2026-08-14T03:04:23,257 Created temporary directory: /tmp/pip-ephem-wheel-cache-t5_9btls 2026-08-14T03:04:23,259 Created temporary directory: /tmp/pip-build-tracker-d8n3js21 2026-08-14T03:04:23,259 Initialized build tracking at /tmp/pip-build-tracker-d8n3js21 2026-08-14T03:04:23,260 Created build tracker: /tmp/pip-build-tracker-d8n3js21 2026-08-14T03:04:23,260 Entered build tracker: /tmp/pip-build-tracker-d8n3js21 2026-08-14T03:04:23,261 Created temporary directory: /tmp/pip-wheel-95c_33b3 2026-08-14T03:04:23,264 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-14T03:04:23,266 Created temporary directory: /tmp/pip-ephem-wheel-cache-p0fr3fgb 2026-08-14T03:04:23,290 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-14T03:04:23,294 2 location(s) to search for versions of cpgtools: 2026-08-14T03:04:23,294 * https://pypi.org/simple/cpgtools/ 2026-08-14T03:04:23,294 * https://www.piwheels.org/simple/cpgtools/ 2026-08-14T03:04:23,295 Fetching project page and analyzing links: https://pypi.org/simple/cpgtools/ 2026-08-14T03:04:23,295 Getting page https://pypi.org/simple/cpgtools/ 2026-08-14T03:04:23,297 Found index url https://pypi.org/simple 2026-08-14T03:04:23,531 Fetched page https://pypi.org/simple/cpgtools/ as application/vnd.pypi.simple.v1+json 2026-08-14T03:04:23,542 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/09/69/e58e01a23a5e000feac4451733e88796bd4f197437bcb24a16671d7b537d/cpgtools-0.1.1-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,543 Found link https://files.pythonhosted.org/packages/08/45/e21cbd0ce031bc536914cc31ed007cbf5cd13ec7fd04ee6b1da87db44bd5/cpgtools-0.1.1.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 0.1.1 2026-08-14T03:04:23,544 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/ef/bb/39641c5ebc7c1503fa5907e41e9bafde3804b3483dbd6686bd1d55fd442a/cpgtools-0.1.2-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,545 Found link https://files.pythonhosted.org/packages/d6/6a/4eea8413c5b702430132491a418c62b0adbac2f1299922b564084db84aab/cpgtools-0.1.2.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 0.1.2 2026-08-14T03:04:23,546 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/d1/dc/b1a0aa64fc3d07c808bf6ce38d96204926f0b5c17a6db45a8f1b9e1d81a6/cpgtools-0.1.3-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,547 Found link https://files.pythonhosted.org/packages/b5/85/91f6d1e0b869aa657ed8de8ffc35c5903cb7ac91f48b3d236b41cc8ea87c/cpgtools-0.1.3.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 0.1.3 2026-08-14T03:04:23,548 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/73/bd/473b18f1e1090d4dd9d60e8f98ec5e4001ae36b100f2bb4943c3ab03fce6/cpgtools-0.1.4-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,549 Found link https://files.pythonhosted.org/packages/5d/e7/c5c5c09a6585df78babfcf46472d922a9b8edde158474f015f3575c3cb30/cpgtools-0.1.4.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 0.1.4 2026-08-14T03:04:23,549 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/d5/88/5769a9477293bf3ad0eeb2cc34e5cba957a03090a863bdab38efd3050906/cpgtools-0.1.5-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,550 Found link https://files.pythonhosted.org/packages/4b/24/0c5051527badea465ef1a9775752a1cc6b814bbb870d5184cdca8ff4a50f/cpgtools-0.1.5.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 0.1.5 2026-08-14T03:04:23,551 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/dd/32/8e9544324c2bb9a40b89afc015c8b2eea2e5382220ff5b44d084bd281407/cpgtools-0.1.6-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,553 Found link https://files.pythonhosted.org/packages/59/e2/79e6d6c137baf1cec3265ba7cc562a060bdfb8d0ed243b29e1d57dd1c1f3/cpgtools-0.1.6.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 0.1.6 2026-08-14T03:04:23,553 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/55/8a/405f16cbb1862e481902ad278e24e14151b6b6d5320e91303b42e8bce63b/cpgtools-0.1.7-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,554 Found link https://files.pythonhosted.org/packages/cb/52/05ce9227c3c9cd7a7787e5cd078f13e7b62b8834783f0981d8fdaec0a9bf/cpgtools-0.1.7.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 0.1.7 2026-08-14T03:04:23,555 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/32/f0/5bb46370466c1991c0dbd227d4d59a330cf0b867c78edbbc4aebf3083921/cpgtools-0.1.8-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,555 Found link https://files.pythonhosted.org/packages/b2/74/5707352af34460e531281b6450418312a7ba1bb61b7f0c5f623230938ca9/cpgtools-0.1.8.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 0.1.8 2026-08-14T03:04:23,556 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/89/70/af59e8f2bdaaea73fef22c886944de642a852beaaed6a39da569ffee72d8/cpgtools-1.0.0-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,557 Found link https://files.pythonhosted.org/packages/ec/53/90d7193985afb84c0aebf053abfc7ea4511a371cd2981121fedaecd56c89/cpgtools-1.0.0.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.0.0 2026-08-14T03:04:23,558 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/2e/a9/d1118d0633ce194f49a7968519319c5bffa881f60ff73915e8744695eaaf/cpgtools-1.0.1-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,559 Found link https://files.pythonhosted.org/packages/70/09/8d28c8afa87818a503bf1f0e0f06ac82e6e3ae330c5ae4600c3b6f1e503e/cpgtools-1.0.1.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.0.1 2026-08-14T03:04:23,559 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/f0/fc/10f47593b532105f9742ce7521f8cda0ee5a8f8edc397a61db3fe2f397ce/cpgtools-1.0.2-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,560 Found link https://files.pythonhosted.org/packages/1b/0c/9f17dd4f4052e1de5eb870df34a16c7f8dcb72a976a051aea6cad41dc232/cpgtools-1.0.2.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.0.2 2026-08-14T03:04:23,561 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/f0/87/422de2761281c22510cfddc8cfc111182864179a4ae0433b376fe6625c37/cpgtools-1.0.3-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,562 Found link https://files.pythonhosted.org/packages/85/36/e97f2f9d196cd1e91c0a30320f01791b703b1394f074e2ae3b822cd3efba/cpgtools-1.0.3.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.0.3 2026-08-14T03:04:23,562 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/07/64/f29b295330a5b83e7397f64c60d1b5a969c52fb8eaded228ef02ff25bfe8/cpgtools-1.0.4-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,563 Found link https://files.pythonhosted.org/packages/28/5a/73f43d5d90eb7a1c43173010ba7f02b4c639bb70a02702b8d8eef378d2dd/cpgtools-1.0.4.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.0.4 2026-08-14T03:04:23,564 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/85/95/8c21403c4f073d71c88ed53253ae36f1aa02ffd71d9d550fb96ceda4faf7/cpgtools-1.0.5-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,565 Found link https://files.pythonhosted.org/packages/50/0c/c27e13bbcfd511633acab6ce1f19201063ad07eeae5cdac2ac8d3d043ff2/cpgtools-1.0.5.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.0.5 2026-08-14T03:04:23,566 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/52/f3/6f3dab5702b7b2cf12435299e6218a6fedbfbefc6de5ba3741c26432a429/cpgtools-1.0.6-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,566 Found link https://files.pythonhosted.org/packages/01/88/9d62e634ef9e9cd641c2d983a2aba7b62d29f37f8aef60a8f0f8b0eafb8d/cpgtools-1.0.6.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.0.6 2026-08-14T03:04:23,567 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/ff/8d/eacc53a31ed3dfe53aa4a6c35a9a1432e8463b1f2be93d0da61729c8d4fb/cpgtools-1.0.7-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,568 Found link https://files.pythonhosted.org/packages/27/38/d5478c2f8f13d3b1d25aff4fd53b335df28145e9fc3e767246247fe955ab/cpgtools-1.0.7.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.0.7 2026-08-14T03:04:23,568 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/f3/b7/e3fb5a0950befb02bb9a980762e9895e1d99002c4cd08862f371f9a80202/cpgtools-1.0.8-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,569 Found link https://files.pythonhosted.org/packages/e8/74/0f24f3b7651152620b94426fb2639ead77f6ef6eae77474510b531fa15ac/cpgtools-1.0.8.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.0.8 2026-08-14T03:04:23,570 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/37/f2/890152ee36ae4f15a919416a85c7b097b71eb638c4d3e6196b958473c5b4/cpgtools-1.0.9-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,571 Found link https://files.pythonhosted.org/packages/26/ec/5a23cdf0bcb2c412a89fa14a121d79af66899ba8a775106c3b17a0772cf3/cpgtools-1.0.9.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.0.9 2026-08-14T03:04:23,571 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/ad/20/ccedd1d6cc236219f9db1def9e9405216ce8f7dcb8053458109149276698/cpgtools-1.10.0-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,572 Found link https://files.pythonhosted.org/packages/19/ef/b01e8dd9ef7c78cce1685653b8ec35fd592a4222c6b27b59335add0e626e/cpgtools-1.10.0.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.10.0 2026-08-14T03:04:23,573 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/8d/b2/83bfc18bf5e5530d3a31ae9323dd9445dbac641a3ac635ac171dfb7c4935/cpgtools-1.11.0-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,574 Found link https://files.pythonhosted.org/packages/64/aa/0ce3b7b2b17cfdb5d482e43122fa8800d702ce4493d9bdcf13d894e2c2b9/cpgtools-1.11.0.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.11.0 2026-08-14T03:04:23,575 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/bc/b2/c7dfc8654582db6b3ecc8be46b16718226c597a2afee5c0d9e7a70653da3/cpgtools-1.12.0-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,576 Found link https://files.pythonhosted.org/packages/32/13/c600a0d8edccf56c0f2d5d7ba2246ea7d5feaae4e8c7e0ba9caf757d9656/cpgtools-1.12.0.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 1.12.0 2026-08-14T03:04:23,577 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/ff/b4/4b9b67e2c0793eb881645c5d4aa0a4e5cb699e7790ef684c57f84591e718/cpgtools-2.0.0-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,577 Found link https://files.pythonhosted.org/packages/98/58/587ea0bde4f3dcbff743977eb4e16ab675f11be3651cc40ad9c590eb220a/cpgtools-2.0.0.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 2.0.0 2026-08-14T03:04:23,578 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/7c/4c/3162ea67bc6380a681963db2a48fca4a3988dd04b6e5824613b3e6c6af07/cpgtools-2.0.2-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,579 Found link https://files.pythonhosted.org/packages/0f/06/92f8c84accf73fa202ad5cd95a1190c4b000948dd911470d45eb847889ce/cpgtools-2.0.2.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 2.0.2 2026-08-14T03:04:23,579 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/26/41/37045f8d220c6c1eae4d007906e856a4f8966ac937ca6b16763cf1855aee/cpgtools-2.0.3-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,580 Found link https://files.pythonhosted.org/packages/77/19/01a570aa48c01e98f213034fc48cfd7bc486b6b171ba18b5e9f6947c4518/cpgtools-2.0.3.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 2.0.3 2026-08-14T03:04:23,581 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/73/4c/f85b1522651ba7f63fe5f107e2460dce5c87faa40f01f0668961d3ae113b/cpgtools-2.0.4-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,581 Found link https://files.pythonhosted.org/packages/c4/d3/99ac37b272de90b1e97e1fd1a7084c995a89a0a425c374f0fc429328309b/cpgtools-2.0.4.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 2.0.4 2026-08-14T03:04:23,582 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/99/e9/892915631247b19cb5335b24fb38727d82e1a7c46f86b079903dc41e915a/cpgtools-2.0.5-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,583 Found link https://files.pythonhosted.org/packages/c8/6d/a59eac1cffcfaed4df4515d8f8b10bc182821ee5ff2f6242d042363c4239/cpgtools-2.0.5.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.5), version: 2.0.5 2026-08-14T03:04:23,584 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/b7/fa/f8eb371bd1ce9bae030a05338671ae6661ca5944db4cafa9325905422fff/cpgtools-3.0.0-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.9) 2026-08-14T03:04:23,585 Found link https://files.pythonhosted.org/packages/e9/9a/c767255706a5fe70945976ede3291a01da9a1763774e558a3c67093b2f85/cpgtools-3.0.0.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.9), version: 3.0.0 2026-08-14T03:04:23,585 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/0d/28/7f67038b47a0453695b4c60552c9d557a1143fb68a27b6ef7f67b2e96f77/cpgtools-3.0.1-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.9) 2026-08-14T03:04:23,586 Found link https://files.pythonhosted.org/packages/bd/6f/7cad6589c14dffe6c0929e4f6c0784a01c6d5fb258408a6fe60a67621cc7/cpgtools-3.0.1.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.9), version: 3.0.1 2026-08-14T03:04:23,587 Skipping link: No binaries permitted for cpgtools: https://files.pythonhosted.org/packages/fe/80/5531473b9e26360feda025e19db1cf2b6684d700a5e094cfb0ff0a7aa955/cpgtools-3.0.2-py3-none-any.whl (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.9) 2026-08-14T03:04:23,588 Found link https://files.pythonhosted.org/packages/47/13/47148c6caa8602cd59ff058844e4aa4c5cf712fe00fc77ef7a055cc3eead/cpgtools-3.0.2.tar.gz (from https://pypi.org/simple/cpgtools/) (requires-python:>=3.9), version: 3.0.2 2026-08-14T03:04:23,589 Fetching project page and analyzing links: https://www.piwheels.org/simple/cpgtools/ 2026-08-14T03:04:23,589 Getting page https://www.piwheels.org/simple/cpgtools/ 2026-08-14T03:04:23,591 Found index url https://www.piwheels.org/simple 2026-08-14T03:04:23,828 Fetched page https://www.piwheels.org/simple/cpgtools/ as text/html 2026-08-14T03:04:23,837 Skipping link: No binaries permitted for cpgtools: https://www.piwheels.org/simple/cpgtools/cpgtools-3.0.1-py3-none-any.whl#sha256=478a8424379e6a4c43c43dc9ed3e809425be044d7769d32aa12f4a80dfba35e0 (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.9) 2026-08-14T03:04:23,838 Skipping link: No binaries permitted for cpgtools: https://www.piwheels.org/simple/cpgtools/cpgtools-3.0.0-py3-none-any.whl#sha256=91edc60f38a12dcb4a21c5404cc1d9a8b245585bb91dfe4dfa104494e06c700a (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.9) 2026-08-14T03:04:23,838 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-2.0.5-py3-none-any.whl#sha256=356365ccd28df60cdc25de4515258e0c33d84a592c8fd10b25ea39f2031aacae (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,839 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-2.0.4-py3-none-any.whl#sha256=313f194f76daa0d20310055d6e10e664b885df855041c70913ee94feda814bd5 (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,839 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-2.0.3-py3-none-any.whl#sha256=e131795bf0806ecd6edeb480936f2d534921046f2087bbd81b0bc5f35f3306a9 (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,840 Skipping link: No binaries permitted for cpgtools: 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https://archive1.piwheels.org/simple/cpgtools/cpgtools-1.11.0-py3-none-any.whl#sha256=5fe291d3e889a5591636f9ce9935067240c242249c99c523396e97c79fe3228f (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,842 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-1.10.0-py3-none-any.whl#sha256=b92e30faf3aec9600f389797f2a17f25b26c2285d86a06f6aa73e5c2b48ce19c (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,843 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-1.0.9-py3-none-any.whl#sha256=243c522a0bfb590697474aeb04740e8edd970ecdb2a274fc9575a144d53ae9cc (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,843 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-1.0.8-py3-none-any.whl#sha256=3074611a327d4b648f5cbaee1b170fb9a4f85afc8842bab9c9a1c87a9792a35a (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,844 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-1.0.7-py3-none-any.whl#sha256=40b2fa7f34ed256964063a7bab57baf3ed7c14ee9dfb9554e4ae0a3e73a30aac (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,845 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-1.0.6-py3-none-any.whl#sha256=2d1d903b0411ea0705319cf569ae116de2d44f5d914993d7517dddd617511430 (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,845 Skipping link: No binaries permitted for cpgtools: 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https://archive1.piwheels.org/simple/cpgtools/cpgtools-1.0.2-py3-none-any.whl#sha256=841f852527e156e551a57551a42a3ae78784893b4e4cda0499f37472917f1c21 (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,847 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-1.0.1-py3-none-any.whl#sha256=1290e550ff7d441fd10c748ca9e93686b53a44bcd9b34bca8bd8a87465bae5de (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,848 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-1.0.0-py3-none-any.whl#sha256=eff596d5a73aec71b4192b52ed030d0f8a16fb12f86b8032b7f848986cef7f2e (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,848 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-0.1.8-py3-none-any.whl#sha256=873b69d00be2f568a80db4540a761bd40e84640a59127bb7f58b23f52e4cd5fc (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,849 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-0.1.7-py3-none-any.whl#sha256=0c881765988d95defd2d70c73e4dd1b5c83a5112a522336eff938c12b8b47627 (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,849 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-0.1.6-py3-none-any.whl#sha256=141737d4b06f88c02a008fdc56dcea5104689691def4e6e993f173f2bb34d886 (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,850 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-0.1.5-py3-none-any.whl#sha256=6fccdb17cf56622384e2873f524b5eae437190257b8d9232eab1e4a9c4f38f82 (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,850 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-0.1.4-py3-none-any.whl#sha256=c19c894f17325ccf96ae0a23d09b028d0c11a7d834685073de086b83b74622cb (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,851 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-0.1.3-py3-none-any.whl#sha256=dcbceaa2ee73746e4e46159ab8ef83331327aa4b654adad6575f45c510df07ae (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,852 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-0.1.2-py3-none-any.whl#sha256=5d55577312e66295fd04fe23958c50670ba68455d948dfa04ca5a921001d4078 (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,852 Skipping link: No binaries permitted for cpgtools: https://archive1.piwheels.org/simple/cpgtools/cpgtools-0.1.1-py3-none-any.whl#sha256=63fb5d114a96f442607f03f8e5d9f8f17b1495f32b0172dd7379ccafd90e2697 (from https://www.piwheels.org/simple/cpgtools/) (requires-python:>=3.5) 2026-08-14T03:04:23,853 Skipping link: not a file: https://www.piwheels.org/simple/cpgtools/ 2026-08-14T03:04:23,853 Skipping link: not a file: https://pypi.org/simple/cpgtools/ 2026-08-14T03:04:23,877 Given no hashes to check 1 links for project 'cpgtools': discarding no candidates 2026-08-14T03:04:23,896 Collecting cpgtools==3.0.2 2026-08-14T03:04:23,899 Created temporary directory: /tmp/pip-unpack-1vp7mbk1 2026-08-14T03:04:24,127 Downloading cpgtools-3.0.2.tar.gz (45.1 MB) 2026-08-14T03:04:33,639 Added cpgtools==3.0.2 from https://files.pythonhosted.org/packages/47/13/47148c6caa8602cd59ff058844e4aa4c5cf712fe00fc77ef7a055cc3eead/cpgtools-3.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-d8n3js21' 2026-08-14T03:04:33,648 Created temporary directory: /tmp/pip-build-env-5g98pdkl 2026-08-14T03:04:33,653 Installing build dependencies: started 2026-08-14T03:04:33,655 Running command pip subprocess to install build dependencies 2026-08-14T03:04:34,787 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-08-14T03:04:35,660 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-14T03:04:35,682 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-14T03:04:37,457 Collecting setuptools>=77.0.3 2026-08-14T03:04:37,458 Obtaining dependency information for setuptools>=77.0.3 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-08-14T03:04:37,473 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-08-14T03:04:37,710 Collecting wheel 2026-08-14T03:04:37,711 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-08-14T03:04:37,726 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-08-14T03:04:37,912 Collecting packaging>=24.0 2026-08-14T03:04:37,913 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-08-14T03:04:37,926 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-08-14T03:04:38,119 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-08-14T03:04:38,143 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-08-14T03:04:38,215 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-14T03:04:38,251 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-08-14T03:04:38,279 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-08-14T03:04:38,353 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-14T03:04:41,170 Installing collected packages: setuptools, packaging, wheel 2026-08-14T03:04:43,904 Creating /tmp/pip-build-env-5g98pdkl/overlay/local/bin 2026-08-14T03:04:43,906 changing mode of /tmp/pip-build-env-5g98pdkl/overlay/local/bin/wheel to 755 2026-08-14T03:04:43,927 Successfully installed packaging-26.3 setuptools-84.0.0 wheel-0.48.0 2026-08-14T03:04:44,210 Installing build dependencies: finished with status 'done' 2026-08-14T03:04:44,216 Getting requirements to build wheel: started 2026-08-14T03:04:44,217 Running command Getting requirements to build wheel 2026-08-14T03:04:44,906 running egg_info 2026-08-14T03:04:44,912 writing src/cpgtools.egg-info/PKG-INFO 2026-08-14T03:04:44,916 writing dependency_links to src/cpgtools.egg-info/dependency_links.txt 2026-08-14T03:04:44,919 writing entry points to src/cpgtools.egg-info/entry_points.txt 2026-08-14T03:04:44,921 writing requirements to src/cpgtools.egg-info/requires.txt 2026-08-14T03:04:44,923 writing top-level names to src/cpgtools.egg-info/top_level.txt 2026-08-14T03:04:44,973 reading manifest file 'src/cpgtools.egg-info/SOURCES.txt' 2026-08-14T03:04:45,059 reading manifest template 'MANIFEST.in' 2026-08-14T03:04:45,104 warning: no files found matching '*.pyx' under directory 'src' 2026-08-14T03:04:45,330 adding license file 'LICENSE.txt' 2026-08-14T03:04:45,355 writing manifest file 'src/cpgtools.egg-info/SOURCES.txt' 2026-08-14T03:04:45,455 Getting requirements to build wheel: finished with status 'done' 2026-08-14T03:04:45,458 Created temporary directory: /tmp/pip-modern-metadata-lkzhbrbb 2026-08-14T03:04:45,460 Preparing metadata (pyproject.toml): started 2026-08-14T03:04:45,462 Running command Preparing metadata (pyproject.toml) 2026-08-14T03:04:46,135 running dist_info 2026-08-14T03:04:46,145 creating /tmp/pip-modern-metadata-lkzhbrbb/cpgtools.egg-info 2026-08-14T03:04:46,146 writing /tmp/pip-modern-metadata-lkzhbrbb/cpgtools.egg-info/PKG-INFO 2026-08-14T03:04:46,149 writing dependency_links to /tmp/pip-modern-metadata-lkzhbrbb/cpgtools.egg-info/dependency_links.txt 2026-08-14T03:04:46,152 writing entry points to /tmp/pip-modern-metadata-lkzhbrbb/cpgtools.egg-info/entry_points.txt 2026-08-14T03:04:46,153 writing requirements to /tmp/pip-modern-metadata-lkzhbrbb/cpgtools.egg-info/requires.txt 2026-08-14T03:04:46,154 writing top-level names to /tmp/pip-modern-metadata-lkzhbrbb/cpgtools.egg-info/top_level.txt 2026-08-14T03:04:46,156 writing manifest file '/tmp/pip-modern-metadata-lkzhbrbb/cpgtools.egg-info/SOURCES.txt' 2026-08-14T03:04:46,192 reading manifest file '/tmp/pip-modern-metadata-lkzhbrbb/cpgtools.egg-info/SOURCES.txt' 2026-08-14T03:04:46,194 reading manifest template 'MANIFEST.in' 2026-08-14T03:04:46,240 warning: no files found matching '*.pyx' under directory 'src' 2026-08-14T03:04:46,467 adding license file 'LICENSE.txt' 2026-08-14T03:04:46,486 writing manifest file '/tmp/pip-modern-metadata-lkzhbrbb/cpgtools.egg-info/SOURCES.txt' 2026-08-14T03:04:46,488 creating '/tmp/pip-modern-metadata-lkzhbrbb/cpgtools-3.0.2.dist-info' 2026-08-14T03:04:46,613 Preparing metadata (pyproject.toml): finished with status 'done' 2026-08-14T03:04:46,618 Source in /tmp/pip-wheel-95c_33b3/cpgtools_9f8a66205f0043e491a4d5bf0c47527a has version 3.0.2, which satisfies requirement cpgtools==3.0.2 from https://files.pythonhosted.org/packages/47/13/47148c6caa8602cd59ff058844e4aa4c5cf712fe00fc77ef7a055cc3eead/cpgtools-3.0.2.tar.gz 2026-08-14T03:04:46,619 Removed cpgtools==3.0.2 from https://files.pythonhosted.org/packages/47/13/47148c6caa8602cd59ff058844e4aa4c5cf712fe00fc77ef7a055cc3eead/cpgtools-3.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-d8n3js21' 2026-08-14T03:04:46,625 Created temporary directory: /tmp/pip-unpack-vnu5upux 2026-08-14T03:04:46,625 Building wheels for collected packages: cpgtools 2026-08-14T03:04:46,630 Created temporary directory: /tmp/pip-wheel-937oofi4 2026-08-14T03:04:46,630 Destination directory: /tmp/pip-wheel-937oofi4 2026-08-14T03:04:46,633 Building wheel for cpgtools (pyproject.toml): started 2026-08-14T03:04:46,637 Running command Building wheel for cpgtools (pyproject.toml) 2026-08-14T03:04:47,259 running bdist_wheel 2026-08-14T03:04:47,276 running build 2026-08-14T03:04:47,277 running build_py 2026-08-14T03:04:47,283 creating build/lib/dmc 2026-08-14T03:04:47,285 copying src/dmc/DunedinPACE.py -> build/lib/dmc 2026-08-14T03:04:47,287 copying src/dmc/__init__.py -> build/lib/dmc 2026-08-14T03:04:47,288 copying src/dmc/_version.py -> build/lib/dmc 2026-08-14T03:04:47,290 copying src/dmc/ireader.py -> build/lib/dmc 2026-08-14T03:04:47,292 copying src/dmc/tf_mse.py -> build/lib/dmc 2026-08-14T03:04:47,294 copying src/dmc/cgID.py -> build/lib/dmc 2026-08-14T03:04:47,522 copying src/dmc/helpdoc.py -> build/lib/dmc 2026-08-14T03:04:47,524 copying src/dmc/methylclocks.py -> build/lib/dmc 2026-08-14T03:04:47,527 copying src/dmc/clock_info.py -> build/lib/dmc 2026-08-14T03:04:47,529 copying src/dmc/imputation.py -> build/lib/dmc 2026-08-14T03:04:47,531 copying src/dmc/methyldat.py -> build/lib/dmc 2026-08-14T03:04:47,533 copying src/dmc/utils.py -> build/lib/dmc 2026-08-14T03:04:47,536 creating build/lib/cpgmodule 2026-08-14T03:04:47,537 copying src/cpgmodule/__init__.py -> build/lib/cpgmodule 2026-08-14T03:04:47,538 copying src/cpgmodule/_version.py -> build/lib/cpgmodule 2026-08-14T03:04:47,540 copying src/cpgmodule/ireader.py -> build/lib/cpgmodule 2026-08-14T03:04:47,541 copying src/cpgmodule/BED.py -> build/lib/cpgmodule 2026-08-14T03:04:47,544 copying src/cpgmodule/cgID.py -> build/lib/cpgmodule 2026-08-14T03:04:47,769 copying src/cpgmodule/imotif.py -> build/lib/cpgmodule 2026-08-14T03:04:47,772 copying src/cpgmodule/MI.py -> build/lib/cpgmodule 2026-08-14T03:04:47,774 copying src/cpgmodule/region2gene.py -> build/lib/cpgmodule 2026-08-14T03:04:47,777 copying src/cpgmodule/methylClock.py -> build/lib/cpgmodule 2026-08-14T03:04:47,779 copying src/cpgmodule/padjust.py -> build/lib/cpgmodule 2026-08-14T03:04:47,780 copying src/cpgmodule/utils.py -> build/lib/cpgmodule 2026-08-14T03:04:47,783 copying src/cpgmodule/extend_bed.py -> build/lib/cpgmodule 2026-08-14T03:04:47,786 creating build/lib/impute_module 2026-08-14T03:04:47,787 copying src/impute_module/__init__.py -> build/lib/impute_module 2026-08-14T03:04:47,788 copying src/impute_module/common.py -> build/lib/impute_module 2026-08-14T03:04:47,791 copying src/impute_module/blockimpute.py -> build/lib/impute_module 2026-08-14T03:04:47,793 copying src/impute_module/imputelib.py -> build/lib/impute_module 2026-08-14T03:04:47,797 copying src/impute_module/bootstrap.py -> build/lib/impute_module 2026-08-14T03:04:47,800 copying src/impute_module/extref.py -> build/lib/impute_module 2026-08-14T03:04:47,802 copying src/impute_module/solver.py -> build/lib/impute_module 2026-08-14T03:04:47,804 copying src/impute_module/softimpute.py -> build/lib/impute_module 2026-08-14T03:04:47,808 creating build/lib/dmc/data 2026-08-14T03:04:47,809 copying src/dmc/data/__init__.py -> build/lib/dmc/data 2026-08-14T03:04:47,811 creating build/lib/cpgmodule/data 2026-08-14T03:04:47,812 copying src/cpgmodule/data/__init__.py -> build/lib/cpgmodule/data 2026-08-14T03:04:47,815 creating build/lib/cpgmodule/cli 2026-08-14T03:04:47,816 copying src/cpgmodule/cli/dmc_fisher.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,819 copying src/cpgmodule/cli/dmc_glm.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,822 copying src/cpgmodule/cli/epical.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,824 copying src/cpgmodule/cli/dmc_bb.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,826 copying src/cpgmodule/cli/CpG_anno_probe.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,829 copying src/cpgmodule/cli/beta_tSNE.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,831 copying src/cpgmodule/cli/__init__.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,833 copying src/cpgmodule/cli/dmc_logit.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,836 copying src/cpgmodule/cli/CpG_distrb_region.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,838 copying src/cpgmodule/cli/CpG_distrb_chrom.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,841 copying src/cpgmodule/cli/beta_PCA.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,843 copying src/cpgmodule/cli/beta_combat.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,845 copying src/cpgmodule/cli/beta_stats.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,847 copying src/cpgmodule/cli/dmc_ttest.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,850 copying src/cpgmodule/cli/dmc_nonparametric.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,852 copying src/cpgmodule/cli/beta_trichotmize.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,854 copying src/cpgmodule/cli/predict_sex.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,857 copying src/cpgmodule/cli/beta_profile_region.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,859 copying src/cpgmodule/cli/beta_UMAP.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,862 copying src/cpgmodule/cli/beta_profile_gene_centered.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,864 copying src/cpgmodule/cli/CpG_density_gene_centered.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,866 copying src/cpgmodule/cli/beta_selectNBest.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,869 copying src/cpgmodule/cli/beta_deconvolution.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,872 copying src/cpgmodule/cli/beta_jitter_plot.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,874 copying src/cpgmodule/cli/CpG_anno_position.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,876 copying src/cpgmodule/cli/dmc_Bayes.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,879 copying src/cpgmodule/cli/beta_impute.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,882 copying src/cpgmodule/cli/CpG_aggregation.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,884 copying src/cpgmodule/cli/CpG_to_gene.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,886 copying src/cpgmodule/cli/beta_topN.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,889 copying src/cpgmodule/cli/CpG_logo.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,891 copying src/cpgmodule/cli/beta_stacked_barplot.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,894 copying src/cpgmodule/cli/beta_m_conversion.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,896 copying src/cpgmodule/cli/CpG_distrb_gene_centered.py -> build/lib/cpgmodule/cli 2026-08-14T03:04:47,898 running egg_info 2026-08-14T03:04:47,908 writing src/cpgtools.egg-info/PKG-INFO 2026-08-14T03:04:47,910 writing dependency_links to src/cpgtools.egg-info/dependency_links.txt 2026-08-14T03:04:47,913 writing entry points to src/cpgtools.egg-info/entry_points.txt 2026-08-14T03:04:47,915 writing requirements to src/cpgtools.egg-info/requires.txt 2026-08-14T03:04:47,916 writing top-level names to src/cpgtools.egg-info/top_level.txt 2026-08-14T03:04:47,939 reading manifest file 'src/cpgtools.egg-info/SOURCES.txt' 2026-08-14T03:04:47,965 reading manifest template 'MANIFEST.in' 2026-08-14T03:04:48,009 warning: no files found matching '*.pyx' under directory 'src' 2026-08-14T03:04:48,226 adding license file 'LICENSE.txt' 2026-08-14T03:04:48,250 writing manifest file 'src/cpgtools.egg-info/SOURCES.txt' 2026-08-14T03:04:48,266 /tmp/pip-build-env-5g98pdkl/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'dmc.data.__pycache__' is absent from the `packages` configuration. 2026-08-14T03:04:48,267 !! 2026-08-14T03:04:48,268 ******************************************************************************** 2026-08-14T03:04:48,268 ############################ 2026-08-14T03:04:48,269 # Package would be ignored # 2026-08-14T03:04:48,269 ############################ 2026-08-14T03:04:48,270 Python recognizes 'dmc.data.__pycache__' as an importable package[^1], 2026-08-14T03:04:48,270 but it is absent from setuptools' `packages` configuration. 2026-08-14T03:04:48,271 This leads to an ambiguous overall configuration. If you want to distribute this 2026-08-14T03:04:48,271 package, please make sure that 'dmc.data.__pycache__' is explicitly added 2026-08-14T03:04:48,272 to the `packages` configuration field. 2026-08-14T03:04:48,272 Alternatively, you can also rely on setuptools' discovery methods 2026-08-14T03:04:48,273 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-08-14T03:04:48,273 instead of `find_packages(...)`/`find:`). 2026-08-14T03:04:48,274 You can read more about "package discovery" on setuptools documentation page: 2026-08-14T03:04:48,275 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-08-14T03:04:48,276 If you don't want 'dmc.data.__pycache__' to be distributed and are 2026-08-14T03:04:48,277 already explicitly excluding 'dmc.data.__pycache__' via 2026-08-14T03:04:48,277 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-08-14T03:04:48,277 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-08-14T03:04:48,278 combination with a more fine grained `package-data` configuration. 2026-08-14T03:04:48,279 You can read more about "package data files" on setuptools documentation page: 2026-08-14T03:04:48,280 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-08-14T03:04:48,282 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-08-14T03:04:48,282 even if it does not contain any `.py` files. 2026-08-14T03:04:48,283 On the other hand, currently there is no concept of package data 2026-08-14T03:04:48,283 directory, all directories are treated like packages. 2026-08-14T03:04:48,283 ******************************************************************************** 2026-08-14T03:04:48,284 !! 2026-08-14T03:04:48,285 check.warn(importable) 2026-08-14T03:04:48,286 copying src/dmc/data/ENCen100.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,286 copying src/dmc/data/mammClock1.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,287 copying src/dmc/data/Horvath18.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,290 copying src/dmc/data/Hannum.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,292 copying src/dmc/data/GA_Lee_RPC.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,294 copying src/dmc/data/YOMT_mm39.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,297 copying src/dmc/data/WLMT_mm39.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,300 copying src/dmc/data/Lu_DNAmTL.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,302 copying src/dmc/data/AltumAge.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,308 copying src/dmc/data/mmBlood_mm39.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,311 copying src/dmc/data/multi_platform_cpgs.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,317 copying src/dmc/data/Zhang_EN.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,320 copying src/dmc/data/scaler.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,327 copying src/dmc/data/GA_Lee_CPC.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,331 copying src/dmc/data/GA_Haftorn.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,334 copying src/dmc/data/GA_Lee_rRPC.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,337 copying src/dmc/data/GA_Knight.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,340 copying src/dmc/data/DunedinPACE.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,342 copying src/dmc/data/AltumAge.h5 -> build/lib/dmc/data 2026-08-14T03:04:48,485 copying src/dmc/data/Zhang_BLUP.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,631 copying src/dmc/data/PedBE.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,633 copying src/dmc/data/WLMT_mm10.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,635 copying src/dmc/data/GA_Bohlin.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,637 copying src/dmc/data/Horvath13.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,640 copying src/dmc/data/Lin.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,642 copying src/dmc/data/mammClock3.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,645 copying src/dmc/data/GA_Mayne.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,648 copying src/dmc/data/ENCen40.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,651 copying src/dmc/data/MEAT.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,654 copying src/dmc/data/Horvath13_shrunk.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,657 copying src/dmc/data/YOMT_mm10.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,660 copying src/dmc/data/Ped_Wu.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,662 copying src/dmc/data/mmLiver_mm10.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,665 copying src/dmc/data/Levine.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,668 copying src/dmc/data/Cortical.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,671 copying src/dmc/data/mmBlood_mm10.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,674 copying src/dmc/data/mmLiver_mm39.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,677 copying src/dmc/data/mammClock2.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,681 copying src/dmc/data/Weidner.pkl -> build/lib/dmc/data 2026-08-14T03:04:48,683 creating build/lib/dmc/data/__pycache__ 2026-08-14T03:04:48,684 copying src/dmc/data/__pycache__/__init__.cpython-313.pyc -> build/lib/dmc/data/__pycache__ 2026-08-14T03:04:48,687 creating build/lib/cpgmodule/deconv_data 2026-08-14T03:04:48,688 copying src/cpgmodule/deconv_data/Reference_CellTrace.beta.tsv -> build/lib/cpgmodule/deconv_data 2026-08-14T03:04:48,695 copying src/cpgmodule/deconv_data/Reference_EpiDISH.beta.tsv -> build/lib/cpgmodule/deconv_data 2026-08-14T03:04:48,720 copying src/cpgmodule/data/AltumAge_cpg.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,730 copying src/cpgmodule/data/AltumAge_multi_platform_cpgs.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,739 copying src/cpgmodule/data/AltumAge_scaler.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,751 copying src/cpgmodule/data/GA_Bohlin.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,753 copying src/cpgmodule/data/GA_Haftorn.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,756 copying src/cpgmodule/data/GA_Knight.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,759 copying src/cpgmodule/data/GA_Lee_CPC.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,762 copying src/cpgmodule/data/GA_Lee_RPC.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,766 copying src/cpgmodule/data/GA_Lee_refined_RPC.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,769 copying src/cpgmodule/data/GA_Mayne.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,772 copying src/cpgmodule/data/Hannum.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,774 copying src/cpgmodule/data/Horvath_2013.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,777 copying src/cpgmodule/data/Horvath_2018.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,780 copying src/cpgmodule/data/Levine.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,783 copying src/cpgmodule/data/Lu_DNAmTL.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,786 copying src/cpgmodule/data/Ped_McEwen.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,788 copying src/cpgmodule/data/Ped_Wu.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,791 copying src/cpgmodule/data/Zhang_BLUP.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,934 copying src/cpgmodule/data/Zhang_EN.pkl -> build/lib/cpgmodule/data 2026-08-14T03:04:48,944 running build_scripts 2026-08-14T03:04:48,945 creating build/scripts-3.11 2026-08-14T03:04:48,946 copying and adjusting scripts/CpG_aggregation.py -> build/scripts-3.11 2026-08-14T03:04:48,949 copying and adjusting scripts/CpG_anno_position.py -> build/scripts-3.11 2026-08-14T03:04:48,951 copying and adjusting scripts/CpG_anno_probe.py -> build/scripts-3.11 2026-08-14T03:04:48,954 copying and adjusting scripts/CpG_density_gene_centered.py -> build/scripts-3.11 2026-08-14T03:04:48,956 copying and adjusting scripts/CpG_distrb_chrom.py -> build/scripts-3.11 2026-08-14T03:04:48,957 copying and adjusting scripts/CpG_distrb_gene_centered.py -> build/scripts-3.11 2026-08-14T03:04:48,959 copying and adjusting scripts/CpG_distrb_region.py -> build/scripts-3.11 2026-08-14T03:04:48,961 copying and adjusting scripts/CpG_logo.py -> build/scripts-3.11 2026-08-14T03:04:48,963 copying and adjusting scripts/CpG_to_gene.py -> build/scripts-3.11 2026-08-14T03:04:48,965 copying and adjusting scripts/beta_impute.py -> build/scripts-3.11 2026-08-14T03:04:48,967 copying and adjusting scripts/beta_deconvolution.py -> build/scripts-3.11 2026-08-14T03:04:48,968 copying and adjusting scripts/beta_PCA.py -> build/scripts-3.11 2026-08-14T03:04:48,970 copying and adjusting scripts/beta_UMAP.py -> build/scripts-3.11 2026-08-14T03:04:48,972 copying and adjusting scripts/beta_jitter_plot.py -> build/scripts-3.11 2026-08-14T03:04:48,974 copying and adjusting scripts/beta_m_conversion.py -> build/scripts-3.11 2026-08-14T03:04:48,976 copying and adjusting scripts/beta_profile_gene_centered.py -> build/scripts-3.11 2026-08-14T03:04:48,978 copying and adjusting scripts/beta_profile_region.py -> build/scripts-3.11 2026-08-14T03:04:48,979 copying and adjusting scripts/beta_selectNBest.py -> build/scripts-3.11 2026-08-14T03:04:48,981 copying and adjusting scripts/beta_stacked_barplot.py -> build/scripts-3.11 2026-08-14T03:04:48,983 copying and adjusting scripts/beta_stats.py -> build/scripts-3.11 2026-08-14T03:04:48,985 copying and adjusting scripts/beta_tSNE.py -> build/scripts-3.11 2026-08-14T03:04:48,987 copying and adjusting scripts/beta_topN.py -> build/scripts-3.11 2026-08-14T03:04:48,989 copying and adjusting scripts/beta_trichotmize.py -> build/scripts-3.11 2026-08-14T03:04:48,991 copying and adjusting scripts/beta_combat.py -> build/scripts-3.11 2026-08-14T03:04:48,992 copying and adjusting scripts/dmc_Bayes.py -> build/scripts-3.11 2026-08-14T03:04:48,994 copying and adjusting scripts/dmc_bb.py -> build/scripts-3.11 2026-08-14T03:04:48,996 copying and adjusting scripts/dmc_fisher.py -> build/scripts-3.11 2026-08-14T03:04:48,998 copying and adjusting scripts/dmc_glm.py -> build/scripts-3.11 2026-08-14T03:04:49,000 copying and adjusting scripts/dmc_logit.py -> build/scripts-3.11 2026-08-14T03:04:49,002 copying and adjusting scripts/dmc_nonparametric.py -> build/scripts-3.11 2026-08-14T03:04:49,004 copying and adjusting scripts/dmc_ttest.py -> build/scripts-3.11 2026-08-14T03:04:49,006 copying and adjusting scripts/predict_sex.py -> build/scripts-3.11 2026-08-14T03:04:49,007 changing mode of build/scripts-3.11/CpG_aggregation.py from 644 to 755 2026-08-14T03:04:49,008 changing mode of build/scripts-3.11/CpG_anno_position.py from 644 to 755 2026-08-14T03:04:49,008 changing mode of build/scripts-3.11/CpG_anno_probe.py from 644 to 755 2026-08-14T03:04:49,009 changing mode of build/scripts-3.11/CpG_density_gene_centered.py from 644 to 755 2026-08-14T03:04:49,009 changing mode of build/scripts-3.11/CpG_distrb_chrom.py from 644 to 755 2026-08-14T03:04:49,010 changing mode of build/scripts-3.11/CpG_distrb_gene_centered.py from 644 to 755 2026-08-14T03:04:49,010 changing mode of build/scripts-3.11/CpG_distrb_region.py from 644 to 755 2026-08-14T03:04:49,011 changing mode of build/scripts-3.11/CpG_logo.py from 644 to 755 2026-08-14T03:04:49,012 changing mode of build/scripts-3.11/CpG_to_gene.py from 644 to 755 2026-08-14T03:04:49,012 changing mode of build/scripts-3.11/beta_impute.py from 644 to 755 2026-08-14T03:04:49,013 changing mode of build/scripts-3.11/beta_deconvolution.py from 644 to 755 2026-08-14T03:04:49,014 changing mode of build/scripts-3.11/beta_PCA.py from 644 to 755 2026-08-14T03:04:49,014 changing mode of build/scripts-3.11/beta_UMAP.py from 644 to 755 2026-08-14T03:04:49,015 changing mode of build/scripts-3.11/beta_jitter_plot.py from 644 to 755 2026-08-14T03:04:49,015 changing mode of build/scripts-3.11/beta_m_conversion.py from 644 to 755 2026-08-14T03:04:49,016 changing mode of build/scripts-3.11/beta_profile_gene_centered.py from 644 to 755 2026-08-14T03:04:49,016 changing mode of build/scripts-3.11/beta_profile_region.py from 644 to 755 2026-08-14T03:04:49,017 changing mode of build/scripts-3.11/beta_selectNBest.py from 644 to 755 2026-08-14T03:04:49,017 changing mode of build/scripts-3.11/beta_stacked_barplot.py from 644 to 755 2026-08-14T03:04:49,018 changing mode of build/scripts-3.11/beta_stats.py from 644 to 755 2026-08-14T03:04:49,018 changing mode of build/scripts-3.11/beta_tSNE.py from 644 to 755 2026-08-14T03:04:49,019 changing mode of build/scripts-3.11/beta_topN.py from 644 to 755 2026-08-14T03:04:49,020 changing mode of build/scripts-3.11/beta_trichotmize.py from 644 to 755 2026-08-14T03:04:49,020 changing mode of build/scripts-3.11/beta_combat.py from 644 to 755 2026-08-14T03:04:49,021 changing mode of build/scripts-3.11/dmc_Bayes.py from 644 to 755 2026-08-14T03:04:49,021 changing mode of build/scripts-3.11/dmc_bb.py from 644 to 755 2026-08-14T03:04:49,022 changing mode of build/scripts-3.11/dmc_fisher.py from 644 to 755 2026-08-14T03:04:49,022 changing mode of build/scripts-3.11/dmc_glm.py from 644 to 755 2026-08-14T03:04:49,023 changing mode of build/scripts-3.11/dmc_logit.py from 644 to 755 2026-08-14T03:04:49,023 changing mode of build/scripts-3.11/dmc_nonparametric.py from 644 to 755 2026-08-14T03:04:49,024 changing mode of build/scripts-3.11/dmc_ttest.py from 644 to 755 2026-08-14T03:04:49,025 changing mode of build/scripts-3.11/predict_sex.py from 644 to 755 2026-08-14T03:04:49,031 installing to build/bdist.linux-armv7l/wheel 2026-08-14T03:04:49,031 running install 2026-08-14T03:04:49,054 running install_lib 2026-08-14T03:04:49,060 creating build/bdist.linux-armv7l/wheel 2026-08-14T03:04:49,062 creating build/bdist.linux-armv7l/wheel/dmc 2026-08-14T03:04:49,063 copying build/lib/dmc/DunedinPACE.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,065 copying build/lib/dmc/__init__.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,067 copying build/lib/dmc/_version.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,069 copying build/lib/dmc/ireader.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,070 copying build/lib/dmc/tf_mse.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,072 copying build/lib/dmc/cgID.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,314 copying build/lib/dmc/helpdoc.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,317 creating build/bdist.linux-armv7l/wheel/dmc/data 2026-08-14T03:04:49,318 copying build/lib/dmc/data/ENCen100.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,321 copying build/lib/dmc/data/__init__.py -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,323 copying build/lib/dmc/data/mammClock1.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,325 copying build/lib/dmc/data/Horvath18.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,328 creating build/bdist.linux-armv7l/wheel/dmc/data/__pycache__ 2026-08-14T03:04:49,329 copying build/lib/dmc/data/__pycache__/__init__.cpython-313.pyc -> build/bdist.linux-armv7l/wheel/./dmc/data/__pycache__ 2026-08-14T03:04:49,332 copying build/lib/dmc/data/Hannum.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,334 copying build/lib/dmc/data/GA_Lee_RPC.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,337 copying build/lib/dmc/data/YOMT_mm39.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,339 copying build/lib/dmc/data/WLMT_mm39.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,342 copying build/lib/dmc/data/Lu_DNAmTL.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,344 copying build/lib/dmc/data/AltumAge.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,351 copying build/lib/dmc/data/mmBlood_mm39.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,353 copying build/lib/dmc/data/multi_platform_cpgs.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,360 copying build/lib/dmc/data/Zhang_EN.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,362 copying build/lib/dmc/data/scaler.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,370 copying build/lib/dmc/data/GA_Lee_CPC.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,372 copying build/lib/dmc/data/GA_Haftorn.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,374 copying build/lib/dmc/data/GA_Lee_rRPC.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,377 copying build/lib/dmc/data/GA_Knight.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,379 copying build/lib/dmc/data/DunedinPACE.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,381 copying build/lib/dmc/data/AltumAge.h5 -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,545 copying build/lib/dmc/data/Zhang_BLUP.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,670 copying build/lib/dmc/data/PedBE.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,671 copying build/lib/dmc/data/WLMT_mm10.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,674 copying build/lib/dmc/data/GA_Bohlin.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,675 copying build/lib/dmc/data/Horvath13.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,678 copying build/lib/dmc/data/Lin.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,679 copying build/lib/dmc/data/mammClock3.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,682 copying build/lib/dmc/data/GA_Mayne.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,684 copying build/lib/dmc/data/ENCen40.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,686 copying build/lib/dmc/data/MEAT.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,688 copying build/lib/dmc/data/Horvath13_shrunk.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,690 copying build/lib/dmc/data/YOMT_mm10.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,692 copying build/lib/dmc/data/Ped_Wu.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,694 copying build/lib/dmc/data/mmLiver_mm10.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,697 copying build/lib/dmc/data/Levine.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,699 copying build/lib/dmc/data/Cortical.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,702 copying build/lib/dmc/data/mmBlood_mm10.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,704 copying build/lib/dmc/data/mmLiver_mm39.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,706 copying build/lib/dmc/data/mammClock2.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,708 copying build/lib/dmc/data/Weidner.pkl -> build/bdist.linux-armv7l/wheel/./dmc/data 2026-08-14T03:04:49,710 copying build/lib/dmc/methylclocks.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,713 copying build/lib/dmc/clock_info.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,715 copying build/lib/dmc/imputation.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,718 copying build/lib/dmc/methyldat.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,720 copying build/lib/dmc/utils.py -> build/bdist.linux-armv7l/wheel/./dmc 2026-08-14T03:04:49,723 creating build/bdist.linux-armv7l/wheel/cpgmodule 2026-08-14T03:04:49,725 copying build/lib/cpgmodule/__init__.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:49,726 copying build/lib/cpgmodule/_version.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:49,728 copying build/lib/cpgmodule/ireader.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:49,729 copying build/lib/cpgmodule/BED.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:49,732 copying build/lib/cpgmodule/cgID.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:49,964 copying build/lib/cpgmodule/imotif.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:49,966 copying build/lib/cpgmodule/MI.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:49,969 creating build/bdist.linux-armv7l/wheel/cpgmodule/data 2026-08-14T03:04:49,971 copying build/lib/cpgmodule/data/Horvath_2018.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:49,973 copying build/lib/cpgmodule/data/__init__.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:49,975 copying build/lib/cpgmodule/data/Hannum.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:49,977 copying build/lib/cpgmodule/data/GA_Lee_RPC.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:49,980 copying build/lib/cpgmodule/data/Lu_DNAmTL.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:49,982 copying build/lib/cpgmodule/data/GA_Lee_refined_RPC.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:49,985 copying build/lib/cpgmodule/data/Zhang_EN.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:49,987 copying build/lib/cpgmodule/data/AltumAge_scaler.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:49,994 copying build/lib/cpgmodule/data/GA_Lee_CPC.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:49,997 copying build/lib/cpgmodule/data/Horvath_2013.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:50,000 copying build/lib/cpgmodule/data/GA_Haftorn.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:50,002 copying build/lib/cpgmodule/data/GA_Knight.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:50,005 copying build/lib/cpgmodule/data/Zhang_BLUP.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:50,112 copying build/lib/cpgmodule/data/Ped_McEwen.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:50,114 copying build/lib/cpgmodule/data/GA_Bohlin.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:50,116 copying build/lib/cpgmodule/data/GA_Mayne.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:50,118 copying build/lib/cpgmodule/data/Ped_Wu.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:50,120 copying build/lib/cpgmodule/data/AltumAge_multi_platform_cpgs.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:50,126 copying build/lib/cpgmodule/data/Levine.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:50,129 copying build/lib/cpgmodule/data/AltumAge_cpg.pkl -> build/bdist.linux-armv7l/wheel/./cpgmodule/data 2026-08-14T03:04:50,135 copying build/lib/cpgmodule/region2gene.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:50,138 creating build/bdist.linux-armv7l/wheel/cpgmodule/cli 2026-08-14T03:04:50,139 copying build/lib/cpgmodule/cli/dmc_fisher.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,141 copying build/lib/cpgmodule/cli/dmc_glm.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,144 copying build/lib/cpgmodule/cli/epical.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,147 copying build/lib/cpgmodule/cli/dmc_bb.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,150 copying build/lib/cpgmodule/cli/CpG_anno_probe.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,152 copying build/lib/cpgmodule/cli/beta_tSNE.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,155 copying build/lib/cpgmodule/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,156 copying build/lib/cpgmodule/cli/dmc_logit.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,159 copying build/lib/cpgmodule/cli/CpG_distrb_region.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,162 copying build/lib/cpgmodule/cli/CpG_distrb_chrom.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,164 copying build/lib/cpgmodule/cli/beta_PCA.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,167 copying build/lib/cpgmodule/cli/beta_combat.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,169 copying build/lib/cpgmodule/cli/beta_stats.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,172 copying build/lib/cpgmodule/cli/dmc_ttest.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,174 copying build/lib/cpgmodule/cli/dmc_nonparametric.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,177 copying build/lib/cpgmodule/cli/beta_trichotmize.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,180 copying build/lib/cpgmodule/cli/predict_sex.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,182 copying build/lib/cpgmodule/cli/beta_profile_region.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,185 copying build/lib/cpgmodule/cli/beta_UMAP.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,187 copying build/lib/cpgmodule/cli/beta_profile_gene_centered.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,190 copying build/lib/cpgmodule/cli/CpG_density_gene_centered.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,192 copying build/lib/cpgmodule/cli/beta_selectNBest.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,195 copying build/lib/cpgmodule/cli/beta_deconvolution.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,198 copying build/lib/cpgmodule/cli/beta_jitter_plot.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,200 copying build/lib/cpgmodule/cli/CpG_anno_position.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,203 copying build/lib/cpgmodule/cli/dmc_Bayes.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,206 copying build/lib/cpgmodule/cli/beta_impute.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,209 copying build/lib/cpgmodule/cli/CpG_aggregation.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,212 copying build/lib/cpgmodule/cli/CpG_to_gene.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,215 copying build/lib/cpgmodule/cli/beta_topN.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,217 copying build/lib/cpgmodule/cli/CpG_logo.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,220 copying build/lib/cpgmodule/cli/beta_stacked_barplot.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,222 copying build/lib/cpgmodule/cli/beta_m_conversion.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,225 copying build/lib/cpgmodule/cli/CpG_distrb_gene_centered.py -> build/bdist.linux-armv7l/wheel/./cpgmodule/cli 2026-08-14T03:04:50,228 creating build/bdist.linux-armv7l/wheel/cpgmodule/deconv_data 2026-08-14T03:04:50,229 copying build/lib/cpgmodule/deconv_data/Reference_CellTrace.beta.tsv -> build/bdist.linux-armv7l/wheel/./cpgmodule/deconv_data 2026-08-14T03:04:50,235 copying build/lib/cpgmodule/deconv_data/Reference_EpiDISH.beta.tsv -> build/bdist.linux-armv7l/wheel/./cpgmodule/deconv_data 2026-08-14T03:04:50,239 copying build/lib/cpgmodule/methylClock.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:50,241 copying build/lib/cpgmodule/padjust.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:50,243 copying build/lib/cpgmodule/utils.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:50,246 copying build/lib/cpgmodule/extend_bed.py -> build/bdist.linux-armv7l/wheel/./cpgmodule 2026-08-14T03:04:50,249 creating build/bdist.linux-armv7l/wheel/impute_module 2026-08-14T03:04:50,250 copying build/lib/impute_module/__init__.py -> build/bdist.linux-armv7l/wheel/./impute_module 2026-08-14T03:04:50,252 copying build/lib/impute_module/common.py -> build/bdist.linux-armv7l/wheel/./impute_module 2026-08-14T03:04:50,254 copying build/lib/impute_module/blockimpute.py -> build/bdist.linux-armv7l/wheel/./impute_module 2026-08-14T03:04:50,257 copying build/lib/impute_module/imputelib.py -> build/bdist.linux-armv7l/wheel/./impute_module 2026-08-14T03:04:50,261 copying build/lib/impute_module/bootstrap.py -> build/bdist.linux-armv7l/wheel/./impute_module 2026-08-14T03:04:50,264 copying build/lib/impute_module/extref.py -> build/bdist.linux-armv7l/wheel/./impute_module 2026-08-14T03:04:50,268 copying build/lib/impute_module/solver.py -> build/bdist.linux-armv7l/wheel/./impute_module 2026-08-14T03:04:50,271 copying build/lib/impute_module/softimpute.py -> build/bdist.linux-armv7l/wheel/./impute_module 2026-08-14T03:04:50,274 running install_egg_info 2026-08-14T03:04:50,282 Copying src/cpgtools.egg-info to build/bdist.linux-armv7l/wheel/./cpgtools-3.0.2-py3.11.egg-info 2026-08-14T03:04:50,297 running install_scripts 2026-08-14T03:04:50,299 creating build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,302 copying build/scripts-3.11/dmc_fisher.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,305 copying build/scripts-3.11/dmc_glm.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,307 copying build/scripts-3.11/dmc_bb.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,310 copying build/scripts-3.11/CpG_anno_probe.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,313 copying build/scripts-3.11/beta_tSNE.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,316 copying build/scripts-3.11/dmc_logit.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,318 copying build/scripts-3.11/CpG_distrb_region.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,321 copying build/scripts-3.11/CpG_distrb_chrom.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,324 copying build/scripts-3.11/beta_PCA.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,327 copying build/scripts-3.11/beta_combat.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,330 copying build/scripts-3.11/beta_stats.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,332 copying build/scripts-3.11/dmc_ttest.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,335 copying build/scripts-3.11/dmc_nonparametric.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,338 copying build/scripts-3.11/beta_trichotmize.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,341 copying build/scripts-3.11/predict_sex.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,343 copying build/scripts-3.11/beta_profile_region.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,346 copying build/scripts-3.11/beta_UMAP.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,349 copying build/scripts-3.11/beta_profile_gene_centered.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,351 copying build/scripts-3.11/CpG_density_gene_centered.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,354 copying build/scripts-3.11/beta_selectNBest.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,357 copying build/scripts-3.11/beta_deconvolution.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,359 copying build/scripts-3.11/beta_jitter_plot.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,362 copying build/scripts-3.11/CpG_anno_position.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,364 copying build/scripts-3.11/dmc_Bayes.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,366 copying build/scripts-3.11/beta_impute.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,368 copying build/scripts-3.11/CpG_aggregation.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,370 copying build/scripts-3.11/CpG_to_gene.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,373 copying build/scripts-3.11/beta_topN.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,375 copying build/scripts-3.11/CpG_logo.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,377 copying build/scripts-3.11/beta_stacked_barplot.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,379 copying build/scripts-3.11/beta_m_conversion.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,381 copying build/scripts-3.11/CpG_distrb_gene_centered.py -> build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts 2026-08-14T03:04:50,383 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/dmc_fisher.py to 755 2026-08-14T03:04:50,384 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/dmc_glm.py to 755 2026-08-14T03:04:50,385 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/dmc_bb.py to 755 2026-08-14T03:04:50,386 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/CpG_anno_probe.py to 755 2026-08-14T03:04:50,386 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_tSNE.py to 755 2026-08-14T03:04:50,387 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/dmc_logit.py to 755 2026-08-14T03:04:50,388 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/CpG_distrb_region.py to 755 2026-08-14T03:04:50,389 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/CpG_distrb_chrom.py to 755 2026-08-14T03:04:50,390 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_PCA.py to 755 2026-08-14T03:04:50,390 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_combat.py to 755 2026-08-14T03:04:50,391 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_stats.py to 755 2026-08-14T03:04:50,392 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/dmc_ttest.py to 755 2026-08-14T03:04:50,393 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/dmc_nonparametric.py to 755 2026-08-14T03:04:50,393 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_trichotmize.py to 755 2026-08-14T03:04:50,394 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/predict_sex.py to 755 2026-08-14T03:04:50,395 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_profile_region.py to 755 2026-08-14T03:04:50,396 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_UMAP.py to 755 2026-08-14T03:04:50,396 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_profile_gene_centered.py to 755 2026-08-14T03:04:50,397 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/CpG_density_gene_centered.py to 755 2026-08-14T03:04:50,397 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_selectNBest.py to 755 2026-08-14T03:04:50,397 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_deconvolution.py to 755 2026-08-14T03:04:50,398 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_jitter_plot.py to 755 2026-08-14T03:04:50,398 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/CpG_anno_position.py to 755 2026-08-14T03:04:50,399 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/dmc_Bayes.py to 755 2026-08-14T03:04:50,399 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_impute.py to 755 2026-08-14T03:04:50,400 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/CpG_aggregation.py to 755 2026-08-14T03:04:50,400 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/CpG_to_gene.py to 755 2026-08-14T03:04:50,401 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_topN.py to 755 2026-08-14T03:04:50,401 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/CpG_logo.py to 755 2026-08-14T03:04:50,402 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_stacked_barplot.py to 755 2026-08-14T03:04:50,402 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/beta_m_conversion.py to 755 2026-08-14T03:04:50,403 changing mode of build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.data/scripts/CpG_distrb_gene_centered.py to 755 2026-08-14T03:04:50,413 creating build/bdist.linux-armv7l/wheel/cpgtools-3.0.2.dist-info/WHEEL 2026-08-14T03:04:50,416 creating '/tmp/pip-wheel-937oofi4/.tmp-y07gyhrp/cpgtools-3.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-08-14T03:04:50,420 adding 'cpgmodule/BED.py' 2026-08-14T03:04:50,422 adding 'cpgmodule/MI.py' 2026-08-14T03:04:50,423 adding 'cpgmodule/__init__.py' 2026-08-14T03:04:50,424 adding 'cpgmodule/_version.py' 2026-08-14T03:04:53,617 adding 'cpgmodule/cgID.py' 2026-08-14T03:04:53,717 adding 'cpgmodule/extend_bed.py' 2026-08-14T03:04:53,719 adding 'cpgmodule/imotif.py' 2026-08-14T03:04:53,721 adding 'cpgmodule/ireader.py' 2026-08-14T03:04:53,722 adding 'cpgmodule/methylClock.py' 2026-08-14T03:04:53,724 adding 'cpgmodule/padjust.py' 2026-08-14T03:04:53,725 adding 'cpgmodule/region2gene.py' 2026-08-14T03:04:53,728 adding 'cpgmodule/utils.py' 2026-08-14T03:04:53,731 adding 'cpgmodule/cli/CpG_aggregation.py' 2026-08-14T03:04:53,733 adding 'cpgmodule/cli/CpG_anno_position.py' 2026-08-14T03:04:53,735 adding 'cpgmodule/cli/CpG_anno_probe.py' 2026-08-14T03:04:53,737 adding 'cpgmodule/cli/CpG_density_gene_centered.py' 2026-08-14T03:04:53,739 adding 'cpgmodule/cli/CpG_distrb_chrom.py' 2026-08-14T03:04:53,741 adding 'cpgmodule/cli/CpG_distrb_gene_centered.py' 2026-08-14T03:04:53,743 adding 'cpgmodule/cli/CpG_distrb_region.py' 2026-08-14T03:04:53,745 adding 'cpgmodule/cli/CpG_logo.py' 2026-08-14T03:04:53,747 adding 'cpgmodule/cli/CpG_to_gene.py' 2026-08-14T03:04:53,748 adding 'cpgmodule/cli/__init__.py' 2026-08-14T03:04:53,751 adding 'cpgmodule/cli/beta_PCA.py' 2026-08-14T03:04:53,753 adding 'cpgmodule/cli/beta_UMAP.py' 2026-08-14T03:04:53,755 adding 'cpgmodule/cli/beta_combat.py' 2026-08-14T03:04:53,758 adding 'cpgmodule/cli/beta_deconvolution.py' 2026-08-14T03:04:53,762 adding 'cpgmodule/cli/beta_impute.py' 2026-08-14T03:04:53,764 adding 'cpgmodule/cli/beta_jitter_plot.py' 2026-08-14T03:04:53,766 adding 'cpgmodule/cli/beta_m_conversion.py' 2026-08-14T03:04:53,768 adding 'cpgmodule/cli/beta_profile_gene_centered.py' 2026-08-14T03:04:53,770 adding 'cpgmodule/cli/beta_profile_region.py' 2026-08-14T03:04:53,772 adding 'cpgmodule/cli/beta_selectNBest.py' 2026-08-14T03:04:53,774 adding 'cpgmodule/cli/beta_stacked_barplot.py' 2026-08-14T03:04:53,775 adding 'cpgmodule/cli/beta_stats.py' 2026-08-14T03:04:53,777 adding 'cpgmodule/cli/beta_tSNE.py' 2026-08-14T03:04:53,779 adding 'cpgmodule/cli/beta_topN.py' 2026-08-14T03:04:53,782 adding 'cpgmodule/cli/beta_trichotmize.py' 2026-08-14T03:04:53,784 adding 'cpgmodule/cli/dmc_Bayes.py' 2026-08-14T03:04:53,786 adding 'cpgmodule/cli/dmc_bb.py' 2026-08-14T03:04:53,788 adding 'cpgmodule/cli/dmc_fisher.py' 2026-08-14T03:04:53,790 adding 'cpgmodule/cli/dmc_glm.py' 2026-08-14T03:04:53,793 adding 'cpgmodule/cli/dmc_logit.py' 2026-08-14T03:04:53,795 adding 'cpgmodule/cli/dmc_nonparametric.py' 2026-08-14T03:04:53,798 adding 'cpgmodule/cli/dmc_ttest.py' 2026-08-14T03:04:53,800 adding 'cpgmodule/cli/epical.py' 2026-08-14T03:04:53,802 adding 'cpgmodule/cli/predict_sex.py' 2026-08-14T03:04:53,849 adding 'cpgmodule/data/AltumAge_cpg.pkl' 2026-08-14T03:04:53,898 adding 'cpgmodule/data/AltumAge_multi_platform_cpgs.pkl' 2026-08-14T03:04:53,945 adding 'cpgmodule/data/AltumAge_scaler.pkl' 2026-08-14T03:04:53,949 adding 'cpgmodule/data/GA_Bohlin.pkl' 2026-08-14T03:04:53,951 adding 'cpgmodule/data/GA_Haftorn.pkl' 2026-08-14T03:04:53,955 adding 'cpgmodule/data/GA_Knight.pkl' 2026-08-14T03:04:53,960 adding 'cpgmodule/data/GA_Lee_CPC.pkl' 2026-08-14T03:04:53,964 adding 'cpgmodule/data/GA_Lee_RPC.pkl' 2026-08-14T03:04:53,968 adding 'cpgmodule/data/GA_Lee_refined_RPC.pkl' 2026-08-14T03:04:53,970 adding 'cpgmodule/data/GA_Mayne.pkl' 2026-08-14T03:04:53,971 adding 'cpgmodule/data/Hannum.pkl' 2026-08-14T03:04:53,973 adding 'cpgmodule/data/Horvath_2013.pkl' 2026-08-14T03:04:53,976 adding 'cpgmodule/data/Horvath_2018.pkl' 2026-08-14T03:04:53,978 adding 'cpgmodule/data/Levine.pkl' 2026-08-14T03:04:53,980 adding 'cpgmodule/data/Lu_DNAmTL.pkl' 2026-08-14T03:04:53,981 adding 'cpgmodule/data/Ped_McEwen.pkl' 2026-08-14T03:04:53,983 adding 'cpgmodule/data/Ped_Wu.pkl' 2026-08-14T03:04:56,060 adding 'cpgmodule/data/Zhang_BLUP.pkl' 2026-08-14T03:04:56,107 adding 'cpgmodule/data/Zhang_EN.pkl' 2026-08-14T03:04:56,108 adding 'cpgmodule/data/__init__.py' 2026-08-14T03:04:56,150 adding 'cpgmodule/deconv_data/Reference_CellTrace.beta.tsv' 2026-08-14T03:04:56,173 adding 'cpgmodule/deconv_data/Reference_EpiDISH.beta.tsv' 2026-08-14T03:04:56,176 adding 'cpgtools-3.0.2.data/scripts/CpG_aggregation.py' 2026-08-14T03:04:56,178 adding 'cpgtools-3.0.2.data/scripts/CpG_anno_position.py' 2026-08-14T03:04:56,179 adding 'cpgtools-3.0.2.data/scripts/CpG_anno_probe.py' 2026-08-14T03:04:56,180 adding 'cpgtools-3.0.2.data/scripts/CpG_density_gene_centered.py' 2026-08-14T03:04:56,181 adding 'cpgtools-3.0.2.data/scripts/CpG_distrb_chrom.py' 2026-08-14T03:04:56,182 adding 'cpgtools-3.0.2.data/scripts/CpG_distrb_gene_centered.py' 2026-08-14T03:04:56,183 adding 'cpgtools-3.0.2.data/scripts/CpG_distrb_region.py' 2026-08-14T03:04:56,185 adding 'cpgtools-3.0.2.data/scripts/CpG_logo.py' 2026-08-14T03:04:56,186 adding 'cpgtools-3.0.2.data/scripts/CpG_to_gene.py' 2026-08-14T03:04:56,187 adding 'cpgtools-3.0.2.data/scripts/beta_PCA.py' 2026-08-14T03:04:56,188 adding 'cpgtools-3.0.2.data/scripts/beta_UMAP.py' 2026-08-14T03:04:56,189 adding 'cpgtools-3.0.2.data/scripts/beta_combat.py' 2026-08-14T03:04:56,191 adding 'cpgtools-3.0.2.data/scripts/beta_deconvolution.py' 2026-08-14T03:04:56,192 adding 'cpgtools-3.0.2.data/scripts/beta_impute.py' 2026-08-14T03:04:56,193 adding 'cpgtools-3.0.2.data/scripts/beta_jitter_plot.py' 2026-08-14T03:04:56,194 adding 'cpgtools-3.0.2.data/scripts/beta_m_conversion.py' 2026-08-14T03:04:56,195 adding 'cpgtools-3.0.2.data/scripts/beta_profile_gene_centered.py' 2026-08-14T03:04:56,197 adding 'cpgtools-3.0.2.data/scripts/beta_profile_region.py' 2026-08-14T03:04:56,198 adding 'cpgtools-3.0.2.data/scripts/beta_selectNBest.py' 2026-08-14T03:04:56,199 adding 'cpgtools-3.0.2.data/scripts/beta_stacked_barplot.py' 2026-08-14T03:04:56,200 adding 'cpgtools-3.0.2.data/scripts/beta_stats.py' 2026-08-14T03:04:56,201 adding 'cpgtools-3.0.2.data/scripts/beta_tSNE.py' 2026-08-14T03:04:56,202 adding 'cpgtools-3.0.2.data/scripts/beta_topN.py' 2026-08-14T03:04:56,203 adding 'cpgtools-3.0.2.data/scripts/beta_trichotmize.py' 2026-08-14T03:04:56,204 adding 'cpgtools-3.0.2.data/scripts/dmc_Bayes.py' 2026-08-14T03:04:56,205 adding 'cpgtools-3.0.2.data/scripts/dmc_bb.py' 2026-08-14T03:04:56,207 adding 'cpgtools-3.0.2.data/scripts/dmc_fisher.py' 2026-08-14T03:04:56,208 adding 'cpgtools-3.0.2.data/scripts/dmc_glm.py' 2026-08-14T03:04:56,209 adding 'cpgtools-3.0.2.data/scripts/dmc_logit.py' 2026-08-14T03:04:56,210 adding 'cpgtools-3.0.2.data/scripts/dmc_nonparametric.py' 2026-08-14T03:04:56,211 adding 'cpgtools-3.0.2.data/scripts/dmc_ttest.py' 2026-08-14T03:04:56,212 adding 'cpgtools-3.0.2.data/scripts/predict_sex.py' 2026-08-14T03:04:56,215 adding 'cpgtools-3.0.2.dist-info/licenses/LICENSE.txt' 2026-08-14T03:04:56,217 adding 'dmc/DunedinPACE.py' 2026-08-14T03:04:56,218 adding 'dmc/__init__.py' 2026-08-14T03:04:56,219 adding 'dmc/_version.py' 2026-08-14T03:04:59,412 adding 'dmc/cgID.py' 2026-08-14T03:04:59,512 adding 'dmc/clock_info.py' 2026-08-14T03:04:59,514 adding 'dmc/helpdoc.py' 2026-08-14T03:04:59,515 adding 'dmc/imputation.py' 2026-08-14T03:04:59,517 adding 'dmc/ireader.py' 2026-08-14T03:04:59,521 adding 'dmc/methylclocks.py' 2026-08-14T03:04:59,523 adding 'dmc/methyldat.py' 2026-08-14T03:04:59,525 adding 'dmc/tf_mse.py' 2026-08-14T03:04:59,527 adding 'dmc/utils.py' 2026-08-14T03:05:00,635 adding 'dmc/data/AltumAge.h5' 2026-08-14T03:05:00,733 adding 'dmc/data/AltumAge.pkl' 2026-08-14T03:05:00,738 adding 'dmc/data/Cortical.pkl' 2026-08-14T03:05:00,739 adding 'dmc/data/DunedinPACE.pkl' 2026-08-14T03:05:00,741 adding 'dmc/data/ENCen100.pkl' 2026-08-14T03:05:00,743 adding 'dmc/data/ENCen40.pkl' 2026-08-14T03:05:00,745 adding 'dmc/data/GA_Bohlin.pkl' 2026-08-14T03:05:00,746 adding 'dmc/data/GA_Haftorn.pkl' 2026-08-14T03:05:00,748 adding 'dmc/data/GA_Knight.pkl' 2026-08-14T03:05:00,752 adding 'dmc/data/GA_Lee_CPC.pkl' 2026-08-14T03:05:00,756 adding 'dmc/data/GA_Lee_RPC.pkl' 2026-08-14T03:05:00,758 adding 'dmc/data/GA_Lee_rRPC.pkl' 2026-08-14T03:05:00,760 adding 'dmc/data/GA_Mayne.pkl' 2026-08-14T03:05:00,761 adding 'dmc/data/Hannum.pkl' 2026-08-14T03:05:00,764 adding 'dmc/data/Horvath13.pkl' 2026-08-14T03:05:00,765 adding 'dmc/data/Horvath13_shrunk.pkl' 2026-08-14T03:05:00,768 adding 'dmc/data/Horvath18.pkl' 2026-08-14T03:05:00,772 adding 'dmc/data/Levine.pkl' 2026-08-14T03:05:00,773 adding 'dmc/data/Lin.pkl' 2026-08-14T03:05:00,775 adding 'dmc/data/Lu_DNAmTL.pkl' 2026-08-14T03:05:00,777 adding 'dmc/data/MEAT.pkl' 2026-08-14T03:05:00,779 adding 'dmc/data/PedBE.pkl' 2026-08-14T03:05:00,780 adding 'dmc/data/Ped_Wu.pkl' 2026-08-14T03:05:00,783 adding 'dmc/data/WLMT_mm10.pkl' 2026-08-14T03:05:00,786 adding 'dmc/data/WLMT_mm39.pkl' 2026-08-14T03:05:00,788 adding 'dmc/data/Weidner.pkl' 2026-08-14T03:05:00,790 adding 'dmc/data/YOMT_mm10.pkl' 2026-08-14T03:05:00,792 adding 'dmc/data/YOMT_mm39.pkl' 2026-08-14T03:05:03,337 adding 'dmc/data/Zhang_BLUP.pkl' 2026-08-14T03:05:03,394 adding 'dmc/data/Zhang_EN.pkl' 2026-08-14T03:05:03,395 adding 'dmc/data/__init__.py' 2026-08-14T03:05:03,397 adding 'dmc/data/mammClock1.pkl' 2026-08-14T03:05:03,403 adding 'dmc/data/mammClock2.pkl' 2026-08-14T03:05:03,408 adding 'dmc/data/mammClock3.pkl' 2026-08-14T03:05:03,409 adding 'dmc/data/mmBlood_mm10.pkl' 2026-08-14T03:05:03,411 adding 'dmc/data/mmBlood_mm39.pkl' 2026-08-14T03:05:03,413 adding 'dmc/data/mmLiver_mm10.pkl' 2026-08-14T03:05:03,414 adding 'dmc/data/mmLiver_mm39.pkl' 2026-08-14T03:05:03,460 adding 'dmc/data/multi_platform_cpgs.pkl' 2026-08-14T03:05:03,508 adding 'dmc/data/scaler.pkl' 2026-08-14T03:05:03,512 adding 'dmc/data/__pycache__/__init__.cpython-313.pyc' 2026-08-14T03:05:03,513 adding 'impute_module/__init__.py' 2026-08-14T03:05:03,516 adding 'impute_module/blockimpute.py' 2026-08-14T03:05:03,518 adding 'impute_module/bootstrap.py' 2026-08-14T03:05:03,520 adding 'impute_module/common.py' 2026-08-14T03:05:03,522 adding 'impute_module/extref.py' 2026-08-14T03:05:03,530 adding 'impute_module/imputelib.py' 2026-08-14T03:05:03,533 adding 'impute_module/softimpute.py' 2026-08-14T03:05:03,535 adding 'impute_module/solver.py' 2026-08-14T03:05:03,536 adding 'cpgtools-3.0.2.dist-info/METADATA' 2026-08-14T03:05:03,537 adding 'cpgtools-3.0.2.dist-info/WHEEL' 2026-08-14T03:05:03,538 adding 'cpgtools-3.0.2.dist-info/entry_points.txt' 2026-08-14T03:05:03,539 adding 'cpgtools-3.0.2.dist-info/top_level.txt' 2026-08-14T03:05:03,542 adding 'cpgtools-3.0.2.dist-info/RECORD' 2026-08-14T03:05:03,850 removing build/bdist.linux-armv7l/wheel 2026-08-14T03:05:04,011 Building wheel for cpgtools (pyproject.toml): finished with status 'done' 2026-08-14T03:05:04,612 Created wheel for cpgtools: filename=cpgtools-3.0.2-py3-none-any.whl size=29127570 sha256=8e6be4537427185f3aafbdfad81347f536ec1e5fd0546da2a2d9620a9f14e87c 2026-08-14T03:05:04,613 Stored in directory: /tmp/pip-ephem-wheel-cache-p0fr3fgb/wheels/a5/47/4d/45631fa6fe51dca3eb4476ca7181b4ed8445ab8e3fcd1a7ba9 2026-08-14T03:05:04,651 Successfully built cpgtools 2026-08-14T03:05:05,367 Removed build tracker: '/tmp/pip-build-tracker-d8n3js21'