2026-07-26T23:52:37,836 Created temporary directory: /tmp/pip-ephem-wheel-cache-9yj485gg 2026-07-26T23:52:37,838 Created temporary directory: /tmp/pip-build-tracker-m01603ek 2026-07-26T23:52:37,839 Initialized build tracking at /tmp/pip-build-tracker-m01603ek 2026-07-26T23:52:37,839 Created build tracker: /tmp/pip-build-tracker-m01603ek 2026-07-26T23:52:37,840 Entered build tracker: /tmp/pip-build-tracker-m01603ek 2026-07-26T23:52:37,840 Created temporary directory: /tmp/pip-wheel-gl6xgs7x 2026-07-26T23:52:37,843 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-26T23:52:37,846 Created temporary directory: /tmp/pip-ephem-wheel-cache-m8ffpyob 2026-07-26T23:52:37,867 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-26T23:52:37,870 2 location(s) to search for versions of protfasta: 2026-07-26T23:52:37,870 * https://pypi.org/simple/protfasta/ 2026-07-26T23:52:37,870 * https://www.piwheels.org/simple/protfasta/ 2026-07-26T23:52:37,871 Fetching project page and analyzing links: https://pypi.org/simple/protfasta/ 2026-07-26T23:52:37,872 Getting page https://pypi.org/simple/protfasta/ 2026-07-26T23:52:37,873 Found index url https://pypi.org/simple 2026-07-26T23:52:38,201 Fetched page https://pypi.org/simple/protfasta/ as application/vnd.pypi.simple.v1+json 2026-07-26T23:52:38,207 Found link https://files.pythonhosted.org/packages/b6/1d/b12d413f49524f7ea99474c3a78de44e5559c74ea790714817405bd21a70/protfasta-0.1.0.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.0 2026-07-26T23:52:38,208 Found link https://files.pythonhosted.org/packages/af/6b/3e3d39ac1d3dd90466bf3c739bbc4437e7b9ce856b3c05c0619ee2eb4e62/protfasta-0.1.1.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.1 2026-07-26T23:52:38,209 Found link https://files.pythonhosted.org/packages/b0/16/c4e61affed66df7417ed90bfe3973fe6d8259dec4b2e4616b89569b81a52/protfasta-0.1.2.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.2 2026-07-26T23:52:38,210 Found link https://files.pythonhosted.org/packages/c1/e3/643241544561c734493085886f80bc472754df974cd21952df7917a29c2e/protfasta-0.1.3.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.3 2026-07-26T23:52:38,211 Found link https://files.pythonhosted.org/packages/71/de/58732fef89ed8a3a45f4bc850c9127687aac82ac2694195f2ddd3dde3a37/protfasta-0.1.4.1.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.4.1 2026-07-26T23:52:38,212 Found link https://files.pythonhosted.org/packages/3d/1c/868d14020b262a93f9317338a8424bd713cbd3b025e4db30f63b003d1e8d/protfasta-0.1.5.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.5 2026-07-26T23:52:38,213 Found link https://files.pythonhosted.org/packages/af/66/356bfa32c76a02a1fe857dca23909000cfb2888dd9c60fb5b38cf5a118fb/protfasta-0.1.7.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.7 2026-07-26T23:52:38,214 Found link https://files.pythonhosted.org/packages/42/f8/bba7aa837021c5d138491990b6a897704c5738b344495e35a396f4efcd5a/protfasta-0.1.8.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.8 2026-07-26T23:52:38,215 Found link https://files.pythonhosted.org/packages/9f/95/e41dedf5b225dd911eec23d804f336573b5d4df81974ed07ad6223dc01ec/protfasta-0.1.9.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.9 2026-07-26T23:52:38,216 Found link https://files.pythonhosted.org/packages/bc/01/ed9be35e0b9097d6814f9a0021f2cdc8ee15c29d4c77a945cc520cbe5b07/protfasta-0.1.10.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.10 2026-07-26T23:52:38,217 Found link https://files.pythonhosted.org/packages/e9/58/2a9ed49fbf534060ba1d56d6fba982c7d7f700ab9bde09f1b7cfa993de15/protfasta-0.1.11.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.11 2026-07-26T23:52:38,218 Found link https://files.pythonhosted.org/packages/b9/bc/0e7012b9844b098b6b121ac49632f72ac415c2ebc19dbf309a045011d7b9/protfasta-0.1.12.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.6), version: 0.1.12 2026-07-26T23:52:38,219 Found link https://files.pythonhosted.org/packages/ac/02/b8362a0d4c732fe9b07b76046993fa4ed3357d557f576d705c5375d48c48/protfasta-0.1.13.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7,<3.12.0), version: 0.1.13 2026-07-26T23:52:38,220 Found link https://files.pythonhosted.org/packages/e6/ba/57897933096f80984c0d69397229bdf22d8e5cffb8610cc1f0d7e67a83fd/protfasta-0.1.15.1.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.15.1 2026-07-26T23:52:38,221 Found link https://files.pythonhosted.org/packages/01/90/770b0a7411f6989c81d19e13b81df12ce95c10e46653e5276778a9384322/protfasta-0.1.15.2.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.15.2 2026-07-26T23:52:38,222 Found link https://files.pythonhosted.org/packages/62/1d/c76ef9ea542b853888a3c5c84bec7e5b87ba3cf586299cdef4727bf02f0d/protfasta-0.1.18.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.18 2026-07-26T23:52:38,223 Skipping link: No binaries permitted for protfasta: https://files.pythonhosted.org/packages/8e/ba/eaade0e053a108b5cbbb1c4a2ffae673847f7f266a2ebe76d784685d4643/protfasta-0.1.19-py3-none-any.whl (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,223 Found link https://files.pythonhosted.org/packages/9e/4f/e13404d1a6cc0591c5bb664e4faa07cb6bb5eb10aea72e4cbe4b3914a0d8/protfasta-0.1.19.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.19 2026-07-26T23:52:38,224 Skipping link: No binaries permitted for protfasta: https://files.pythonhosted.org/packages/03/48/1f22701f0b25c0ec2d61548f4fa87a172e69e8a85d2e1f4314ffa5e5b615/protfasta-0.1.20-py3-none-any.whl (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,225 Found link https://files.pythonhosted.org/packages/02/24/c659af43dfad137e2addc6683a202ec93268be20549f80ce2668b98fc352/protfasta-0.1.20.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.20 2026-07-26T23:52:38,226 Skipping link: No binaries permitted for protfasta: https://files.pythonhosted.org/packages/a6/7d/b172aac7b95f928accf9c648a6a9df5da718e61e8a7df4aa3de522d05440/protfasta-0.1.21-py3-none-any.whl (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,227 Found link https://files.pythonhosted.org/packages/f5/f0/5070d87afebbc7e36e4dad4977ad3053d5b122af75a0d01882289ca79982/protfasta-0.1.21.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.21 2026-07-26T23:52:38,228 Skipping link: No binaries permitted for protfasta: https://files.pythonhosted.org/packages/d0/bf/b9a166432caf685c5d3a9983794267dc3c15e6b1c7f97225b42e87eaeec4/protfasta-0.1.22-py3-none-any.whl (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,228 Found link https://files.pythonhosted.org/packages/72/bf/7b682a02ca5868ada5a5642c1ee97b343bbe39a289d02a563b258f53a78a/protfasta-0.1.22.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.7), version: 0.1.22 2026-07-26T23:52:38,229 Skipping link: No binaries permitted for protfasta: https://files.pythonhosted.org/packages/83/37/f5d9b50c80acbbe0f7944145f7186f81cafea7ba91c90a4d67fe610a749e/protfasta-0.1.23-py3-none-any.whl (from https://pypi.org/simple/protfasta/) (requires-python:>=3.9) 2026-07-26T23:52:38,230 Found link https://files.pythonhosted.org/packages/2d/f0/e4ab5c9e77f2aafd33b910cecaacd8be1a848753824f1e737b12b70d8167/protfasta-0.1.23.tar.gz (from https://pypi.org/simple/protfasta/) (requires-python:>=3.9), version: 0.1.23 2026-07-26T23:52:38,231 Fetching project page and analyzing links: https://www.piwheels.org/simple/protfasta/ 2026-07-26T23:52:38,232 Getting page https://www.piwheels.org/simple/protfasta/ 2026-07-26T23:52:38,233 Found index url https://www.piwheels.org/simple 2026-07-26T23:52:38,533 Fetched page https://www.piwheels.org/simple/protfasta/ as text/html 2026-07-26T23:52:38,540 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.22-py3-none-any.whl#sha256=cfee9857da4278520425a047c178b6c4f768e3d925f54f9a1ca706eac0446401 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,541 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.21-py3-none-any.whl#sha256=ff2be974dbcd1292acd1eed63f6dd3b3988014aaabe958b3962773782ec0b267 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,541 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.20-py3-none-any.whl#sha256=16c69ec5ef0da4a7a62718e7bff0701aa14e722c7da42b86cf8610cca6d0538d (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,542 Skipping link: No binaries permitted for protfasta: https://www.piwheels.org/simple/protfasta/protfasta-0.1.19-py3-none-any.whl#sha256=5be032f442cd09d0a68e92c9e533aad7f8c4a33718812b35e2b4b38c31dd5cd4 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,542 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.18-py3-none-any.whl#sha256=b57f7b4ff81094312884da9da1bbb955bc31cfeaec96b4e85100a155ce893d25 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,543 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.15.2-py3-none-any.whl#sha256=1caade68c7c93cf5a9136aaace666a8b2352e4f92f34226021cf275f96264a2c (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,543 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.15.1-py3-none-any.whl#sha256=5d8190970970f363c275b1b668df0bc4e2bd056c978b443fed42044cf1c6c8b1 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,544 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.13-py3-none-any.whl#sha256=0590857528201752af215a80ec43cf35b6d0da9d7ff41f5182446a7d32ac8589 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7,<3.12.0) 2026-07-26T23:52:38,544 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.12-py3-none-any.whl#sha256=9fb2c41e66622cddaa5f6f431c8777f0504e86ab01317dd6deca1edb3d3a31fd (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6) 2026-07-26T23:52:38,545 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.11-py3-none-any.whl#sha256=444fc84e257518010b395eda2039d9a3ab7ecf8fa36c643c461de09826d6586a (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6) 2026-07-26T23:52:38,546 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.10-py3-none-any.whl#sha256=2c81ab5f2689ad23ca52774e952da81069272fcab6d352ab5b5ed2acd62f4fff (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6) 2026-07-26T23:52:38,546 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.9-py3-none-any.whl#sha256=bbfd31e2c8fa8910d8c6ecdae2a8128c1c7a6bb9370221f070cfe156a5623da6 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6) 2026-07-26T23:52:38,547 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.8-py3-none-any.whl#sha256=ac8962d35239e2241ff04ef37a96a1eef001db1b0b7364eb40a1c040c9f68e65 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.6) 2026-07-26T23:52:38,548 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.7-py3-none-any.whl#sha256=d29649a70d3f3029e6a2bede5e67e63b8fb84f3642786d24b9acdecd89563578 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,548 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.5-py3-none-any.whl#sha256=ef65c902eab517ea7a9c3413b5c9d08559b3c027c91474ee1b59598142994760 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,549 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.4.1-py3-none-any.whl#sha256=b28ab8b2dd5bc6d7c2408f6dc218dcc84650e0324ff7fa030ce8ce6d7d61f38e (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,549 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.3-py3-none-any.whl#sha256=91891ee7da8ca221a0422b1d779a30cba120d8ea27c573ad3909984a454ac506 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,549 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.2-py3-none-any.whl#sha256=b4d855d9f2f1db5b27d517ccb4fcbd30acfe49eef3e9ad6f1ddfc16fc90147aa (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,550 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.1-py3-none-any.whl#sha256=7536ef50f573ff13afcaed3281eb90bdcef2fd632d67501908c4d90627619005 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,551 Skipping link: No binaries permitted for protfasta: https://archive1.piwheels.org/simple/protfasta/protfasta-0.1.0-py3-none-any.whl#sha256=ddeb14621185337b263b2e2467f6e991300639f791ba613411bd31e98c70ac01 (from https://www.piwheels.org/simple/protfasta/) (requires-python:>=3.7) 2026-07-26T23:52:38,551 Skipping link: not a file: https://www.piwheels.org/simple/protfasta/ 2026-07-26T23:52:38,552 Skipping link: not a file: https://pypi.org/simple/protfasta/ 2026-07-26T23:52:38,574 Given no hashes to check 1 links for project 'protfasta': discarding no candidates 2026-07-26T23:52:38,593 Collecting protfasta==0.1.23 2026-07-26T23:52:38,595 Created temporary directory: /tmp/pip-unpack-1kmu1ayz 2026-07-26T23:52:38,844 Downloading protfasta-0.1.23.tar.gz (136 kB) 2026-07-26T23:52:39,073 Added protfasta==0.1.23 from https://files.pythonhosted.org/packages/2d/f0/e4ab5c9e77f2aafd33b910cecaacd8be1a848753824f1e737b12b70d8167/protfasta-0.1.23.tar.gz to build tracker '/tmp/pip-build-tracker-m01603ek' 2026-07-26T23:52:39,079 Created temporary directory: /tmp/pip-build-env-2ycgh1q9 2026-07-26T23:52:39,083 Installing build dependencies: started 2026-07-26T23:52:39,085 Running command pip subprocess to install build dependencies 2026-07-26T23:52:40,215 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-07-26T23:52:40,620 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-07-26T23:52:40,643 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-07-26T23:52:42,644 Collecting setuptools>=61 2026-07-26T23:52:42,645 Obtaining dependency information for setuptools>=61 from https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata 2026-07-26T23:52:42,658 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-07-26T23:52:42,783 Collecting versioningit~=2.0 2026-07-26T23:52:42,784 Obtaining dependency information for versioningit~=2.0 from https://archive1.piwheels.org/simple/versioningit/versioningit-2.3.0-py3-none-any.whl.metadata 2026-07-26T23:52:43,095 Downloading https://archive1.piwheels.org/simple/versioningit/versioningit-2.3.0-py3-none-any.whl.metadata (9.4 kB) 2026-07-26T23:52:43,306 Collecting packaging>=17.1 2026-07-26T23:52:43,308 Obtaining dependency information for packaging>=17.1 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-07-26T23:52:43,332 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-07-26T23:52:43,523 Downloading https://archive1.piwheels.org/simple/versioningit/versioningit-2.3.0-py3-none-any.whl (35 kB) 2026-07-26T23:52:43,553 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-26T23:52:43,639 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-26T23:52:43,678 Using cached https://archive1.piwheels.org/simple/versioningit/versioningit-2.3.0-py3-none-any.whl (35 kB) 2026-07-26T23:52:43,704 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-07-26T23:52:43,795 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-07-26T23:52:46,539 Installing collected packages: setuptools, packaging, versioningit 2026-07-26T23:52:49,955 Creating /tmp/pip-build-env-2ycgh1q9/overlay/local/bin 2026-07-26T23:52:49,957 changing mode of /tmp/pip-build-env-2ycgh1q9/overlay/local/bin/versioningit to 755 2026-07-26T23:52:49,978 Successfully installed packaging-26.2 setuptools-83.0.0 versioningit-2.3.0 2026-07-26T23:52:50,267 Installing build dependencies: finished with status 'done' 2026-07-26T23:52:50,274 Getting requirements to build wheel: started 2026-07-26T23:52:50,275 Running command Getting requirements to build wheel 2026-07-26T23:52:50,970 /tmp/pip-build-env-2ycgh1q9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-26T23:52:50,970 !! 2026-07-26T23:52:50,971 ******************************************************************************** 2026-07-26T23:52:50,972 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-26T23:52:50,973 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-26T23:52:50,974 or your builds will no longer be supported. 2026-07-26T23:52:50,975 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-26T23:52:50,976 ******************************************************************************** 2026-07-26T23:52:50,977 !! 2026-07-26T23:52:50,977 corresp(dist, value, root_dir) 2026-07-26T23:52:51,057 running egg_info 2026-07-26T23:52:51,063 writing protfasta.egg-info/PKG-INFO 2026-07-26T23:52:51,067 writing dependency_links to protfasta.egg-info/dependency_links.txt 2026-07-26T23:52:51,069 writing entry points to protfasta.egg-info/entry_points.txt 2026-07-26T23:52:51,071 writing requirements to protfasta.egg-info/requires.txt 2026-07-26T23:52:51,072 writing top-level names to protfasta.egg-info/top_level.txt 2026-07-26T23:52:51,100 reading manifest file 'protfasta.egg-info/SOURCES.txt' 2026-07-26T23:52:51,105 reading manifest template 'MANIFEST.in' 2026-07-26T23:52:51,109 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-07-26T23:52:51,110 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-07-26T23:52:51,111 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-07-26T23:52:51,111 adding license file 'LICENSE' 2026-07-26T23:52:51,115 writing manifest file 'protfasta.egg-info/SOURCES.txt' 2026-07-26T23:52:51,214 Getting requirements to build wheel: finished with status 'done' 2026-07-26T23:52:51,217 Created temporary directory: /tmp/pip-modern-metadata-q9spjemg 2026-07-26T23:52:51,219 Preparing metadata (pyproject.toml): started 2026-07-26T23:52:51,221 Running command Preparing metadata (pyproject.toml) 2026-07-26T23:52:51,828 /tmp/pip-build-env-2ycgh1q9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-26T23:52:51,828 !! 2026-07-26T23:52:51,829 ******************************************************************************** 2026-07-26T23:52:51,829 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-26T23:52:51,830 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-26T23:52:51,831 or your builds will no longer be supported. 2026-07-26T23:52:51,832 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-26T23:52:51,832 ******************************************************************************** 2026-07-26T23:52:51,834 !! 2026-07-26T23:52:51,834 corresp(dist, value, root_dir) 2026-07-26T23:52:51,911 running dist_info 2026-07-26T23:52:51,923 creating /tmp/pip-modern-metadata-q9spjemg/protfasta.egg-info 2026-07-26T23:52:51,924 writing /tmp/pip-modern-metadata-q9spjemg/protfasta.egg-info/PKG-INFO 2026-07-26T23:52:51,929 writing dependency_links to /tmp/pip-modern-metadata-q9spjemg/protfasta.egg-info/dependency_links.txt 2026-07-26T23:52:51,930 writing entry points to /tmp/pip-modern-metadata-q9spjemg/protfasta.egg-info/entry_points.txt 2026-07-26T23:52:51,932 writing requirements to /tmp/pip-modern-metadata-q9spjemg/protfasta.egg-info/requires.txt 2026-07-26T23:52:51,933 writing top-level names to /tmp/pip-modern-metadata-q9spjemg/protfasta.egg-info/top_level.txt 2026-07-26T23:52:51,935 writing manifest file '/tmp/pip-modern-metadata-q9spjemg/protfasta.egg-info/SOURCES.txt' 2026-07-26T23:52:51,959 reading manifest file '/tmp/pip-modern-metadata-q9spjemg/protfasta.egg-info/SOURCES.txt' 2026-07-26T23:52:51,961 reading manifest template 'MANIFEST.in' 2026-07-26T23:52:51,965 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-07-26T23:52:51,966 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-07-26T23:52:51,966 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-07-26T23:52:51,967 adding license file 'LICENSE' 2026-07-26T23:52:51,970 writing manifest file '/tmp/pip-modern-metadata-q9spjemg/protfasta.egg-info/SOURCES.txt' 2026-07-26T23:52:51,971 creating '/tmp/pip-modern-metadata-q9spjemg/protfasta-0.1.23.dist-info' 2026-07-26T23:52:52,099 Preparing metadata (pyproject.toml): finished with status 'done' 2026-07-26T23:52:52,103 Source in /tmp/pip-wheel-gl6xgs7x/protfasta_07084e8fa44f43b3a174c16c706762c3 has version 0.1.23, which satisfies requirement protfasta==0.1.23 from https://files.pythonhosted.org/packages/2d/f0/e4ab5c9e77f2aafd33b910cecaacd8be1a848753824f1e737b12b70d8167/protfasta-0.1.23.tar.gz 2026-07-26T23:52:52,104 Removed protfasta==0.1.23 from https://files.pythonhosted.org/packages/2d/f0/e4ab5c9e77f2aafd33b910cecaacd8be1a848753824f1e737b12b70d8167/protfasta-0.1.23.tar.gz from build tracker '/tmp/pip-build-tracker-m01603ek' 2026-07-26T23:52:52,110 Created temporary directory: /tmp/pip-unpack-emvgyz1i 2026-07-26T23:52:52,111 Building wheels for collected packages: protfasta 2026-07-26T23:52:52,115 Created temporary directory: /tmp/pip-wheel-8tvuy4gm 2026-07-26T23:52:52,116 Destination directory: /tmp/pip-wheel-8tvuy4gm 2026-07-26T23:52:52,117 Building wheel for protfasta (pyproject.toml): started 2026-07-26T23:52:52,119 Running command Building wheel for protfasta (pyproject.toml) 2026-07-26T23:52:52,719 /tmp/pip-build-env-2ycgh1q9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-07-26T23:52:52,719 !! 2026-07-26T23:52:52,720 ******************************************************************************** 2026-07-26T23:52:52,721 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-07-26T23:52:52,722 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-07-26T23:52:52,722 or your builds will no longer be supported. 2026-07-26T23:52:52,724 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-07-26T23:52:52,724 ******************************************************************************** 2026-07-26T23:52:52,725 !! 2026-07-26T23:52:52,726 corresp(dist, value, root_dir) 2026-07-26T23:52:52,793 running bdist_wheel 2026-07-26T23:52:52,814 running build 2026-07-26T23:52:52,815 running build_py 2026-07-26T23:52:52,822 creating build/lib/protfasta 2026-07-26T23:52:52,824 copying protfasta/io.py -> build/lib/protfasta 2026-07-26T23:52:52,826 copying protfasta/protfasta_exceptions.py -> build/lib/protfasta 2026-07-26T23:52:52,828 copying protfasta/_configs.py -> build/lib/protfasta 2026-07-26T23:52:52,830 copying protfasta/_version.py -> build/lib/protfasta 2026-07-26T23:52:52,832 copying protfasta/__init__.py -> build/lib/protfasta 2026-07-26T23:52:52,835 copying protfasta/protfasta.py -> build/lib/protfasta 2026-07-26T23:52:52,837 copying protfasta/utilities.py -> build/lib/protfasta 2026-07-26T23:52:52,840 creating build/lib/protfasta/scripts 2026-07-26T23:52:52,841 copying protfasta/scripts/__init__.py -> build/lib/protfasta/scripts 2026-07-26T23:52:52,843 copying protfasta/scripts/pfasta.py -> build/lib/protfasta/scripts 2026-07-26T23:52:52,846 creating build/lib/protfasta/tests 2026-07-26T23:52:52,847 copying protfasta/tests/conftest.py -> build/lib/protfasta/tests 2026-07-26T23:52:52,849 copying protfasta/tests/test_pfasta_cli.py -> build/lib/protfasta/tests 2026-07-26T23:52:52,852 copying protfasta/tests/__init__.py -> build/lib/protfasta/tests 2026-07-26T23:52:52,854 copying protfasta/tests/test_protfasta.py -> build/lib/protfasta/tests 2026-07-26T23:52:52,858 running egg_info 2026-07-26T23:52:52,870 writing protfasta.egg-info/PKG-INFO 2026-07-26T23:52:52,873 writing dependency_links to protfasta.egg-info/dependency_links.txt 2026-07-26T23:52:52,874 writing entry points to protfasta.egg-info/entry_points.txt 2026-07-26T23:52:52,877 writing requirements to protfasta.egg-info/requires.txt 2026-07-26T23:52:52,878 writing top-level names to protfasta.egg-info/top_level.txt 2026-07-26T23:52:52,892 reading manifest file 'protfasta.egg-info/SOURCES.txt' 2026-07-26T23:52:52,896 reading manifest template 'MANIFEST.in' 2026-07-26T23:52:52,900 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-07-26T23:52:52,901 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-07-26T23:52:52,902 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-07-26T23:52:52,903 adding license file 'LICENSE' 2026-07-26T23:52:52,906 writing manifest file 'protfasta.egg-info/SOURCES.txt' 2026-07-26T23:52:52,913 copying protfasta/py.typed -> build/lib/protfasta 2026-07-26T23:52:52,915 creating build/lib/protfasta/data 2026-07-26T23:52:52,916 copying protfasta/data/README.md -> build/lib/protfasta/data 2026-07-26T23:52:52,918 copying protfasta/data/look_and_say.dat -> build/lib/protfasta/data 2026-07-26T23:52:52,920 creating build/lib/protfasta/data/test_data 2026-07-26T23:52:52,921 copying protfasta/data/test_data/aligned_seq_all_valid.fasta -> build/lib/protfasta/data/test_data 2026-07-26T23:52:52,923 copying protfasta/data/test_data/aligned_seq_all_valid_convertable.fasta -> build/lib/protfasta/data/test_data 2026-07-26T23:52:52,925 copying protfasta/data/test_data/aligned_seq_all_valid_unconvertable.fasta -> build/lib/protfasta/data/test_data 2026-07-26T23:52:52,927 copying protfasta/data/test_data/fixable_invalid.fasta -> build/lib/protfasta/data/test_data 2026-07-26T23:52:52,929 copying protfasta/data/test_data/test_data_with_bad_chars.fa -> build/lib/protfasta/data/test_data 2026-07-26T23:52:52,932 copying protfasta/data/test_data/test_data_with_nonstandard_chars.fa -> build/lib/protfasta/data/test_data 2026-07-26T23:52:52,934 copying protfasta/data/test_data/testset_1.fasta -> build/lib/protfasta/data/test_data 2026-07-26T23:52:52,936 copying protfasta/data/test_data/testset_duplicate.fasta -> build/lib/protfasta/data/test_data 2026-07-26T23:52:52,938 copying protfasta/data/test_data/testset_duplicate_seqs.fasta -> build/lib/protfasta/data/test_data 2026-07-26T23:52:52,941 copying protfasta/data/test_data/unfixable_invalid.fasta -> build/lib/protfasta/data/test_data 2026-07-26T23:52:52,943 creating build/lib/protfasta/tests/outdata 2026-07-26T23:52:52,944 copying protfasta/tests/outdata/readme.md -> build/lib/protfasta/tests/outdata 2026-07-26T23:52:52,946 copying protfasta/tests/outdata/test_out_1.fasta -> build/lib/protfasta/tests/outdata 2026-07-26T23:52:52,949 copying protfasta/tests/outdata/test_out_2.fasta -> build/lib/protfasta/tests/outdata 2026-07-26T23:52:52,951 creating build/lib/protfasta/tests/pfasta_test 2026-07-26T23:52:52,952 copying protfasta/tests/pfasta_test/100_seqs_with_allvalid.fasta -> build/lib/protfasta/tests/pfasta_test 2026-07-26T23:52:52,956 copying protfasta/tests/pfasta_test/100_seqs_with_invalid.fasta -> build/lib/protfasta/tests/pfasta_test 2026-07-26T23:52:52,960 copying protfasta/tests/pfasta_test/input_test.fasta -> build/lib/protfasta/tests/pfasta_test 2026-07-26T23:52:52,962 copying protfasta/tests/pfasta_test/run_coverage_tests.sh -> build/lib/protfasta/tests/pfasta_test 2026-07-26T23:52:52,977 installing to build/bdist.linux-armv7l/wheel 2026-07-26T23:52:52,978 running install 2026-07-26T23:52:53,001 running install_lib 2026-07-26T23:52:53,007 creating build/bdist.linux-armv7l/wheel 2026-07-26T23:52:53,009 creating build/bdist.linux-armv7l/wheel/protfasta 2026-07-26T23:52:53,011 copying build/lib/protfasta/io.py -> build/bdist.linux-armv7l/wheel/./protfasta 2026-07-26T23:52:53,014 copying build/lib/protfasta/protfasta_exceptions.py -> build/bdist.linux-armv7l/wheel/./protfasta 2026-07-26T23:52:53,016 creating build/bdist.linux-armv7l/wheel/protfasta/scripts 2026-07-26T23:52:53,017 copying build/lib/protfasta/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./protfasta/scripts 2026-07-26T23:52:53,019 copying build/lib/protfasta/scripts/pfasta.py -> build/bdist.linux-armv7l/wheel/./protfasta/scripts 2026-07-26T23:52:53,021 copying build/lib/protfasta/_configs.py -> build/bdist.linux-armv7l/wheel/./protfasta 2026-07-26T23:52:53,023 copying build/lib/protfasta/_version.py -> build/bdist.linux-armv7l/wheel/./protfasta 2026-07-26T23:52:53,025 copying build/lib/protfasta/__init__.py -> build/bdist.linux-armv7l/wheel/./protfasta 2026-07-26T23:52:53,028 creating build/bdist.linux-armv7l/wheel/protfasta/data 2026-07-26T23:52:53,030 creating build/bdist.linux-armv7l/wheel/protfasta/data/test_data 2026-07-26T23:52:53,031 copying build/lib/protfasta/data/test_data/test_data_with_bad_chars.fa -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data 2026-07-26T23:52:53,033 copying build/lib/protfasta/data/test_data/testset_duplicate.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data 2026-07-26T23:52:53,035 copying build/lib/protfasta/data/test_data/aligned_seq_all_valid_unconvertable.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data 2026-07-26T23:52:53,037 copying build/lib/protfasta/data/test_data/fixable_invalid.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data 2026-07-26T23:52:53,038 copying build/lib/protfasta/data/test_data/testset_1.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data 2026-07-26T23:52:53,040 copying build/lib/protfasta/data/test_data/unfixable_invalid.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data 2026-07-26T23:52:53,042 copying build/lib/protfasta/data/test_data/test_data_with_nonstandard_chars.fa -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data 2026-07-26T23:52:53,044 copying build/lib/protfasta/data/test_data/aligned_seq_all_valid_convertable.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data 2026-07-26T23:52:53,045 copying build/lib/protfasta/data/test_data/testset_duplicate_seqs.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data 2026-07-26T23:52:53,047 copying build/lib/protfasta/data/test_data/aligned_seq_all_valid.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/data/test_data 2026-07-26T23:52:53,049 copying build/lib/protfasta/data/look_and_say.dat -> build/bdist.linux-armv7l/wheel/./protfasta/data 2026-07-26T23:52:53,050 copying build/lib/protfasta/data/README.md -> build/bdist.linux-armv7l/wheel/./protfasta/data 2026-07-26T23:52:53,052 copying build/lib/protfasta/protfasta.py -> build/bdist.linux-armv7l/wheel/./protfasta 2026-07-26T23:52:53,054 copying build/lib/protfasta/py.typed -> build/bdist.linux-armv7l/wheel/./protfasta 2026-07-26T23:52:53,057 creating build/bdist.linux-armv7l/wheel/protfasta/tests 2026-07-26T23:52:53,058 creating build/bdist.linux-armv7l/wheel/protfasta/tests/outdata 2026-07-26T23:52:53,059 copying build/lib/protfasta/tests/outdata/test_out_2.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/tests/outdata 2026-07-26T23:52:53,062 copying build/lib/protfasta/tests/outdata/test_out_1.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/tests/outdata 2026-07-26T23:52:53,064 copying build/lib/protfasta/tests/outdata/readme.md -> build/bdist.linux-armv7l/wheel/./protfasta/tests/outdata 2026-07-26T23:52:53,066 creating build/bdist.linux-armv7l/wheel/protfasta/tests/pfasta_test 2026-07-26T23:52:53,067 copying build/lib/protfasta/tests/pfasta_test/run_coverage_tests.sh -> build/bdist.linux-armv7l/wheel/./protfasta/tests/pfasta_test 2026-07-26T23:52:53,069 copying build/lib/protfasta/tests/pfasta_test/100_seqs_with_invalid.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/tests/pfasta_test 2026-07-26T23:52:53,072 copying build/lib/protfasta/tests/pfasta_test/100_seqs_with_allvalid.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/tests/pfasta_test 2026-07-26T23:52:53,076 copying build/lib/protfasta/tests/pfasta_test/input_test.fasta -> build/bdist.linux-armv7l/wheel/./protfasta/tests/pfasta_test 2026-07-26T23:52:53,079 copying build/lib/protfasta/tests/conftest.py -> build/bdist.linux-armv7l/wheel/./protfasta/tests 2026-07-26T23:52:53,080 copying build/lib/protfasta/tests/test_pfasta_cli.py -> build/bdist.linux-armv7l/wheel/./protfasta/tests 2026-07-26T23:52:53,083 copying build/lib/protfasta/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./protfasta/tests 2026-07-26T23:52:53,085 copying build/lib/protfasta/tests/test_protfasta.py -> build/bdist.linux-armv7l/wheel/./protfasta/tests 2026-07-26T23:52:53,089 copying build/lib/protfasta/utilities.py -> build/bdist.linux-armv7l/wheel/./protfasta 2026-07-26T23:52:53,091 running install_egg_info 2026-07-26T23:52:53,097 Copying protfasta.egg-info to build/bdist.linux-armv7l/wheel/./protfasta-0.1.23-py3.11.egg-info 2026-07-26T23:52:53,109 running install_scripts 2026-07-26T23:52:53,122 creating build/bdist.linux-armv7l/wheel/protfasta-0.1.23.dist-info/WHEEL 2026-07-26T23:52:53,124 creating '/tmp/pip-wheel-8tvuy4gm/.tmp-nkihdilw/protfasta-0.1.23-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-07-26T23:52:53,129 adding 'protfasta/__init__.py' 2026-07-26T23:52:53,130 adding 'protfasta/_configs.py' 2026-07-26T23:52:53,132 adding 'protfasta/_version.py' 2026-07-26T23:52:53,135 adding 'protfasta/io.py' 2026-07-26T23:52:53,137 adding 'protfasta/protfasta.py' 2026-07-26T23:52:53,139 adding 'protfasta/protfasta_exceptions.py' 2026-07-26T23:52:53,140 adding 'protfasta/py.typed' 2026-07-26T23:52:53,142 adding 'protfasta/utilities.py' 2026-07-26T23:52:53,144 adding 'protfasta/data/README.md' 2026-07-26T23:52:53,145 adding 'protfasta/data/look_and_say.dat' 2026-07-26T23:52:53,147 adding 'protfasta/data/test_data/aligned_seq_all_valid.fasta' 2026-07-26T23:52:53,148 adding 'protfasta/data/test_data/aligned_seq_all_valid_convertable.fasta' 2026-07-26T23:52:53,149 adding 'protfasta/data/test_data/aligned_seq_all_valid_unconvertable.fasta' 2026-07-26T23:52:53,150 adding 'protfasta/data/test_data/fixable_invalid.fasta' 2026-07-26T23:52:53,151 adding 'protfasta/data/test_data/test_data_with_bad_chars.fa' 2026-07-26T23:52:53,153 adding 'protfasta/data/test_data/test_data_with_nonstandard_chars.fa' 2026-07-26T23:52:53,154 adding 'protfasta/data/test_data/testset_1.fasta' 2026-07-26T23:52:53,156 adding 'protfasta/data/test_data/testset_duplicate.fasta' 2026-07-26T23:52:53,157 adding 'protfasta/data/test_data/testset_duplicate_seqs.fasta' 2026-07-26T23:52:53,158 adding 'protfasta/data/test_data/unfixable_invalid.fasta' 2026-07-26T23:52:53,160 adding 'protfasta/scripts/__init__.py' 2026-07-26T23:52:53,162 adding 'protfasta/scripts/pfasta.py' 2026-07-26T23:52:53,164 adding 'protfasta/tests/__init__.py' 2026-07-26T23:52:53,165 adding 'protfasta/tests/conftest.py' 2026-07-26T23:52:53,167 adding 'protfasta/tests/test_pfasta_cli.py' 2026-07-26T23:52:53,173 adding 'protfasta/tests/test_protfasta.py' 2026-07-26T23:52:53,175 adding 'protfasta/tests/outdata/readme.md' 2026-07-26T23:52:53,177 adding 'protfasta/tests/outdata/test_out_1.fasta' 2026-07-26T23:52:53,178 adding 'protfasta/tests/outdata/test_out_2.fasta' 2026-07-26T23:52:53,188 adding 'protfasta/tests/pfasta_test/100_seqs_with_allvalid.fasta' 2026-07-26T23:52:53,197 adding 'protfasta/tests/pfasta_test/100_seqs_with_invalid.fasta' 2026-07-26T23:52:53,199 adding 'protfasta/tests/pfasta_test/input_test.fasta' 2026-07-26T23:52:53,201 adding 'protfasta/tests/pfasta_test/run_coverage_tests.sh' 2026-07-26T23:52:53,203 adding 'protfasta-0.1.23.dist-info/licenses/LICENSE' 2026-07-26T23:52:53,205 adding 'protfasta-0.1.23.dist-info/METADATA' 2026-07-26T23:52:53,206 adding 'protfasta-0.1.23.dist-info/WHEEL' 2026-07-26T23:52:53,207 adding 'protfasta-0.1.23.dist-info/entry_points.txt' 2026-07-26T23:52:53,208 adding 'protfasta-0.1.23.dist-info/top_level.txt' 2026-07-26T23:52:53,209 adding 'protfasta-0.1.23.dist-info/RECORD' 2026-07-26T23:52:53,212 removing build/bdist.linux-armv7l/wheel 2026-07-26T23:52:53,323 Building wheel for protfasta (pyproject.toml): finished with status 'done' 2026-07-26T23:52:53,330 Created wheel for protfasta: filename=protfasta-0.1.23-py3-none-any.whl size=143868 sha256=1b2a9374ef8361e6944167b5bcf8362317272a9c60c31eb70bd50bd203339811 2026-07-26T23:52:53,332 Stored in directory: /tmp/pip-ephem-wheel-cache-m8ffpyob/wheels/55/68/ff/8f05e2cf9548e2f15db0349a6889802bb34bceaa7457c58b6f 2026-07-26T23:52:53,343 Successfully built protfasta 2026-07-26T23:52:53,350 Removed build tracker: '/tmp/pip-build-tracker-m01603ek'