_decov.py' 2026-07-26T01:58:28,410 adding 'omicverse/bulk/_df_apply.py' 2026-07-26T01:58:28,415 adding 'omicverse/bulk/_dynamicTree.py' 2026-07-26T01:58:28,417 adding 'omicverse/bulk/_enrich_plot.py' 2026-07-26T01:58:28,419 adding 'omicverse/bulk/_gsea_numpy.py' 2026-07-26T01:58:28,421 adding 'omicverse/bulk/_network.py' 2026-07-26T01:58:28,423 adding 'omicverse/bulk/_ora.py' 2026-07-26T01:58:28,425 adding 'omicverse/bulk/_tcga.py' 2026-07-26T01:58:28,427 adding 'omicverse/bulk/_wgcna.py' 2026-07-26T01:58:28,429 adding 'omicverse/bulk/_alignment/__init__.py' 2026-07-26T01:58:28,431 adding 'omicverse/bulk2single/__init__.py' 2026-07-26T01:58:28,435 adding 'omicverse/bulk2single/_bulk2single.py' 2026-07-26T01:58:28,436 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-07-26T01:58:28,439 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-07-26T01:58:28,443 adding 'omicverse/bulk2single/_map_utils.py' 2026-07-26T01:58:28,448 adding 'omicverse/bulk2single/_map_utils1.py' 2026-07-26T01:58:28,450 adding 'omicverse/bulk2single/_scsemi.py' 2026-07-26T01:58:28,452 adding 'omicverse/bulk2single/_single2spatial.py' 2026-07-26T01:58:28,455 adding 'omicverse/bulk2single/_utils.py' 2026-07-26T01:58:28,457 adding 'omicverse/bulk2single/_vae.py' 2026-07-26T01:58:28,459 adding 'omicverse/datasets/__init__.py' 2026-07-26T01:58:28,461 adding 'omicverse/datasets/_airr.py' 2026-07-26T01:58:28,463 adding 'omicverse/datasets/_ambient.py' 2026-07-26T01:58:28,464 adding 'omicverse/datasets/_crossspecies.py' 2026-07-26T01:58:28,470 adding 'omicverse/datasets/_datasets.py' 2026-07-26T01:58:28,472 adding 'omicverse/datasets/_ev.py' 2026-07-26T01:58:28,474 adding 'omicverse/datasets/_genetics.py' 2026-07-26T01:58:28,475 adding 'omicverse/datasets/_metabolism.py' 2026-07-26T01:58:28,477 adding 'omicverse/datasets/_protein.py' 2026-07-26T01:58:28,478 adding 'omicverse/datasets/_signatures.py' 2026-07-26T01:58:28,480 adding 'omicverse/datasets/_timecourse.py' 2026-07-26T01:58:28,481 adding 'omicverse/datasets/data_files/README.md' 2026-07-26T01:58:28,521 adding 'omicverse/datasets/data_files/features_model_training_17.csv' 2026-07-26T01:58:28,524 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2026-07-26T01:58:38,687 Stored in directory: /tmp/pip-ephem-wheel-cache-2pg5slvc/wheels/cd/40/c3/00864a48fcdfd6e25298dc304e9de3c1f6a0fb2f414837c55b 2026-07-26T01:58:38,785 Successfully built omicverse 2026-07-26T01:58:39,164 Removed build tracker: '/tmp/pip-build-tracker-_5l4s225'