2026-08-10T23:41:19,052 Created temporary directory: /tmp/pip-ephem-wheel-cache-0snrjp6v 2026-08-10T23:41:19,053 Created temporary directory: /tmp/pip-build-tracker-o0f3et1p 2026-08-10T23:41:19,054 Initialized build tracking at /tmp/pip-build-tracker-o0f3et1p 2026-08-10T23:41:19,054 Created build tracker: /tmp/pip-build-tracker-o0f3et1p 2026-08-10T23:41:19,055 Entered build tracker: /tmp/pip-build-tracker-o0f3et1p 2026-08-10T23:41:19,056 Created temporary directory: /tmp/pip-wheel-5ua7dktg 2026-08-10T23:41:19,059 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-10T23:41:19,061 Created temporary directory: /tmp/pip-ephem-wheel-cache-3nes3s8x 2026-08-10T23:41:19,083 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-10T23:41:19,087 2 location(s) to search for versions of spt-pipeline: 2026-08-10T23:41:19,087 * https://pypi.org/simple/spt-pipeline/ 2026-08-10T23:41:19,087 * https://www.piwheels.org/simple/spt-pipeline/ 2026-08-10T23:41:19,088 Fetching project page and analyzing links: https://pypi.org/simple/spt-pipeline/ 2026-08-10T23:41:19,088 Getting page https://pypi.org/simple/spt-pipeline/ 2026-08-10T23:41:19,090 Found index url https://pypi.org/simple 2026-08-10T23:41:19,321 Fetched page https://pypi.org/simple/spt-pipeline/ as application/vnd.pypi.simple.v1+json 2026-08-10T23:41:19,323 Skipping link: No binaries permitted for spt-pipeline: https://files.pythonhosted.org/packages/02/51/68a602710d51c3ee777e01344be2afcbfb5edf3698591f1b2d7e147f7588/spt_pipeline-0.1.1-py3-none-any.whl (from https://pypi.org/simple/spt-pipeline/) (requires-python:>=3.10) 2026-08-10T23:41:19,324 Found link https://files.pythonhosted.org/packages/bb/e8/678f452af9204b47647b7051558460efc56346c12e506cd03918873a3085/spt_pipeline-0.1.1.tar.gz (from https://pypi.org/simple/spt-pipeline/) (requires-python:>=3.10), version: 0.1.1 2026-08-10T23:41:19,325 Skipping link: No binaries permitted for spt-pipeline: https://files.pythonhosted.org/packages/54/19/1fb4a9e49bba80c4bd7e8f87be8706ee4a870e601557e8404d90a46be6b1/spt_pipeline-2.0.0-py3-none-any.whl (from https://pypi.org/simple/spt-pipeline/) (requires-python:>=3.10) 2026-08-10T23:41:19,326 Found link https://files.pythonhosted.org/packages/f1/6f/9403bd89bfb86435b907e97953c3310aeb194e01f059dacdf16ccdbf7e6a/spt_pipeline-2.0.0.tar.gz (from https://pypi.org/simple/spt-pipeline/) (requires-python:>=3.10), version: 2.0.0 2026-08-10T23:41:19,327 Skipping link: No binaries permitted for spt-pipeline: https://files.pythonhosted.org/packages/45/b9/2d8aa620d51a05f066129f7b9e628df74bd934021dfe513acd1ef0b9180a/spt_pipeline-2.1.0-py3-none-any.whl (from https://pypi.org/simple/spt-pipeline/) (requires-python:>=3.10) 2026-08-10T23:41:19,328 Found link https://files.pythonhosted.org/packages/7a/d7/9dc332270608edbd98b6a48687d7a1cc308b1590a67cfa33fb6adf3decb9/spt_pipeline-2.1.0.tar.gz (from https://pypi.org/simple/spt-pipeline/) (requires-python:>=3.10), version: 2.1.0 2026-08-10T23:41:19,329 Fetching project page and analyzing links: https://www.piwheels.org/simple/spt-pipeline/ 2026-08-10T23:41:19,329 Getting page https://www.piwheels.org/simple/spt-pipeline/ 2026-08-10T23:41:19,330 Found index url https://www.piwheels.org/simple 2026-08-10T23:41:19,530 Fetched page https://www.piwheels.org/simple/spt-pipeline/ as text/html 2026-08-10T23:41:19,532 Skipping link: No binaries permitted for spt-pipeline: https://archive1.piwheels.org/simple/spt-pipeline/spt_pipeline-2.0.0-py3-none-any.whl#sha256=7d4d0dc7d5f7724d906390c44e05a5b47f7e349701abbe7cd651502975c2213b (from https://www.piwheels.org/simple/spt-pipeline/) (requires-python:>=3.10) 2026-08-10T23:41:19,532 Skipping link: No binaries permitted for spt-pipeline: https://archive1.piwheels.org/simple/spt-pipeline/spt_pipeline-0.1.1-py3-none-any.whl#sha256=c39dcdc25c9374ee12389382b8d334e57662f7c5c697457e12021e49a1a67e01 (from https://www.piwheels.org/simple/spt-pipeline/) (requires-python:>=3.10) 2026-08-10T23:41:19,533 Skipping link: not a file: https://www.piwheels.org/simple/spt-pipeline/ 2026-08-10T23:41:19,534 Skipping link: not a file: https://pypi.org/simple/spt-pipeline/ 2026-08-10T23:41:19,554 Given no hashes to check 1 links for project 'spt-pipeline': discarding no candidates 2026-08-10T23:41:19,574 Collecting spt-pipeline==2.1.0 2026-08-10T23:41:19,576 Created temporary directory: /tmp/pip-unpack-9nhrs0aq 2026-08-10T23:41:19,733 Downloading spt_pipeline-2.1.0.tar.gz (261 kB) 2026-08-10T23:41:19,975 Added spt-pipeline==2.1.0 from https://files.pythonhosted.org/packages/7a/d7/9dc332270608edbd98b6a48687d7a1cc308b1590a67cfa33fb6adf3decb9/spt_pipeline-2.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-o0f3et1p' 2026-08-10T23:41:19,982 Created temporary directory: /tmp/pip-build-env-dfi0bqju 2026-08-10T23:41:19,987 Installing build dependencies: started 2026-08-10T23:41:19,988 Running command pip subprocess to install build dependencies 2026-08-10T23:41:21,125 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-08-10T23:41:22,001 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-10T23:41:22,025 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-10T23:41:23,817 Collecting setuptools>=68 2026-08-10T23:41:23,818 Obtaining dependency information for setuptools>=68 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-08-10T23:41:23,832 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-08-10T23:41:24,070 Collecting wheel 2026-08-10T23:41:24,071 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata 2026-08-10T23:41:24,083 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 2026-08-10T23:41:24,269 Collecting packaging>=24.0 2026-08-10T23:41:24,270 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-08-10T23:41:24,282 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-08-10T23:41:24,471 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-08-10T23:41:24,491 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-08-10T23:41:24,562 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-10T23:41:24,597 Using cached https://www.piwheels.org/simple/wheel/wheel-0.47.0-py3-none-any.whl (32 kB) 2026-08-10T23:41:24,625 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-08-10T23:41:24,719 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-10T23:41:27,492 Installing collected packages: setuptools, packaging, wheel 2026-08-10T23:41:30,270 Creating /tmp/pip-build-env-dfi0bqju/overlay/local/bin 2026-08-10T23:41:30,272 changing mode of /tmp/pip-build-env-dfi0bqju/overlay/local/bin/wheel to 755 2026-08-10T23:41:30,293 Successfully installed packaging-26.3 setuptools-84.0.0 wheel-0.47.0 2026-08-10T23:41:30,579 Installing build dependencies: finished with status 'done' 2026-08-10T23:41:30,586 Getting requirements to build wheel: started 2026-08-10T23:41:30,587 Running command Getting requirements to build wheel 2026-08-10T23:41:31,206 /tmp/pip-build-env-dfi0bqju/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-08-10T23:41:31,206 !! 2026-08-10T23:41:31,207 ******************************************************************************** 2026-08-10T23:41:31,208 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-08-10T23:41:31,209 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-08-10T23:41:31,209 or your builds will no longer be supported. 2026-08-10T23:41:31,210 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-10T23:41:31,211 ******************************************************************************** 2026-08-10T23:41:31,212 !! 2026-08-10T23:41:31,212 corresp(dist, value, root_dir) 2026-08-10T23:41:31,287 /tmp/pip-build-env-dfi0bqju/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-10T23:41:31,288 !! 2026-08-10T23:41:31,289 ******************************************************************************** 2026-08-10T23:41:31,289 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-10T23:41:31,290 License :: OSI Approved :: MIT License 2026-08-10T23:41:31,291 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-10T23:41:31,292 ******************************************************************************** 2026-08-10T23:41:31,293 !! 2026-08-10T23:41:31,294 dist._finalize_license_expression() 2026-08-10T23:41:31,294 /tmp/pip-build-env-dfi0bqju/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-10T23:41:31,295 !! 2026-08-10T23:41:31,296 ******************************************************************************** 2026-08-10T23:41:31,297 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-10T23:41:31,298 License :: OSI Approved :: MIT License 2026-08-10T23:41:31,299 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-10T23:41:31,300 ******************************************************************************** 2026-08-10T23:41:31,301 !! 2026-08-10T23:41:31,302 self._finalize_license_expression() 2026-08-10T23:41:31,302 running egg_info 2026-08-10T23:41:31,304 writing src/spt_pipeline.egg-info/PKG-INFO 2026-08-10T23:41:31,312 writing dependency_links to src/spt_pipeline.egg-info/dependency_links.txt 2026-08-10T23:41:31,314 writing entry points to src/spt_pipeline.egg-info/entry_points.txt 2026-08-10T23:41:31,319 writing requirements to src/spt_pipeline.egg-info/requires.txt 2026-08-10T23:41:31,320 writing top-level names to src/spt_pipeline.egg-info/top_level.txt 2026-08-10T23:41:31,345 reading manifest file 'src/spt_pipeline.egg-info/SOURCES.txt' 2026-08-10T23:41:31,350 reading manifest template 'MANIFEST.in' 2026-08-10T23:41:31,372 no previously-included directories found matching 'retired' 2026-08-10T23:41:31,373 no previously-included directories found matching 'dist' 2026-08-10T23:41:31,374 no previously-included directories found matching 'examples' 2026-08-10T23:41:31,375 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-08-10T23:41:31,375 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2026-08-10T23:41:31,376 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-08-10T23:41:31,377 adding license file 'LICENSE' 2026-08-10T23:41:31,381 writing manifest file 'src/spt_pipeline.egg-info/SOURCES.txt' 2026-08-10T23:41:31,480 Getting requirements to build wheel: finished with status 'done' 2026-08-10T23:41:31,483 Created temporary directory: /tmp/pip-modern-metadata-j1qnnk8h 2026-08-10T23:41:31,486 Preparing metadata (pyproject.toml): started 2026-08-10T23:41:31,487 Running command Preparing metadata (pyproject.toml) 2026-08-10T23:41:32,056 /tmp/pip-build-env-dfi0bqju/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-08-10T23:41:32,057 !! 2026-08-10T23:41:32,058 ******************************************************************************** 2026-08-10T23:41:32,058 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-08-10T23:41:32,059 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-08-10T23:41:32,060 or your builds will no longer be supported. 2026-08-10T23:41:32,061 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-10T23:41:32,061 ******************************************************************************** 2026-08-10T23:41:32,062 !! 2026-08-10T23:41:32,063 corresp(dist, value, root_dir) 2026-08-10T23:41:32,133 /tmp/pip-build-env-dfi0bqju/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-10T23:41:32,133 !! 2026-08-10T23:41:32,134 ******************************************************************************** 2026-08-10T23:41:32,135 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-10T23:41:32,136 License :: OSI Approved :: MIT License 2026-08-10T23:41:32,137 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-10T23:41:32,138 ******************************************************************************** 2026-08-10T23:41:32,139 !! 2026-08-10T23:41:32,139 dist._finalize_license_expression() 2026-08-10T23:41:32,140 /tmp/pip-build-env-dfi0bqju/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-10T23:41:32,141 !! 2026-08-10T23:41:32,142 ******************************************************************************** 2026-08-10T23:41:32,142 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-10T23:41:32,143 License :: OSI Approved :: MIT License 2026-08-10T23:41:32,145 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-10T23:41:32,145 ******************************************************************************** 2026-08-10T23:41:32,146 !! 2026-08-10T23:41:32,147 self._finalize_license_expression() 2026-08-10T23:41:32,147 running dist_info 2026-08-10T23:41:32,154 creating /tmp/pip-modern-metadata-j1qnnk8h/spt_pipeline.egg-info 2026-08-10T23:41:32,155 writing /tmp/pip-modern-metadata-j1qnnk8h/spt_pipeline.egg-info/PKG-INFO 2026-08-10T23:41:32,165 writing dependency_links to /tmp/pip-modern-metadata-j1qnnk8h/spt_pipeline.egg-info/dependency_links.txt 2026-08-10T23:41:32,167 writing entry points to /tmp/pip-modern-metadata-j1qnnk8h/spt_pipeline.egg-info/entry_points.txt 2026-08-10T23:41:32,171 writing requirements to /tmp/pip-modern-metadata-j1qnnk8h/spt_pipeline.egg-info/requires.txt 2026-08-10T23:41:32,173 writing top-level names to /tmp/pip-modern-metadata-j1qnnk8h/spt_pipeline.egg-info/top_level.txt 2026-08-10T23:41:32,174 writing manifest file '/tmp/pip-modern-metadata-j1qnnk8h/spt_pipeline.egg-info/SOURCES.txt' 2026-08-10T23:41:32,196 reading manifest file '/tmp/pip-modern-metadata-j1qnnk8h/spt_pipeline.egg-info/SOURCES.txt' 2026-08-10T23:41:32,198 reading manifest template 'MANIFEST.in' 2026-08-10T23:41:32,219 no previously-included directories found matching 'retired' 2026-08-10T23:41:32,220 no previously-included directories found matching 'dist' 2026-08-10T23:41:32,221 no previously-included directories found matching 'examples' 2026-08-10T23:41:32,221 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-08-10T23:41:32,222 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2026-08-10T23:41:32,223 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-08-10T23:41:32,223 adding license file 'LICENSE' 2026-08-10T23:41:32,227 writing manifest file '/tmp/pip-modern-metadata-j1qnnk8h/spt_pipeline.egg-info/SOURCES.txt' 2026-08-10T23:41:32,228 creating '/tmp/pip-modern-metadata-j1qnnk8h/spt_pipeline-2.1.0.dist-info' 2026-08-10T23:41:32,358 Preparing metadata (pyproject.toml): finished with status 'done' 2026-08-10T23:41:32,365 Source in /tmp/pip-wheel-5ua7dktg/spt-pipeline_6ba5685d77e94fd9b4e6ac40bfb7a6f5 has version 2.1.0, which satisfies requirement spt-pipeline==2.1.0 from https://files.pythonhosted.org/packages/7a/d7/9dc332270608edbd98b6a48687d7a1cc308b1590a67cfa33fb6adf3decb9/spt_pipeline-2.1.0.tar.gz 2026-08-10T23:41:32,366 Removed spt-pipeline==2.1.0 from https://files.pythonhosted.org/packages/7a/d7/9dc332270608edbd98b6a48687d7a1cc308b1590a67cfa33fb6adf3decb9/spt_pipeline-2.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-o0f3et1p' 2026-08-10T23:41:32,376 Created temporary directory: /tmp/pip-unpack-lppx2w27 2026-08-10T23:41:32,377 Building wheels for collected packages: spt-pipeline 2026-08-10T23:41:32,382 Created temporary directory: /tmp/pip-wheel-maybcksw 2026-08-10T23:41:32,382 Destination directory: /tmp/pip-wheel-maybcksw 2026-08-10T23:41:32,384 Building wheel for spt-pipeline (pyproject.toml): started 2026-08-10T23:41:32,386 Running command Building wheel for spt-pipeline (pyproject.toml) 2026-08-10T23:41:32,949 /tmp/pip-build-env-dfi0bqju/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-08-10T23:41:32,949 !! 2026-08-10T23:41:32,950 ******************************************************************************** 2026-08-10T23:41:32,951 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-08-10T23:41:32,952 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-08-10T23:41:32,953 or your builds will no longer be supported. 2026-08-10T23:41:32,954 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-10T23:41:32,955 ******************************************************************************** 2026-08-10T23:41:32,956 !! 2026-08-10T23:41:32,957 corresp(dist, value, root_dir) 2026-08-10T23:41:33,020 /tmp/pip-build-env-dfi0bqju/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-10T23:41:33,021 !! 2026-08-10T23:41:33,022 ******************************************************************************** 2026-08-10T23:41:33,023 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-10T23:41:33,024 License :: OSI Approved :: MIT License 2026-08-10T23:41:33,025 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-10T23:41:33,026 ******************************************************************************** 2026-08-10T23:41:33,028 !! 2026-08-10T23:41:33,028 dist._finalize_license_expression() 2026-08-10T23:41:33,029 /tmp/pip-build-env-dfi0bqju/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-10T23:41:33,029 !! 2026-08-10T23:41:33,030 ******************************************************************************** 2026-08-10T23:41:33,030 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-10T23:41:33,031 License :: OSI Approved :: MIT License 2026-08-10T23:41:33,032 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-10T23:41:33,033 ******************************************************************************** 2026-08-10T23:41:33,034 !! 2026-08-10T23:41:33,034 self._finalize_license_expression() 2026-08-10T23:41:33,034 running bdist_wheel 2026-08-10T23:41:33,045 running build 2026-08-10T23:41:33,045 running build_py 2026-08-10T23:41:33,052 creating build/lib/spt_pipeline 2026-08-10T23:41:33,054 copying src/spt_pipeline/run_log.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,056 copying src/spt_pipeline/track_metrics.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,059 copying src/spt_pipeline/diffusion.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,061 copying src/spt_pipeline/__init__.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,063 copying src/spt_pipeline/legacy.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,068 copying src/spt_pipeline/qc.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,070 copying src/spt_pipeline/colocalization.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,073 copying src/spt_pipeline/marker.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,076 copying src/spt_pipeline/bins.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,078 copying src/spt_pipeline/cli.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,081 copying src/spt_pipeline/filters.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,084 copying src/spt_pipeline/plotting.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,087 copying src/spt_pipeline/histograms.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,089 copying src/spt_pipeline/tracking.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,092 copying src/spt_pipeline/statistics.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,095 copying src/spt_pipeline/compare.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,099 copying src/spt_pipeline/imaging.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,101 copying src/spt_pipeline/manifest.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,104 copying src/spt_pipeline/gmm.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,106 copying src/spt_pipeline/utils.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,109 copying src/spt_pipeline/tau_steps.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,111 copying src/spt_pipeline/metadata.py -> build/lib/spt_pipeline 2026-08-10T23:41:33,115 creating build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,116 copying src/spt_pipeline/ergem/__init__.py -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,118 copying src/spt_pipeline/ergem/condition_map.py -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,121 copying src/spt_pipeline/ergem/expression.py -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,123 copying src/spt_pipeline/ergem/ingest.py -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,126 copying src/spt_pipeline/ergem/_ficd_cell_intensity.py -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,129 copying src/spt_pipeline/ergem/cli.py -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,132 copying src/spt_pipeline/ergem/figures.py -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,134 copying src/spt_pipeline/ergem/crosscorr.py -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,137 copying src/spt_pipeline/ergem/__main__.py -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,139 copying src/spt_pipeline/ergem/contrasts.py -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,141 copying src/spt_pipeline/ergem/_util.py -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,143 creating build/lib/spt_pipeline/advanced 2026-08-10T23:41:33,144 copying src/spt_pipeline/advanced/__init__.py -> build/lib/spt_pipeline/advanced 2026-08-10T23:41:33,147 copying src/spt_pipeline/advanced/_kernels.py -> build/lib/spt_pipeline/advanced 2026-08-10T23:41:33,150 running egg_info 2026-08-10T23:41:33,159 writing src/spt_pipeline.egg-info/PKG-INFO 2026-08-10T23:41:33,167 writing dependency_links to src/spt_pipeline.egg-info/dependency_links.txt 2026-08-10T23:41:33,169 writing entry points to src/spt_pipeline.egg-info/entry_points.txt 2026-08-10T23:41:33,173 writing requirements to src/spt_pipeline.egg-info/requires.txt 2026-08-10T23:41:33,174 writing top-level names to src/spt_pipeline.egg-info/top_level.txt 2026-08-10T23:41:33,189 reading manifest file 'src/spt_pipeline.egg-info/SOURCES.txt' 2026-08-10T23:41:33,193 reading manifest template 'MANIFEST.in' 2026-08-10T23:41:33,216 no previously-included directories found matching 'retired' 2026-08-10T23:41:33,216 no previously-included directories found matching 'dist' 2026-08-10T23:41:33,217 no previously-included directories found matching 'examples' 2026-08-10T23:41:33,218 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-08-10T23:41:33,219 warning: no previously-included files matching '__pycache__/*' found anywhere in distribution 2026-08-10T23:41:33,219 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-08-10T23:41:33,220 adding license file 'LICENSE' 2026-08-10T23:41:33,224 writing manifest file 'src/spt_pipeline.egg-info/SOURCES.txt' 2026-08-10T23:41:33,229 copying src/spt_pipeline/ergem/CHANGELOG.md -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,232 copying src/spt_pipeline/ergem/EXPRESSION_v2.md -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,234 copying src/spt_pipeline/ergem/MANIFEST.sha256 -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,236 copying src/spt_pipeline/ergem/README.md -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,239 copying src/spt_pipeline/ergem/VALIDATION.md -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,241 copying src/spt_pipeline/ergem/VERSION.txt -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,243 copying src/spt_pipeline/ergem/requirements.txt -> build/lib/spt_pipeline/ergem 2026-08-10T23:41:33,256 installing to build/bdist.linux-armv7l/wheel 2026-08-10T23:41:33,257 running install 2026-08-10T23:41:33,280 running install_lib 2026-08-10T23:41:33,286 creating build/bdist.linux-armv7l/wheel 2026-08-10T23:41:33,288 creating build/bdist.linux-armv7l/wheel/spt_pipeline 2026-08-10T23:41:33,290 copying build/lib/spt_pipeline/run_log.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,292 copying build/lib/spt_pipeline/track_metrics.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,294 copying build/lib/spt_pipeline/diffusion.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,296 copying build/lib/spt_pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,298 copying build/lib/spt_pipeline/legacy.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,302 copying build/lib/spt_pipeline/qc.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,305 copying build/lib/spt_pipeline/colocalization.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,308 copying build/lib/spt_pipeline/marker.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,310 copying build/lib/spt_pipeline/bins.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,312 copying build/lib/spt_pipeline/cli.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,316 creating build/bdist.linux-armv7l/wheel/spt_pipeline/ergem 2026-08-10T23:41:33,317 copying build/lib/spt_pipeline/ergem/__init__.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,319 copying build/lib/spt_pipeline/ergem/condition_map.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,321 copying build/lib/spt_pipeline/ergem/expression.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,323 copying build/lib/spt_pipeline/ergem/README.md -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,325 copying build/lib/spt_pipeline/ergem/VALIDATION.md -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,327 copying build/lib/spt_pipeline/ergem/ingest.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,329 copying build/lib/spt_pipeline/ergem/requirements.txt -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,331 copying build/lib/spt_pipeline/ergem/CHANGELOG.md -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,333 copying build/lib/spt_pipeline/ergem/_ficd_cell_intensity.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,337 copying build/lib/spt_pipeline/ergem/cli.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,339 copying build/lib/spt_pipeline/ergem/MANIFEST.sha256 -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,341 copying build/lib/spt_pipeline/ergem/VERSION.txt -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,343 copying build/lib/spt_pipeline/ergem/figures.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,345 copying build/lib/spt_pipeline/ergem/crosscorr.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,348 copying build/lib/spt_pipeline/ergem/EXPRESSION_v2.md -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,349 copying build/lib/spt_pipeline/ergem/__main__.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,351 copying build/lib/spt_pipeline/ergem/contrasts.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,354 copying build/lib/spt_pipeline/ergem/_util.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/ergem 2026-08-10T23:41:33,356 copying build/lib/spt_pipeline/filters.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,358 copying build/lib/spt_pipeline/plotting.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,361 copying build/lib/spt_pipeline/histograms.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,364 copying build/lib/spt_pipeline/tracking.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,366 copying build/lib/spt_pipeline/statistics.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,369 copying build/lib/spt_pipeline/compare.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,373 copying build/lib/spt_pipeline/imaging.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,375 creating build/bdist.linux-armv7l/wheel/spt_pipeline/advanced 2026-08-10T23:41:33,376 copying build/lib/spt_pipeline/advanced/__init__.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/advanced 2026-08-10T23:41:33,379 copying build/lib/spt_pipeline/advanced/_kernels.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline/advanced 2026-08-10T23:41:33,382 copying build/lib/spt_pipeline/manifest.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,385 copying build/lib/spt_pipeline/gmm.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,387 copying build/lib/spt_pipeline/utils.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,390 copying build/lib/spt_pipeline/tau_steps.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,392 copying build/lib/spt_pipeline/metadata.py -> build/bdist.linux-armv7l/wheel/./spt_pipeline 2026-08-10T23:41:33,394 running install_egg_info 2026-08-10T23:41:33,399 Copying src/spt_pipeline.egg-info to build/bdist.linux-armv7l/wheel/./spt_pipeline-2.1.0-py3.11.egg-info 2026-08-10T23:41:33,411 running install_scripts 2026-08-10T23:41:33,423 creating build/bdist.linux-armv7l/wheel/spt_pipeline-2.1.0.dist-info/WHEEL 2026-08-10T23:41:33,426 creating '/tmp/pip-wheel-maybcksw/.tmp-9sfsgwf4/spt_pipeline-2.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-08-10T23:41:33,429 adding 'spt_pipeline/__init__.py' 2026-08-10T23:41:33,430 adding 'spt_pipeline/bins.py' 2026-08-10T23:41:33,435 adding 'spt_pipeline/cli.py' 2026-08-10T23:41:33,440 adding 'spt_pipeline/colocalization.py' 2026-08-10T23:41:33,449 adding 'spt_pipeline/compare.py' 2026-08-10T23:41:33,452 adding 'spt_pipeline/diffusion.py' 2026-08-10T23:41:33,454 adding 'spt_pipeline/filters.py' 2026-08-10T23:41:33,455 adding 'spt_pipeline/gmm.py' 2026-08-10T23:41:33,457 adding 'spt_pipeline/histograms.py' 2026-08-10T23:41:33,459 adding 'spt_pipeline/imaging.py' 2026-08-10T23:41:33,472 adding 'spt_pipeline/legacy.py' 2026-08-10T23:41:33,477 adding 'spt_pipeline/manifest.py' 2026-08-10T23:41:33,481 adding 'spt_pipeline/marker.py' 2026-08-10T23:41:33,483 adding 'spt_pipeline/metadata.py' 2026-08-10T23:41:33,488 adding 'spt_pipeline/plotting.py' 2026-08-10T23:41:33,490 adding 'spt_pipeline/qc.py' 2026-08-10T23:41:33,491 adding 'spt_pipeline/run_log.py' 2026-08-10T23:41:33,494 adding 'spt_pipeline/statistics.py' 2026-08-10T23:41:33,496 adding 'spt_pipeline/tau_steps.py' 2026-08-10T23:41:33,498 adding 'spt_pipeline/track_metrics.py' 2026-08-10T23:41:33,501 adding 'spt_pipeline/tracking.py' 2026-08-10T23:41:33,503 adding 'spt_pipeline/utils.py' 2026-08-10T23:41:33,507 adding 'spt_pipeline/advanced/__init__.py' 2026-08-10T23:41:33,510 adding 'spt_pipeline/advanced/_kernels.py' 2026-08-10T23:41:33,513 adding 'spt_pipeline/ergem/CHANGELOG.md' 2026-08-10T23:41:33,514 adding 'spt_pipeline/ergem/EXPRESSION_v2.md' 2026-08-10T23:41:33,516 adding 'spt_pipeline/ergem/MANIFEST.sha256' 2026-08-10T23:41:33,518 adding 'spt_pipeline/ergem/README.md' 2026-08-10T23:41:33,519 adding 'spt_pipeline/ergem/VALIDATION.md' 2026-08-10T23:41:33,520 adding 'spt_pipeline/ergem/VERSION.txt' 2026-08-10T23:41:33,522 adding 'spt_pipeline/ergem/__init__.py' 2026-08-10T23:41:33,523 adding 'spt_pipeline/ergem/__main__.py' 2026-08-10T23:41:33,530 adding 'spt_pipeline/ergem/_ficd_cell_intensity.py' 2026-08-10T23:41:33,532 adding 'spt_pipeline/ergem/_util.py' 2026-08-10T23:41:33,534 adding 'spt_pipeline/ergem/cli.py' 2026-08-10T23:41:33,536 adding 'spt_pipeline/ergem/condition_map.py' 2026-08-10T23:41:33,538 adding 'spt_pipeline/ergem/contrasts.py' 2026-08-10T23:41:33,540 adding 'spt_pipeline/ergem/crosscorr.py' 2026-08-10T23:41:33,542 adding 'spt_pipeline/ergem/expression.py' 2026-08-10T23:41:33,544 adding 'spt_pipeline/ergem/figures.py' 2026-08-10T23:41:33,546 adding 'spt_pipeline/ergem/ingest.py' 2026-08-10T23:41:33,548 adding 'spt_pipeline/ergem/requirements.txt' 2026-08-10T23:41:33,550 adding 'spt_pipeline-2.1.0.dist-info/licenses/LICENSE' 2026-08-10T23:41:33,556 adding 'spt_pipeline-2.1.0.dist-info/METADATA' 2026-08-10T23:41:33,557 adding 'spt_pipeline-2.1.0.dist-info/WHEEL' 2026-08-10T23:41:33,558 adding 'spt_pipeline-2.1.0.dist-info/entry_points.txt' 2026-08-10T23:41:33,559 adding 'spt_pipeline-2.1.0.dist-info/top_level.txt' 2026-08-10T23:41:33,560 adding 'spt_pipeline-2.1.0.dist-info/RECORD' 2026-08-10T23:41:33,564 removing build/bdist.linux-armv7l/wheel 2026-08-10T23:41:33,677 Building wheel for spt-pipeline (pyproject.toml): finished with status 'done' 2026-08-10T23:41:33,688 Created wheel for spt-pipeline: filename=spt_pipeline-2.1.0-py3-none-any.whl size=235283 sha256=2d3d9277d72d2d6b057ce3a1a919c3d68af142a4cdff051ebf3755d46a47b2ea 2026-08-10T23:41:33,690 Stored in directory: /tmp/pip-ephem-wheel-cache-3nes3s8x/wheels/a3/13/6e/b6df750e15ddfc1af0a41b5e173d330731bbd1df9e3f2a9908 2026-08-10T23:41:33,709 Successfully built spt-pipeline 2026-08-10T23:41:33,721 Removed build tracker: '/tmp/pip-build-tracker-o0f3et1p'