2026-08-03T18:33:05,483 Created temporary directory: /tmp/pip-ephem-wheel-cache-cz3o9jdb 2026-08-03T18:33:05,485 Created temporary directory: /tmp/pip-build-tracker-qrd9wylr 2026-08-03T18:33:05,486 Initialized build tracking at /tmp/pip-build-tracker-qrd9wylr 2026-08-03T18:33:05,486 Created build tracker: /tmp/pip-build-tracker-qrd9wylr 2026-08-03T18:33:05,487 Entered build tracker: /tmp/pip-build-tracker-qrd9wylr 2026-08-03T18:33:05,487 Created temporary directory: /tmp/pip-wheel-6681qp_k 2026-08-03T18:33:05,490 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-03T18:33:05,493 Created temporary directory: /tmp/pip-ephem-wheel-cache-6p7c_hrn 2026-08-03T18:33:05,515 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-03T18:33:05,518 2 location(s) to search for versions of galaxy-app: 2026-08-03T18:33:05,518 * https://pypi.org/simple/galaxy-app/ 2026-08-03T18:33:05,518 * https://www.piwheels.org/simple/galaxy-app/ 2026-08-03T18:33:05,519 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-app/ 2026-08-03T18:33:05,520 Getting page https://pypi.org/simple/galaxy-app/ 2026-08-03T18:33:05,521 Found index url https://pypi.org/simple 2026-08-03T18:33:05,750 Fetched page https://pypi.org/simple/galaxy-app/ as application/vnd.pypi.simple.v1+json 2026-08-03T18:33:05,766 Found link https://files.pythonhosted.org/packages/cd/3d/994b7f4faaee2a95a31af125e96734f3daa9f39e6decd0f7a09950ef686c/galaxy-app-20.5.0.tar.gz (from 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https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.5-py3-none-any.whl#sha256=1e9b1a29eee6bf66924f5da034af625e193ea4f7fe6585b2fee5379f94add213 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-08-03T18:33:06,049 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.4-py3-none-any.whl#sha256=0645d80a13b5594f7067c91e672962bdc25e46a38081f18d11d0aeaa34f8ee3d (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-08-03T18:33:06,049 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.3-py3-none-any.whl#sha256=a65f158d80ecabd0d612e24816a2e517007a19648a67381bdee48058c8236014 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-08-03T18:33:06,050 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.2-py3-none-any.whl#sha256=09f32912adb5c90cdbbcc5e2f3168a54501cb7595d207b2e660e4235e7e46067 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-08-03T18:33:06,050 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-23.0.1-py3-none-any.whl#sha256=e16745e48d15e5e5cb83991066b1e2dcb2333d49dac992e2601b9fc6af8f45a4 (from https://www.piwheels.org/simple/galaxy-app/) (requires-python:>=3.7) 2026-08-03T18:33:06,051 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-20.9.0-py2.py3-none-any.whl#sha256=d6b3897be5b3c63e0c7f914f9ce7df087cb3df8fa6d55b1475c7d933cdb09a29 (from https://www.piwheels.org/simple/galaxy-app/) 2026-08-03T18:33:06,052 Skipping link: No binaries permitted for galaxy-app: https://archive1.piwheels.org/simple/galaxy-app/galaxy_app-20.5.0-py2.py3-none-any.whl#sha256=2aa533c8296a5843fd06ce934c7c817845b12286e6b62fb94bb685f0259d9ad0 (from https://www.piwheels.org/simple/galaxy-app/) 2026-08-03T18:33:06,052 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-app/ 2026-08-03T18:33:06,053 Skipping link: not a file: https://pypi.org/simple/galaxy-app/ 2026-08-03T18:33:06,076 Given no hashes to check 1 links for project 'galaxy-app': discarding no candidates 2026-08-03T18:33:06,094 Collecting galaxy-app==26.1.0 2026-08-03T18:33:06,096 Created temporary directory: /tmp/pip-unpack-k95ofjbg 2026-08-03T18:33:06,245 Downloading galaxy_app-26.1.0.tar.gz (2.0 MB) 2026-08-03T18:33:08,345 Added galaxy-app==26.1.0 from https://files.pythonhosted.org/packages/63/c1/757a38896a61c368ad487462787478a18f4b92d201a54e6250bedac1dd87/galaxy_app-26.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-qrd9wylr' 2026-08-03T18:33:08,350 Created temporary directory: /tmp/pip-build-env-upn3dx29 2026-08-03T18:33:08,354 Installing build dependencies: started 2026-08-03T18:33:08,355 Running command pip subprocess to install build dependencies 2026-08-03T18:33:09,489 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-08-03T18:33:09,967 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-03T18:33:09,991 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-03T18:33:11,774 Collecting setuptools 2026-08-03T18:33:11,775 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata 2026-08-03T18:33:11,789 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-08-03T18:33:12,143 Collecting setuptools-scm>=8 2026-08-03T18:33:12,144 Obtaining dependency information for setuptools-scm>=8 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl.metadata 2026-08-03T18:33:12,160 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl.metadata (6.7 kB) 2026-08-03T18:33:12,264 Collecting vcs-versioning<3,>=2.0.0.dev0 2026-08-03T18:33:12,265 Obtaining dependency information for vcs-versioning<3,>=2.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.3-py3-none-any.whl.metadata 2026-08-03T18:33:12,281 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.3-py3-none-any.whl.metadata (1.7 kB) 2026-08-03T18:33:12,462 Collecting packaging>=20 2026-08-03T18:33:12,463 Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata 2026-08-03T18:33:12,476 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 2026-08-03T18:33:12,701 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl (29 kB) 2026-08-03T18:33:12,720 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-08-03T18:33:12,745 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.3-py3-none-any.whl (108 kB) 2026-08-03T18:33:12,829 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-08-03T18:33:12,864 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl (29 kB) 2026-08-03T18:33:12,889 Using cached https://www.piwheels.org/simple/packaging/packaging-26.2-py3-none-any.whl (100 kB) 2026-08-03T18:33:12,917 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.2.3-py3-none-any.whl (108 kB) 2026-08-03T18:33:13,008 Using cached https://www.piwheels.org/simple/setuptools/setuptools-83.0.0-py3-none-any.whl (1.0 MB) 2026-08-03T18:33:15,788 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-08-03T18:33:19,547 Creating /tmp/pip-build-env-upn3dx29/overlay/local/bin 2026-08-03T18:33:19,549 changing mode of /tmp/pip-build-env-upn3dx29/overlay/local/bin/vcs-versioning to 755 2026-08-03T18:33:19,686 changing mode of /tmp/pip-build-env-upn3dx29/overlay/local/bin/setuptools-scm to 755 2026-08-03T18:33:19,714 Successfully installed packaging-26.2 setuptools-83.0.0 setuptools-scm-10.2.1 vcs-versioning-2.2.3 2026-08-03T18:33:20,013 Installing build dependencies: finished with status 'done' 2026-08-03T18:33:20,019 Getting requirements to build wheel: started 2026-08-03T18:33:20,020 Running command Getting requirements to build wheel 2026-08-03T18:33:20,892 running egg_info 2026-08-03T18:33:20,901 writing src/galaxy_app.egg-info/PKG-INFO 2026-08-03T18:33:20,918 writing dependency_links to src/galaxy_app.egg-info/dependency_links.txt 2026-08-03T18:33:20,920 writing entry points to src/galaxy_app.egg-info/entry_points.txt 2026-08-03T18:33:20,923 writing requirements to src/galaxy_app.egg-info/requires.txt 2026-08-03T18:33:20,925 writing top-level names to src/galaxy_app.egg-info/top_level.txt 2026-08-03T18:33:21,060 listing git files failed - pretending there aren't any 2026-08-03T18:33:21,068 reading manifest file 'src/galaxy_app.egg-info/SOURCES.txt' 2026-08-03T18:33:21,181 adding license file 'LICENSE' 2026-08-03T18:33:21,216 writing manifest file 'src/galaxy_app.egg-info/SOURCES.txt' 2026-08-03T18:33:21,323 Getting requirements to build wheel: finished with status 'done' 2026-08-03T18:33:21,327 Created temporary directory: /tmp/pip-modern-metadata-9gttvuef 2026-08-03T18:33:21,329 Preparing metadata (pyproject.toml): started 2026-08-03T18:33:21,330 Running command Preparing metadata (pyproject.toml) 2026-08-03T18:33:22,101 running dist_info 2026-08-03T18:33:22,103 creating /tmp/pip-modern-metadata-9gttvuef/galaxy_app.egg-info 2026-08-03T18:33:22,110 writing /tmp/pip-modern-metadata-9gttvuef/galaxy_app.egg-info/PKG-INFO 2026-08-03T18:33:22,126 writing dependency_links to /tmp/pip-modern-metadata-9gttvuef/galaxy_app.egg-info/dependency_links.txt 2026-08-03T18:33:22,128 writing entry points to /tmp/pip-modern-metadata-9gttvuef/galaxy_app.egg-info/entry_points.txt 2026-08-03T18:33:22,132 writing requirements to /tmp/pip-modern-metadata-9gttvuef/galaxy_app.egg-info/requires.txt 2026-08-03T18:33:22,133 writing top-level names to /tmp/pip-modern-metadata-9gttvuef/galaxy_app.egg-info/top_level.txt 2026-08-03T18:33:22,136 writing manifest file '/tmp/pip-modern-metadata-9gttvuef/galaxy_app.egg-info/SOURCES.txt' 2026-08-03T18:33:22,262 listing git files failed - pretending there aren't any 2026-08-03T18:33:22,271 reading manifest file '/tmp/pip-modern-metadata-9gttvuef/galaxy_app.egg-info/SOURCES.txt' 2026-08-03T18:33:22,273 adding license file 'LICENSE' 2026-08-03T18:33:22,287 writing manifest file '/tmp/pip-modern-metadata-9gttvuef/galaxy_app.egg-info/SOURCES.txt' 2026-08-03T18:33:22,289 creating '/tmp/pip-modern-metadata-9gttvuef/galaxy_app-26.1.0.dist-info' 2026-08-03T18:33:22,430 Preparing metadata (pyproject.toml): finished with status 'done' 2026-08-03T18:33:22,450 Source in /tmp/pip-wheel-6681qp_k/galaxy-app_dcb3696913574c248ecaebcb57c7771a has version 26.1.0, which satisfies requirement galaxy-app==26.1.0 from https://files.pythonhosted.org/packages/63/c1/757a38896a61c368ad487462787478a18f4b92d201a54e6250bedac1dd87/galaxy_app-26.1.0.tar.gz 2026-08-03T18:33:22,451 Removed galaxy-app==26.1.0 from https://files.pythonhosted.org/packages/63/c1/757a38896a61c368ad487462787478a18f4b92d201a54e6250bedac1dd87/galaxy_app-26.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-qrd9wylr' 2026-08-03T18:33:22,488 Created temporary directory: /tmp/pip-unpack-nzhbelyo 2026-08-03T18:33:22,488 Building wheels for collected packages: galaxy-app 2026-08-03T18:33:22,493 Created temporary directory: /tmp/pip-wheel-nc6xclx0 2026-08-03T18:33:22,493 Destination directory: /tmp/pip-wheel-nc6xclx0 2026-08-03T18:33:22,496 Building wheel for galaxy-app (pyproject.toml): started 2026-08-03T18:33:22,497 Running command Building wheel for galaxy-app (pyproject.toml) 2026-08-03T18:33:23,261 running bdist_wheel 2026-08-03T18:33:23,286 running build 2026-08-03T18:33:23,287 running build_py 2026-08-03T18:33:23,288 creating build/lib/galaxy_ext 2026-08-03T18:33:23,290 copying src/galaxy_ext/__init__.py -> build/lib/galaxy_ext 2026-08-03T18:33:23,293 creating build/lib/tool_shed_client 2026-08-03T18:33:23,294 copying src/tool_shed_client/trs_util.py -> build/lib/tool_shed_client 2026-08-03T18:33:23,296 copying src/tool_shed_client/__init__.py -> build/lib/tool_shed_client 2026-08-03T18:33:23,298 creating build/lib/galaxy_ext/expressions 2026-08-03T18:33:23,299 copying src/galaxy_ext/expressions/handle_job.py -> build/lib/galaxy_ext/expressions 2026-08-03T18:33:23,301 copying src/galaxy_ext/expressions/__init__.py -> build/lib/galaxy_ext/expressions 2026-08-03T18:33:23,304 creating build/lib/galaxy_ext/metadata 2026-08-03T18:33:23,304 copying src/galaxy_ext/metadata/set_metadata.py -> build/lib/galaxy_ext/metadata 2026-08-03T18:33:23,306 copying src/galaxy_ext/metadata/__init__.py -> build/lib/galaxy_ext/metadata 2026-08-03T18:33:23,309 creating build/lib/galaxy_ext/container_monitor 2026-08-03T18:33:23,310 copying src/galaxy_ext/container_monitor/monitor.py -> build/lib/galaxy_ext/container_monitor 2026-08-03T18:33:23,312 copying src/galaxy_ext/container_monitor/__init__.py -> build/lib/galaxy_ext/container_monitor 2026-08-03T18:33:23,314 creating build/lib/tool_shed_client/schema 2026-08-03T18:33:23,315 copying src/tool_shed_client/schema/trs_service_info.py -> build/lib/tool_shed_client/schema 2026-08-03T18:33:23,317 copying src/tool_shed_client/schema/trs.py -> build/lib/tool_shed_client/schema 2026-08-03T18:33:23,319 copying src/tool_shed_client/schema/__init__.py -> build/lib/tool_shed_client/schema 2026-08-03T18:33:23,322 creating build/lib/galaxy/webhooks 2026-08-03T18:33:23,324 copying src/galaxy/webhooks/__init__.py -> build/lib/galaxy/webhooks 2026-08-03T18:33:23,326 creating build/lib/galaxy/di 2026-08-03T18:33:23,327 copying src/galaxy/di/__init__.py -> build/lib/galaxy/di 2026-08-03T18:33:23,330 creating build/lib/galaxy/config_watchers 2026-08-03T18:33:23,331 copying src/galaxy/config_watchers/__init__.py -> build/lib/galaxy/config_watchers 2026-08-03T18:33:23,334 creating build/lib/galaxy/agents 2026-08-03T18:33:23,335 copying src/galaxy/agents/history_tools.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,338 copying src/galaxy/agents/factory.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,340 copying src/galaxy/agents/tools.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,343 copying src/galaxy/agents/router.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,346 copying src/galaxy/agents/page_assistant.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,349 copying src/galaxy/agents/registry.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,352 copying src/galaxy/agents/operations.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,355 copying src/galaxy/agents/custom_tool.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,358 copying src/galaxy/agents/history.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,361 copying src/galaxy/agents/workflow_report.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,363 copying src/galaxy/agents/error_analysis.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,366 copying src/galaxy/agents/orchestrator.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,369 copying src/galaxy/agents/iwc.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,372 copying src/galaxy/agents/gtn_training.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,376 copying src/galaxy/agents/static_backend.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,378 copying src/galaxy/agents/__init__.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,381 copying src/galaxy/agents/base.py -> build/lib/galaxy/agents 2026-08-03T18:33:23,385 creating build/lib/galaxy/queues 2026-08-03T18:33:23,386 copying src/galaxy/queues/__init__.py -> build/lib/galaxy/queues 2026-08-03T18:33:23,389 creating build/lib/galaxy/queue_worker 2026-08-03T18:33:23,391 copying src/galaxy/queue_worker/__init__.py -> build/lib/galaxy/queue_worker 2026-08-03T18:33:23,394 creating build/lib/galaxy/dependencies 2026-08-03T18:33:23,395 copying src/galaxy/dependencies/__init__.py -> build/lib/galaxy/dependencies 2026-08-03T18:33:23,398 copying src/galaxy/dependencies/script.py -> build/lib/galaxy/dependencies 2026-08-03T18:33:23,401 creating build/lib/galaxy/structured_app 2026-08-03T18:33:23,403 copying src/galaxy/structured_app/__init__.py -> build/lib/galaxy/structured_app 2026-08-03T18:33:23,406 creating build/lib/galaxy/main_config 2026-08-03T18:33:23,407 copying src/galaxy/main_config/__init__.py -> build/lib/galaxy/main_config 2026-08-03T18:33:23,410 creating build/lib/galaxy/main 2026-08-03T18:33:23,411 copying src/galaxy/main/__init__.py -> build/lib/galaxy/main 2026-08-03T18:33:23,416 creating build/lib/galaxy/managers 2026-08-03T18:33:23,417 copying src/galaxy/managers/licenses.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,420 copying src/galaxy/managers/tours.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,422 copying src/galaxy/managers/library_datasets.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,425 copying src/galaxy/managers/pages.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,429 copying src/galaxy/managers/secured.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,432 copying src/galaxy/managers/agents.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,435 copying src/galaxy/managers/visualizations.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,437 copying src/galaxy/managers/groups.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,440 copying src/galaxy/managers/ratable.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,443 copying src/galaxy/managers/tasks.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,445 copying src/galaxy/managers/hdcas.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,448 copying src/galaxy/managers/tools.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,451 copying src/galaxy/managers/model_stores.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,454 copying src/galaxy/managers/headers_encryption.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,458 copying src/galaxy/managers/deletable.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,460 copying src/galaxy/managers/credentials.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,463 copying src/galaxy/managers/interactivetool.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,466 copying src/galaxy/managers/file_source_instances.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,469 copying src/galaxy/managers/citations.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,473 copying src/galaxy/managers/tags.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,475 copying src/galaxy/managers/landing.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,478 copying src/galaxy/managers/group_users.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,480 copying src/galaxy/managers/lddas.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,482 copying src/galaxy/managers/queue_metrics.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,485 copying src/galaxy/managers/item_tags.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,487 copying src/galaxy/managers/libraries.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,490 copying src/galaxy/managers/genomes.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,492 copying src/galaxy/managers/collections_util.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,495 copying src/galaxy/managers/chat.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,498 copying src/galaxy/managers/markdown_util.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,502 copying src/galaxy/managers/job_connections.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,505 copying src/galaxy/managers/group_roles.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,507 copying src/galaxy/managers/context.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,510 copying src/galaxy/managers/session.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,512 copying src/galaxy/managers/quotas.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,515 copying src/galaxy/managers/history_contents.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,518 copying src/galaxy/managers/workflows.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,523 copying src/galaxy/managers/display_applications.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,526 copying src/galaxy/managers/roles.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,528 copying src/galaxy/managers/hdas.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,532 copying src/galaxy/managers/_config_templates.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,534 copying src/galaxy/managers/remote_files.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,537 copying src/galaxy/managers/folders.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,540 copying src/galaxy/managers/sharable.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,543 copying src/galaxy/managers/tool_data.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,546 copying src/galaxy/managers/taggable.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,548 copying src/galaxy/managers/jobs.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,553 copying src/galaxy/managers/datatypes.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,556 copying src/galaxy/managers/annotatable.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,558 copying src/galaxy/managers/executables.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,561 copying src/galaxy/managers/collections.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,564 copying src/galaxy/managers/sse_dispatch.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,567 copying src/galaxy/managers/notification.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,571 copying src/galaxy/managers/forms.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,573 copying src/galaxy/managers/dbkeys.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,576 copying src/galaxy/managers/__init__.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,579 copying src/galaxy/managers/sse.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,582 copying src/galaxy/managers/history_audit_monitor.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,585 copying src/galaxy/managers/export_tracker.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,587 copying src/galaxy/managers/histories.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,591 copying src/galaxy/managers/configuration.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,594 copying src/galaxy/managers/dataset_storage_operations.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,598 copying src/galaxy/managers/api_keys.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,600 copying src/galaxy/managers/markdown_parse.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,603 copying src/galaxy/managers/rbac_secured.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,605 copying src/galaxy/managers/object_store_instances.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,608 copying src/galaxy/managers/workflow_completion.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,611 copying src/galaxy/managers/datasets.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,614 copying src/galaxy/managers/history_graph.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,618 copying src/galaxy/managers/base.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,621 copying src/galaxy/managers/users.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,625 copying src/galaxy/managers/favorites.py -> build/lib/galaxy/managers 2026-08-03T18:33:23,628 creating build/lib/galaxy/jobs 2026-08-03T18:33:23,630 copying src/galaxy/jobs/rule_helper.py -> build/lib/galaxy/jobs 2026-08-03T18:33:23,633 copying src/galaxy/jobs/dynamic_tool_destination.py -> build/lib/galaxy/jobs 2026-08-03T18:33:23,637 copying src/galaxy/jobs/mapper.py -> build/lib/galaxy/jobs 2026-08-03T18:33:23,640 copying src/galaxy/jobs/handler.py -> build/lib/galaxy/jobs 2026-08-03T18:33:23,644 copying src/galaxy/jobs/manager.py -> build/lib/galaxy/jobs 2026-08-03T18:33:23,647 copying src/galaxy/jobs/stock_rules.py -> build/lib/galaxy/jobs 2026-08-03T18:33:23,649 copying src/galaxy/jobs/__init__.py -> build/lib/galaxy/jobs 2026-08-03T18:33:23,655 copying src/galaxy/jobs/job_destination.py -> build/lib/galaxy/jobs 2026-08-03T18:33:23,657 copying src/galaxy/jobs/command_factory.py -> build/lib/galaxy/jobs 2026-08-03T18:33:23,660 creating build/lib/galaxy/actions 2026-08-03T18:33:23,662 copying src/galaxy/actions/library.py -> build/lib/galaxy/actions 2026-08-03T18:33:23,665 copying src/galaxy/actions/__init__.py -> build/lib/galaxy/actions 2026-08-03T18:33:23,667 creating build/lib/galaxy/authnz 2026-08-03T18:33:23,668 copying src/galaxy/authnz/managers.py -> build/lib/galaxy/authnz 2026-08-03T18:33:23,672 copying src/galaxy/authnz/cilogon.py -> build/lib/galaxy/authnz 2026-08-03T18:33:23,674 copying src/galaxy/authnz/tapis.py -> build/lib/galaxy/authnz 2026-08-03T18:33:23,677 copying src/galaxy/authnz/oidc.py -> build/lib/galaxy/authnz 2026-08-03T18:33:23,679 copying src/galaxy/authnz/util.py -> build/lib/galaxy/authnz 2026-08-03T18:33:23,681 copying src/galaxy/authnz/auth0.py -> build/lib/galaxy/authnz 2026-08-03T18:33:23,683 copying src/galaxy/authnz/__init__.py -> build/lib/galaxy/authnz 2026-08-03T18:33:23,685 copying src/galaxy/authnz/keycloak.py -> build/lib/galaxy/authnz 2026-08-03T18:33:23,687 copying src/galaxy/authnz/oidc_utils.py -> build/lib/galaxy/authnz 2026-08-03T18:33:23,689 copying src/galaxy/authnz/psa_authnz.py -> build/lib/galaxy/authnz 2026-08-03T18:33:23,693 creating build/lib/galaxy/celery 2026-08-03T18:33:23,694 copying src/galaxy/celery/tasks.py -> build/lib/galaxy/celery 2026-08-03T18:33:23,697 copying src/galaxy/celery/helpers.py -> build/lib/galaxy/celery 2026-08-03T18:33:23,699 copying src/galaxy/celery/_serialization.py -> build/lib/galaxy/celery 2026-08-03T18:33:23,701 copying src/galaxy/celery/__init__.py -> build/lib/galaxy/celery 2026-08-03T18:33:23,703 copying src/galaxy/celery/base_task.py -> build/lib/galaxy/celery 2026-08-03T18:33:23,706 creating build/lib/galaxy/carbon_emissions 2026-08-03T18:33:23,707 copying src/galaxy/carbon_emissions/__init__.py -> build/lib/galaxy/carbon_emissions 2026-08-03T18:33:23,710 creating build/lib/galaxy/visualization 2026-08-03T18:33:23,711 copying src/galaxy/visualization/genomes.py -> build/lib/galaxy/visualization 2026-08-03T18:33:23,714 copying src/galaxy/visualization/__init__.py -> build/lib/galaxy/visualization 2026-08-03T18:33:23,716 creating build/lib/galaxy/app 2026-08-03T18:33:23,717 copying src/galaxy/app/__init__.py -> build/lib/galaxy/app 2026-08-03T18:33:23,721 creating build/lib/galaxy/forms 2026-08-03T18:33:23,722 copying src/galaxy/forms/forms.py -> build/lib/galaxy/forms 2026-08-03T18:33:23,725 copying src/galaxy/forms/__init__.py -> build/lib/galaxy/forms 2026-08-03T18:33:23,727 creating build/lib/galaxy/tool_shed 2026-08-03T18:33:23,728 copying src/galaxy/tool_shed/repository_type.py -> build/lib/galaxy/tool_shed 2026-08-03T18:33:23,730 copying src/galaxy/tool_shed/__init__.py -> build/lib/galaxy/tool_shed 2026-08-03T18:33:23,732 copying src/galaxy/tool_shed/cache.py -> build/lib/galaxy/tool_shed 2026-08-03T18:33:23,735 creating build/lib/galaxy/short_term_storage 2026-08-03T18:33:23,736 copying src/galaxy/short_term_storage/__init__.py -> build/lib/galaxy/short_term_storage 2026-08-03T18:33:23,739 creating build/lib/galaxy/tools 2026-08-03T18:33:23,740 copying src/galaxy/tools/runtime.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,743 copying src/galaxy/tools/evaluation.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,746 copying src/galaxy/tools/stock.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,748 copying src/galaxy/tools/remote_tool_eval.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,751 copying src/galaxy/tools/special_tools.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,752 copying src/galaxy/tools/_types.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,754 copying src/galaxy/tools/repositories.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,756 copying src/galaxy/tools/wrappers.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,759 copying src/galaxy/tools/errors.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,761 copying src/galaxy/tools/data_fetch.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,764 copying src/galaxy/tools/biotools.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,766 copying src/galaxy/tools/__init__.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,771 copying src/galaxy/tools/cache.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,774 copying src/galaxy/tools/execute.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,777 copying src/galaxy/tools/data_fetch_utils.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,779 copying src/galaxy/tools/recommendations.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,781 copying src/galaxy/tools/exception_handling.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,783 copying src/galaxy/tools/execution_helpers.py -> build/lib/galaxy/tools 2026-08-03T18:33:23,786 creating build/lib/galaxy/sse_monitor 2026-08-03T18:33:23,787 copying src/galaxy/sse_monitor/__main__.py -> build/lib/galaxy/sse_monitor 2026-08-03T18:33:23,789 copying src/galaxy/sse_monitor/__init__.py -> build/lib/galaxy/sse_monitor 2026-08-03T18:33:23,791 creating build/lib/galaxy/workflow 2026-08-03T18:33:23,792 copying src/galaxy/workflow/render.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,795 copying src/galaxy/workflow/completion_monitor.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,797 copying src/galaxy/workflow/scheduling_manager.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,800 copying src/galaxy/workflow/extract.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,803 copying src/galaxy/workflow/run.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,806 copying src/galaxy/workflow/trs_proxy.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,808 copying src/galaxy/workflow/errors.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,811 copying src/galaxy/workflow/steps.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,813 copying src/galaxy/workflow/__init__.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,814 copying src/galaxy/workflow/workflow_parameter_input_definitions.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,816 copying src/galaxy/workflow/modules.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,822 copying src/galaxy/workflow/run_request.py -> build/lib/galaxy/workflow 2026-08-03T18:33:23,825 creating build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:23,826 copying src/galaxy/app_unittest_utils/galaxy_mock.py -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:23,829 copying src/galaxy/app_unittest_utils/tools_support.py -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:23,832 copying src/galaxy/app_unittest_utils/toolbox_support.py -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:23,834 copying src/galaxy/app_unittest_utils/__init__.py -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:23,836 creating build/lib/galaxy/work 2026-08-03T18:33:23,837 copying src/galaxy/work/context.py -> build/lib/galaxy/work 2026-08-03T18:33:23,840 copying src/galaxy/work/__init__.py -> build/lib/galaxy/work 2026-08-03T18:33:23,842 creating build/lib/galaxy/agents/gtn 2026-08-03T18:33:23,843 copying src/galaxy/agents/gtn/__main__.py -> build/lib/galaxy/agents/gtn 2026-08-03T18:33:23,846 copying src/galaxy/agents/gtn/search.py -> build/lib/galaxy/agents/gtn 2026-08-03T18:33:23,848 copying src/galaxy/agents/gtn/__init__.py -> build/lib/galaxy/agents/gtn 2026-08-03T18:33:23,850 copying src/galaxy/agents/gtn/build_database.py -> build/lib/galaxy/agents/gtn 2026-08-03T18:33:23,854 creating build/lib/galaxy/jobs/rules 2026-08-03T18:33:23,855 copying src/galaxy/jobs/rules/__init__.py -> build/lib/galaxy/jobs/rules 2026-08-03T18:33:23,857 creating build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,858 copying src/galaxy/jobs/runners/htcondor.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,862 copying src/galaxy/jobs/runners/chronos.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,864 copying src/galaxy/jobs/runners/gcp_batch.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,867 copying src/galaxy/jobs/runners/tasks.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,870 copying src/galaxy/jobs/runners/drmaa.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,872 copying src/galaxy/jobs/runners/aws.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,875 copying src/galaxy/jobs/runners/cli.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,878 copying src/galaxy/jobs/runners/pulsar.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,882 copying src/galaxy/jobs/runners/condor.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,884 copying src/galaxy/jobs/runners/local.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,886 copying src/galaxy/jobs/runners/kubernetes.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,890 copying src/galaxy/jobs/runners/htcondor_helper.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,892 copying src/galaxy/jobs/runners/univa.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,895 copying src/galaxy/jobs/runners/pbs.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,897 copying src/galaxy/jobs/runners/state_handler_factory.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,899 copying src/galaxy/jobs/runners/__init__.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,902 copying src/galaxy/jobs/runners/slurm.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,905 copying src/galaxy/jobs/runners/godocker.py -> build/lib/galaxy/jobs/runners 2026-08-03T18:33:23,908 creating build/lib/galaxy/jobs/splitters 2026-08-03T18:33:23,909 copying src/galaxy/jobs/splitters/multi.py -> build/lib/galaxy/jobs/splitters 2026-08-03T18:33:23,912 copying src/galaxy/jobs/splitters/basic.py -> build/lib/galaxy/jobs/splitters 2026-08-03T18:33:23,914 copying src/galaxy/jobs/splitters/__init__.py -> build/lib/galaxy/jobs/splitters 2026-08-03T18:33:23,916 creating build/lib/galaxy/jobs/runners/util 2026-08-03T18:33:23,917 copying src/galaxy/jobs/runners/util/pykube_util.py -> build/lib/galaxy/jobs/runners/util 2026-08-03T18:33:23,920 copying src/galaxy/jobs/runners/util/env.py -> build/lib/galaxy/jobs/runners/util 2026-08-03T18:33:23,922 copying src/galaxy/jobs/runners/util/kill.py -> build/lib/galaxy/jobs/runners/util 2026-08-03T18:33:23,924 copying src/galaxy/jobs/runners/util/sudo.py -> build/lib/galaxy/jobs/runners/util 2026-08-03T18:33:23,926 copying src/galaxy/jobs/runners/util/process_groups.py -> build/lib/galaxy/jobs/runners/util 2026-08-03T18:33:23,928 copying src/galaxy/jobs/runners/util/fork_safe_write.py -> build/lib/galaxy/jobs/runners/util 2026-08-03T18:33:23,930 copying src/galaxy/jobs/runners/util/__init__.py -> build/lib/galaxy/jobs/runners/util 2026-08-03T18:33:23,932 copying src/galaxy/jobs/runners/util/external.py -> build/lib/galaxy/jobs/runners/util 2026-08-03T18:33:23,935 creating build/lib/galaxy/jobs/runners/state_handlers 2026-08-03T18:33:23,936 copying src/galaxy/jobs/runners/state_handlers/resubmit.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-08-03T18:33:23,938 copying src/galaxy/jobs/runners/state_handlers/__init__.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-08-03T18:33:23,940 copying src/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/lib/galaxy/jobs/runners/state_handlers 2026-08-03T18:33:23,943 creating build/lib/galaxy/jobs/runners/util/job_script 2026-08-03T18:33:23,944 copying src/galaxy/jobs/runners/util/job_script/__init__.py -> build/lib/galaxy/jobs/runners/util/job_script 2026-08-03T18:33:23,947 creating build/lib/galaxy/jobs/runners/util/gcp_batch 2026-08-03T18:33:23,948 copying src/galaxy/jobs/runners/util/gcp_batch/helpers.py -> build/lib/galaxy/jobs/runners/util/gcp_batch 2026-08-03T18:33:23,951 copying src/galaxy/jobs/runners/util/gcp_batch/__init__.py -> build/lib/galaxy/jobs/runners/util/gcp_batch 2026-08-03T18:33:23,953 creating build/lib/galaxy/jobs/runners/util/cli 2026-08-03T18:33:23,954 copying src/galaxy/jobs/runners/util/cli/factory.py -> build/lib/galaxy/jobs/runners/util/cli 2026-08-03T18:33:23,956 copying src/galaxy/jobs/runners/util/cli/__init__.py -> build/lib/galaxy/jobs/runners/util/cli 2026-08-03T18:33:23,959 creating build/lib/galaxy/jobs/runners/util/condor 2026-08-03T18:33:23,960 copying src/galaxy/jobs/runners/util/condor/__init__.py -> build/lib/galaxy/jobs/runners/util/condor 2026-08-03T18:33:23,963 creating build/lib/galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:23,964 copying src/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:23,966 copying src/galaxy/jobs/runners/util/cli/job/torque.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:23,968 copying src/galaxy/jobs/runners/util/cli/job/pbs.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:23,970 copying src/galaxy/jobs/runners/util/cli/job/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:23,972 copying src/galaxy/jobs/runners/util/cli/job/lsf.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:23,974 copying src/galaxy/jobs/runners/util/cli/job/slurm.py -> build/lib/galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:23,977 creating build/lib/galaxy/jobs/runners/util/cli/shell 2026-08-03T18:33:23,978 copying src/galaxy/jobs/runners/util/cli/shell/local.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-08-03T18:33:23,980 copying src/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-08-03T18:33:23,982 copying src/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/lib/galaxy/jobs/runners/util/cli/shell 2026-08-03T18:33:23,985 creating build/lib/galaxy/visualization/plugins 2026-08-03T18:33:23,986 copying src/galaxy/visualization/plugins/config_parser.py -> build/lib/galaxy/visualization/plugins 2026-08-03T18:33:23,989 copying src/galaxy/visualization/plugins/plugin.py -> build/lib/galaxy/visualization/plugins 2026-08-03T18:33:23,991 copying src/galaxy/visualization/plugins/resource_parser.py -> build/lib/galaxy/visualization/plugins 2026-08-03T18:33:23,993 copying src/galaxy/visualization/plugins/registry.py -> build/lib/galaxy/visualization/plugins 2026-08-03T18:33:23,996 copying src/galaxy/visualization/plugins/datasource_testing.py -> build/lib/galaxy/visualization/plugins 2026-08-03T18:33:23,998 copying src/galaxy/visualization/plugins/__init__.py -> build/lib/galaxy/visualization/plugins 2026-08-03T18:33:24,000 creating build/lib/galaxy/visualization/data_providers 2026-08-03T18:33:24,001 copying src/galaxy/visualization/data_providers/cigar.py -> build/lib/galaxy/visualization/data_providers 2026-08-03T18:33:24,003 copying src/galaxy/visualization/data_providers/registry.py -> build/lib/galaxy/visualization/data_providers 2026-08-03T18:33:24,006 copying src/galaxy/visualization/data_providers/genome.py -> build/lib/galaxy/visualization/data_providers 2026-08-03T18:33:24,009 copying src/galaxy/visualization/data_providers/basic.py -> build/lib/galaxy/visualization/data_providers 2026-08-03T18:33:24,012 copying src/galaxy/visualization/data_providers/__init__.py -> build/lib/galaxy/visualization/data_providers 2026-08-03T18:33:24,014 creating build/lib/galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:24,015 copying src/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:24,017 copying src/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:24,020 copying src/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:24,022 copying src/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:24,025 copying src/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/lib/galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:24,027 creating build/lib/galaxy/tool_shed/unittest_utils 2026-08-03T18:33:24,028 copying src/galaxy/tool_shed/unittest_utils/__init__.py -> build/lib/galaxy/tool_shed/unittest_utils 2026-08-03T18:33:24,031 creating build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,032 copying src/galaxy/tool_shed/util/container_util.py -> build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,034 copying src/galaxy/tool_shed/util/metadata_util.py -> build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,036 copying src/galaxy/tool_shed/util/dependency_display.py -> build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,038 copying src/galaxy/tool_shed/util/shed_util_common.py -> build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,041 copying src/galaxy/tool_shed/util/hg_util.py -> build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,043 copying src/galaxy/tool_shed/util/tool_util.py -> build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,046 copying src/galaxy/tool_shed/util/basic_util.py -> build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,048 copying src/galaxy/tool_shed/util/__init__.py -> build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,049 copying src/galaxy/tool_shed/util/tool_dependency_util.py -> build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,052 copying src/galaxy/tool_shed/util/repository_util.py -> build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,054 copying src/galaxy/tool_shed/util/utility_container_manager.py -> build/lib/galaxy/tool_shed/util 2026-08-03T18:33:24,058 creating build/lib/galaxy/tool_shed/metadata 2026-08-03T18:33:24,059 copying src/galaxy/tool_shed/metadata/__init__.py -> build/lib/galaxy/tool_shed/metadata 2026-08-03T18:33:24,061 copying src/galaxy/tool_shed/metadata/metadata_generator.py -> build/lib/galaxy/tool_shed/metadata 2026-08-03T18:33:24,064 creating build/lib/galaxy/tool_shed/galaxy_install 2026-08-03T18:33:24,065 copying src/galaxy/tool_shed/galaxy_install/client.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-08-03T18:33:24,067 copying src/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-08-03T18:33:24,071 copying src/galaxy/tool_shed/galaxy_install/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-08-03T18:33:24,072 copying src/galaxy/tool_shed/galaxy_install/install_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-08-03T18:33:24,075 copying src/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/lib/galaxy/tool_shed/galaxy_install 2026-08-03T18:33:24,078 creating build/lib/galaxy/tool_shed/tools 2026-08-03T18:33:24,079 copying src/galaxy/tool_shed/tools/data_table_manager.py -> build/lib/galaxy/tool_shed/tools 2026-08-03T18:33:24,082 copying src/galaxy/tool_shed/tools/tool_validator.py -> build/lib/galaxy/tool_shed/tools 2026-08-03T18:33:24,084 copying src/galaxy/tool_shed/tools/__init__.py -> build/lib/galaxy/tool_shed/tools 2026-08-03T18:33:24,086 creating build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-08-03T18:33:24,088 copying src/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-08-03T18:33:24,090 copying src/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/metadata 2026-08-03T18:33:24,092 creating build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-08-03T18:33:24,093 copying src/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-08-03T18:33:24,097 copying src/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-08-03T18:33:24,099 creating build/lib/galaxy/tool_shed/galaxy_install/tools 2026-08-03T18:33:24,100 copying src/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-08-03T18:33:24,102 copying src/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-08-03T18:33:24,104 copying src/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/lib/galaxy/tool_shed/galaxy_install/tools 2026-08-03T18:33:24,107 creating build/lib/galaxy/tools/search 2026-08-03T18:33:24,108 copying src/galaxy/tools/search/__init__.py -> build/lib/galaxy/tools/search 2026-08-03T18:33:24,111 creating build/lib/galaxy/tools/expressions 2026-08-03T18:33:24,112 copying src/galaxy/tools/expressions/evaluation.py -> build/lib/galaxy/tools/expressions 2026-08-03T18:33:24,114 copying src/galaxy/tools/expressions/util.py -> build/lib/galaxy/tools/expressions 2026-08-03T18:33:24,116 copying src/galaxy/tools/expressions/__init__.py -> build/lib/galaxy/tools/expressions 2026-08-03T18:33:24,118 copying src/galaxy/tools/expressions/script.py -> build/lib/galaxy/tools/expressions 2026-08-03T18:33:24,121 creating build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,122 copying src/galaxy/tools/parameters/wrapped.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,124 copying src/galaxy/tools/parameters/sanitize.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,126 copying src/galaxy/tools/parameters/workflow_utils.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,128 copying src/galaxy/tools/parameters/dataset_matcher.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,131 copying src/galaxy/tools/parameters/meta.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,134 copying src/galaxy/tools/parameters/pagination.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,136 copying src/galaxy/tools/parameters/basic.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,141 copying src/galaxy/tools/parameters/__init__.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,144 copying src/galaxy/tools/parameters/input_translation.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,147 copying src/galaxy/tools/parameters/dynamic_options.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,150 copying src/galaxy/tools/parameters/wrapped_json.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,152 copying src/galaxy/tools/parameters/validation.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,155 copying src/galaxy/tools/parameters/grouping.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,158 copying src/galaxy/tools/parameters/cancelable_request.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,160 copying src/galaxy/tools/parameters/populate_model.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,162 copying src/galaxy/tools/parameters/options.py -> build/lib/galaxy/tools/parameters 2026-08-03T18:33:24,165 creating build/lib/galaxy/tools/data_manager 2026-08-03T18:33:24,166 copying src/galaxy/tools/data_manager/manager.py -> build/lib/galaxy/tools/data_manager 2026-08-03T18:33:24,168 copying src/galaxy/tools/data_manager/__init__.py -> build/lib/galaxy/tools/data_manager 2026-08-03T18:33:24,171 creating build/lib/galaxy/tools/fetch 2026-08-03T18:33:24,172 copying src/galaxy/tools/fetch/__init__.py -> build/lib/galaxy/tools/fetch 2026-08-03T18:33:24,174 copying src/galaxy/tools/fetch/workbooks.py -> build/lib/galaxy/tools/fetch 2026-08-03T18:33:24,177 creating build/lib/galaxy/tools/actions 2026-08-03T18:33:24,178 copying src/galaxy/tools/actions/data_source.py -> build/lib/galaxy/tools/actions 2026-08-03T18:33:24,180 copying src/galaxy/tools/actions/metadata.py -> build/lib/galaxy/tools/actions 2026-08-03T18:33:24,183 copying src/galaxy/tools/actions/upload_common.py -> build/lib/galaxy/tools/actions 2026-08-03T18:33:24,185 copying src/galaxy/tools/actions/upload.py -> build/lib/galaxy/tools/actions 2026-08-03T18:33:24,188 copying src/galaxy/tools/actions/history_imp_exp.py -> build/lib/galaxy/tools/actions 2026-08-03T18:33:24,191 copying src/galaxy/tools/actions/__init__.py -> build/lib/galaxy/tools/actions 2026-08-03T18:33:24,196 copying src/galaxy/tools/actions/data_manager.py -> build/lib/galaxy/tools/actions 2026-08-03T18:33:24,198 copying src/galaxy/tools/actions/model_operations.py -> build/lib/galaxy/tools/actions 2026-08-03T18:33:24,202 creating build/lib/galaxy/tools/util 2026-08-03T18:33:24,203 copying src/galaxy/tools/util/maf_utilities.py -> build/lib/galaxy/tools/util 2026-08-03T18:33:24,207 copying src/galaxy/tools/util/__init__.py -> build/lib/galaxy/tools/util 2026-08-03T18:33:24,210 creating build/lib/galaxy/tools/filters 2026-08-03T18:33:24,212 copying src/galaxy/tools/filters/__init__.py -> build/lib/galaxy/tools/filters 2026-08-03T18:33:24,215 creating build/lib/galaxy/tools/error_reports 2026-08-03T18:33:24,217 copying src/galaxy/tools/error_reports/__init__.py -> build/lib/galaxy/tools/error_reports 2026-08-03T18:33:24,221 creating build/lib/galaxy/tools/data 2026-08-03T18:33:24,223 copying src/galaxy/tools/data/__init__.py -> build/lib/galaxy/tools/data 2026-08-03T18:33:24,227 creating build/lib/galaxy/tools/imp_exp 2026-08-03T18:33:24,229 copying src/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/lib/galaxy/tools/imp_exp 2026-08-03T18:33:24,232 copying src/galaxy/tools/imp_exp/__init__.py -> build/lib/galaxy/tools/imp_exp 2026-08-03T18:33:24,235 copying src/galaxy/tools/imp_exp/export_history.py -> build/lib/galaxy/tools/imp_exp 2026-08-03T18:33:24,239 creating build/lib/galaxy/tools/util/galaxyops 2026-08-03T18:33:24,240 copying src/galaxy/tools/util/galaxyops/__init__.py -> build/lib/galaxy/tools/util/galaxyops 2026-08-03T18:33:24,244 creating build/lib/galaxy/tools/error_reports/plugins 2026-08-03T18:33:24,246 copying src/galaxy/tools/error_reports/plugins/influxdb.py -> build/lib/galaxy/tools/error_reports/plugins 2026-08-03T18:33:24,249 copying src/galaxy/tools/error_reports/plugins/github.py -> build/lib/galaxy/tools/error_reports/plugins 2026-08-03T18:33:24,253 copying src/galaxy/tools/error_reports/plugins/sentry.py -> build/lib/galaxy/tools/error_reports/plugins 2026-08-03T18:33:24,255 copying src/galaxy/tools/error_reports/plugins/gitlab.py -> build/lib/galaxy/tools/error_reports/plugins 2026-08-03T18:33:24,259 copying src/galaxy/tools/error_reports/plugins/json.py -> build/lib/galaxy/tools/error_reports/plugins 2026-08-03T18:33:24,262 copying src/galaxy/tools/error_reports/plugins/__init__.py -> build/lib/galaxy/tools/error_reports/plugins 2026-08-03T18:33:24,265 copying src/galaxy/tools/error_reports/plugins/email.py -> build/lib/galaxy/tools/error_reports/plugins 2026-08-03T18:33:24,268 copying src/galaxy/tools/error_reports/plugins/slack.py -> build/lib/galaxy/tools/error_reports/plugins 2026-08-03T18:33:24,271 copying src/galaxy/tools/error_reports/plugins/base_git.py -> build/lib/galaxy/tools/error_reports/plugins 2026-08-03T18:33:24,274 creating build/lib/galaxy/workflow/refactor 2026-08-03T18:33:24,276 copying src/galaxy/workflow/refactor/__init__.py -> build/lib/galaxy/workflow/refactor 2026-08-03T18:33:24,279 copying src/galaxy/workflow/refactor/execute.py -> build/lib/galaxy/workflow/refactor 2026-08-03T18:33:24,283 copying src/galaxy/workflow/refactor/schema.py -> build/lib/galaxy/workflow/refactor 2026-08-03T18:33:24,287 creating build/lib/galaxy/workflow/completion_hooks 2026-08-03T18:33:24,289 copying src/galaxy/workflow/completion_hooks/export.py -> build/lib/galaxy/workflow/completion_hooks 2026-08-03T18:33:24,291 copying src/galaxy/workflow/completion_hooks/notification.py -> build/lib/galaxy/workflow/completion_hooks 2026-08-03T18:33:24,294 copying src/galaxy/workflow/completion_hooks/__init__.py -> build/lib/galaxy/workflow/completion_hooks 2026-08-03T18:33:24,297 copying src/galaxy/workflow/completion_hooks/base.py -> build/lib/galaxy/workflow/completion_hooks 2026-08-03T18:33:24,299 creating build/lib/galaxy/workflow/resources 2026-08-03T18:33:24,301 copying src/galaxy/workflow/resources/__init__.py -> build/lib/galaxy/workflow/resources 2026-08-03T18:33:24,304 creating build/lib/galaxy/workflow/reports 2026-08-03T18:33:24,305 copying src/galaxy/workflow/reports/__init__.py -> build/lib/galaxy/workflow/reports 2026-08-03T18:33:24,307 creating build/lib/galaxy/workflow/schedulers 2026-08-03T18:33:24,309 copying src/galaxy/workflow/schedulers/core.py -> build/lib/galaxy/workflow/schedulers 2026-08-03T18:33:24,311 copying src/galaxy/workflow/schedulers/__init__.py -> build/lib/galaxy/workflow/schedulers 2026-08-03T18:33:24,313 creating build/lib/galaxy/workflow/reports/generators 2026-08-03T18:33:24,315 copying src/galaxy/workflow/reports/generators/markdown.py -> build/lib/galaxy/workflow/reports/generators 2026-08-03T18:33:24,317 copying src/galaxy/workflow/reports/generators/__init__.py -> build/lib/galaxy/workflow/reports/generators 2026-08-03T18:33:24,320 running egg_info 2026-08-03T18:33:24,328 writing src/galaxy_app.egg-info/PKG-INFO 2026-08-03T18:33:24,344 writing dependency_links to src/galaxy_app.egg-info/dependency_links.txt 2026-08-03T18:33:24,346 writing entry points to src/galaxy_app.egg-info/entry_points.txt 2026-08-03T18:33:24,349 writing requirements to src/galaxy_app.egg-info/requires.txt 2026-08-03T18:33:24,351 writing top-level names to src/galaxy_app.egg-info/top_level.txt 2026-08-03T18:33:24,457 listing git files failed - pretending there aren't any 2026-08-03T18:33:24,465 reading manifest file 'src/galaxy_app.egg-info/SOURCES.txt' 2026-08-03T18:33:24,513 adding license file 'LICENSE' 2026-08-03T18:33:24,549 writing manifest file 'src/galaxy_app.egg-info/SOURCES.txt' 2026-08-03T18:33:24,556 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled' is absent from the `packages` configuration. 2026-08-03T18:33:24,557 !! 2026-08-03T18:33:24,558 ******************************************************************************** 2026-08-03T18:33:24,559 ############################ 2026-08-03T18:33:24,560 # Package would be ignored # 2026-08-03T18:33:24,560 ############################ 2026-08-03T18:33:24,561 Python recognizes 'galaxy.tools.bundled' as an importable package[^1], 2026-08-03T18:33:24,561 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,563 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,563 package, please make sure that 'galaxy.tools.bundled' is explicitly added 2026-08-03T18:33:24,564 to the `packages` configuration field. 2026-08-03T18:33:24,565 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,565 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,566 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,567 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,568 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,569 If you don't want 'galaxy.tools.bundled' to be distributed and are 2026-08-03T18:33:24,570 already explicitly excluding 'galaxy.tools.bundled' via 2026-08-03T18:33:24,571 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,571 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,572 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,573 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,574 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,575 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,576 even if it does not contain any `.py` files. 2026-08-03T18:33:24,576 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,577 directory, all directories are treated like packages. 2026-08-03T18:33:24,577 ******************************************************************************** 2026-08-03T18:33:24,578 !! 2026-08-03T18:33:24,579 check.warn(importable) 2026-08-03T18:33:24,579 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_export' is absent from the `packages` configuration. 2026-08-03T18:33:24,580 !! 2026-08-03T18:33:24,581 ******************************************************************************** 2026-08-03T18:33:24,582 ############################ 2026-08-03T18:33:24,582 # Package would be ignored # 2026-08-03T18:33:24,583 ############################ 2026-08-03T18:33:24,583 Python recognizes 'galaxy.tools.bundled.data_export' as an importable package[^1], 2026-08-03T18:33:24,584 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,585 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,585 package, please make sure that 'galaxy.tools.bundled.data_export' is explicitly added 2026-08-03T18:33:24,586 to the `packages` configuration field. 2026-08-03T18:33:24,587 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,588 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,588 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,589 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,591 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,592 If you don't want 'galaxy.tools.bundled.data_export' to be distributed and are 2026-08-03T18:33:24,593 already explicitly excluding 'galaxy.tools.bundled.data_export' via 2026-08-03T18:33:24,593 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,594 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,595 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,596 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,597 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,599 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,599 even if it does not contain any `.py` files. 2026-08-03T18:33:24,600 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,600 directory, all directories are treated like packages. 2026-08-03T18:33:24,601 ******************************************************************************** 2026-08-03T18:33:24,602 !! 2026-08-03T18:33:24,603 check.warn(importable) 2026-08-03T18:33:24,603 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.data_source' is absent from the `packages` configuration. 2026-08-03T18:33:24,604 !! 2026-08-03T18:33:24,605 ******************************************************************************** 2026-08-03T18:33:24,606 ############################ 2026-08-03T18:33:24,606 # Package would be ignored # 2026-08-03T18:33:24,606 ############################ 2026-08-03T18:33:24,607 Python recognizes 'galaxy.tools.bundled.data_source' as an importable package[^1], 2026-08-03T18:33:24,607 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,608 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,609 package, please make sure that 'galaxy.tools.bundled.data_source' is explicitly added 2026-08-03T18:33:24,609 to the `packages` configuration field. 2026-08-03T18:33:24,610 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,610 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,611 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,612 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,613 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,613 If you don't want 'galaxy.tools.bundled.data_source' to be distributed and are 2026-08-03T18:33:24,614 already explicitly excluding 'galaxy.tools.bundled.data_source' via 2026-08-03T18:33:24,614 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,615 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,616 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,616 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,617 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,619 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,620 even if it does not contain any `.py` files. 2026-08-03T18:33:24,620 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,621 directory, all directories are treated like packages. 2026-08-03T18:33:24,621 ******************************************************************************** 2026-08-03T18:33:24,623 !! 2026-08-03T18:33:24,623 check.warn(importable) 2026-08-03T18:33:24,624 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.expression_tools' is absent from the `packages` configuration. 2026-08-03T18:33:24,625 !! 2026-08-03T18:33:24,626 ******************************************************************************** 2026-08-03T18:33:24,627 ############################ 2026-08-03T18:33:24,627 # Package would be ignored # 2026-08-03T18:33:24,628 ############################ 2026-08-03T18:33:24,629 Python recognizes 'galaxy.tools.bundled.expression_tools' as an importable package[^1], 2026-08-03T18:33:24,629 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,630 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,631 package, please make sure that 'galaxy.tools.bundled.expression_tools' is explicitly added 2026-08-03T18:33:24,631 to the `packages` configuration field. 2026-08-03T18:33:24,632 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,633 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,634 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,635 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,636 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,638 If you don't want 'galaxy.tools.bundled.expression_tools' to be distributed and are 2026-08-03T18:33:24,638 already explicitly excluding 'galaxy.tools.bundled.expression_tools' via 2026-08-03T18:33:24,638 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,639 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,639 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,640 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,641 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,642 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,643 even if it does not contain any `.py` files. 2026-08-03T18:33:24,643 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,644 directory, all directories are treated like packages. 2026-08-03T18:33:24,644 ******************************************************************************** 2026-08-03T18:33:24,645 !! 2026-08-03T18:33:24,645 check.warn(importable) 2026-08-03T18:33:24,646 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.extract' is absent from the `packages` configuration. 2026-08-03T18:33:24,646 !! 2026-08-03T18:33:24,647 ******************************************************************************** 2026-08-03T18:33:24,648 ############################ 2026-08-03T18:33:24,648 # Package would be ignored # 2026-08-03T18:33:24,649 ############################ 2026-08-03T18:33:24,649 Python recognizes 'galaxy.tools.bundled.extract' as an importable package[^1], 2026-08-03T18:33:24,650 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,651 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,651 package, please make sure that 'galaxy.tools.bundled.extract' is explicitly added 2026-08-03T18:33:24,652 to the `packages` configuration field. 2026-08-03T18:33:24,653 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,654 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,654 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,655 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,656 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,657 If you don't want 'galaxy.tools.bundled.extract' to be distributed and are 2026-08-03T18:33:24,658 already explicitly excluding 'galaxy.tools.bundled.extract' via 2026-08-03T18:33:24,658 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,659 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,659 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,660 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,661 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,663 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,664 even if it does not contain any `.py` files. 2026-08-03T18:33:24,664 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,665 directory, all directories are treated like packages. 2026-08-03T18:33:24,666 ******************************************************************************** 2026-08-03T18:33:24,666 !! 2026-08-03T18:33:24,667 check.warn(importable) 2026-08-03T18:33:24,667 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters' is absent from the `packages` configuration. 2026-08-03T18:33:24,668 !! 2026-08-03T18:33:24,668 ******************************************************************************** 2026-08-03T18:33:24,669 ############################ 2026-08-03T18:33:24,669 # Package would be ignored # 2026-08-03T18:33:24,670 ############################ 2026-08-03T18:33:24,670 Python recognizes 'galaxy.tools.bundled.filters' as an importable package[^1], 2026-08-03T18:33:24,671 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,671 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,672 package, please make sure that 'galaxy.tools.bundled.filters' is explicitly added 2026-08-03T18:33:24,672 to the `packages` configuration field. 2026-08-03T18:33:24,673 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,674 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,674 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,675 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,676 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,677 If you don't want 'galaxy.tools.bundled.filters' to be distributed and are 2026-08-03T18:33:24,678 already explicitly excluding 'galaxy.tools.bundled.filters' via 2026-08-03T18:33:24,678 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,679 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,679 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,680 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,681 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,683 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,683 even if it does not contain any `.py` files. 2026-08-03T18:33:24,684 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,684 directory, all directories are treated like packages. 2026-08-03T18:33:24,685 ******************************************************************************** 2026-08-03T18:33:24,686 !! 2026-08-03T18:33:24,686 check.warn(importable) 2026-08-03T18:33:24,687 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.filters.gff' is absent from the `packages` configuration. 2026-08-03T18:33:24,687 !! 2026-08-03T18:33:24,688 ******************************************************************************** 2026-08-03T18:33:24,689 ############################ 2026-08-03T18:33:24,689 # Package would be ignored # 2026-08-03T18:33:24,690 ############################ 2026-08-03T18:33:24,690 Python recognizes 'galaxy.tools.bundled.filters.gff' as an importable package[^1], 2026-08-03T18:33:24,691 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,692 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,693 package, please make sure that 'galaxy.tools.bundled.filters.gff' is explicitly added 2026-08-03T18:33:24,694 to the `packages` configuration field. 2026-08-03T18:33:24,695 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,695 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,696 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,696 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,697 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,698 If you don't want 'galaxy.tools.bundled.filters.gff' to be distributed and are 2026-08-03T18:33:24,698 already explicitly excluding 'galaxy.tools.bundled.filters.gff' via 2026-08-03T18:33:24,699 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,699 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,700 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,700 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,701 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,703 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,703 even if it does not contain any `.py` files. 2026-08-03T18:33:24,703 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,704 directory, all directories are treated like packages. 2026-08-03T18:33:24,704 ******************************************************************************** 2026-08-03T18:33:24,705 !! 2026-08-03T18:33:24,706 check.warn(importable) 2026-08-03T18:33:24,706 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.interactive' is absent from the `packages` configuration. 2026-08-03T18:33:24,706 !! 2026-08-03T18:33:24,707 ******************************************************************************** 2026-08-03T18:33:24,708 ############################ 2026-08-03T18:33:24,708 # Package would be ignored # 2026-08-03T18:33:24,709 ############################ 2026-08-03T18:33:24,709 Python recognizes 'galaxy.tools.bundled.interactive' as an importable package[^1], 2026-08-03T18:33:24,710 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,711 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,711 package, please make sure that 'galaxy.tools.bundled.interactive' is explicitly added 2026-08-03T18:33:24,712 to the `packages` configuration field. 2026-08-03T18:33:24,713 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,713 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,714 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,715 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,716 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,717 If you don't want 'galaxy.tools.bundled.interactive' to be distributed and are 2026-08-03T18:33:24,718 already explicitly excluding 'galaxy.tools.bundled.interactive' via 2026-08-03T18:33:24,718 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,719 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,719 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,720 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,721 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,722 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,723 even if it does not contain any `.py` files. 2026-08-03T18:33:24,723 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,724 directory, all directories are treated like packages. 2026-08-03T18:33:24,724 ******************************************************************************** 2026-08-03T18:33:24,725 !! 2026-08-03T18:33:24,726 check.warn(importable) 2026-08-03T18:33:24,726 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.maf' is absent from the `packages` configuration. 2026-08-03T18:33:24,726 !! 2026-08-03T18:33:24,727 ******************************************************************************** 2026-08-03T18:33:24,728 ############################ 2026-08-03T18:33:24,728 # Package would be ignored # 2026-08-03T18:33:24,729 ############################ 2026-08-03T18:33:24,729 Python recognizes 'galaxy.tools.bundled.maf' as an importable package[^1], 2026-08-03T18:33:24,729 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,730 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,731 package, please make sure that 'galaxy.tools.bundled.maf' is explicitly added 2026-08-03T18:33:24,731 to the `packages` configuration field. 2026-08-03T18:33:24,732 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,733 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,733 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,734 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,735 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,736 If you don't want 'galaxy.tools.bundled.maf' to be distributed and are 2026-08-03T18:33:24,737 already explicitly excluding 'galaxy.tools.bundled.maf' via 2026-08-03T18:33:24,737 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,738 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,738 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,739 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,740 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,742 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,742 even if it does not contain any `.py` files. 2026-08-03T18:33:24,743 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,743 directory, all directories are treated like packages. 2026-08-03T18:33:24,744 ******************************************************************************** 2026-08-03T18:33:24,745 !! 2026-08-03T18:33:24,745 check.warn(importable) 2026-08-03T18:33:24,746 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.meme' is absent from the `packages` configuration. 2026-08-03T18:33:24,746 !! 2026-08-03T18:33:24,748 ******************************************************************************** 2026-08-03T18:33:24,748 ############################ 2026-08-03T18:33:24,749 # Package would be ignored # 2026-08-03T18:33:24,749 ############################ 2026-08-03T18:33:24,750 Python recognizes 'galaxy.tools.bundled.meme' as an importable package[^1], 2026-08-03T18:33:24,750 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,751 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,751 package, please make sure that 'galaxy.tools.bundled.meme' is explicitly added 2026-08-03T18:33:24,752 to the `packages` configuration field. 2026-08-03T18:33:24,752 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,753 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,756 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,757 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,758 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,759 If you don't want 'galaxy.tools.bundled.meme' to be distributed and are 2026-08-03T18:33:24,760 already explicitly excluding 'galaxy.tools.bundled.meme' via 2026-08-03T18:33:24,760 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,760 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,761 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,762 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,763 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,764 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,765 even if it does not contain any `.py` files. 2026-08-03T18:33:24,765 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,766 directory, all directories are treated like packages. 2026-08-03T18:33:24,766 ******************************************************************************** 2026-08-03T18:33:24,767 !! 2026-08-03T18:33:24,768 check.warn(importable) 2026-08-03T18:33:24,768 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.metag_tools' is absent from the `packages` configuration. 2026-08-03T18:33:24,769 !! 2026-08-03T18:33:24,770 ******************************************************************************** 2026-08-03T18:33:24,770 ############################ 2026-08-03T18:33:24,771 # Package would be ignored # 2026-08-03T18:33:24,771 ############################ 2026-08-03T18:33:24,772 Python recognizes 'galaxy.tools.bundled.metag_tools' as an importable package[^1], 2026-08-03T18:33:24,772 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,774 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,774 package, please make sure that 'galaxy.tools.bundled.metag_tools' is explicitly added 2026-08-03T18:33:24,775 to the `packages` configuration field. 2026-08-03T18:33:24,776 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,776 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,777 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,778 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,779 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,780 If you don't want 'galaxy.tools.bundled.metag_tools' to be distributed and are 2026-08-03T18:33:24,780 already explicitly excluding 'galaxy.tools.bundled.metag_tools' via 2026-08-03T18:33:24,781 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,781 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,782 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,782 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,783 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,784 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,785 even if it does not contain any `.py` files. 2026-08-03T18:33:24,785 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,786 directory, all directories are treated like packages. 2026-08-03T18:33:24,786 ******************************************************************************** 2026-08-03T18:33:24,787 !! 2026-08-03T18:33:24,787 check.warn(importable) 2026-08-03T18:33:24,788 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.next_gen_conversion' is absent from the `packages` configuration. 2026-08-03T18:33:24,788 !! 2026-08-03T18:33:24,789 ******************************************************************************** 2026-08-03T18:33:24,790 ############################ 2026-08-03T18:33:24,790 # Package would be ignored # 2026-08-03T18:33:24,791 ############################ 2026-08-03T18:33:24,791 Python recognizes 'galaxy.tools.bundled.next_gen_conversion' as an importable package[^1], 2026-08-03T18:33:24,792 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,793 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,793 package, please make sure that 'galaxy.tools.bundled.next_gen_conversion' is explicitly added 2026-08-03T18:33:24,794 to the `packages` configuration field. 2026-08-03T18:33:24,795 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,795 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,796 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,797 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,798 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,799 If you don't want 'galaxy.tools.bundled.next_gen_conversion' to be distributed and are 2026-08-03T18:33:24,799 already explicitly excluding 'galaxy.tools.bundled.next_gen_conversion' via 2026-08-03T18:33:24,800 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,800 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,801 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,802 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,803 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,804 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,805 even if it does not contain any `.py` files. 2026-08-03T18:33:24,805 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,806 directory, all directories are treated like packages. 2026-08-03T18:33:24,807 ******************************************************************************** 2026-08-03T18:33:24,807 !! 2026-08-03T18:33:24,808 check.warn(importable) 2026-08-03T18:33:24,808 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.ngs_simulation' is absent from the `packages` configuration. 2026-08-03T18:33:24,809 !! 2026-08-03T18:33:24,809 ******************************************************************************** 2026-08-03T18:33:24,810 ############################ 2026-08-03T18:33:24,810 # Package would be ignored # 2026-08-03T18:33:24,811 ############################ 2026-08-03T18:33:24,811 Python recognizes 'galaxy.tools.bundled.ngs_simulation' as an importable package[^1], 2026-08-03T18:33:24,812 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,812 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,813 package, please make sure that 'galaxy.tools.bundled.ngs_simulation' is explicitly added 2026-08-03T18:33:24,813 to the `packages` configuration field. 2026-08-03T18:33:24,814 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,815 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,815 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,816 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,817 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,818 If you don't want 'galaxy.tools.bundled.ngs_simulation' to be distributed and are 2026-08-03T18:33:24,818 already explicitly excluding 'galaxy.tools.bundled.ngs_simulation' via 2026-08-03T18:33:24,819 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,819 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,820 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,821 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,822 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,823 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,824 even if it does not contain any `.py` files. 2026-08-03T18:33:24,824 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,825 directory, all directories are treated like packages. 2026-08-03T18:33:24,825 ******************************************************************************** 2026-08-03T18:33:24,827 !! 2026-08-03T18:33:24,827 check.warn(importable) 2026-08-03T18:33:24,828 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.phenotype_association' is absent from the `packages` configuration. 2026-08-03T18:33:24,829 !! 2026-08-03T18:33:24,830 ******************************************************************************** 2026-08-03T18:33:24,831 ############################ 2026-08-03T18:33:24,831 # Package would be ignored # 2026-08-03T18:33:24,832 ############################ 2026-08-03T18:33:24,833 Python recognizes 'galaxy.tools.bundled.phenotype_association' as an importable package[^1], 2026-08-03T18:33:24,834 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,835 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,835 package, please make sure that 'galaxy.tools.bundled.phenotype_association' is explicitly added 2026-08-03T18:33:24,837 to the `packages` configuration field. 2026-08-03T18:33:24,838 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,839 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,839 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,840 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,842 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,843 If you don't want 'galaxy.tools.bundled.phenotype_association' to be distributed and are 2026-08-03T18:33:24,844 already explicitly excluding 'galaxy.tools.bundled.phenotype_association' via 2026-08-03T18:33:24,844 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,845 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,846 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,847 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,848 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,850 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,850 even if it does not contain any `.py` files. 2026-08-03T18:33:24,851 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,851 directory, all directories are treated like packages. 2026-08-03T18:33:24,852 ******************************************************************************** 2026-08-03T18:33:24,853 !! 2026-08-03T18:33:24,853 check.warn(importable) 2026-08-03T18:33:24,854 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.plotting' is absent from the `packages` configuration. 2026-08-03T18:33:24,854 !! 2026-08-03T18:33:24,855 ******************************************************************************** 2026-08-03T18:33:24,856 ############################ 2026-08-03T18:33:24,856 # Package would be ignored # 2026-08-03T18:33:24,857 ############################ 2026-08-03T18:33:24,857 Python recognizes 'galaxy.tools.bundled.plotting' as an importable package[^1], 2026-08-03T18:33:24,858 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,858 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,859 package, please make sure that 'galaxy.tools.bundled.plotting' is explicitly added 2026-08-03T18:33:24,860 to the `packages` configuration field. 2026-08-03T18:33:24,861 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,861 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,862 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,864 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,865 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,866 If you don't want 'galaxy.tools.bundled.plotting' to be distributed and are 2026-08-03T18:33:24,866 already explicitly excluding 'galaxy.tools.bundled.plotting' via 2026-08-03T18:33:24,867 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,867 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,868 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,869 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,870 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,871 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,872 even if it does not contain any `.py` files. 2026-08-03T18:33:24,872 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,873 directory, all directories are treated like packages. 2026-08-03T18:33:24,873 ******************************************************************************** 2026-08-03T18:33:24,874 !! 2026-08-03T18:33:24,874 check.warn(importable) 2026-08-03T18:33:24,875 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.solid_tools' is absent from the `packages` configuration. 2026-08-03T18:33:24,875 !! 2026-08-03T18:33:24,876 ******************************************************************************** 2026-08-03T18:33:24,876 ############################ 2026-08-03T18:33:24,877 # Package would be ignored # 2026-08-03T18:33:24,877 ############################ 2026-08-03T18:33:24,878 Python recognizes 'galaxy.tools.bundled.solid_tools' as an importable package[^1], 2026-08-03T18:33:24,878 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,879 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,880 package, please make sure that 'galaxy.tools.bundled.solid_tools' is explicitly added 2026-08-03T18:33:24,880 to the `packages` configuration field. 2026-08-03T18:33:24,881 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,882 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,882 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,883 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,884 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,885 If you don't want 'galaxy.tools.bundled.solid_tools' to be distributed and are 2026-08-03T18:33:24,885 already explicitly excluding 'galaxy.tools.bundled.solid_tools' via 2026-08-03T18:33:24,886 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,886 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,887 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,888 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,889 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,890 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,891 even if it does not contain any `.py` files. 2026-08-03T18:33:24,892 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,892 directory, all directories are treated like packages. 2026-08-03T18:33:24,893 ******************************************************************************** 2026-08-03T18:33:24,894 !! 2026-08-03T18:33:24,894 check.warn(importable) 2026-08-03T18:33:24,895 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_assembly' is absent from the `packages` configuration. 2026-08-03T18:33:24,895 !! 2026-08-03T18:33:24,896 ******************************************************************************** 2026-08-03T18:33:24,897 ############################ 2026-08-03T18:33:24,897 # Package would be ignored # 2026-08-03T18:33:24,897 ############################ 2026-08-03T18:33:24,898 Python recognizes 'galaxy.tools.bundled.sr_assembly' as an importable package[^1], 2026-08-03T18:33:24,898 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,899 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,900 package, please make sure that 'galaxy.tools.bundled.sr_assembly' is explicitly added 2026-08-03T18:33:24,900 to the `packages` configuration field. 2026-08-03T18:33:24,901 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,902 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,902 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,903 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,904 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,905 If you don't want 'galaxy.tools.bundled.sr_assembly' to be distributed and are 2026-08-03T18:33:24,905 already explicitly excluding 'galaxy.tools.bundled.sr_assembly' via 2026-08-03T18:33:24,906 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,906 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,907 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,908 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,909 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,910 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,911 even if it does not contain any `.py` files. 2026-08-03T18:33:24,912 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,912 directory, all directories are treated like packages. 2026-08-03T18:33:24,913 ******************************************************************************** 2026-08-03T18:33:24,914 !! 2026-08-03T18:33:24,914 check.warn(importable) 2026-08-03T18:33:24,915 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.sr_mapping' is absent from the `packages` configuration. 2026-08-03T18:33:24,916 !! 2026-08-03T18:33:24,917 ******************************************************************************** 2026-08-03T18:33:24,917 ############################ 2026-08-03T18:33:24,918 # Package would be ignored # 2026-08-03T18:33:24,918 ############################ 2026-08-03T18:33:24,919 Python recognizes 'galaxy.tools.bundled.sr_mapping' as an importable package[^1], 2026-08-03T18:33:24,919 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,920 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,921 package, please make sure that 'galaxy.tools.bundled.sr_mapping' is explicitly added 2026-08-03T18:33:24,922 to the `packages` configuration field. 2026-08-03T18:33:24,922 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,923 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,924 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,925 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,925 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,926 If you don't want 'galaxy.tools.bundled.sr_mapping' to be distributed and are 2026-08-03T18:33:24,927 already explicitly excluding 'galaxy.tools.bundled.sr_mapping' via 2026-08-03T18:33:24,927 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,927 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,928 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,928 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,929 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,931 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,931 even if it does not contain any `.py` files. 2026-08-03T18:33:24,931 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,932 directory, all directories are treated like packages. 2026-08-03T18:33:24,932 ******************************************************************************** 2026-08-03T18:33:24,933 !! 2026-08-03T18:33:24,934 check.warn(importable) 2026-08-03T18:33:24,934 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.bundled.stats' is absent from the `packages` configuration. 2026-08-03T18:33:24,934 !! 2026-08-03T18:33:24,935 ******************************************************************************** 2026-08-03T18:33:24,936 ############################ 2026-08-03T18:33:24,936 # Package would be ignored # 2026-08-03T18:33:24,937 ############################ 2026-08-03T18:33:24,937 Python recognizes 'galaxy.tools.bundled.stats' as an importable package[^1], 2026-08-03T18:33:24,938 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,939 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,939 package, please make sure that 'galaxy.tools.bundled.stats' is explicitly added 2026-08-03T18:33:24,940 to the `packages` configuration field. 2026-08-03T18:33:24,941 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,941 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,942 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,943 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,944 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,945 If you don't want 'galaxy.tools.bundled.stats' to be distributed and are 2026-08-03T18:33:24,945 already explicitly excluding 'galaxy.tools.bundled.stats' via 2026-08-03T18:33:24,946 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,946 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,947 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,948 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,949 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,950 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,951 even if it does not contain any `.py` files. 2026-08-03T18:33:24,952 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,952 directory, all directories are treated like packages. 2026-08-03T18:33:24,953 ******************************************************************************** 2026-08-03T18:33:24,954 !! 2026-08-03T18:33:24,954 check.warn(importable) 2026-08-03T18:33:24,954 /tmp/pip-build-env-upn3dx29/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tools.parameters.test' is absent from the `packages` configuration. 2026-08-03T18:33:24,955 !! 2026-08-03T18:33:24,956 ******************************************************************************** 2026-08-03T18:33:24,956 ############################ 2026-08-03T18:33:24,956 # Package would be ignored # 2026-08-03T18:33:24,957 ############################ 2026-08-03T18:33:24,957 Python recognizes 'galaxy.tools.parameters.test' as an importable package[^1], 2026-08-03T18:33:24,958 but it is absent from setuptools' `packages` configuration. 2026-08-03T18:33:24,958 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-03T18:33:24,959 package, please make sure that 'galaxy.tools.parameters.test' is explicitly added 2026-08-03T18:33:24,959 to the `packages` configuration field. 2026-08-03T18:33:24,960 Alternatively, you can also rely on setuptools' discovery methods 2026-08-03T18:33:24,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-03T18:33:24,961 instead of `find_packages(...)`/`find:`). 2026-08-03T18:33:24,962 You can read more about "package discovery" on setuptools documentation page: 2026-08-03T18:33:24,963 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-03T18:33:24,964 If you don't want 'galaxy.tools.parameters.test' to be distributed and are 2026-08-03T18:33:24,965 already explicitly excluding 'galaxy.tools.parameters.test' via 2026-08-03T18:33:24,965 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-03T18:33:24,966 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-03T18:33:24,967 combination with a more fine grained `package-data` configuration. 2026-08-03T18:33:24,968 You can read more about "package data files" on setuptools documentation page: 2026-08-03T18:33:24,969 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-03T18:33:24,970 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-03T18:33:24,971 even if it does not contain any `.py` files. 2026-08-03T18:33:24,971 On the other hand, currently there is no concept of package data 2026-08-03T18:33:24,972 directory, all directories are treated like packages. 2026-08-03T18:33:24,973 ******************************************************************************** 2026-08-03T18:33:24,974 !! 2026-08-03T18:33:24,974 check.warn(importable) 2026-08-03T18:33:24,975 copying src/galaxy_ext/py.typed -> build/lib/galaxy_ext 2026-08-03T18:33:24,975 copying src/tool_shed_client/py.typed -> build/lib/tool_shed_client 2026-08-03T18:33:24,976 copying src/tool_shed_client/schema/gen.sh -> build/lib/tool_shed_client/schema 2026-08-03T18:33:24,976 copying src/galaxy/webhooks/py.typed -> build/lib/galaxy/webhooks 2026-08-03T18:33:24,977 copying src/galaxy/di/py.typed -> build/lib/galaxy/di 2026-08-03T18:33:24,977 copying src/galaxy/config_watchers/py.typed -> build/lib/galaxy/config_watchers 2026-08-03T18:33:24,978 copying src/galaxy/agents/py.typed -> build/lib/galaxy/agents 2026-08-03T18:33:24,978 copying src/galaxy/queues/py.typed -> build/lib/galaxy/queues 2026-08-03T18:33:24,979 copying src/galaxy/queue_worker/py.typed -> build/lib/galaxy/queue_worker 2026-08-03T18:33:24,979 copying src/galaxy/dependencies/conditional-constraints.txt -> build/lib/galaxy/dependencies 2026-08-03T18:33:24,980 copying src/galaxy/dependencies/conditional-requirements.txt -> build/lib/galaxy/dependencies 2026-08-03T18:33:24,981 copying src/galaxy/dependencies/dev-requirements.txt -> build/lib/galaxy/dependencies 2026-08-03T18:33:24,981 copying src/galaxy/dependencies/lint-requirements.txt -> build/lib/galaxy/dependencies 2026-08-03T18:33:24,982 copying src/galaxy/dependencies/pinned-lint-requirements.txt -> build/lib/galaxy/dependencies 2026-08-03T18:33:24,982 copying src/galaxy/dependencies/pinned-requirements.txt -> build/lib/galaxy/dependencies 2026-08-03T18:33:24,982 copying src/galaxy/dependencies/pinned-test-requirements.txt -> build/lib/galaxy/dependencies 2026-08-03T18:33:24,983 copying src/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/lib/galaxy/dependencies 2026-08-03T18:33:24,983 copying src/galaxy/dependencies/py.typed -> build/lib/galaxy/dependencies 2026-08-03T18:33:24,984 copying src/galaxy/dependencies/update.sh -> build/lib/galaxy/dependencies 2026-08-03T18:33:24,984 copying src/galaxy/dependencies/update_lint_requirements.sh -> build/lib/galaxy/dependencies 2026-08-03T18:33:24,985 copying src/galaxy/structured_app/py.typed -> build/lib/galaxy/structured_app 2026-08-03T18:33:24,985 copying src/galaxy/main_config/py.typed -> build/lib/galaxy/main_config 2026-08-03T18:33:24,986 copying src/galaxy/main/py.typed -> build/lib/galaxy/main 2026-08-03T18:33:24,986 copying src/galaxy/managers/licenses.json -> build/lib/galaxy/managers 2026-08-03T18:33:24,987 copying src/galaxy/managers/markdown_export_base.css -> build/lib/galaxy/managers 2026-08-03T18:33:24,987 copying src/galaxy/managers/py.typed -> build/lib/galaxy/managers 2026-08-03T18:33:24,988 copying src/galaxy/jobs/py.typed -> build/lib/galaxy/jobs 2026-08-03T18:33:24,988 copying src/galaxy/actions/py.typed -> build/lib/galaxy/actions 2026-08-03T18:33:24,989 copying src/galaxy/authnz/py.typed -> build/lib/galaxy/authnz 2026-08-03T18:33:24,989 copying src/galaxy/celery/py.typed -> build/lib/galaxy/celery 2026-08-03T18:33:24,990 copying src/galaxy/carbon_emissions/carbon_intensity.csv -> build/lib/galaxy/carbon_emissions 2026-08-03T18:33:24,990 copying src/galaxy/carbon_emissions/py.typed -> build/lib/galaxy/carbon_emissions 2026-08-03T18:33:24,991 copying src/galaxy/visualization/py.typed -> build/lib/galaxy/visualization 2026-08-03T18:33:24,992 copying src/galaxy/app/py.typed -> build/lib/galaxy/app 2026-08-03T18:33:24,992 copying src/galaxy/forms/py.typed -> build/lib/galaxy/forms 2026-08-03T18:33:24,993 copying src/galaxy/tool_shed/py.typed -> build/lib/galaxy/tool_shed 2026-08-03T18:33:24,993 copying src/galaxy/short_term_storage/py.typed -> build/lib/galaxy/short_term_storage 2026-08-03T18:33:24,994 copying src/galaxy/tools/apply_rules.xml -> build/lib/galaxy/tools 2026-08-03T18:33:24,994 copying src/galaxy/tools/build_list.xml -> build/lib/galaxy/tools 2026-08-03T18:33:24,995 copying src/galaxy/tools/build_list_1.2.0.xml -> build/lib/galaxy/tools 2026-08-03T18:33:24,995 copying src/galaxy/tools/convert_sample_sheet.xml -> build/lib/galaxy/tools 2026-08-03T18:33:24,996 copying src/galaxy/tools/cross_product_flat.xml -> build/lib/galaxy/tools 2026-08-03T18:33:24,996 copying src/galaxy/tools/cross_product_nested.xml -> build/lib/galaxy/tools 2026-08-03T18:33:24,997 copying src/galaxy/tools/data_fetch.xml -> build/lib/galaxy/tools 2026-08-03T18:33:24,997 copying src/galaxy/tools/duplicate_file_to_collection.xml -> build/lib/galaxy/tools 2026-08-03T18:33:24,998 copying src/galaxy/tools/extract_dataset.xml -> build/lib/galaxy/tools 2026-08-03T18:33:24,999 copying src/galaxy/tools/filter_empty_collection.xml -> build/lib/galaxy/tools 2026-08-03T18:33:24,999 copying src/galaxy/tools/filter_empty_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,000 copying src/galaxy/tools/filter_failed_collection.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,000 copying src/galaxy/tools/filter_failed_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,001 copying src/galaxy/tools/filter_from_file.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,001 copying src/galaxy/tools/filter_from_file_1.1.0.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,002 copying src/galaxy/tools/filter_null.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,002 copying src/galaxy/tools/filter_null_1.1.0.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,003 copying src/galaxy/tools/flatten_collection.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,003 copying src/galaxy/tools/harmonize_two_collections_list.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,004 copying src/galaxy/tools/harmonize_two_collections_list_1.0.0.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,004 copying src/galaxy/tools/keep_success_collection.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,004 copying src/galaxy/tools/keep_success_collection_1.1.0.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,005 copying src/galaxy/tools/merge_collection.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,005 copying src/galaxy/tools/model_operation_macros.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,006 copying src/galaxy/tools/nest_collection.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,006 copying src/galaxy/tools/py.typed -> build/lib/galaxy/tools 2026-08-03T18:33:25,007 copying src/galaxy/tools/relabel_from_file.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,007 copying src/galaxy/tools/sample_sheet_to_tabular.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,008 copying src/galaxy/tools/sort_collection_list.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,008 copying src/galaxy/tools/split_paired_and_unpaired.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,009 copying src/galaxy/tools/tag_collection_from_file.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,009 copying src/galaxy/tools/unzip_collection.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,010 copying src/galaxy/tools/zip_collection.xml -> build/lib/galaxy/tools 2026-08-03T18:33:25,010 creating build/lib/galaxy/tools/bundled 2026-08-03T18:33:25,011 copying src/galaxy/tools/bundled/__init__.py -> build/lib/galaxy/tools/bundled 2026-08-03T18:33:25,011 creating build/lib/galaxy/tools/bundled/data_export 2026-08-03T18:33:25,012 copying src/galaxy/tools/bundled/data_export/export_remote.py -> build/lib/galaxy/tools/bundled/data_export 2026-08-03T18:33:25,013 copying src/galaxy/tools/bundled/data_export/export_remote.xml -> build/lib/galaxy/tools/bundled/data_export 2026-08-03T18:33:25,013 creating build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,014 copying src/galaxy/tools/bundled/data_source/__init__.py -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,014 copying src/galaxy/tools/bundled/data_source/access_libraries.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,015 copying src/galaxy/tools/bundled/data_source/biomart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,015 copying src/galaxy/tools/bundled/data_source/biomart_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,016 copying src/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,017 copying src/galaxy/tools/bundled/data_source/data_source.py -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,017 copying src/galaxy/tools/bundled/data_source/diced.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,018 copying src/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,018 copying src/galaxy/tools/bundled/data_source/eupathdb.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,019 copying src/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,019 copying src/galaxy/tools/bundled/data_source/flymine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,020 copying src/galaxy/tools/bundled/data_source/flymine_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,020 copying src/galaxy/tools/bundled/data_source/genbank.py -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,021 copying src/galaxy/tools/bundled/data_source/genbank.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,021 copying src/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,022 copying src/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,022 copying src/galaxy/tools/bundled/data_source/hbvar.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,023 copying src/galaxy/tools/bundled/data_source/import.py -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,023 copying src/galaxy/tools/bundled/data_source/import.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,024 copying src/galaxy/tools/bundled/data_source/intermine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,024 copying src/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,024 copying src/galaxy/tools/bundled/data_source/microbial_import.py -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,025 copying src/galaxy/tools/bundled/data_source/microbial_import.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,025 copying src/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,026 copying src/galaxy/tools/bundled/data_source/modmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,026 copying src/galaxy/tools/bundled/data_source/mousemine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,027 copying src/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,027 copying src/galaxy/tools/bundled/data_source/ratmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,028 copying src/galaxy/tools/bundled/data_source/sra.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,028 copying src/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,029 copying src/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,029 copying src/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,030 copying src/galaxy/tools/bundled/data_source/upload.py -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,030 copying src/galaxy/tools/bundled/data_source/upload.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,031 copying src/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,031 copying src/galaxy/tools/bundled/data_source/wormbase.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,032 copying src/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,032 copying src/galaxy/tools/bundled/data_source/yeastmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,033 copying src/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/lib/galaxy/tools/bundled/data_source 2026-08-03T18:33:25,033 creating build/lib/galaxy/tools/bundled/expression_tools 2026-08-03T18:33:25,034 copying src/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-08-03T18:33:25,034 copying src/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-08-03T18:33:25,035 copying src/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/lib/galaxy/tools/bundled/expression_tools 2026-08-03T18:33:25,036 creating build/lib/galaxy/tools/bundled/extract 2026-08-03T18:33:25,036 copying src/galaxy/tools/bundled/extract/__init__.py -> build/lib/galaxy/tools/bundled/extract 2026-08-03T18:33:25,036 copying src/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/lib/galaxy/tools/bundled/extract 2026-08-03T18:33:25,037 copying src/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/lib/galaxy/tools/bundled/extract 2026-08-03T18:33:25,037 copying src/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/lib/galaxy/tools/bundled/extract 2026-08-03T18:33:25,038 copying src/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/lib/galaxy/tools/bundled/extract 2026-08-03T18:33:25,038 creating build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,038 copying src/galaxy/tools/bundled/filters/CreateInterval.pl -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,039 copying src/galaxy/tools/bundled/filters/CreateInterval.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,042 copying src/galaxy/tools/bundled/filters/__init__.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,044 copying src/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,046 copying src/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,048 copying src/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,050 copying src/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,053 copying src/galaxy/tools/bundled/filters/axt_to_lav.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,056 copying src/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,058 copying src/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,060 copying src/galaxy/tools/bundled/filters/bed2gff.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,063 copying src/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,066 copying src/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,068 copying src/galaxy/tools/bundled/filters/catWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,070 copying src/galaxy/tools/bundled/filters/changeCase.pl -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,073 copying src/galaxy/tools/bundled/filters/changeCase.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,075 copying src/galaxy/tools/bundled/filters/commWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,077 copying src/galaxy/tools/bundled/filters/commWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,080 copying src/galaxy/tools/bundled/filters/compare.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,082 copying src/galaxy/tools/bundled/filters/condense_characters.pl -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,084 copying src/galaxy/tools/bundled/filters/condense_characters.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,087 copying src/galaxy/tools/bundled/filters/convert_characters.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,089 copying src/galaxy/tools/bundled/filters/convert_characters.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,091 copying src/galaxy/tools/bundled/filters/cutWrapper.pl -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,093 copying src/galaxy/tools/bundled/filters/cutWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,096 copying src/galaxy/tools/bundled/filters/fileGrep.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,098 copying src/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,100 copying src/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,102 copying src/galaxy/tools/bundled/filters/gff2bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,105 copying src/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,107 copying src/galaxy/tools/bundled/filters/grep.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,110 copying src/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,112 copying src/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,114 copying src/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,116 copying src/galaxy/tools/bundled/filters/headWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,119 copying src/galaxy/tools/bundled/filters/join.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,121 copying src/galaxy/tools/bundled/filters/joiner.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,124 copying src/galaxy/tools/bundled/filters/joiner2.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,126 copying src/galaxy/tools/bundled/filters/lav_to_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,128 copying src/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,131 copying src/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,133 copying src/galaxy/tools/bundled/filters/mergeCols.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,135 copying src/galaxy/tools/bundled/filters/mergeCols.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,137 copying src/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,139 copying src/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,142 copying src/galaxy/tools/bundled/filters/randomlines.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,144 copying src/galaxy/tools/bundled/filters/randomlines.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,146 copying src/galaxy/tools/bundled/filters/remove_beginning.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,148 copying src/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,151 copying src/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,153 copying src/galaxy/tools/bundled/filters/sff_extract.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,156 copying src/galaxy/tools/bundled/filters/sff_extractor.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,159 copying src/galaxy/tools/bundled/filters/sorter.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,161 copying src/galaxy/tools/bundled/filters/tailWrapper.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,164 copying src/galaxy/tools/bundled/filters/trimmer.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,166 copying src/galaxy/tools/bundled/filters/trimmer.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,169 copying src/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,172 copying src/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,174 copying src/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,177 copying src/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,179 copying src/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,181 copying src/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,183 copying src/galaxy/tools/bundled/filters/uniq.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,186 copying src/galaxy/tools/bundled/filters/uniq.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,188 copying src/galaxy/tools/bundled/filters/wc_gnu.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,190 copying src/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,193 copying src/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,195 copying src/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/lib/galaxy/tools/bundled/filters 2026-08-03T18:33:25,197 creating build/lib/galaxy/tools/bundled/filters/gff 2026-08-03T18:33:25,198 copying src/galaxy/tools/bundled/filters/gff/__init__.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-08-03T18:33:25,200 copying src/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-08-03T18:33:25,202 copying src/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-08-03T18:33:25,205 copying src/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-08-03T18:33:25,208 copying src/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-08-03T18:33:25,210 copying src/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-08-03T18:33:25,214 copying src/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-08-03T18:33:25,216 copying src/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/lib/galaxy/tools/bundled/filters/gff 2026-08-03T18:33:25,219 copying src/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/lib/galaxy/tools/bundled/filters/gff 2026-08-03T18:33:25,221 creating build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,222 copying src/galaxy/tools/bundled/interactive/Rprofile.R -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,224 copying src/galaxy/tools/bundled/interactive/askomics.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,227 copying src/galaxy/tools/bundled/interactive/bam.iobio.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,230 copying src/galaxy/tools/bundled/interactive/bioconductor.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,232 copying src/galaxy/tools/bundled/interactive/blobtoolkit.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,235 copying src/galaxy/tools/bundled/interactive/cellxgene.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,238 copying src/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,240 copying src/galaxy/tools/bundled/interactive/ethercalc.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,243 copying src/galaxy/tools/bundled/interactive/hic.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,245 copying src/galaxy/tools/bundled/interactive/higlass.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,248 copying src/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,250 copying src/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,253 copying src/galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,255 copying src/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,257 copying src/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,260 copying src/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,263 copying src/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,265 copying src/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,267 copying src/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,270 copying src/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,272 copying src/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,275 copying src/galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,278 copying src/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,280 copying src/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,283 copying src/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,286 copying src/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,289 copying src/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.3.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,293 copying src/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,295 copying src/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,298 copying src/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,301 copying src/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,303 copying src/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,306 copying src/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,308 copying src/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,311 copying src/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,313 copying src/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,315 copying src/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,318 copying src/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,321 copying src/galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,324 copying src/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,326 copying src/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,328 copying src/galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,331 copying src/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,333 copying src/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,336 copying src/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,338 copying src/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,341 copying src/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,343 copying src/galaxy/tools/bundled/interactive/jupyter_logo.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,346 copying src/galaxy/tools/bundled/interactive/metashark.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,349 copying src/galaxy/tools/bundled/interactive/neo4j.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,351 copying src/galaxy/tools/bundled/interactive/openrefine.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,354 copying src/galaxy/tools/bundled/interactive/panoply.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,357 copying src/galaxy/tools/bundled/interactive/pavian.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,360 copying src/galaxy/tools/bundled/interactive/phinch.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,362 copying src/galaxy/tools/bundled/interactive/qiskit.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,365 copying src/galaxy/tools/bundled/interactive/simtext_app.R -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,368 copying src/galaxy/tools/bundled/interactive/ubuntu.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,371 copying src/galaxy/tools/bundled/interactive/wallace.png -> build/lib/galaxy/tools/bundled/interactive 2026-08-03T18:33:25,374 creating build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,375 copying src/galaxy/tools/bundled/maf/__init__.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,377 copying src/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,380 copying src/galaxy/tools/bundled/maf/interval2maf.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,383 copying src/galaxy/tools/bundled/maf/interval2maf.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,386 copying src/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,388 copying src/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,391 copying src/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,394 copying src/galaxy/tools/bundled/maf/macros.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,396 copying src/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,399 copying src/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,401 copying src/galaxy/tools/bundled/maf/maf_filter.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,403 copying src/galaxy/tools/bundled/maf/maf_filter.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,406 copying src/galaxy/tools/bundled/maf/maf_limit_size.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,408 copying src/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,411 copying src/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,413 copying src/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,415 copying src/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,417 copying src/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,420 copying src/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,422 copying src/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,425 copying src/galaxy/tools/bundled/maf/maf_stats.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,428 copying src/galaxy/tools/bundled/maf/maf_stats.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,431 copying src/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,433 copying src/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,435 copying src/galaxy/tools/bundled/maf/maf_to_bed.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,438 copying src/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,441 copying src/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,443 copying src/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,446 copying src/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,448 copying src/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,451 copying src/galaxy/tools/bundled/maf/maf_to_interval.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,453 copying src/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,456 copying src/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,458 copying src/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/lib/galaxy/tools/bundled/maf 2026-08-03T18:33:25,461 creating build/lib/galaxy/tools/bundled/meme 2026-08-03T18:33:25,462 copying src/galaxy/tools/bundled/meme/meme.xml -> build/lib/galaxy/tools/bundled/meme 2026-08-03T18:33:25,466 creating build/lib/galaxy/tools/bundled/metag_tools 2026-08-03T18:33:25,467 copying src/galaxy/tools/bundled/metag_tools/__init__.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-08-03T18:33:25,469 copying src/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-08-03T18:33:25,471 copying src/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-08-03T18:33:25,474 copying src/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-08-03T18:33:25,477 copying src/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-08-03T18:33:25,479 copying src/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/lib/galaxy/tools/bundled/metag_tools 2026-08-03T18:33:25,483 copying src/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/lib/galaxy/tools/bundled/metag_tools 2026-08-03T18:33:25,486 creating build/lib/galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:25,487 copying src/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:25,489 copying src/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:25,491 copying src/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:25,494 copying src/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:25,496 copying src/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:25,499 copying src/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:25,502 copying src/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:25,504 copying src/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:25,506 copying src/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/lib/galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:25,509 creating build/lib/galaxy/tools/bundled/ngs_simulation 2026-08-03T18:33:25,510 copying src/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-08-03T18:33:25,512 copying src/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-08-03T18:33:25,515 copying src/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/lib/galaxy/tools/bundled/ngs_simulation 2026-08-03T18:33:25,518 creating build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,519 copying src/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,521 copying src/galaxy/tools/bundled/phenotype_association/__init__.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,523 copying src/galaxy/tools/bundled/phenotype_association/beam.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,526 copying src/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,529 copying src/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,531 copying src/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,534 copying src/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,536 copying src/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,539 copying src/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,541 copying src/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,544 copying src/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,546 copying src/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,549 copying src/galaxy/tools/bundled/phenotype_association/lps.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,552 copying src/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,554 copying src/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,557 copying src/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,560 copying src/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,562 copying src/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,564 copying src/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,567 copying src/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,569 copying src/galaxy/tools/bundled/phenotype_association/pass.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,573 copying src/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,575 copying src/galaxy/tools/bundled/phenotype_association/senatag.py -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,578 copying src/galaxy/tools/bundled/phenotype_association/sift.xml -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,580 copying src/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/lib/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:25,583 creating build/lib/galaxy/tools/bundled/plotting 2026-08-03T18:33:25,584 copying src/galaxy/tools/bundled/plotting/bar_chart.py -> build/lib/galaxy/tools/bundled/plotting 2026-08-03T18:33:25,587 copying src/galaxy/tools/bundled/plotting/bar_chart.xml -> build/lib/galaxy/tools/bundled/plotting 2026-08-03T18:33:25,589 copying src/galaxy/tools/bundled/plotting/boxplot.xml -> build/lib/galaxy/tools/bundled/plotting 2026-08-03T18:33:25,592 creating build/lib/galaxy/tools/bundled/solid_tools 2026-08-03T18:33:25,593 copying src/galaxy/tools/bundled/solid_tools/__init__.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-08-03T18:33:25,595 copying src/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-08-03T18:33:25,598 copying src/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-08-03T18:33:25,601 copying src/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-08-03T18:33:25,603 copying src/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/lib/galaxy/tools/bundled/solid_tools 2026-08-03T18:33:25,605 copying src/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-08-03T18:33:25,608 copying src/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/lib/galaxy/tools/bundled/solid_tools 2026-08-03T18:33:25,610 copying src/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/lib/galaxy/tools/bundled/solid_tools 2026-08-03T18:33:25,613 creating build/lib/galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:25,614 copying src/galaxy/tools/bundled/sr_assembly/__init__.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:25,616 copying src/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:25,619 copying src/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:25,621 copying src/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/lib/galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:25,624 copying src/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/lib/galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:25,626 creating build/lib/galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:25,627 copying src/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:25,630 copying src/galaxy/tools/bundled/sr_mapping/__init__.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:25,633 copying src/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:25,636 copying src/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:25,639 copying src/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:25,641 copying src/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:25,644 copying src/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/lib/galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:25,647 copying src/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/lib/galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:25,649 creating build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,650 copying src/galaxy/tools/bundled/stats/__init__.py -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,652 copying src/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,655 copying src/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,658 copying src/galaxy/tools/bundled/stats/filtering.py -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,661 copying src/galaxy/tools/bundled/stats/filtering.xml -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,664 copying src/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,666 copying src/galaxy/tools/bundled/stats/grouping.py -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,669 copying src/galaxy/tools/bundled/stats/grouping.xml -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,672 copying src/galaxy/tools/bundled/stats/gsummary.py -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,675 copying src/galaxy/tools/bundled/stats/gsummary.xml -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,677 copying src/galaxy/tools/bundled/stats/gsummary.xml.groups -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,680 copying src/galaxy/tools/bundled/stats/r_wrapper.sh -> build/lib/galaxy/tools/bundled/stats 2026-08-03T18:33:25,682 copying src/galaxy/workflow/py.typed -> build/lib/galaxy/workflow 2026-08-03T18:33:25,684 copying src/galaxy/app_unittest_utils/fetch_workbook.csv -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:25,686 copying src/galaxy/app_unittest_utils/fetch_workbook.tsv -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:25,688 copying src/galaxy/app_unittest_utils/fetch_workbook.xlsx -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:25,691 copying src/galaxy/app_unittest_utils/fetch_workbook_list_pairs_without_ids_example.xlsx -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:25,694 copying src/galaxy/app_unittest_utils/fetch_workbook_list_without_ids_example.xlsx -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:25,696 copying src/galaxy/app_unittest_utils/fetch_workbook_paired.xlsx -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:25,699 copying src/galaxy/app_unittest_utils/fetch_workbook_paired_with_hashes.xlsx -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:25,702 copying src/galaxy/app_unittest_utils/py.typed -> build/lib/galaxy/app_unittest_utils 2026-08-03T18:33:25,704 copying src/galaxy/work/py.typed -> build/lib/galaxy/work 2026-08-03T18:33:25,706 creating build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,707 copying src/galaxy/agents/prompts/custom_tool_container_critic.md -> build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,709 copying src/galaxy/agents/prompts/custom_tool_critic.md -> build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,712 copying src/galaxy/agents/prompts/custom_tool_structured.md -> build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,714 copying src/galaxy/agents/prompts/error_analysis.md -> build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,717 copying src/galaxy/agents/prompts/gtn_training.md -> build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,719 copying src/galaxy/agents/prompts/history_analyzer.md -> build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,721 copying src/galaxy/agents/prompts/orchestrator.md -> build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,723 copying src/galaxy/agents/prompts/page_assistant.md -> build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,726 copying src/galaxy/agents/prompts/router.md -> build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,729 copying src/galaxy/agents/prompts/tool_recommendation.md -> build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,732 copying src/galaxy/agents/prompts/workflow_report.md -> build/lib/galaxy/agents/prompts 2026-08-03T18:33:25,734 copying src/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-08-03T18:33:25,737 copying src/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-08-03T18:33:25,739 copying src/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/lib/galaxy/jobs/runners/util/job_script 2026-08-03T18:33:25,742 copying src/galaxy/jobs/runners/util/gcp_batch/container_script.sh -> build/lib/galaxy/jobs/runners/util/gcp_batch 2026-08-03T18:33:25,745 copying src/galaxy/jobs/runners/util/gcp_batch/direct_script.sh -> build/lib/galaxy/jobs/runners/util/gcp_batch 2026-08-03T18:33:25,747 creating build/lib/galaxy/authnz/xsd 2026-08-03T18:33:25,748 copying src/galaxy/authnz/xsd/oidc_backends_config.xsd -> build/lib/galaxy/authnz/xsd 2026-08-03T18:33:25,751 copying src/galaxy/tools/expressions/cwlNodeEngine.js -> build/lib/galaxy/tools/expressions 2026-08-03T18:33:25,753 creating build/lib/galaxy/tools/parameters/test 2026-08-03T18:33:25,754 copying src/galaxy/tools/parameters/test/1.bed -> build/lib/galaxy/tools/parameters/test 2026-08-03T18:33:25,757 copying src/galaxy/tools/parameters/test/1.tabular -> build/lib/galaxy/tools/parameters/test 2026-08-03T18:33:25,759 copying src/galaxy/tools/parameters/test/empty.txt -> build/lib/galaxy/tools/parameters/test 2026-08-03T18:33:25,761 copying src/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/lib/galaxy/tools/imp_exp 2026-08-03T18:33:25,764 copying src/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/lib/galaxy/tools/imp_exp 2026-08-03T18:33:25,766 copying src/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/lib/galaxy/tools/imp_exp 2026-08-03T18:33:25,768 copying src/galaxy/workflow/resources/example.py.sample -> build/lib/galaxy/workflow/resources 2026-08-03T18:33:25,820 installing to build/bdist.linux-armv7l/wheel 2026-08-03T18:33:25,821 running install 2026-08-03T18:33:25,844 running install_lib 2026-08-03T18:33:25,852 creating build/bdist.linux-armv7l/wheel 2026-08-03T18:33:25,855 creating build/bdist.linux-armv7l/wheel/galaxy_ext 2026-08-03T18:33:25,857 creating build/bdist.linux-armv7l/wheel/galaxy_ext/expressions 2026-08-03T18:33:25,859 copying build/lib/galaxy_ext/expressions/handle_job.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2026-08-03T18:33:25,862 copying build/lib/galaxy_ext/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/expressions 2026-08-03T18:33:25,864 creating build/bdist.linux-armv7l/wheel/galaxy_ext/metadata 2026-08-03T18:33:25,865 copying build/lib/galaxy_ext/metadata/set_metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2026-08-03T18:33:25,867 copying build/lib/galaxy_ext/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/metadata 2026-08-03T18:33:25,869 copying build/lib/galaxy_ext/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2026-08-03T18:33:25,871 copying build/lib/galaxy_ext/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy_ext 2026-08-03T18:33:25,873 creating build/bdist.linux-armv7l/wheel/galaxy_ext/container_monitor 2026-08-03T18:33:25,874 copying build/lib/galaxy_ext/container_monitor/monitor.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2026-08-03T18:33:25,876 copying build/lib/galaxy_ext/container_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy_ext/container_monitor 2026-08-03T18:33:25,879 creating build/bdist.linux-armv7l/wheel/tool_shed_client 2026-08-03T18:33:25,880 creating build/bdist.linux-armv7l/wheel/tool_shed_client/schema 2026-08-03T18:33:25,881 copying build/lib/tool_shed_client/schema/trs_service_info.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-08-03T18:33:25,884 copying build/lib/tool_shed_client/schema/trs.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-08-03T18:33:25,886 copying build/lib/tool_shed_client/schema/gen.sh -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-08-03T18:33:25,888 copying build/lib/tool_shed_client/schema/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client/schema 2026-08-03T18:33:25,891 copying build/lib/tool_shed_client/trs_util.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-08-03T18:33:25,893 copying build/lib/tool_shed_client/__init__.py -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-08-03T18:33:25,894 copying build/lib/tool_shed_client/py.typed -> build/bdist.linux-armv7l/wheel/./tool_shed_client 2026-08-03T18:33:25,897 creating build/bdist.linux-armv7l/wheel/galaxy 2026-08-03T18:33:25,898 creating build/bdist.linux-armv7l/wheel/galaxy/webhooks 2026-08-03T18:33:25,900 copying build/lib/galaxy/webhooks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/webhooks 2026-08-03T18:33:25,902 copying build/lib/galaxy/webhooks/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/webhooks 2026-08-03T18:33:25,904 creating build/bdist.linux-armv7l/wheel/galaxy/di 2026-08-03T18:33:25,905 copying build/lib/galaxy/di/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/di 2026-08-03T18:33:25,908 copying build/lib/galaxy/di/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/di 2026-08-03T18:33:25,910 creating build/bdist.linux-armv7l/wheel/galaxy/config_watchers 2026-08-03T18:33:25,911 copying build/lib/galaxy/config_watchers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/config_watchers 2026-08-03T18:33:25,914 copying build/lib/galaxy/config_watchers/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/config_watchers 2026-08-03T18:33:25,916 creating build/bdist.linux-armv7l/wheel/galaxy/agents 2026-08-03T18:33:25,917 copying build/lib/galaxy/agents/history_tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,920 copying build/lib/galaxy/agents/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,923 creating build/bdist.linux-armv7l/wheel/galaxy/agents/prompts 2026-08-03T18:33:25,924 copying build/lib/galaxy/agents/prompts/custom_tool_container_critic.md -> build/bdist.linux-armv7l/wheel/./galaxy/agents/prompts 2026-08-03T18:33:25,926 copying build/lib/galaxy/agents/prompts/error_analysis.md -> build/bdist.linux-armv7l/wheel/./galaxy/agents/prompts 2026-08-03T18:33:25,928 copying build/lib/galaxy/agents/prompts/tool_recommendation.md -> build/bdist.linux-armv7l/wheel/./galaxy/agents/prompts 2026-08-03T18:33:25,930 copying build/lib/galaxy/agents/prompts/history_analyzer.md -> build/bdist.linux-armv7l/wheel/./galaxy/agents/prompts 2026-08-03T18:33:25,932 copying build/lib/galaxy/agents/prompts/gtn_training.md -> build/bdist.linux-armv7l/wheel/./galaxy/agents/prompts 2026-08-03T18:33:25,934 copying build/lib/galaxy/agents/prompts/page_assistant.md -> build/bdist.linux-armv7l/wheel/./galaxy/agents/prompts 2026-08-03T18:33:25,937 copying build/lib/galaxy/agents/prompts/custom_tool_critic.md -> build/bdist.linux-armv7l/wheel/./galaxy/agents/prompts 2026-08-03T18:33:25,939 copying build/lib/galaxy/agents/prompts/router.md -> build/bdist.linux-armv7l/wheel/./galaxy/agents/prompts 2026-08-03T18:33:25,942 copying build/lib/galaxy/agents/prompts/workflow_report.md -> build/bdist.linux-armv7l/wheel/./galaxy/agents/prompts 2026-08-03T18:33:25,944 copying build/lib/galaxy/agents/prompts/orchestrator.md -> build/bdist.linux-armv7l/wheel/./galaxy/agents/prompts 2026-08-03T18:33:25,946 copying build/lib/galaxy/agents/prompts/custom_tool_structured.md -> build/bdist.linux-armv7l/wheel/./galaxy/agents/prompts 2026-08-03T18:33:25,948 copying build/lib/galaxy/agents/tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,952 copying build/lib/galaxy/agents/router.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,955 copying build/lib/galaxy/agents/page_assistant.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,957 copying build/lib/galaxy/agents/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,960 copying build/lib/galaxy/agents/operations.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,963 copying build/lib/galaxy/agents/custom_tool.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,966 copying build/lib/galaxy/agents/history.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,968 copying build/lib/galaxy/agents/workflow_report.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,971 copying build/lib/galaxy/agents/error_analysis.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,973 copying build/lib/galaxy/agents/orchestrator.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,976 copying build/lib/galaxy/agents/iwc.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,978 copying build/lib/galaxy/agents/gtn_training.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,981 copying build/lib/galaxy/agents/static_backend.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,983 copying build/lib/galaxy/agents/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,985 copying build/lib/galaxy/agents/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:25,987 creating build/bdist.linux-armv7l/wheel/galaxy/agents/gtn 2026-08-03T18:33:25,989 copying build/lib/galaxy/agents/gtn/__main__.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents/gtn 2026-08-03T18:33:25,991 copying build/lib/galaxy/agents/gtn/search.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents/gtn 2026-08-03T18:33:25,993 copying build/lib/galaxy/agents/gtn/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents/gtn 2026-08-03T18:33:25,995 copying build/lib/galaxy/agents/gtn/build_database.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents/gtn 2026-08-03T18:33:25,998 copying build/lib/galaxy/agents/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/agents 2026-08-03T18:33:26,002 creating build/bdist.linux-armv7l/wheel/galaxy/queues 2026-08-03T18:33:26,003 copying build/lib/galaxy/queues/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/queues 2026-08-03T18:33:26,005 copying build/lib/galaxy/queues/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/queues 2026-08-03T18:33:26,008 creating build/bdist.linux-armv7l/wheel/galaxy/queue_worker 2026-08-03T18:33:26,009 copying build/lib/galaxy/queue_worker/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/queue_worker 2026-08-03T18:33:26,012 copying build/lib/galaxy/queue_worker/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/queue_worker 2026-08-03T18:33:26,014 creating build/bdist.linux-armv7l/wheel/galaxy/dependencies 2026-08-03T18:33:26,015 copying build/lib/galaxy/dependencies/pinned-typecheck-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,017 copying build/lib/galaxy/dependencies/dev-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,020 copying build/lib/galaxy/dependencies/update_lint_requirements.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,022 copying build/lib/galaxy/dependencies/conditional-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,024 copying build/lib/galaxy/dependencies/conditional-constraints.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,025 copying build/lib/galaxy/dependencies/pinned-lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,027 copying build/lib/galaxy/dependencies/pinned-test-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,030 copying build/lib/galaxy/dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,033 copying build/lib/galaxy/dependencies/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,035 copying build/lib/galaxy/dependencies/update.sh -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,036 copying build/lib/galaxy/dependencies/lint-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,038 copying build/lib/galaxy/dependencies/pinned-requirements.txt -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,040 copying build/lib/galaxy/dependencies/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/dependencies 2026-08-03T18:33:26,043 creating build/bdist.linux-armv7l/wheel/galaxy/structured_app 2026-08-03T18:33:26,044 copying build/lib/galaxy/structured_app/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/structured_app 2026-08-03T18:33:26,046 copying build/lib/galaxy/structured_app/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/structured_app 2026-08-03T18:33:26,048 creating build/bdist.linux-armv7l/wheel/galaxy/main_config 2026-08-03T18:33:26,049 copying build/lib/galaxy/main_config/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/main_config 2026-08-03T18:33:26,052 copying build/lib/galaxy/main_config/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/main_config 2026-08-03T18:33:26,054 creating build/bdist.linux-armv7l/wheel/galaxy/main 2026-08-03T18:33:26,055 copying build/lib/galaxy/main/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/main 2026-08-03T18:33:26,058 copying build/lib/galaxy/main/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/main 2026-08-03T18:33:26,061 creating build/bdist.linux-armv7l/wheel/galaxy/managers 2026-08-03T18:33:26,062 copying build/lib/galaxy/managers/licenses.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,064 copying build/lib/galaxy/managers/tours.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,068 copying build/lib/galaxy/managers/library_datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,071 copying build/lib/galaxy/managers/pages.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,074 copying build/lib/galaxy/managers/secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,077 copying build/lib/galaxy/managers/agents.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,079 copying build/lib/galaxy/managers/visualizations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,081 copying build/lib/galaxy/managers/groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,084 copying build/lib/galaxy/managers/ratable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,087 copying build/lib/galaxy/managers/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,089 copying build/lib/galaxy/managers/hdcas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,091 copying build/lib/galaxy/managers/tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,094 copying build/lib/galaxy/managers/model_stores.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,096 copying build/lib/galaxy/managers/headers_encryption.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,099 copying build/lib/galaxy/managers/deletable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,101 copying build/lib/galaxy/managers/credentials.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,103 copying build/lib/galaxy/managers/interactivetool.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,106 copying build/lib/galaxy/managers/file_source_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,109 copying build/lib/galaxy/managers/citations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,111 copying build/lib/galaxy/managers/tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,113 copying build/lib/galaxy/managers/landing.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,115 copying build/lib/galaxy/managers/group_users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,117 copying build/lib/galaxy/managers/lddas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,119 copying build/lib/galaxy/managers/queue_metrics.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,121 copying build/lib/galaxy/managers/item_tags.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,123 copying build/lib/galaxy/managers/libraries.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,126 copying build/lib/galaxy/managers/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,128 copying build/lib/galaxy/managers/collections_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,131 copying build/lib/galaxy/managers/chat.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,135 copying build/lib/galaxy/managers/markdown_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,138 copying build/lib/galaxy/managers/job_connections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,140 copying build/lib/galaxy/managers/group_roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,142 copying build/lib/galaxy/managers/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,144 copying build/lib/galaxy/managers/session.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,146 copying build/lib/galaxy/managers/quotas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,149 copying build/lib/galaxy/managers/history_contents.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,152 copying build/lib/galaxy/managers/workflows.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,156 copying build/lib/galaxy/managers/display_applications.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,158 copying build/lib/galaxy/managers/roles.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,160 copying build/lib/galaxy/managers/hdas.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,164 copying build/lib/galaxy/managers/_config_templates.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,166 copying build/lib/galaxy/managers/remote_files.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,169 copying build/lib/galaxy/managers/folders.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,172 copying build/lib/galaxy/managers/sharable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,175 copying build/lib/galaxy/managers/tool_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,177 copying build/lib/galaxy/managers/taggable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,179 copying build/lib/galaxy/managers/jobs.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,185 copying build/lib/galaxy/managers/datatypes.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,187 copying build/lib/galaxy/managers/annotatable.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,190 copying build/lib/galaxy/managers/executables.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,192 copying build/lib/galaxy/managers/collections.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,195 copying build/lib/galaxy/managers/sse_dispatch.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,198 copying build/lib/galaxy/managers/notification.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,201 copying build/lib/galaxy/managers/markdown_export_base.css -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,203 copying build/lib/galaxy/managers/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,205 copying build/lib/galaxy/managers/dbkeys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,207 copying build/lib/galaxy/managers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,209 copying build/lib/galaxy/managers/sse.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,212 copying build/lib/galaxy/managers/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,213 copying build/lib/galaxy/managers/history_audit_monitor.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,216 copying build/lib/galaxy/managers/export_tracker.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,218 copying build/lib/galaxy/managers/histories.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,221 copying build/lib/galaxy/managers/licenses.json -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,227 copying build/lib/galaxy/managers/configuration.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,229 copying build/lib/galaxy/managers/dataset_storage_operations.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,233 copying build/lib/galaxy/managers/api_keys.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,235 copying build/lib/galaxy/managers/markdown_parse.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,238 copying build/lib/galaxy/managers/rbac_secured.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,240 copying build/lib/galaxy/managers/object_store_instances.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,243 copying build/lib/galaxy/managers/workflow_completion.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,245 copying build/lib/galaxy/managers/datasets.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,249 copying build/lib/galaxy/managers/history_graph.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,252 copying build/lib/galaxy/managers/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,256 copying build/lib/galaxy/managers/users.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,259 copying build/lib/galaxy/managers/favorites.py -> build/bdist.linux-armv7l/wheel/./galaxy/managers 2026-08-03T18:33:26,262 creating build/bdist.linux-armv7l/wheel/galaxy/jobs 2026-08-03T18:33:26,263 copying build/lib/galaxy/jobs/rule_helper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-08-03T18:33:26,266 copying build/lib/galaxy/jobs/dynamic_tool_destination.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-08-03T18:33:26,271 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/rules 2026-08-03T18:33:26,272 copying build/lib/galaxy/jobs/rules/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/rules 2026-08-03T18:33:26,274 copying build/lib/galaxy/jobs/mapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-08-03T18:33:26,276 copying build/lib/galaxy/jobs/handler.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-08-03T18:33:26,281 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners 2026-08-03T18:33:26,282 copying build/lib/galaxy/jobs/runners/htcondor.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,285 copying build/lib/galaxy/jobs/runners/chronos.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,288 copying build/lib/galaxy/jobs/runners/gcp_batch.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,291 copying build/lib/galaxy/jobs/runners/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,294 copying build/lib/galaxy/jobs/runners/drmaa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,298 copying build/lib/galaxy/jobs/runners/aws.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,301 copying build/lib/galaxy/jobs/runners/cli.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,304 copying build/lib/galaxy/jobs/runners/pulsar.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,307 copying build/lib/galaxy/jobs/runners/condor.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,310 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util 2026-08-03T18:33:26,312 copying build/lib/galaxy/jobs/runners/util/pykube_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-08-03T18:33:26,314 copying build/lib/galaxy/jobs/runners/util/env.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-08-03T18:33:26,316 copying build/lib/galaxy/jobs/runners/util/kill.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-08-03T18:33:26,318 copying build/lib/galaxy/jobs/runners/util/sudo.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-08-03T18:33:26,321 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/job_script 2026-08-03T18:33:26,322 copying build/lib/galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-08-03T18:33:26,324 copying build/lib/galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-08-03T18:33:26,327 copying build/lib/galaxy/jobs/runners/util/job_script/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-08-03T18:33:26,329 copying build/lib/galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/job_script 2026-08-03T18:33:26,332 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/gcp_batch 2026-08-03T18:33:26,333 copying build/lib/galaxy/jobs/runners/util/gcp_batch/direct_script.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/gcp_batch 2026-08-03T18:33:26,335 copying build/lib/galaxy/jobs/runners/util/gcp_batch/helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/gcp_batch 2026-08-03T18:33:26,337 copying build/lib/galaxy/jobs/runners/util/gcp_batch/container_script.sh -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/gcp_batch 2026-08-03T18:33:26,340 copying build/lib/galaxy/jobs/runners/util/gcp_batch/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/gcp_batch 2026-08-03T18:33:26,342 copying build/lib/galaxy/jobs/runners/util/process_groups.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-08-03T18:33:26,344 copying build/lib/galaxy/jobs/runners/util/fork_safe_write.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-08-03T18:33:26,345 copying build/lib/galaxy/jobs/runners/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-08-03T18:33:26,348 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli 2026-08-03T18:33:26,349 copying build/lib/galaxy/jobs/runners/util/cli/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2026-08-03T18:33:26,352 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:26,353 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm_torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:26,355 copying build/lib/galaxy/jobs/runners/util/cli/job/torque.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:26,357 copying build/lib/galaxy/jobs/runners/util/cli/job/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:26,358 copying build/lib/galaxy/jobs/runners/util/cli/job/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:26,360 copying build/lib/galaxy/jobs/runners/util/cli/job/lsf.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:26,363 copying build/lib/galaxy/jobs/runners/util/cli/job/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/job 2026-08-03T18:33:26,366 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/cli/shell 2026-08-03T18:33:26,367 copying build/lib/galaxy/jobs/runners/util/cli/shell/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-08-03T18:33:26,369 copying build/lib/galaxy/jobs/runners/util/cli/shell/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-08-03T18:33:26,371 copying build/lib/galaxy/jobs/runners/util/cli/shell/rsh.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli/shell 2026-08-03T18:33:26,373 copying build/lib/galaxy/jobs/runners/util/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/cli 2026-08-03T18:33:26,376 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/util/condor 2026-08-03T18:33:26,377 copying build/lib/galaxy/jobs/runners/util/condor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util/condor 2026-08-03T18:33:26,379 copying build/lib/galaxy/jobs/runners/util/external.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/util 2026-08-03T18:33:26,381 copying build/lib/galaxy/jobs/runners/local.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,384 copying build/lib/galaxy/jobs/runners/kubernetes.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,388 copying build/lib/galaxy/jobs/runners/htcondor_helper.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,390 copying build/lib/galaxy/jobs/runners/univa.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,393 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/runners/state_handlers 2026-08-03T18:33:26,395 copying build/lib/galaxy/jobs/runners/state_handlers/resubmit.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-08-03T18:33:26,397 copying build/lib/galaxy/jobs/runners/state_handlers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-08-03T18:33:26,399 copying build/lib/galaxy/jobs/runners/state_handlers/_safe_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners/state_handlers 2026-08-03T18:33:26,401 copying build/lib/galaxy/jobs/runners/pbs.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,404 copying build/lib/galaxy/jobs/runners/state_handler_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,406 copying build/lib/galaxy/jobs/runners/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,409 copying build/lib/galaxy/jobs/runners/slurm.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,412 copying build/lib/galaxy/jobs/runners/godocker.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/runners 2026-08-03T18:33:26,414 copying build/lib/galaxy/jobs/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-08-03T18:33:26,417 copying build/lib/galaxy/jobs/stock_rules.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-08-03T18:33:26,419 copying build/lib/galaxy/jobs/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-08-03T18:33:26,423 copying build/lib/galaxy/jobs/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-08-03T18:33:26,425 copying build/lib/galaxy/jobs/job_destination.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-08-03T18:33:26,427 copying build/lib/galaxy/jobs/command_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs 2026-08-03T18:33:26,430 creating build/bdist.linux-armv7l/wheel/galaxy/jobs/splitters 2026-08-03T18:33:26,431 copying build/lib/galaxy/jobs/splitters/multi.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-08-03T18:33:26,434 copying build/lib/galaxy/jobs/splitters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-08-03T18:33:26,436 copying build/lib/galaxy/jobs/splitters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/jobs/splitters 2026-08-03T18:33:26,438 creating build/bdist.linux-armv7l/wheel/galaxy/actions 2026-08-03T18:33:26,439 copying build/lib/galaxy/actions/library.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2026-08-03T18:33:26,442 copying build/lib/galaxy/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2026-08-03T18:33:26,444 copying build/lib/galaxy/actions/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/actions 2026-08-03T18:33:26,446 creating build/bdist.linux-armv7l/wheel/galaxy/authnz 2026-08-03T18:33:26,447 copying build/lib/galaxy/authnz/managers.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-08-03T18:33:26,450 copying build/lib/galaxy/authnz/cilogon.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-08-03T18:33:26,452 copying build/lib/galaxy/authnz/tapis.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-08-03T18:33:26,454 copying build/lib/galaxy/authnz/oidc.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-08-03T18:33:26,456 copying build/lib/galaxy/authnz/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-08-03T18:33:26,458 copying build/lib/galaxy/authnz/auth0.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-08-03T18:33:26,461 creating build/bdist.linux-armv7l/wheel/galaxy/authnz/xsd 2026-08-03T18:33:26,462 copying build/lib/galaxy/authnz/xsd/oidc_backends_config.xsd -> build/bdist.linux-armv7l/wheel/./galaxy/authnz/xsd 2026-08-03T18:33:26,465 copying build/lib/galaxy/authnz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-08-03T18:33:26,467 copying build/lib/galaxy/authnz/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-08-03T18:33:26,469 copying build/lib/galaxy/authnz/keycloak.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-08-03T18:33:26,471 copying build/lib/galaxy/authnz/oidc_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-08-03T18:33:26,473 copying build/lib/galaxy/authnz/psa_authnz.py -> build/bdist.linux-armv7l/wheel/./galaxy/authnz 2026-08-03T18:33:26,477 creating build/bdist.linux-armv7l/wheel/galaxy/celery 2026-08-03T18:33:26,479 copying build/lib/galaxy/celery/tasks.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-08-03T18:33:26,482 copying build/lib/galaxy/celery/helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-08-03T18:33:26,484 copying build/lib/galaxy/celery/_serialization.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-08-03T18:33:26,486 copying build/lib/galaxy/celery/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-08-03T18:33:26,488 copying build/lib/galaxy/celery/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-08-03T18:33:26,490 copying build/lib/galaxy/celery/base_task.py -> build/bdist.linux-armv7l/wheel/./galaxy/celery 2026-08-03T18:33:26,493 creating build/bdist.linux-armv7l/wheel/galaxy/carbon_emissions 2026-08-03T18:33:26,494 copying build/lib/galaxy/carbon_emissions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2026-08-03T18:33:26,496 copying build/lib/galaxy/carbon_emissions/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2026-08-03T18:33:26,497 copying build/lib/galaxy/carbon_emissions/carbon_intensity.csv -> build/bdist.linux-armv7l/wheel/./galaxy/carbon_emissions 2026-08-03T18:33:26,501 creating build/bdist.linux-armv7l/wheel/galaxy/visualization 2026-08-03T18:33:26,502 copying build/lib/galaxy/visualization/genomes.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2026-08-03T18:33:26,506 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/plugins 2026-08-03T18:33:26,507 copying build/lib/galaxy/visualization/plugins/config_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-08-03T18:33:26,510 copying build/lib/galaxy/visualization/plugins/plugin.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-08-03T18:33:26,513 copying build/lib/galaxy/visualization/plugins/resource_parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-08-03T18:33:26,516 copying build/lib/galaxy/visualization/plugins/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-08-03T18:33:26,519 copying build/lib/galaxy/visualization/plugins/datasource_testing.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-08-03T18:33:26,521 copying build/lib/galaxy/visualization/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/plugins 2026-08-03T18:33:26,522 copying build/lib/galaxy/visualization/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2026-08-03T18:33:26,524 copying build/lib/galaxy/visualization/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/visualization 2026-08-03T18:33:26,526 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers 2026-08-03T18:33:26,528 creating build/bdist.linux-armv7l/wheel/galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:26,530 copying build/lib/galaxy/visualization/data_providers/phyloviz/nexusparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:26,532 copying build/lib/galaxy/visualization/data_providers/phyloviz/newickparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:26,534 copying build/lib/galaxy/visualization/data_providers/phyloviz/baseparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:26,537 copying build/lib/galaxy/visualization/data_providers/phyloviz/phyloxmlparser.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:26,539 copying build/lib/galaxy/visualization/data_providers/phyloviz/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers/phyloviz 2026-08-03T18:33:26,541 copying build/lib/galaxy/visualization/data_providers/cigar.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-08-03T18:33:26,543 copying build/lib/galaxy/visualization/data_providers/registry.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-08-03T18:33:26,546 copying build/lib/galaxy/visualization/data_providers/genome.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-08-03T18:33:26,550 copying build/lib/galaxy/visualization/data_providers/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-08-03T18:33:26,552 copying build/lib/galaxy/visualization/data_providers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/visualization/data_providers 2026-08-03T18:33:26,555 creating build/bdist.linux-armv7l/wheel/galaxy/app 2026-08-03T18:33:26,556 copying build/lib/galaxy/app/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/app 2026-08-03T18:33:26,560 copying build/lib/galaxy/app/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/app 2026-08-03T18:33:26,562 creating build/bdist.linux-armv7l/wheel/galaxy/forms 2026-08-03T18:33:26,563 copying build/lib/galaxy/forms/forms.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2026-08-03T18:33:26,566 copying build/lib/galaxy/forms/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2026-08-03T18:33:26,568 copying build/lib/galaxy/forms/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/forms 2026-08-03T18:33:26,570 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed 2026-08-03T18:33:26,572 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/unittest_utils 2026-08-03T18:33:26,573 copying build/lib/galaxy/tool_shed/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/unittest_utils 2026-08-03T18:33:26,575 copying build/lib/galaxy/tool_shed/repository_type.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-08-03T18:33:26,578 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/util 2026-08-03T18:33:26,579 copying build/lib/galaxy/tool_shed/util/container_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-08-03T18:33:26,581 copying build/lib/galaxy/tool_shed/util/metadata_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-08-03T18:33:26,583 copying build/lib/galaxy/tool_shed/util/dependency_display.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-08-03T18:33:26,586 copying build/lib/galaxy/tool_shed/util/shed_util_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-08-03T18:33:26,589 copying build/lib/galaxy/tool_shed/util/hg_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-08-03T18:33:26,591 copying build/lib/galaxy/tool_shed/util/tool_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-08-03T18:33:26,594 copying build/lib/galaxy/tool_shed/util/basic_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-08-03T18:33:26,596 copying build/lib/galaxy/tool_shed/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-08-03T18:33:26,597 copying build/lib/galaxy/tool_shed/util/tool_dependency_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-08-03T18:33:26,600 copying build/lib/galaxy/tool_shed/util/repository_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-08-03T18:33:26,603 copying build/lib/galaxy/tool_shed/util/utility_container_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/util 2026-08-03T18:33:26,607 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/metadata 2026-08-03T18:33:26,608 copying build/lib/galaxy/tool_shed/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2026-08-03T18:33:26,610 copying build/lib/galaxy/tool_shed/metadata/metadata_generator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/metadata 2026-08-03T18:33:26,615 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install 2026-08-03T18:33:26,616 copying build/lib/galaxy/tool_shed/galaxy_install/client.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-08-03T18:33:26,618 copying build/lib/galaxy/tool_shed/galaxy_install/installed_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-08-03T18:33:26,622 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/metadata 2026-08-03T18:33:26,623 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2026-08-03T18:33:26,626 copying build/lib/galaxy/tool_shed/galaxy_install/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/metadata 2026-08-03T18:33:26,627 copying build/lib/galaxy/tool_shed/galaxy_install/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-08-03T18:33:26,629 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/repository_dependencies 2026-08-03T18:33:26,630 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2026-08-03T18:33:26,634 copying build/lib/galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/repository_dependencies 2026-08-03T18:33:26,636 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/galaxy_install/tools 2026-08-03T18:33:26,637 copying build/lib/galaxy/tool_shed/galaxy_install/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-08-03T18:33:26,638 copying build/lib/galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-08-03T18:33:26,641 copying build/lib/galaxy/tool_shed/galaxy_install/tools/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install/tools 2026-08-03T18:33:26,643 copying build/lib/galaxy/tool_shed/galaxy_install/install_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-08-03T18:33:26,647 copying build/lib/galaxy/tool_shed/galaxy_install/update_repository_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/galaxy_install 2026-08-03T18:33:26,649 copying build/lib/galaxy/tool_shed/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-08-03T18:33:26,650 copying build/lib/galaxy/tool_shed/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-08-03T18:33:26,652 copying build/lib/galaxy/tool_shed/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed 2026-08-03T18:33:26,654 creating build/bdist.linux-armv7l/wheel/galaxy/tool_shed/tools 2026-08-03T18:33:26,655 copying build/lib/galaxy/tool_shed/tools/data_table_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-08-03T18:33:26,657 copying build/lib/galaxy/tool_shed/tools/tool_validator.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-08-03T18:33:26,659 copying build/lib/galaxy/tool_shed/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_shed/tools 2026-08-03T18:33:26,661 creating build/bdist.linux-armv7l/wheel/galaxy/short_term_storage 2026-08-03T18:33:26,662 copying build/lib/galaxy/short_term_storage/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/short_term_storage 2026-08-03T18:33:26,665 copying build/lib/galaxy/short_term_storage/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/short_term_storage 2026-08-03T18:33:26,667 creating build/bdist.linux-armv7l/wheel/galaxy/tools 2026-08-03T18:33:26,668 copying build/lib/galaxy/tools/runtime.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:26,671 copying build/lib/galaxy/tools/keep_success_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:26,673 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled 2026-08-03T18:33:26,675 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/expression_tools 2026-08-03T18:33:26,676 copying build/lib/galaxy/tools/bundled/expression_tools/expression_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-08-03T18:33:26,677 copying build/lib/galaxy/tools/bundled/expression_tools/parse_values_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-08-03T18:33:26,679 copying build/lib/galaxy/tools/bundled/expression_tools/pick_value.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/expression_tools 2026-08-03T18:33:26,683 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/maf 2026-08-03T18:33:26,683 copying build/lib/galaxy/tools/bundled/maf/macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,685 copying build/lib/galaxy/tools/bundled/maf/interval2maf_pairwise.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,687 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,689 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,690 copying build/lib/galaxy/tools/bundled/maf/maf_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,693 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,694 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,696 copying build/lib/galaxy/tools/bundled/maf/maf_filter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,698 copying build/lib/galaxy/tools/bundled/maf/maf_filter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,700 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,702 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,704 copying build/lib/galaxy/tools/bundled/maf/maf_by_block_number.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,706 copying build/lib/galaxy/tools/bundled/maf/interval2maf.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,708 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,710 copying build/lib/galaxy/tools/bundled/maf/maf_limit_size.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,712 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,713 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_concat.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,715 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,717 copying build/lib/galaxy/tools/bundled/maf/maf_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,720 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,722 copying build/lib/galaxy/tools/bundled/maf/maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,724 copying build/lib/galaxy/tools/bundled/maf/maf_reverse_complement.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,725 copying build/lib/galaxy/tools/bundled/maf/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,727 copying build/lib/galaxy/tools/bundled/maf/vcf_to_maf_customtrack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,729 copying build/lib/galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,731 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,733 copying build/lib/galaxy/tools/bundled/maf/interval2maf.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,735 copying build/lib/galaxy/tools/bundled/maf/maf_to_interval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,737 copying build/lib/galaxy/tools/bundled/maf/maf_split_by_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,739 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,741 copying build/lib/galaxy/tools/bundled/maf/maf_limit_to_species.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,743 copying build/lib/galaxy/tools/bundled/maf/maf_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,744 copying build/lib/galaxy/tools/bundled/maf/maf_thread_for_species.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,746 copying build/lib/galaxy/tools/bundled/maf/genebed_maf_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/maf 2026-08-03T18:33:26,750 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/interactive 2026-08-03T18:33:26,751 copying build/lib/galaxy/tools/bundled/interactive/bam.iobio.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,753 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_askomics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,755 copying build/lib/galaxy/tools/bundled/interactive/higlass.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,757 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_guacamole_desktop.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,759 copying build/lib/galaxy/tools/bundled/interactive/jupyter_logo.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,762 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_climate_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,764 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_phinch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,766 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_0.16.2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,767 copying build/lib/galaxy/tools/bundled/interactive/hic.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,770 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vrm_editor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,772 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_neo4j.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,773 copying build/lib/galaxy/tools/bundled/interactive/wallace.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,776 copying build/lib/galaxy/tools/bundled/interactive/default_notebook.ipynb -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,778 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_blobtoolkit.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,780 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_vcf_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,782 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wilson.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,783 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_higlass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,786 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_openrefine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,788 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_wallace.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,789 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pavian.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,791 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,794 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_metashark.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,796 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_hicbrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,798 copying build/lib/galaxy/tools/bundled/interactive/bioconductor.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,800 copying build/lib/galaxy/tools/bundled/interactive/neo4j.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,802 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_cellxgene_1.1.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,805 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_paraview.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,807 copying build/lib/galaxy/tools/bundled/interactive/qiskit.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,809 copying build/lib/galaxy/tools/bundled/interactive/cellxgene.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,812 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_panoply.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,814 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pyiron.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,816 copying build/lib/galaxy/tools/bundled/interactive/ethercalc.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,818 copying build/lib/galaxy/tools/bundled/interactive/pavian.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,820 copying build/lib/galaxy/tools/bundled/interactive/askomics.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,823 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_isee.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,825 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,828 copying build/lib/galaxy/tools/bundled/interactive/phinch.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,830 copying build/lib/galaxy/tools/bundled/interactive/panoply.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,832 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_simtext_app.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,834 copying build/lib/galaxy/tools/bundled/interactive/simtext_app.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,837 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ethercalc.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,839 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio_bioc_3.20.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,841 copying build/lib/galaxy/tools/bundled/interactive/Rprofile.R -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,843 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_mgnify_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,845 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_bam_iobio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,847 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,850 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ilastik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,852 copying build/lib/galaxy/tools/bundled/interactive/metashark.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,854 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,856 copying build/lib/galaxy/tools/bundled/interactive/ubuntu.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,859 copying build/lib/galaxy/tools/bundled/interactive/blobtoolkit.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,861 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_ml_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,864 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_geoexplorer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,866 copying build/lib/galaxy/tools/bundled/interactive/openrefine.png -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,869 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,872 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_jupyter_notebook_1.0.3.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,875 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_rstudio.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,877 copying build/lib/galaxy/tools/bundled/interactive/interactivetool_radiant.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/interactive 2026-08-03T18:33:26,879 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/extract 2026-08-03T18:33:26,880 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-08-03T18:33:26,882 copying build/lib/galaxy/tools/bundled/extract/extract_genomic_dna.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-08-03T18:33:26,885 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-08-03T18:33:26,887 copying build/lib/galaxy/tools/bundled/extract/liftOver_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-08-03T18:33:26,889 copying build/lib/galaxy/tools/bundled/extract/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/extract 2026-08-03T18:33:26,891 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_export 2026-08-03T18:33:26,892 copying build/lib/galaxy/tools/bundled/data_export/export_remote.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2026-08-03T18:33:26,894 copying build/lib/galaxy/tools/bundled/data_export/export_remote.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_export 2026-08-03T18:33:26,897 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/stats 2026-08-03T18:33:26,898 copying build/lib/galaxy/tools/bundled/stats/filtering.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,900 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,902 copying build/lib/galaxy/tools/bundled/stats/filtering_1_1_0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,904 copying build/lib/galaxy/tools/bundled/stats/aggregate_scores_in_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,906 copying build/lib/galaxy/tools/bundled/stats/gsummary.xml.groups -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,908 copying build/lib/galaxy/tools/bundled/stats/grouping.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,910 copying build/lib/galaxy/tools/bundled/stats/filtering.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,913 copying build/lib/galaxy/tools/bundled/stats/aggregate_binned_scores_in_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,915 copying build/lib/galaxy/tools/bundled/stats/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,917 copying build/lib/galaxy/tools/bundled/stats/gsummary.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,919 copying build/lib/galaxy/tools/bundled/stats/r_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,921 copying build/lib/galaxy/tools/bundled/stats/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/stats 2026-08-03T18:33:26,925 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,926 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,928 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,930 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,932 copying build/lib/galaxy/tools/bundled/phenotype_association/mergeSnps.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,934 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,936 copying build/lib/galaxy/tools/bundled/phenotype_association/lped_to_geno.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,938 copying build/lib/galaxy/tools/bundled/phenotype_association/pass_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,940 copying build/lib/galaxy/tools/bundled/phenotype_association/pass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,942 copying build/lib/galaxy/tools/bundled/phenotype_association/ldtools_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,944 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToGProfile.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,946 copying build/lib/galaxy/tools/bundled/phenotype_association/lps.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,949 copying build/lib/galaxy/tools/bundled/phenotype_association/gpass.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,951 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,953 copying build/lib/galaxy/tools/bundled/phenotype_association/senatag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,956 copying build/lib/galaxy/tools/bundled/phenotype_association/pagetag.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,959 copying build/lib/galaxy/tools/bundled/phenotype_association/sift.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,961 copying build/lib/galaxy/tools/bundled/phenotype_association/beam.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,964 copying build/lib/galaxy/tools/bundled/phenotype_association/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,966 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,968 copying build/lib/galaxy/tools/bundled/phenotype_association/linkToDavid.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,971 copying build/lib/galaxy/tools/bundled/phenotype_association/master2gd_snp.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,974 copying build/lib/galaxy/tools/bundled/phenotype_association/master2pg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,976 copying build/lib/galaxy/tools/bundled/phenotype_association/BEAM2_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,978 copying build/lib/galaxy/tools/bundled/phenotype_association/lps_tool_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,980 copying build/lib/galaxy/tools/bundled/phenotype_association/sift_variants_wrapper.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/phenotype_association 2026-08-03T18:33:26,984 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/meme 2026-08-03T18:33:26,985 copying build/lib/galaxy/tools/bundled/meme/meme.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/meme 2026-08-03T18:33:26,989 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/plotting 2026-08-03T18:33:26,990 copying build/lib/galaxy/tools/bundled/plotting/boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-08-03T18:33:26,993 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-08-03T18:33:26,997 copying build/lib/galaxy/tools/bundled/plotting/bar_chart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/plotting 2026-08-03T18:33:27,000 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/ngs_simulation 2026-08-03T18:33:27,001 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-08-03T18:33:27,004 copying build/lib/galaxy/tools/bundled/ngs_simulation/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-08-03T18:33:27,006 copying build/lib/galaxy/tools/bundled/ngs_simulation/ngs_simulation.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/ngs_simulation 2026-08-03T18:33:27,009 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:27,011 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:27,014 copying build/lib/galaxy/tools/bundled/sr_mapping/mosaik.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:27,016 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:27,019 copying build/lib/galaxy/tools/bundled/sr_mapping/srma_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:27,022 copying build/lib/galaxy/tools/bundled/sr_mapping/PerM.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:27,025 copying build/lib/galaxy/tools/bundled/sr_mapping/fastq_statistics.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:27,028 copying build/lib/galaxy/tools/bundled/sr_mapping/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:27,030 copying build/lib/galaxy/tools/bundled/sr_mapping/bfast_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_mapping 2026-08-03T18:33:27,033 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:27,034 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:27,037 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:27,040 copying build/lib/galaxy/tools/bundled/sr_assembly/velvetg_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:27,042 copying build/lib/galaxy/tools/bundled/sr_assembly/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:27,044 copying build/lib/galaxy/tools/bundled/sr_assembly/velveth_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/sr_assembly 2026-08-03T18:33:27,047 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/solid_tools 2026-08-03T18:33:27,048 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-08-03T18:33:27,050 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-08-03T18:33:27,053 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-08-03T18:33:27,056 copying build/lib/galaxy/tools/bundled/solid_tools/qualsolid_boxplot_graph.sh -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-08-03T18:33:27,058 copying build/lib/galaxy/tools/bundled/solid_tools/maq_cs_wrapper_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-08-03T18:33:27,060 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_stats.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-08-03T18:33:27,063 copying build/lib/galaxy/tools/bundled/solid_tools/solid_qual_boxplot.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-08-03T18:33:27,065 copying build/lib/galaxy/tools/bundled/solid_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/solid_tools 2026-08-03T18:33:27,068 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters 2026-08-03T18:33:27,070 copying build/lib/galaxy/tools/bundled/filters/condense_characters.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,072 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,074 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,077 copying build/lib/galaxy/tools/bundled/filters/condense_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,079 copying build/lib/galaxy/tools/bundled/filters/uniq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,081 copying build/lib/galaxy/tools/bundled/filters/sff_extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,084 copying build/lib/galaxy/tools/bundled/filters/mergeCols.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,087 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,089 copying build/lib/galaxy/tools/bundled/filters/CreateInterval.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,091 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,093 copying build/lib/galaxy/tools/bundled/filters/bed_to_bigbed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,095 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,097 copying build/lib/galaxy/tools/bundled/filters/catWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,099 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,102 copying build/lib/galaxy/tools/bundled/filters/convert_characters.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,104 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,106 copying build/lib/galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,109 copying build/lib/galaxy/tools/bundled/filters/randomlines.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,111 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,114 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,117 copying build/lib/galaxy/tools/bundled/filters/pasteWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,120 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,123 copying build/lib/galaxy/tools/bundled/filters/joiner.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,126 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,129 copying build/lib/galaxy/tools/bundled/filters/cutWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,133 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,136 copying build/lib/galaxy/tools/bundled/filters/commWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,139 copying build/lib/galaxy/tools/bundled/filters/changeCase.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,142 copying build/lib/galaxy/tools/bundled/filters/changeCase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,145 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/filters/gff 2026-08-03T18:33:27,147 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-08-03T18:33:27,150 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-08-03T18:33:27,153 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-08-03T18:33:27,156 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-08-03T18:33:27,159 copying build/lib/galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-08-03T18:33:27,162 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-08-03T18:33:27,165 copying build/lib/galaxy/tools/bundled/filters/gff/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-08-03T18:33:27,167 copying build/lib/galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-08-03T18:33:27,171 copying build/lib/galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters/gff 2026-08-03T18:33:27,174 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,177 copying build/lib/galaxy/tools/bundled/filters/compare.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,180 copying build/lib/galaxy/tools/bundled/filters/gtf2bedgraph.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,183 copying build/lib/galaxy/tools/bundled/filters/lav_to_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,186 copying build/lib/galaxy/tools/bundled/filters/gff2bed.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,189 copying build/lib/galaxy/tools/bundled/filters/grep_1.0.1.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,193 copying build/lib/galaxy/tools/bundled/filters/axt_to_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,195 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,198 copying build/lib/galaxy/tools/bundled/filters/wc_gnu.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,201 copying build/lib/galaxy/tools/bundled/filters/randomlines.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,203 copying build/lib/galaxy/tools/bundled/filters/fixedValueColumn.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,206 copying build/lib/galaxy/tools/bundled/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,209 copying build/lib/galaxy/tools/bundled/filters/mergeCols.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,211 copying build/lib/galaxy/tools/bundled/filters/bed_to_gff_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,213 copying build/lib/galaxy/tools/bundled/filters/axt_to_concat_fasta.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,215 copying build/lib/galaxy/tools/bundled/filters/fileGrep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,217 copying build/lib/galaxy/tools/bundled/filters/grep.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,220 copying build/lib/galaxy/tools/bundled/filters/joiner2.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,222 copying build/lib/galaxy/tools/bundled/filters/random_lines_two_pass.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,225 copying build/lib/galaxy/tools/bundled/filters/sorter.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,227 copying build/lib/galaxy/tools/bundled/filters/commWrapper.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,229 copying build/lib/galaxy/tools/bundled/filters/trimmer.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,232 copying build/lib/galaxy/tools/bundled/filters/sff_extractor.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,234 copying build/lib/galaxy/tools/bundled/filters/convert_characters.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,236 copying build/lib/galaxy/tools/bundled/filters/gff_to_bed_converter.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,238 copying build/lib/galaxy/tools/bundled/filters/join.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,241 copying build/lib/galaxy/tools/bundled/filters/bed2gff.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,244 copying build/lib/galaxy/tools/bundled/filters/trimmer.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,246 copying build/lib/galaxy/tools/bundled/filters/tailWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,248 copying build/lib/galaxy/tools/bundled/filters/wiggle_to_simple.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,250 copying build/lib/galaxy/tools/bundled/filters/uniq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,252 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,255 copying build/lib/galaxy/tools/bundled/filters/secure_hash_message_digest.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,257 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,259 copying build/lib/galaxy/tools/bundled/filters/remove_beginning.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,261 copying build/lib/galaxy/tools/bundled/filters/wig_to_bigwig.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,263 copying build/lib/galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,266 copying build/lib/galaxy/tools/bundled/filters/headWrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,268 copying build/lib/galaxy/tools/bundled/filters/axt_to_lav.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/filters 2026-08-03T18:33:27,273 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/data_source 2026-08-03T18:33:27,275 copying build/lib/galaxy/tools/bundled/data_source/diced.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,277 copying build/lib/galaxy/tools/bundled/data_source/hapmapmart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,279 copying build/lib/galaxy/tools/bundled/data_source/gramene_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,281 copying build/lib/galaxy/tools/bundled/data_source/cbi_rice_mart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,283 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,285 copying build/lib/galaxy/tools/bundled/data_source/zebrafishmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,287 copying build/lib/galaxy/tools/bundled/data_source/modmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,289 copying build/lib/galaxy/tools/bundled/data_source/biomart.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,291 copying build/lib/galaxy/tools/bundled/data_source/wormbase_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,293 copying build/lib/galaxy/tools/bundled/data_source/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,295 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,297 copying build/lib/galaxy/tools/bundled/data_source/genbank.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,299 copying build/lib/galaxy/tools/bundled/data_source/ebi_sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,301 copying build/lib/galaxy/tools/bundled/data_source/fly_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,303 copying build/lib/galaxy/tools/bundled/data_source/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,306 copying build/lib/galaxy/tools/bundled/data_source/mousemine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,308 copying build/lib/galaxy/tools/bundled/data_source/microbial_import_code.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,310 copying build/lib/galaxy/tools/bundled/data_source/import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,312 copying build/lib/galaxy/tools/bundled/data_source/wormbase.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,315 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,317 copying build/lib/galaxy/tools/bundled/data_source/worm_modencode.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,319 copying build/lib/galaxy/tools/bundled/data_source/ratmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,321 copying build/lib/galaxy/tools/bundled/data_source/sra.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,324 copying build/lib/galaxy/tools/bundled/data_source/genbank.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,326 copying build/lib/galaxy/tools/bundled/data_source/flymine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,328 copying build/lib/galaxy/tools/bundled/data_source/microbial_import.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,330 copying build/lib/galaxy/tools/bundled/data_source/biomart_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,332 copying build/lib/galaxy/tools/bundled/data_source/hbvar.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,334 copying build/lib/galaxy/tools/bundled/data_source/flymine_test.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,336 copying build/lib/galaxy/tools/bundled/data_source/yeastmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,339 copying build/lib/galaxy/tools/bundled/data_source/access_libraries.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,341 copying build/lib/galaxy/tools/bundled/data_source/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,342 copying build/lib/galaxy/tools/bundled/data_source/intermine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,345 copying build/lib/galaxy/tools/bundled/data_source/upload.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,347 copying build/lib/galaxy/tools/bundled/data_source/ncbi_datasets.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,349 copying build/lib/galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,352 copying build/lib/galaxy/tools/bundled/data_source/import.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,354 copying build/lib/galaxy/tools/bundled/data_source/metabolicmine.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,356 copying build/lib/galaxy/tools/bundled/data_source/eupathdb.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/data_source 2026-08-03T18:33:27,358 copying build/lib/galaxy/tools/bundled/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled 2026-08-03T18:33:27,361 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/metag_tools 2026-08-03T18:33:27,362 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-08-03T18:33:27,365 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-08-03T18:33:27,367 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-08-03T18:33:27,370 copying build/lib/galaxy/tools/bundled/metag_tools/blat_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-08-03T18:33:27,372 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_color_wrapper.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-08-03T18:33:27,375 copying build/lib/galaxy/tools/bundled/metag_tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-08-03T18:33:27,377 copying build/lib/galaxy/tools/bundled/metag_tools/shrimp_wrapper.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/metag_tools 2026-08-03T18:33:27,380 creating build/bdist.linux-armv7l/wheel/galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:27,382 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:27,384 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:27,387 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:27,389 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:27,392 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:27,394 copying build/lib/galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:27,397 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:27,399 copying build/lib/galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:27,401 copying build/lib/galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/bundled/next_gen_conversion 2026-08-03T18:33:27,403 copying build/lib/galaxy/tools/flatten_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,406 creating build/bdist.linux-armv7l/wheel/galaxy/tools/search 2026-08-03T18:33:27,408 copying build/lib/galaxy/tools/search/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/search 2026-08-03T18:33:27,411 copying build/lib/galaxy/tools/extract_dataset.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,414 creating build/bdist.linux-armv7l/wheel/galaxy/tools/expressions 2026-08-03T18:33:27,415 copying build/lib/galaxy/tools/expressions/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-08-03T18:33:27,418 copying build/lib/galaxy/tools/expressions/cwlNodeEngine.js -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-08-03T18:33:27,420 copying build/lib/galaxy/tools/expressions/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-08-03T18:33:27,422 copying build/lib/galaxy/tools/expressions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-08-03T18:33:27,424 copying build/lib/galaxy/tools/expressions/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/expressions 2026-08-03T18:33:27,426 copying build/lib/galaxy/tools/filter_failed_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,429 copying build/lib/galaxy/tools/unzip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,431 copying build/lib/galaxy/tools/duplicate_file_to_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,433 copying build/lib/galaxy/tools/evaluation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,437 copying build/lib/galaxy/tools/build_list_1.2.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,439 copying build/lib/galaxy/tools/harmonize_two_collections_list_1.0.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,442 copying build/lib/galaxy/tools/zip_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,444 copying build/lib/galaxy/tools/model_operation_macros.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,447 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters 2026-08-03T18:33:27,448 copying build/lib/galaxy/tools/parameters/wrapped.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,451 copying build/lib/galaxy/tools/parameters/sanitize.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,454 copying build/lib/galaxy/tools/parameters/workflow_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,456 copying build/lib/galaxy/tools/parameters/dataset_matcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,458 copying build/lib/galaxy/tools/parameters/meta.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,461 copying build/lib/galaxy/tools/parameters/pagination.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,464 copying build/lib/galaxy/tools/parameters/basic.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,513 copying build/lib/galaxy/tools/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,516 copying build/lib/galaxy/tools/parameters/input_translation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,519 copying build/lib/galaxy/tools/parameters/dynamic_options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,522 copying build/lib/galaxy/tools/parameters/wrapped_json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,525 creating build/bdist.linux-armv7l/wheel/galaxy/tools/parameters/test 2026-08-03T18:33:27,526 copying build/lib/galaxy/tools/parameters/test/empty.txt -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters/test 2026-08-03T18:33:27,528 copying build/lib/galaxy/tools/parameters/test/1.bed -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters/test 2026-08-03T18:33:27,530 copying build/lib/galaxy/tools/parameters/test/1.tabular -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters/test 2026-08-03T18:33:27,532 copying build/lib/galaxy/tools/parameters/validation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,535 copying build/lib/galaxy/tools/parameters/grouping.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,538 copying build/lib/galaxy/tools/parameters/cancelable_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,540 copying build/lib/galaxy/tools/parameters/populate_model.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,543 copying build/lib/galaxy/tools/parameters/options.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/parameters 2026-08-03T18:33:27,545 copying build/lib/galaxy/tools/cross_product_nested.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,547 copying build/lib/galaxy/tools/split_paired_and_unpaired.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,550 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data_manager 2026-08-03T18:33:27,551 copying build/lib/galaxy/tools/data_manager/manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2026-08-03T18:33:27,554 copying build/lib/galaxy/tools/data_manager/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data_manager 2026-08-03T18:33:27,556 copying build/lib/galaxy/tools/keep_success_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,558 copying build/lib/galaxy/tools/filter_from_file_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,561 copying build/lib/galaxy/tools/relabel_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,563 copying build/lib/galaxy/tools/stock.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,566 copying build/lib/galaxy/tools/tag_collection_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,568 creating build/bdist.linux-armv7l/wheel/galaxy/tools/fetch 2026-08-03T18:33:27,570 copying build/lib/galaxy/tools/fetch/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2026-08-03T18:33:27,572 copying build/lib/galaxy/tools/fetch/workbooks.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/fetch 2026-08-03T18:33:27,575 creating build/bdist.linux-armv7l/wheel/galaxy/tools/actions 2026-08-03T18:33:27,576 copying build/lib/galaxy/tools/actions/data_source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-08-03T18:33:27,578 copying build/lib/galaxy/tools/actions/metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-08-03T18:33:27,581 copying build/lib/galaxy/tools/actions/upload_common.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-08-03T18:33:27,584 copying build/lib/galaxy/tools/actions/upload.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-08-03T18:33:27,586 copying build/lib/galaxy/tools/actions/history_imp_exp.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-08-03T18:33:27,589 copying build/lib/galaxy/tools/actions/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-08-03T18:33:27,593 copying build/lib/galaxy/tools/actions/data_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-08-03T18:33:27,595 copying build/lib/galaxy/tools/actions/model_operations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/actions 2026-08-03T18:33:27,598 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util 2026-08-03T18:33:27,599 copying build/lib/galaxy/tools/util/maf_utilities.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2026-08-03T18:33:27,603 copying build/lib/galaxy/tools/util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util 2026-08-03T18:33:27,605 creating build/bdist.linux-armv7l/wheel/galaxy/tools/util/galaxyops 2026-08-03T18:33:27,607 copying build/lib/galaxy/tools/util/galaxyops/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/util/galaxyops 2026-08-03T18:33:27,609 copying build/lib/galaxy/tools/remote_tool_eval.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,612 copying build/lib/galaxy/tools/merge_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,614 copying build/lib/galaxy/tools/special_tools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,616 copying build/lib/galaxy/tools/filter_null_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,618 copying build/lib/galaxy/tools/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,621 copying build/lib/galaxy/tools/repositories.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,623 copying build/lib/galaxy/tools/filter_failed_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,625 copying build/lib/galaxy/tools/wrappers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,629 creating build/bdist.linux-armv7l/wheel/galaxy/tools/filters 2026-08-03T18:33:27,630 copying build/lib/galaxy/tools/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/filters 2026-08-03T18:33:27,633 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports 2026-08-03T18:33:27,635 creating build/bdist.linux-armv7l/wheel/galaxy/tools/error_reports/plugins 2026-08-03T18:33:27,636 copying build/lib/galaxy/tools/error_reports/plugins/influxdb.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-08-03T18:33:27,639 copying build/lib/galaxy/tools/error_reports/plugins/github.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-08-03T18:33:27,641 copying build/lib/galaxy/tools/error_reports/plugins/sentry.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-08-03T18:33:27,643 copying build/lib/galaxy/tools/error_reports/plugins/gitlab.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-08-03T18:33:27,646 copying build/lib/galaxy/tools/error_reports/plugins/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-08-03T18:33:27,649 copying build/lib/galaxy/tools/error_reports/plugins/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-08-03T18:33:27,651 copying build/lib/galaxy/tools/error_reports/plugins/email.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-08-03T18:33:27,653 copying build/lib/galaxy/tools/error_reports/plugins/slack.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-08-03T18:33:27,655 copying build/lib/galaxy/tools/error_reports/plugins/base_git.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports/plugins 2026-08-03T18:33:27,658 copying build/lib/galaxy/tools/error_reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/error_reports 2026-08-03T18:33:27,660 copying build/lib/galaxy/tools/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,663 copying build/lib/galaxy/tools/filter_from_file.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,665 copying build/lib/galaxy/tools/data_fetch.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,669 creating build/bdist.linux-armv7l/wheel/galaxy/tools/data 2026-08-03T18:33:27,670 copying build/lib/galaxy/tools/data/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/data 2026-08-03T18:33:27,673 copying build/lib/galaxy/tools/biotools.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,675 copying build/lib/galaxy/tools/filter_empty_collection_1.1.0.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,678 copying build/lib/galaxy/tools/sample_sheet_to_tabular.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,680 copying build/lib/galaxy/tools/build_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,682 copying build/lib/galaxy/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,689 copying build/lib/galaxy/tools/filter_null.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,691 copying build/lib/galaxy/tools/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,693 copying build/lib/galaxy/tools/cache.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,696 copying build/lib/galaxy/tools/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,700 copying build/lib/galaxy/tools/data_fetch_utils.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,702 copying build/lib/galaxy/tools/recommendations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,705 copying build/lib/galaxy/tools/filter_empty_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,707 copying build/lib/galaxy/tools/data_fetch.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,709 copying build/lib/galaxy/tools/exception_handling.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,712 copying build/lib/galaxy/tools/cross_product_flat.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,714 copying build/lib/galaxy/tools/nest_collection.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,717 copying build/lib/galaxy/tools/sort_collection_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,720 copying build/lib/galaxy/tools/execution_helpers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,722 copying build/lib/galaxy/tools/harmonize_two_collections_list.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,725 creating build/bdist.linux-armv7l/wheel/galaxy/tools/imp_exp 2026-08-03T18:33:27,727 copying build/lib/galaxy/tools/imp_exp/imp_history_from_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-08-03T18:33:27,729 copying build/lib/galaxy/tools/imp_exp/unpack_tar_gz_archive.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-08-03T18:33:27,732 copying build/lib/galaxy/tools/imp_exp/exp_history_to_archive.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-08-03T18:33:27,734 copying build/lib/galaxy/tools/imp_exp/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-08-03T18:33:27,736 copying build/lib/galaxy/tools/imp_exp/export_history.py -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-08-03T18:33:27,738 copying build/lib/galaxy/tools/imp_exp/exp_history_to_uri.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools/imp_exp 2026-08-03T18:33:27,741 copying build/lib/galaxy/tools/convert_sample_sheet.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,743 copying build/lib/galaxy/tools/apply_rules.xml -> build/bdist.linux-armv7l/wheel/./galaxy/tools 2026-08-03T18:33:27,746 creating build/bdist.linux-armv7l/wheel/galaxy/sse_monitor 2026-08-03T18:33:27,748 copying build/lib/galaxy/sse_monitor/__main__.py -> build/bdist.linux-armv7l/wheel/./galaxy/sse_monitor 2026-08-03T18:33:27,750 copying build/lib/galaxy/sse_monitor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/sse_monitor 2026-08-03T18:33:27,753 creating build/bdist.linux-armv7l/wheel/galaxy/workflow 2026-08-03T18:33:27,755 copying build/lib/galaxy/workflow/render.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,758 copying build/lib/galaxy/workflow/completion_monitor.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,762 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/refactor 2026-08-03T18:33:27,764 copying build/lib/galaxy/workflow/refactor/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-08-03T18:33:27,766 copying build/lib/galaxy/workflow/refactor/execute.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-08-03T18:33:27,770 copying build/lib/galaxy/workflow/refactor/schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/refactor 2026-08-03T18:33:27,773 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/completion_hooks 2026-08-03T18:33:27,775 copying build/lib/galaxy/workflow/completion_hooks/export.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-08-03T18:33:27,778 copying build/lib/galaxy/workflow/completion_hooks/notification.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-08-03T18:33:27,781 copying build/lib/galaxy/workflow/completion_hooks/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-08-03T18:33:27,783 copying build/lib/galaxy/workflow/completion_hooks/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/completion_hooks 2026-08-03T18:33:27,786 copying build/lib/galaxy/workflow/scheduling_manager.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,789 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/resources 2026-08-03T18:33:27,791 copying build/lib/galaxy/workflow/resources/example.py.sample -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2026-08-03T18:33:27,793 copying build/lib/galaxy/workflow/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/resources 2026-08-03T18:33:27,797 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports 2026-08-03T18:33:27,798 copying build/lib/galaxy/workflow/reports/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports 2026-08-03T18:33:27,801 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/reports/generators 2026-08-03T18:33:27,802 copying build/lib/galaxy/workflow/reports/generators/markdown.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2026-08-03T18:33:27,805 copying build/lib/galaxy/workflow/reports/generators/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/reports/generators 2026-08-03T18:33:27,807 copying build/lib/galaxy/workflow/extract.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,810 copying build/lib/galaxy/workflow/run.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,813 copying build/lib/galaxy/workflow/trs_proxy.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,816 copying build/lib/galaxy/workflow/errors.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,819 copying build/lib/galaxy/workflow/steps.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,821 copying build/lib/galaxy/workflow/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,823 copying build/lib/galaxy/workflow/workflow_parameter_input_definitions.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,825 copying build/lib/galaxy/workflow/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,827 copying build/lib/galaxy/workflow/modules.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,833 creating build/bdist.linux-armv7l/wheel/galaxy/workflow/schedulers 2026-08-03T18:33:27,834 copying build/lib/galaxy/workflow/schedulers/core.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2026-08-03T18:33:27,836 copying build/lib/galaxy/workflow/schedulers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow/schedulers 2026-08-03T18:33:27,837 copying build/lib/galaxy/workflow/run_request.py -> build/bdist.linux-armv7l/wheel/./galaxy/workflow 2026-08-03T18:33:27,841 creating build/bdist.linux-armv7l/wheel/galaxy/app_unittest_utils 2026-08-03T18:33:27,842 copying build/lib/galaxy/app_unittest_utils/fetch_workbook_paired.xlsx -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,844 copying build/lib/galaxy/app_unittest_utils/galaxy_mock.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,847 copying build/lib/galaxy/app_unittest_utils/tools_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,849 copying build/lib/galaxy/app_unittest_utils/fetch_workbook.csv -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,851 copying build/lib/galaxy/app_unittest_utils/toolbox_support.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,854 copying build/lib/galaxy/app_unittest_utils/fetch_workbook_paired_with_hashes.xlsx -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,858 copying build/lib/galaxy/app_unittest_utils/fetch_workbook.xlsx -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,862 copying build/lib/galaxy/app_unittest_utils/fetch_workbook.tsv -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,864 copying build/lib/galaxy/app_unittest_utils/fetch_workbook_list_without_ids_example.xlsx -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,866 copying build/lib/galaxy/app_unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,868 copying build/lib/galaxy/app_unittest_utils/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,870 copying build/lib/galaxy/app_unittest_utils/fetch_workbook_list_pairs_without_ids_example.xlsx -> build/bdist.linux-armv7l/wheel/./galaxy/app_unittest_utils 2026-08-03T18:33:27,873 creating build/bdist.linux-armv7l/wheel/galaxy/work 2026-08-03T18:33:27,874 copying build/lib/galaxy/work/context.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2026-08-03T18:33:27,876 copying build/lib/galaxy/work/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/work 2026-08-03T18:33:27,878 copying build/lib/galaxy/work/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy/work 2026-08-03T18:33:27,880 running install_egg_info 2026-08-03T18:33:27,887 Copying src/galaxy_app.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_app-26.1.0-py3.11.egg-info 2026-08-03T18:33:27,948 running install_scripts 2026-08-03T18:33:27,971 creating build/bdist.linux-armv7l/wheel/galaxy_app-26.1.0.dist-info/WHEEL 2026-08-03T18:33:27,975 creating '/tmp/pip-wheel-nc6xclx0/.tmp-q9fbhha9/galaxy_app-26.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-08-03T18:33:27,979 adding 'galaxy/actions/__init__.py' 2026-08-03T18:33:27,983 adding 'galaxy/actions/library.py' 2026-08-03T18:33:27,984 adding 'galaxy/actions/py.typed' 2026-08-03T18:33:27,987 adding 'galaxy/agents/__init__.py' 2026-08-03T18:33:27,994 adding 'galaxy/agents/base.py' 2026-08-03T18:33:28,002 adding 'galaxy/agents/custom_tool.py' 2026-08-03T18:33:28,005 adding 'galaxy/agents/error_analysis.py' 2026-08-03T18:33:28,007 adding 'galaxy/agents/factory.py' 2026-08-03T18:33:28,011 adding 'galaxy/agents/gtn_training.py' 2026-08-03T18:33:28,013 adding 'galaxy/agents/history.py' 2026-08-03T18:33:28,016 adding 'galaxy/agents/history_tools.py' 2026-08-03T18:33:28,018 adding 'galaxy/agents/iwc.py' 2026-08-03T18:33:28,024 adding 'galaxy/agents/operations.py' 2026-08-03T18:33:28,026 adding 'galaxy/agents/orchestrator.py' 2026-08-03T18:33:28,028 adding 'galaxy/agents/page_assistant.py' 2026-08-03T18:33:28,029 adding 'galaxy/agents/py.typed' 2026-08-03T18:33:28,031 adding 'galaxy/agents/registry.py' 2026-08-03T18:33:28,035 adding 'galaxy/agents/router.py' 2026-08-03T18:33:28,037 adding 'galaxy/agents/static_backend.py' 2026-08-03T18:33:28,040 adding 'galaxy/agents/tools.py' 2026-08-03T18:33:28,042 adding 'galaxy/agents/workflow_report.py' 2026-08-03T18:33:28,043 adding 'galaxy/agents/gtn/__init__.py' 2026-08-03T18:33:28,045 adding 'galaxy/agents/gtn/__main__.py' 2026-08-03T18:33:28,048 adding 'galaxy/agents/gtn/build_database.py' 2026-08-03T18:33:28,051 adding 'galaxy/agents/gtn/search.py' 2026-08-03T18:33:28,053 adding 'galaxy/agents/prompts/custom_tool_container_critic.md' 2026-08-03T18:33:28,054 adding 'galaxy/agents/prompts/custom_tool_critic.md' 2026-08-03T18:33:28,056 adding 'galaxy/agents/prompts/custom_tool_structured.md' 2026-08-03T18:33:28,057 adding 'galaxy/agents/prompts/error_analysis.md' 2026-08-03T18:33:28,059 adding 'galaxy/agents/prompts/gtn_training.md' 2026-08-03T18:33:28,060 adding 'galaxy/agents/prompts/history_analyzer.md' 2026-08-03T18:33:28,062 adding 'galaxy/agents/prompts/orchestrator.md' 2026-08-03T18:33:28,064 adding 'galaxy/agents/prompts/page_assistant.md' 2026-08-03T18:33:28,066 adding 'galaxy/agents/prompts/router.md' 2026-08-03T18:33:28,068 adding 'galaxy/agents/prompts/tool_recommendation.md' 2026-08-03T18:33:28,069 adding 'galaxy/agents/prompts/workflow_report.md' 2026-08-03T18:33:28,076 adding 'galaxy/app/__init__.py' 2026-08-03T18:33:28,078 adding 'galaxy/app/py.typed' 2026-08-03T18:33:28,079 adding 'galaxy/app_unittest_utils/__init__.py' 2026-08-03T18:33:28,080 adding 'galaxy/app_unittest_utils/fetch_workbook.csv' 2026-08-03T18:33:28,082 adding 'galaxy/app_unittest_utils/fetch_workbook.tsv' 2026-08-03T18:33:28,083 adding 'galaxy/app_unittest_utils/fetch_workbook.xlsx' 2026-08-03T18:33:28,085 adding 'galaxy/app_unittest_utils/fetch_workbook_list_pairs_without_ids_example.xlsx' 2026-08-03T18:33:28,087 adding 'galaxy/app_unittest_utils/fetch_workbook_list_without_ids_example.xlsx' 2026-08-03T18:33:28,088 adding 'galaxy/app_unittest_utils/fetch_workbook_paired.xlsx' 2026-08-03T18:33:28,090 adding 'galaxy/app_unittest_utils/fetch_workbook_paired_with_hashes.xlsx' 2026-08-03T18:33:28,093 adding 'galaxy/app_unittest_utils/galaxy_mock.py' 2026-08-03T18:33:28,094 adding 'galaxy/app_unittest_utils/py.typed' 2026-08-03T18:33:28,095 adding 'galaxy/app_unittest_utils/toolbox_support.py' 2026-08-03T18:33:28,097 adding 'galaxy/app_unittest_utils/tools_support.py' 2026-08-03T18:33:28,099 adding 'galaxy/authnz/__init__.py' 2026-08-03T18:33:28,100 adding 'galaxy/authnz/auth0.py' 2026-08-03T18:33:28,102 adding 'galaxy/authnz/cilogon.py' 2026-08-03T18:33:28,103 adding 'galaxy/authnz/keycloak.py' 2026-08-03T18:33:28,106 adding 'galaxy/authnz/managers.py' 2026-08-03T18:33:28,107 adding 'galaxy/authnz/oidc.py' 2026-08-03T18:33:28,109 adding 'galaxy/authnz/oidc_utils.py' 2026-08-03T18:33:28,115 adding 'galaxy/authnz/psa_authnz.py' 2026-08-03T18:33:28,117 adding 'galaxy/authnz/py.typed' 2026-08-03T18:33:28,118 adding 'galaxy/authnz/tapis.py' 2026-08-03T18:33:28,119 adding 'galaxy/authnz/util.py' 2026-08-03T18:33:28,122 adding 'galaxy/authnz/xsd/oidc_backends_config.xsd' 2026-08-03T18:33:28,123 adding 'galaxy/carbon_emissions/__init__.py' 2026-08-03T18:33:28,125 adding 'galaxy/carbon_emissions/carbon_intensity.csv' 2026-08-03T18:33:28,126 adding 'galaxy/carbon_emissions/py.typed' 2026-08-03T18:33:28,129 adding 'galaxy/celery/__init__.py' 2026-08-03T18:33:28,130 adding 'galaxy/celery/_serialization.py' 2026-08-03T18:33:28,132 adding 'galaxy/celery/base_task.py' 2026-08-03T18:33:28,134 adding 'galaxy/celery/helpers.py' 2026-08-03T18:33:28,135 adding 'galaxy/celery/py.typed' 2026-08-03T18:33:28,139 adding 'galaxy/celery/tasks.py' 2026-08-03T18:33:28,142 adding 'galaxy/config_watchers/__init__.py' 2026-08-03T18:33:28,143 adding 'galaxy/config_watchers/py.typed' 2026-08-03T18:33:28,146 adding 'galaxy/dependencies/__init__.py' 2026-08-03T18:33:28,147 adding 'galaxy/dependencies/conditional-constraints.txt' 2026-08-03T18:33:28,148 adding 'galaxy/dependencies/conditional-requirements.txt' 2026-08-03T18:33:28,150 adding 'galaxy/dependencies/dev-requirements.txt' 2026-08-03T18:33:28,151 adding 'galaxy/dependencies/lint-requirements.txt' 2026-08-03T18:33:28,152 adding 'galaxy/dependencies/pinned-lint-requirements.txt' 2026-08-03T18:33:28,154 adding 'galaxy/dependencies/pinned-requirements.txt' 2026-08-03T18:33:28,156 adding 'galaxy/dependencies/pinned-test-requirements.txt' 2026-08-03T18:33:28,157 adding 'galaxy/dependencies/pinned-typecheck-requirements.txt' 2026-08-03T18:33:28,158 adding 'galaxy/dependencies/py.typed' 2026-08-03T18:33:28,159 adding 'galaxy/dependencies/script.py' 2026-08-03T18:33:28,161 adding 'galaxy/dependencies/update.sh' 2026-08-03T18:33:28,162 adding 'galaxy/dependencies/update_lint_requirements.sh' 2026-08-03T18:33:28,164 adding 'galaxy/di/__init__.py' 2026-08-03T18:33:28,165 adding 'galaxy/di/py.typed' 2026-08-03T18:33:28,166 adding 'galaxy/forms/__init__.py' 2026-08-03T18:33:28,168 adding 'galaxy/forms/forms.py' 2026-08-03T18:33:28,169 adding 'galaxy/forms/py.typed' 2026-08-03T18:33:28,187 adding 'galaxy/jobs/__init__.py' 2026-08-03T18:33:28,190 adding 'galaxy/jobs/command_factory.py' 2026-08-03T18:33:28,198 adding 'galaxy/jobs/dynamic_tool_destination.py' 2026-08-03T18:33:28,205 adding 'galaxy/jobs/handler.py' 2026-08-03T18:33:28,207 adding 'galaxy/jobs/job_destination.py' 2026-08-03T18:33:28,208 adding 'galaxy/jobs/manager.py' 2026-08-03T18:33:28,210 adding 'galaxy/jobs/mapper.py' 2026-08-03T18:33:28,212 adding 'galaxy/jobs/py.typed' 2026-08-03T18:33:28,213 adding 'galaxy/jobs/rule_helper.py' 2026-08-03T18:33:28,215 adding 'galaxy/jobs/stock_rules.py' 2026-08-03T18:33:28,216 adding 'galaxy/jobs/rules/__init__.py' 2026-08-03T18:33:28,222 adding 'galaxy/jobs/runners/__init__.py' 2026-08-03T18:33:28,225 adding 'galaxy/jobs/runners/aws.py' 2026-08-03T18:33:28,227 adding 'galaxy/jobs/runners/chronos.py' 2026-08-03T18:33:28,229 adding 'galaxy/jobs/runners/cli.py' 2026-08-03T18:33:28,232 adding 'galaxy/jobs/runners/condor.py' 2026-08-03T18:33:28,235 adding 'galaxy/jobs/runners/drmaa.py' 2026-08-03T18:33:28,239 adding 'galaxy/jobs/runners/gcp_batch.py' 2026-08-03T18:33:28,242 adding 'galaxy/jobs/runners/godocker.py' 2026-08-03T18:33:28,246 adding 'galaxy/jobs/runners/htcondor.py' 2026-08-03T18:33:28,248 adding 'galaxy/jobs/runners/htcondor_helper.py' 2026-08-03T18:33:28,254 adding 'galaxy/jobs/runners/kubernetes.py' 2026-08-03T18:33:28,256 adding 'galaxy/jobs/runners/local.py' 2026-08-03T18:33:28,259 adding 'galaxy/jobs/runners/pbs.py' 2026-08-03T18:33:28,266 adding 'galaxy/jobs/runners/pulsar.py' 2026-08-03T18:33:28,268 adding 'galaxy/jobs/runners/slurm.py' 2026-08-03T18:33:28,269 adding 'galaxy/jobs/runners/state_handler_factory.py' 2026-08-03T18:33:28,271 adding 'galaxy/jobs/runners/tasks.py' 2026-08-03T18:33:28,275 adding 'galaxy/jobs/runners/univa.py' 2026-08-03T18:33:28,277 adding 'galaxy/jobs/runners/state_handlers/__init__.py' 2026-08-03T18:33:28,278 adding 'galaxy/jobs/runners/state_handlers/_safe_eval.py' 2026-08-03T18:33:28,280 adding 'galaxy/jobs/runners/state_handlers/resubmit.py' 2026-08-03T18:33:28,282 adding 'galaxy/jobs/runners/util/__init__.py' 2026-08-03T18:33:28,283 adding 'galaxy/jobs/runners/util/env.py' 2026-08-03T18:33:28,284 adding 'galaxy/jobs/runners/util/external.py' 2026-08-03T18:33:28,285 adding 'galaxy/jobs/runners/util/fork_safe_write.py' 2026-08-03T18:33:28,287 adding 'galaxy/jobs/runners/util/kill.py' 2026-08-03T18:33:28,288 adding 'galaxy/jobs/runners/util/process_groups.py' 2026-08-03T18:33:28,290 adding 'galaxy/jobs/runners/util/pykube_util.py' 2026-08-03T18:33:28,291 adding 'galaxy/jobs/runners/util/sudo.py' 2026-08-03T18:33:28,293 adding 'galaxy/jobs/runners/util/cli/__init__.py' 2026-08-03T18:33:28,294 adding 'galaxy/jobs/runners/util/cli/factory.py' 2026-08-03T18:33:28,296 adding 'galaxy/jobs/runners/util/cli/job/__init__.py' 2026-08-03T18:33:28,297 adding 'galaxy/jobs/runners/util/cli/job/lsf.py' 2026-08-03T18:33:28,299 adding 'galaxy/jobs/runners/util/cli/job/pbs.py' 2026-08-03T18:33:28,300 adding 'galaxy/jobs/runners/util/cli/job/slurm.py' 2026-08-03T18:33:28,301 adding 'galaxy/jobs/runners/util/cli/job/slurm_torque.py' 2026-08-03T18:33:28,303 adding 'galaxy/jobs/runners/util/cli/job/torque.py' 2026-08-03T18:33:28,305 adding 'galaxy/jobs/runners/util/cli/shell/__init__.py' 2026-08-03T18:33:28,306 adding 'galaxy/jobs/runners/util/cli/shell/local.py' 2026-08-03T18:33:28,307 adding 'galaxy/jobs/runners/util/cli/shell/rsh.py' 2026-08-03T18:33:28,309 adding 'galaxy/jobs/runners/util/condor/__init__.py' 2026-08-03T18:33:28,311 adding 'galaxy/jobs/runners/util/gcp_batch/__init__.py' 2026-08-03T18:33:28,313 adding 'galaxy/jobs/runners/util/gcp_batch/container_script.sh' 2026-08-03T18:33:28,314 adding 'galaxy/jobs/runners/util/gcp_batch/direct_script.sh' 2026-08-03T18:33:28,316 adding 'galaxy/jobs/runners/util/gcp_batch/helpers.py' 2026-08-03T18:33:28,318 adding 'galaxy/jobs/runners/util/job_script/CLUSTER_SLOTS_STATEMENT.sh' 2026-08-03T18:33:28,319 adding 'galaxy/jobs/runners/util/job_script/DEFAULT_JOB_FILE_TEMPLATE.sh' 2026-08-03T18:33:28,320 adding 'galaxy/jobs/runners/util/job_script/MEMORY_STATEMENT_TEMPLATE.sh' 2026-08-03T18:33:28,322 adding 'galaxy/jobs/runners/util/job_script/__init__.py' 2026-08-03T18:33:28,324 adding 'galaxy/jobs/splitters/__init__.py' 2026-08-03T18:33:28,325 adding 'galaxy/jobs/splitters/basic.py' 2026-08-03T18:33:28,327 adding 'galaxy/jobs/splitters/multi.py' 2026-08-03T18:33:28,329 adding 'galaxy/main/__init__.py' 2026-08-03T18:33:28,330 adding 'galaxy/main/py.typed' 2026-08-03T18:33:28,332 adding 'galaxy/main_config/__init__.py' 2026-08-03T18:33:28,334 adding 'galaxy/main_config/py.typed' 2026-08-03T18:33:28,337 adding 'galaxy/managers/__init__.py' 2026-08-03T18:33:28,339 adding 'galaxy/managers/_config_templates.py' 2026-08-03T18:33:28,341 adding 'galaxy/managers/agents.py' 2026-08-03T18:33:28,342 adding 'galaxy/managers/annotatable.py' 2026-08-03T18:33:28,343 adding 'galaxy/managers/api_keys.py' 2026-08-03T18:33:28,351 adding 'galaxy/managers/base.py' 2026-08-03T18:33:28,353 adding 'galaxy/managers/chat.py' 2026-08-03T18:33:28,355 adding 'galaxy/managers/citations.py' 2026-08-03T18:33:28,360 adding 'galaxy/managers/collections.py' 2026-08-03T18:33:28,362 adding 'galaxy/managers/collections_util.py' 2026-08-03T18:33:28,364 adding 'galaxy/managers/configuration.py' 2026-08-03T18:33:28,366 adding 'galaxy/managers/context.py' 2026-08-03T18:33:28,368 adding 'galaxy/managers/credentials.py' 2026-08-03T18:33:28,375 adding 'galaxy/managers/dataset_storage_operations.py' 2026-08-03T18:33:28,380 adding 'galaxy/managers/datasets.py' 2026-08-03T18:33:28,382 adding 'galaxy/managers/datatypes.py' 2026-08-03T18:33:28,384 adding 'galaxy/managers/dbkeys.py' 2026-08-03T18:33:28,385 adding 'galaxy/managers/deletable.py' 2026-08-03T18:33:28,387 adding 'galaxy/managers/display_applications.py' 2026-08-03T18:33:28,388 adding 'galaxy/managers/executables.py' 2026-08-03T18:33:28,389 adding 'galaxy/managers/export_tracker.py' 2026-08-03T18:33:28,391 adding 'galaxy/managers/favorites.py' 2026-08-03T18:33:28,394 adding 'galaxy/managers/file_source_instances.py' 2026-08-03T18:33:28,397 adding 'galaxy/managers/folders.py' 2026-08-03T18:33:28,398 adding 'galaxy/managers/forms.py' 2026-08-03T18:33:28,400 adding 'galaxy/managers/genomes.py' 2026-08-03T18:33:28,401 adding 'galaxy/managers/group_roles.py' 2026-08-03T18:33:28,402 adding 'galaxy/managers/group_users.py' 2026-08-03T18:33:28,404 adding 'galaxy/managers/groups.py' 2026-08-03T18:33:28,407 adding 'galaxy/managers/hdas.py' 2026-08-03T18:33:28,409 adding 'galaxy/managers/hdcas.py' 2026-08-03T18:33:28,411 adding 'galaxy/managers/headers_encryption.py' 2026-08-03T18:33:28,416 adding 'galaxy/managers/histories.py' 2026-08-03T18:33:28,418 adding 'galaxy/managers/history_audit_monitor.py' 2026-08-03T18:33:28,423 adding 'galaxy/managers/history_contents.py' 2026-08-03T18:33:28,426 adding 'galaxy/managers/history_graph.py' 2026-08-03T18:33:28,428 adding 'galaxy/managers/interactivetool.py' 2026-08-03T18:33:28,429 adding 'galaxy/managers/item_tags.py' 2026-08-03T18:33:28,431 adding 'galaxy/managers/job_connections.py' 2026-08-03T18:33:28,442 adding 'galaxy/managers/jobs.py' 2026-08-03T18:33:28,444 adding 'galaxy/managers/landing.py' 2026-08-03T18:33:28,446 adding 'galaxy/managers/lddas.py' 2026-08-03T18:33:28,448 adding 'galaxy/managers/libraries.py' 2026-08-03T18:33:28,450 adding 'galaxy/managers/library_datasets.py' 2026-08-03T18:33:28,461 adding 'galaxy/managers/licenses.json' 2026-08-03T18:33:28,463 adding 'galaxy/managers/licenses.py' 2026-08-03T18:33:28,465 adding 'galaxy/managers/markdown_export_base.css' 2026-08-03T18:33:28,466 adding 'galaxy/managers/markdown_parse.py' 2026-08-03T18:33:28,472 adding 'galaxy/managers/markdown_util.py' 2026-08-03T18:33:28,475 adding 'galaxy/managers/model_stores.py' 2026-08-03T18:33:28,479 adding 'galaxy/managers/notification.py' 2026-08-03T18:33:28,481 adding 'galaxy/managers/object_store_instances.py' 2026-08-03T18:33:28,485 adding 'galaxy/managers/pages.py' 2026-08-03T18:33:28,486 adding 'galaxy/managers/py.typed' 2026-08-03T18:33:28,488 adding 'galaxy/managers/queue_metrics.py' 2026-08-03T18:33:28,490 adding 'galaxy/managers/quotas.py' 2026-08-03T18:33:28,491 adding 'galaxy/managers/ratable.py' 2026-08-03T18:33:28,493 adding 'galaxy/managers/rbac_secured.py' 2026-08-03T18:33:28,495 adding 'galaxy/managers/remote_files.py' 2026-08-03T18:33:28,496 adding 'galaxy/managers/roles.py' 2026-08-03T18:33:28,498 adding 'galaxy/managers/secured.py' 2026-08-03T18:33:28,499 adding 'galaxy/managers/session.py' 2026-08-03T18:33:28,502 adding 'galaxy/managers/sharable.py' 2026-08-03T18:33:28,505 adding 'galaxy/managers/sse.py' 2026-08-03T18:33:28,506 adding 'galaxy/managers/sse_dispatch.py' 2026-08-03T18:33:28,508 adding 'galaxy/managers/taggable.py' 2026-08-03T18:33:28,509 adding 'galaxy/managers/tags.py' 2026-08-03T18:33:28,511 adding 'galaxy/managers/tasks.py' 2026-08-03T18:33:28,512 adding 'galaxy/managers/tool_data.py' 2026-08-03T18:33:28,514 adding 'galaxy/managers/tools.py' 2026-08-03T18:33:28,516 adding 'galaxy/managers/tours.py' 2026-08-03T18:33:28,521 adding 'galaxy/managers/users.py' 2026-08-03T18:33:28,523 adding 'galaxy/managers/visualizations.py' 2026-08-03T18:33:28,525 adding 'galaxy/managers/workflow_completion.py' 2026-08-03T18:33:28,538 adding 'galaxy/managers/workflows.py' 2026-08-03T18:33:28,542 adding 'galaxy/queue_worker/__init__.py' 2026-08-03T18:33:28,543 adding 'galaxy/queue_worker/py.typed' 2026-08-03T18:33:28,545 adding 'galaxy/queues/__init__.py' 2026-08-03T18:33:28,546 adding 'galaxy/queues/py.typed' 2026-08-03T18:33:28,549 adding 'galaxy/short_term_storage/__init__.py' 2026-08-03T18:33:28,550 adding 'galaxy/short_term_storage/py.typed' 2026-08-03T18:33:28,552 adding 'galaxy/sse_monitor/__init__.py' 2026-08-03T18:33:28,553 adding 'galaxy/sse_monitor/__main__.py' 2026-08-03T18:33:28,555 adding 'galaxy/structured_app/__init__.py' 2026-08-03T18:33:28,556 adding 'galaxy/structured_app/py.typed' 2026-08-03T18:33:28,558 adding 'galaxy/tool_shed/__init__.py' 2026-08-03T18:33:28,559 adding 'galaxy/tool_shed/cache.py' 2026-08-03T18:33:28,560 adding 'galaxy/tool_shed/py.typed' 2026-08-03T18:33:28,562 adding 'galaxy/tool_shed/repository_type.py' 2026-08-03T18:33:28,563 adding 'galaxy/tool_shed/galaxy_install/__init__.py' 2026-08-03T18:33:28,564 adding 'galaxy/tool_shed/galaxy_install/client.py' 2026-08-03T18:33:28,569 adding 'galaxy/tool_shed/galaxy_install/install_manager.py' 2026-08-03T18:33:28,575 adding 'galaxy/tool_shed/galaxy_install/installed_repository_manager.py' 2026-08-03T18:33:28,577 adding 'galaxy/tool_shed/galaxy_install/update_repository_manager.py' 2026-08-03T18:33:28,578 adding 'galaxy/tool_shed/galaxy_install/metadata/__init__.py' 2026-08-03T18:33:28,580 adding 'galaxy/tool_shed/galaxy_install/metadata/installed_repository_metadata_manager.py' 2026-08-03T18:33:28,582 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/__init__.py' 2026-08-03T18:33:28,586 adding 'galaxy/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py' 2026-08-03T18:33:28,587 adding 'galaxy/tool_shed/galaxy_install/tools/__init__.py' 2026-08-03T18:33:28,589 adding 'galaxy/tool_shed/galaxy_install/tools/data_manager.py' 2026-08-03T18:33:28,592 adding 'galaxy/tool_shed/galaxy_install/tools/tool_panel_manager.py' 2026-08-03T18:33:28,594 adding 'galaxy/tool_shed/metadata/__init__.py' 2026-08-03T18:33:28,600 adding 'galaxy/tool_shed/metadata/metadata_generator.py' 2026-08-03T18:33:28,601 adding 'galaxy/tool_shed/tools/__init__.py' 2026-08-03T18:33:28,604 adding 'galaxy/tool_shed/tools/data_table_manager.py' 2026-08-03T18:33:28,605 adding 'galaxy/tool_shed/tools/tool_validator.py' 2026-08-03T18:33:28,607 adding 'galaxy/tool_shed/unittest_utils/__init__.py' 2026-08-03T18:33:28,609 adding 'galaxy/tool_shed/util/__init__.py' 2026-08-03T18:33:28,611 adding 'galaxy/tool_shed/util/basic_util.py' 2026-08-03T18:33:28,612 adding 'galaxy/tool_shed/util/container_util.py' 2026-08-03T18:33:28,614 adding 'galaxy/tool_shed/util/dependency_display.py' 2026-08-03T18:33:28,616 adding 'galaxy/tool_shed/util/hg_util.py' 2026-08-03T18:33:28,617 adding 'galaxy/tool_shed/util/metadata_util.py' 2026-08-03T18:33:28,621 adding 'galaxy/tool_shed/util/repository_util.py' 2026-08-03T18:33:28,623 adding 'galaxy/tool_shed/util/shed_util_common.py' 2026-08-03T18:33:28,625 adding 'galaxy/tool_shed/util/tool_dependency_util.py' 2026-08-03T18:33:28,627 adding 'galaxy/tool_shed/util/tool_util.py' 2026-08-03T18:33:28,630 adding 'galaxy/tool_shed/util/utility_container_manager.py' 2026-08-03T18:33:28,658 adding 'galaxy/tools/__init__.py' 2026-08-03T18:33:28,661 adding 'galaxy/tools/_types.py' 2026-08-03T18:33:28,662 adding 'galaxy/tools/apply_rules.xml' 2026-08-03T18:33:28,664 adding 'galaxy/tools/biotools.py' 2026-08-03T18:33:28,665 adding 'galaxy/tools/build_list.xml' 2026-08-03T18:33:28,666 adding 'galaxy/tools/build_list_1.2.0.xml' 2026-08-03T18:33:28,668 adding 'galaxy/tools/cache.py' 2026-08-03T18:33:28,669 adding 'galaxy/tools/convert_sample_sheet.xml' 2026-08-03T18:33:28,671 adding 'galaxy/tools/cross_product_flat.xml' 2026-08-03T18:33:28,672 adding 'galaxy/tools/cross_product_nested.xml' 2026-08-03T18:33:28,676 adding 'galaxy/tools/data_fetch.py' 2026-08-03T18:33:28,677 adding 'galaxy/tools/data_fetch.xml' 2026-08-03T18:33:28,679 adding 'galaxy/tools/data_fetch_utils.py' 2026-08-03T18:33:28,680 adding 'galaxy/tools/duplicate_file_to_collection.xml' 2026-08-03T18:33:28,682 adding 'galaxy/tools/errors.py' 2026-08-03T18:33:28,688 adding 'galaxy/tools/evaluation.py' 2026-08-03T18:33:28,689 adding 'galaxy/tools/exception_handling.py' 2026-08-03T18:33:28,694 adding 'galaxy/tools/execute.py' 2026-08-03T18:33:28,695 adding 'galaxy/tools/execution_helpers.py' 2026-08-03T18:33:28,697 adding 'galaxy/tools/extract_dataset.xml' 2026-08-03T18:33:28,698 adding 'galaxy/tools/filter_empty_collection.xml' 2026-08-03T18:33:28,699 adding 'galaxy/tools/filter_empty_collection_1.1.0.xml' 2026-08-03T18:33:28,701 adding 'galaxy/tools/filter_failed_collection.xml' 2026-08-03T18:33:28,702 adding 'galaxy/tools/filter_failed_collection_1.1.0.xml' 2026-08-03T18:33:28,703 adding 'galaxy/tools/filter_from_file.xml' 2026-08-03T18:33:28,705 adding 'galaxy/tools/filter_from_file_1.1.0.xml' 2026-08-03T18:33:28,706 adding 'galaxy/tools/filter_null.xml' 2026-08-03T18:33:28,708 adding 'galaxy/tools/filter_null_1.1.0.xml' 2026-08-03T18:33:28,709 adding 'galaxy/tools/flatten_collection.xml' 2026-08-03T18:33:28,711 adding 'galaxy/tools/harmonize_two_collections_list.xml' 2026-08-03T18:33:28,712 adding 'galaxy/tools/harmonize_two_collections_list_1.0.0.xml' 2026-08-03T18:33:28,714 adding 'galaxy/tools/keep_success_collection.xml' 2026-08-03T18:33:28,715 adding 'galaxy/tools/keep_success_collection_1.1.0.xml' 2026-08-03T18:33:28,717 adding 'galaxy/tools/merge_collection.xml' 2026-08-03T18:33:28,718 adding 'galaxy/tools/model_operation_macros.xml' 2026-08-03T18:33:28,720 adding 'galaxy/tools/nest_collection.xml' 2026-08-03T18:33:28,721 adding 'galaxy/tools/py.typed' 2026-08-03T18:33:28,723 adding 'galaxy/tools/recommendations.py' 2026-08-03T18:33:28,725 adding 'galaxy/tools/relabel_from_file.xml' 2026-08-03T18:33:28,727 adding 'galaxy/tools/remote_tool_eval.py' 2026-08-03T18:33:28,728 adding 'galaxy/tools/repositories.py' 2026-08-03T18:33:28,730 adding 'galaxy/tools/runtime.py' 2026-08-03T18:33:28,732 adding 'galaxy/tools/sample_sheet_to_tabular.xml' 2026-08-03T18:33:28,733 adding 'galaxy/tools/sort_collection_list.xml' 2026-08-03T18:33:28,735 adding 'galaxy/tools/special_tools.py' 2026-08-03T18:33:28,736 adding 'galaxy/tools/split_paired_and_unpaired.xml' 2026-08-03T18:33:28,737 adding 'galaxy/tools/stock.py' 2026-08-03T18:33:28,739 adding 'galaxy/tools/tag_collection_from_file.xml' 2026-08-03T18:33:28,740 adding 'galaxy/tools/unzip_collection.xml' 2026-08-03T18:33:28,744 adding 'galaxy/tools/wrappers.py' 2026-08-03T18:33:28,746 adding 'galaxy/tools/zip_collection.xml' 2026-08-03T18:33:28,754 adding 'galaxy/tools/actions/__init__.py' 2026-08-03T18:33:28,756 adding 'galaxy/tools/actions/data_manager.py' 2026-08-03T18:33:28,757 adding 'galaxy/tools/actions/data_source.py' 2026-08-03T18:33:28,759 adding 'galaxy/tools/actions/history_imp_exp.py' 2026-08-03T18:33:28,761 adding 'galaxy/tools/actions/metadata.py' 2026-08-03T18:33:28,763 adding 'galaxy/tools/actions/model_operations.py' 2026-08-03T18:33:28,765 adding 'galaxy/tools/actions/upload.py' 2026-08-03T18:33:28,767 adding 'galaxy/tools/actions/upload_common.py' 2026-08-03T18:33:28,769 adding 'galaxy/tools/bundled/__init__.py' 2026-08-03T18:33:28,771 adding 'galaxy/tools/bundled/data_export/export_remote.py' 2026-08-03T18:33:28,773 adding 'galaxy/tools/bundled/data_export/export_remote.xml' 2026-08-03T18:33:28,775 adding 'galaxy/tools/bundled/data_source/__init__.py' 2026-08-03T18:33:28,776 adding 'galaxy/tools/bundled/data_source/access_libraries.xml' 2026-08-03T18:33:28,778 adding 'galaxy/tools/bundled/data_source/biomart.xml' 2026-08-03T18:33:28,779 adding 'galaxy/tools/bundled/data_source/biomart_test.xml' 2026-08-03T18:33:28,780 adding 'galaxy/tools/bundled/data_source/cbi_rice_mart.xml' 2026-08-03T18:33:28,782 adding 'galaxy/tools/bundled/data_source/data_source.py' 2026-08-03T18:33:28,783 adding 'galaxy/tools/bundled/data_source/diced.xml' 2026-08-03T18:33:28,784 adding 'galaxy/tools/bundled/data_source/ebi_sra.xml' 2026-08-03T18:33:28,785 adding 'galaxy/tools/bundled/data_source/eupathdb.xml' 2026-08-03T18:33:28,787 adding 'galaxy/tools/bundled/data_source/fly_modencode.xml' 2026-08-03T18:33:28,788 adding 'galaxy/tools/bundled/data_source/flymine.xml' 2026-08-03T18:33:28,789 adding 'galaxy/tools/bundled/data_source/flymine_test.xml' 2026-08-03T18:33:28,790 adding 'galaxy/tools/bundled/data_source/genbank.py' 2026-08-03T18:33:28,791 adding 'galaxy/tools/bundled/data_source/genbank.xml' 2026-08-03T18:33:28,793 adding 'galaxy/tools/bundled/data_source/gramene_mart.xml' 2026-08-03T18:33:28,794 adding 'galaxy/tools/bundled/data_source/hapmapmart.xml' 2026-08-03T18:33:28,795 adding 'galaxy/tools/bundled/data_source/hbvar.xml' 2026-08-03T18:33:28,796 adding 'galaxy/tools/bundled/data_source/import.py' 2026-08-03T18:33:28,798 adding 'galaxy/tools/bundled/data_source/import.xml' 2026-08-03T18:33:28,799 adding 'galaxy/tools/bundled/data_source/intermine.xml' 2026-08-03T18:33:28,800 adding 'galaxy/tools/bundled/data_source/metabolicmine.xml' 2026-08-03T18:33:28,802 adding 'galaxy/tools/bundled/data_source/microbial_import.py' 2026-08-03T18:33:28,803 adding 'galaxy/tools/bundled/data_source/microbial_import.xml' 2026-08-03T18:33:28,804 adding 'galaxy/tools/bundled/data_source/microbial_import_code.py' 2026-08-03T18:33:28,806 adding 'galaxy/tools/bundled/data_source/modmine.xml' 2026-08-03T18:33:28,807 adding 'galaxy/tools/bundled/data_source/mousemine.xml' 2026-08-03T18:33:28,808 adding 'galaxy/tools/bundled/data_source/ncbi_datasets.xml' 2026-08-03T18:33:28,809 adding 'galaxy/tools/bundled/data_source/ratmine.xml' 2026-08-03T18:33:28,811 adding 'galaxy/tools/bundled/data_source/sra.xml' 2026-08-03T18:33:28,812 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser.xml' 2026-08-03T18:33:28,813 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_archaea.xml' 2026-08-03T18:33:28,815 adding 'galaxy/tools/bundled/data_source/ucsc_tablebrowser_test.xml' 2026-08-03T18:33:28,817 adding 'galaxy/tools/bundled/data_source/upload.py' 2026-08-03T18:33:28,819 adding 'galaxy/tools/bundled/data_source/upload.xml' 2026-08-03T18:33:28,820 adding 'galaxy/tools/bundled/data_source/worm_modencode.xml' 2026-08-03T18:33:28,822 adding 'galaxy/tools/bundled/data_source/wormbase.xml' 2026-08-03T18:33:28,823 adding 'galaxy/tools/bundled/data_source/wormbase_test.xml' 2026-08-03T18:33:28,824 adding 'galaxy/tools/bundled/data_source/yeastmine.xml' 2026-08-03T18:33:28,826 adding 'galaxy/tools/bundled/data_source/zebrafishmine.xml' 2026-08-03T18:33:28,827 adding 'galaxy/tools/bundled/expression_tools/expression_macros.xml' 2026-08-03T18:33:28,829 adding 'galaxy/tools/bundled/expression_tools/parse_values_from_file.xml' 2026-08-03T18:33:28,831 adding 'galaxy/tools/bundled/expression_tools/pick_value.xml' 2026-08-03T18:33:28,833 adding 'galaxy/tools/bundled/extract/__init__.py' 2026-08-03T18:33:28,835 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.py' 2026-08-03T18:33:28,836 adding 'galaxy/tools/bundled/extract/extract_genomic_dna.xml' 2026-08-03T18:33:28,838 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.py' 2026-08-03T18:33:28,840 adding 'galaxy/tools/bundled/extract/liftOver_wrapper.xml' 2026-08-03T18:33:28,843 adding 'galaxy/tools/bundled/filters/CreateInterval.pl' 2026-08-03T18:33:28,844 adding 'galaxy/tools/bundled/filters/CreateInterval.xml' 2026-08-03T18:33:28,845 adding 'galaxy/tools/bundled/filters/__init__.py' 2026-08-03T18:33:28,846 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.py' 2026-08-03T18:33:28,848 adding 'galaxy/tools/bundled/filters/axt_to_concat_fasta.xml' 2026-08-03T18:33:28,849 adding 'galaxy/tools/bundled/filters/axt_to_fasta.py' 2026-08-03T18:33:28,851 adding 'galaxy/tools/bundled/filters/axt_to_fasta.xml' 2026-08-03T18:33:28,852 adding 'galaxy/tools/bundled/filters/axt_to_lav.py' 2026-08-03T18:33:28,854 adding 'galaxy/tools/bundled/filters/axt_to_lav.xml' 2026-08-03T18:33:28,855 adding 'galaxy/tools/bundled/filters/axt_to_lav_code.py' 2026-08-03T18:33:28,857 adding 'galaxy/tools/bundled/filters/bed2gff.xml' 2026-08-03T18:33:28,858 adding 'galaxy/tools/bundled/filters/bed_to_bigbed.xml' 2026-08-03T18:33:28,860 adding 'galaxy/tools/bundled/filters/bed_to_gff_converter.py' 2026-08-03T18:33:28,861 adding 'galaxy/tools/bundled/filters/catWrapper.xml' 2026-08-03T18:33:28,863 adding 'galaxy/tools/bundled/filters/changeCase.pl' 2026-08-03T18:33:28,864 adding 'galaxy/tools/bundled/filters/changeCase.xml' 2026-08-03T18:33:28,865 adding 'galaxy/tools/bundled/filters/commWrapper.pl' 2026-08-03T18:33:28,866 adding 'galaxy/tools/bundled/filters/commWrapper.xml' 2026-08-03T18:33:28,868 adding 'galaxy/tools/bundled/filters/compare.xml' 2026-08-03T18:33:28,869 adding 'galaxy/tools/bundled/filters/condense_characters.pl' 2026-08-03T18:33:28,871 adding 'galaxy/tools/bundled/filters/condense_characters.xml' 2026-08-03T18:33:28,872 adding 'galaxy/tools/bundled/filters/convert_characters.py' 2026-08-03T18:33:28,873 adding 'galaxy/tools/bundled/filters/convert_characters.xml' 2026-08-03T18:33:28,875 adding 'galaxy/tools/bundled/filters/cutWrapper.pl' 2026-08-03T18:33:28,876 adding 'galaxy/tools/bundled/filters/cutWrapper.xml' 2026-08-03T18:33:28,878 adding 'galaxy/tools/bundled/filters/fileGrep.xml' 2026-08-03T18:33:28,879 adding 'galaxy/tools/bundled/filters/fixedValueColumn.pl' 2026-08-03T18:33:28,880 adding 'galaxy/tools/bundled/filters/fixedValueColumn.xml' 2026-08-03T18:33:28,882 adding 'galaxy/tools/bundled/filters/gff2bed.xml' 2026-08-03T18:33:28,883 adding 'galaxy/tools/bundled/filters/gff_to_bed_converter.py' 2026-08-03T18:33:28,885 adding 'galaxy/tools/bundled/filters/grep.xml' 2026-08-03T18:33:28,887 adding 'galaxy/tools/bundled/filters/grep_1.0.1.xml' 2026-08-03T18:33:28,888 adding 'galaxy/tools/bundled/filters/gtf2bedgraph.xml' 2026-08-03T18:33:28,890 adding 'galaxy/tools/bundled/filters/gtf_to_bedgraph_converter.py' 2026-08-03T18:33:28,891 adding 'galaxy/tools/bundled/filters/headWrapper.xml' 2026-08-03T18:33:28,893 adding 'galaxy/tools/bundled/filters/join.py' 2026-08-03T18:33:28,895 adding 'galaxy/tools/bundled/filters/joiner.xml' 2026-08-03T18:33:28,896 adding 'galaxy/tools/bundled/filters/joiner2.xml' 2026-08-03T18:33:28,898 adding 'galaxy/tools/bundled/filters/lav_to_bed.py' 2026-08-03T18:33:28,899 adding 'galaxy/tools/bundled/filters/lav_to_bed.xml' 2026-08-03T18:33:28,900 adding 'galaxy/tools/bundled/filters/lav_to_bed_code.py' 2026-08-03T18:33:28,901 adding 'galaxy/tools/bundled/filters/mergeCols.py' 2026-08-03T18:33:28,903 adding 'galaxy/tools/bundled/filters/mergeCols.xml' 2026-08-03T18:33:28,904 adding 'galaxy/tools/bundled/filters/pasteWrapper.xml' 2026-08-03T18:33:28,906 adding 'galaxy/tools/bundled/filters/random_lines_two_pass.py' 2026-08-03T18:33:28,907 adding 'galaxy/tools/bundled/filters/randomlines.py' 2026-08-03T18:33:28,908 adding 'galaxy/tools/bundled/filters/randomlines.xml' 2026-08-03T18:33:28,910 adding 'galaxy/tools/bundled/filters/remove_beginning.xml' 2026-08-03T18:33:28,911 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.py' 2026-08-03T18:33:28,912 adding 'galaxy/tools/bundled/filters/secure_hash_message_digest.xml' 2026-08-03T18:33:28,918 adding 'galaxy/tools/bundled/filters/sff_extract.py' 2026-08-03T18:33:28,920 adding 'galaxy/tools/bundled/filters/sff_extractor.xml' 2026-08-03T18:33:28,922 adding 'galaxy/tools/bundled/filters/sorter.xml' 2026-08-03T18:33:28,923 adding 'galaxy/tools/bundled/filters/tailWrapper.xml' 2026-08-03T18:33:28,924 adding 'galaxy/tools/bundled/filters/trimmer.py' 2026-08-03T18:33:28,926 adding 'galaxy/tools/bundled/filters/trimmer.xml' 2026-08-03T18:33:28,927 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.py' 2026-08-03T18:33:28,929 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_exon_bed.xml' 2026-08-03T18:33:28,930 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.py' 2026-08-03T18:33:28,932 adding 'galaxy/tools/bundled/filters/ucsc_gene_bed_to_intron_bed.xml' 2026-08-03T18:33:28,933 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.py' 2026-08-03T18:33:28,934 adding 'galaxy/tools/bundled/filters/ucsc_gene_table_to_intervals.xml' 2026-08-03T18:33:28,936 adding 'galaxy/tools/bundled/filters/uniq.py' 2026-08-03T18:33:28,937 adding 'galaxy/tools/bundled/filters/uniq.xml' 2026-08-03T18:33:28,939 adding 'galaxy/tools/bundled/filters/wc_gnu.xml' 2026-08-03T18:33:28,940 adding 'galaxy/tools/bundled/filters/wig_to_bigwig.xml' 2026-08-03T18:33:28,941 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.py' 2026-08-03T18:33:28,943 adding 'galaxy/tools/bundled/filters/wiggle_to_simple.xml' 2026-08-03T18:33:28,944 adding 'galaxy/tools/bundled/filters/gff/__init__.py' 2026-08-03T18:33:28,946 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.py' 2026-08-03T18:33:28,947 adding 'galaxy/tools/bundled/filters/gff/extract_GFF_Features.xml' 2026-08-03T18:33:28,949 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.py' 2026-08-03T18:33:28,950 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_attribute.xml' 2026-08-03T18:33:28,952 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.py' 2026-08-03T18:33:28,953 adding 'galaxy/tools/bundled/filters/gff/gff_filter_by_feature_count.xml' 2026-08-03T18:33:28,954 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.py' 2026-08-03T18:33:28,956 adding 'galaxy/tools/bundled/filters/gff/gtf_filter_by_attribute_values_list.xml' 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'galaxy/tools/bundled/interactive/interactivetool_openrefine.xml' 2026-08-03T18:33:29,013 adding 'galaxy/tools/bundled/interactive/interactivetool_pangeo_notebook.xml' 2026-08-03T18:33:29,014 adding 'galaxy/tools/bundled/interactive/interactivetool_panoply.xml' 2026-08-03T18:33:29,015 adding 'galaxy/tools/bundled/interactive/interactivetool_paraview.xml' 2026-08-03T18:33:29,017 adding 'galaxy/tools/bundled/interactive/interactivetool_pavian.xml' 2026-08-03T18:33:29,018 adding 'galaxy/tools/bundled/interactive/interactivetool_phinch.xml' 2026-08-03T18:33:29,019 adding 'galaxy/tools/bundled/interactive/interactivetool_pyiron.xml' 2026-08-03T18:33:29,022 adding 'galaxy/tools/bundled/interactive/interactivetool_qiskit_jupyter_notebook.xml' 2026-08-03T18:33:29,024 adding 'galaxy/tools/bundled/interactive/interactivetool_radiant.xml' 2026-08-03T18:33:29,025 adding 'galaxy/tools/bundled/interactive/interactivetool_rstudio.xml' 2026-08-03T18:33:29,026 adding 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'galaxy/tools/bundled/maf/interval_maf_to_merged_fasta.xml' 2026-08-03T18:33:29,071 adding 'galaxy/tools/bundled/maf/macros.xml' 2026-08-03T18:33:29,072 adding 'galaxy/tools/bundled/maf/maf_by_block_number.py' 2026-08-03T18:33:29,073 adding 'galaxy/tools/bundled/maf/maf_by_block_number.xml' 2026-08-03T18:33:29,075 adding 'galaxy/tools/bundled/maf/maf_filter.py' 2026-08-03T18:33:29,076 adding 'galaxy/tools/bundled/maf/maf_filter.xml' 2026-08-03T18:33:29,078 adding 'galaxy/tools/bundled/maf/maf_limit_size.py' 2026-08-03T18:33:29,079 adding 'galaxy/tools/bundled/maf/maf_limit_size.xml' 2026-08-03T18:33:29,080 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.py' 2026-08-03T18:33:29,081 adding 'galaxy/tools/bundled/maf/maf_limit_to_species.xml' 2026-08-03T18:33:29,083 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.py' 2026-08-03T18:33:29,084 adding 'galaxy/tools/bundled/maf/maf_reverse_complement.xml' 2026-08-03T18:33:29,085 adding 'galaxy/tools/bundled/maf/maf_split_by_species.py' 2026-08-03T18:33:29,087 adding 'galaxy/tools/bundled/maf/maf_split_by_species.xml' 2026-08-03T18:33:29,089 adding 'galaxy/tools/bundled/maf/maf_stats.py' 2026-08-03T18:33:29,090 adding 'galaxy/tools/bundled/maf/maf_stats.xml' 2026-08-03T18:33:29,091 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.py' 2026-08-03T18:33:29,093 adding 'galaxy/tools/bundled/maf/maf_thread_for_species.xml' 2026-08-03T18:33:29,094 adding 'galaxy/tools/bundled/maf/maf_to_bed.py' 2026-08-03T18:33:29,096 adding 'galaxy/tools/bundled/maf/maf_to_bed.xml' 2026-08-03T18:33:29,097 adding 'galaxy/tools/bundled/maf/maf_to_bed_code.py' 2026-08-03T18:33:29,099 adding 'galaxy/tools/bundled/maf/maf_to_fasta.xml' 2026-08-03T18:33:29,100 adding 'galaxy/tools/bundled/maf/maf_to_fasta_concat.py' 2026-08-03T18:33:29,102 adding 'galaxy/tools/bundled/maf/maf_to_fasta_multiple_sets.py' 2026-08-03T18:33:29,103 adding 'galaxy/tools/bundled/maf/maf_to_interval.py' 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'galaxy/tools/bundled/next_gen_conversion/bwa_solid2fastq_modified.pl' 2026-08-03T18:33:29,127 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.py' 2026-08-03T18:33:29,128 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_conversions.xml' 2026-08-03T18:33:29,130 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.py' 2026-08-03T18:33:29,131 adding 'galaxy/tools/bundled/next_gen_conversion/fastq_gen_conv.xml' 2026-08-03T18:33:29,133 adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.py' 2026-08-03T18:33:29,135 adding 'galaxy/tools/bundled/next_gen_conversion/solid2fastq.xml' 2026-08-03T18:33:29,136 adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.py' 2026-08-03T18:33:29,137 adding 'galaxy/tools/bundled/next_gen_conversion/solid_to_fastq.xml' 2026-08-03T18:33:29,139 adding 'galaxy/tools/bundled/ngs_simulation/__init__.py' 2026-08-03T18:33:29,141 adding 'galaxy/tools/bundled/ngs_simulation/ngs_simulation.py' 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'galaxy_ext/container_monitor/__init__.py' 2026-08-03T18:33:29,477 adding 'galaxy_ext/container_monitor/monitor.py' 2026-08-03T18:33:29,478 adding 'galaxy_ext/expressions/__init__.py' 2026-08-03T18:33:29,480 adding 'galaxy_ext/expressions/handle_job.py' 2026-08-03T18:33:29,481 adding 'galaxy_ext/metadata/__init__.py' 2026-08-03T18:33:29,482 adding 'galaxy_ext/metadata/set_metadata.py' 2026-08-03T18:33:29,484 adding 'tool_shed_client/__init__.py' 2026-08-03T18:33:29,485 adding 'tool_shed_client/py.typed' 2026-08-03T18:33:29,487 adding 'tool_shed_client/trs_util.py' 2026-08-03T18:33:29,489 adding 'tool_shed_client/schema/__init__.py' 2026-08-03T18:33:29,490 adding 'tool_shed_client/schema/gen.sh' 2026-08-03T18:33:29,492 adding 'tool_shed_client/schema/trs.py' 2026-08-03T18:33:29,494 adding 'tool_shed_client/schema/trs_service_info.py' 2026-08-03T18:33:29,512 adding 'galaxy_app-26.1.0.dist-info/METADATA' 2026-08-03T18:33:29,515 adding 'galaxy_app-26.1.0.dist-info/WHEEL' 2026-08-03T18:33:29,516 adding 'galaxy_app-26.1.0.dist-info/entry_points.txt' 2026-08-03T18:33:29,516 adding 'galaxy_app-26.1.0.dist-info/top_level.txt' 2026-08-03T18:33:29,529 adding 'galaxy_app-26.1.0.dist-info/RECORD' 2026-08-03T18:33:29,578 removing build/bdist.linux-armv7l/wheel 2026-08-03T18:33:29,865 Building wheel for galaxy-app (pyproject.toml): finished with status 'done' 2026-08-03T18:33:29,911 Created wheel for galaxy-app: filename=galaxy_app-26.1.0-py3-none-any.whl size=2070149 sha256=f87d83700bbe9e41ea4da0bccd479384b92107a051066ddfc591aa9e41c5764d 2026-08-03T18:33:29,912 Stored in directory: /tmp/pip-ephem-wheel-cache-6p7c_hrn/wheels/d6/ae/1e/fbd870c18ca1d4e2ecefef0b3c0565c5e96defe72828c9707a 2026-08-03T18:33:29,993 Successfully built galaxy-app 2026-08-03T18:33:30,049 Removed build tracker: '/tmp/pip-build-tracker-qrd9wylr'