2026-08-20T06:37:57,059 Created temporary directory: /tmp/pip-ephem-wheel-cache-8bm_5_41 2026-08-20T06:37:57,061 Created temporary directory: /tmp/pip-build-tracker-cgzi394n 2026-08-20T06:37:57,061 Initialized build tracking at /tmp/pip-build-tracker-cgzi394n 2026-08-20T06:37:57,062 Created build tracker: /tmp/pip-build-tracker-cgzi394n 2026-08-20T06:37:57,062 Entered build tracker: /tmp/pip-build-tracker-cgzi394n 2026-08-20T06:37:57,063 Created temporary directory: /tmp/pip-wheel-gxcc8413 2026-08-20T06:37:57,066 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-20T06:37:57,068 Created temporary directory: /tmp/pip-ephem-wheel-cache-51l653zw 2026-08-20T06:37:57,090 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-20T06:37:57,093 2 location(s) to search for versions of bioscrape: 2026-08-20T06:37:57,093 * https://pypi.org/simple/bioscrape/ 2026-08-20T06:37:57,093 * https://www.piwheels.org/simple/bioscrape/ 2026-08-20T06:37:57,094 Fetching project page and analyzing links: https://pypi.org/simple/bioscrape/ 2026-08-20T06:37:57,095 Getting page https://pypi.org/simple/bioscrape/ 2026-08-20T06:37:57,096 Found index url https://pypi.org/simple 2026-08-20T06:37:57,343 Fetched page https://pypi.org/simple/bioscrape/ as application/vnd.pypi.simple.v1+json 2026-08-20T06:37:57,354 Found link https://files.pythonhosted.org/packages/0c/22/e9fa3067657b389f96a90736bba21abacacc056c984cedcd1df82440b976/bioscrape-1.0.2.tar.gz (from https://pypi.org/simple/bioscrape/), version: 1.0.2 2026-08-20T06:37:57,355 Found link https://files.pythonhosted.org/packages/75/f5/7b5c7157119c5a3b7042e559cd20797125cb5e58cbe93046a2f3c237eb34/bioscrape-1.0.2.1.tar.gz (from https://pypi.org/simple/bioscrape/), version: 1.0.2.1 2026-08-20T06:37:57,356 Found link https://files.pythonhosted.org/packages/6b/7a/49938026e6b712ff6f93e353babcb85ac8db35d92a966ae39f30ef727eb4/bioscrape-1.0.2.2.tar.gz (from https://pypi.org/simple/bioscrape/), version: 1.0.2.2 2026-08-20T06:37:57,356 Found link https://files.pythonhosted.org/packages/44/9f/7dad2a85d729b705eb9d81bb133efa54e9d9f6fad1dd48b113524655a67c/bioscrape-1.0.3.tar.gz (from https://pypi.org/simple/bioscrape/), version: 1.0.3 2026-08-20T06:37:57,357 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/ba/1b/2ad1ffcaf9d71e67a66177ca9a3b71a5a20981f890909856dc165f8dd28c/bioscrape-1.0.4-py3.9-win-amd64.egg (from https://pypi.org/simple/bioscrape/) 2026-08-20T06:37:57,358 Found link https://files.pythonhosted.org/packages/20/c4/aef522565064181d05c470a5d3e8d7ee070792c38969041db51ee274e8a2/bioscrape-1.0.4.tar.gz (from https://pypi.org/simple/bioscrape/), version: 1.0.4 2026-08-20T06:37:57,358 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/3b/61/28f6981753b4c5dd0f8caae0f14b12b4ae8cdc41fe2fe457175fb2e2bbbf/bioscrape-1.1.0-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,359 Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/0a/a5/1377480b761f3ed7241ae7f6e692c62a5a04209877caef36ec6b8c9364ff/bioscrape-1.1.0-py3.9-win-amd64.egg (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,360 Found link https://files.pythonhosted.org/packages/bf/97/3d059aed33d22fb9ade1007310649b0c53335f76a5db010155c97d06c438/bioscrape-1.1.0.tar.gz (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.6), version: 1.1.0 2026-08-20T06:37:57,361 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/d8/06/7520de3eebf3f564bf8b6f8dc023f45d4c99ee8b2257cc96d5736d55a2cb/bioscrape-1.2.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,362 Found link https://files.pythonhosted.org/packages/5e/48/73d5437aa9167e88d2452aa9e12b6ed7613a5a4b0c9c76c967eb5d6e87df/bioscrape-1.2.0.tar.gz (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.6), version: 1.2.0 2026-08-20T06:37:57,363 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/f3/d6/88e220bd59d5c5c2980faada66cb02e4ff82450a9ba6cc00d52e530488a7/bioscrape-1.2.1-cp37-cp37m-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,364 Found link https://files.pythonhosted.org/packages/38/98/4ba083b3b2e349c2043af33b8de46922572bf8db8cdb16fc70d633701f29/bioscrape-1.2.1.tar.gz (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.6), version: 1.2.1 2026-08-20T06:37:57,365 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/6b/45/45613a281dd21a8772675bc7250344be5b0a33050f75c39fb1a1c4233340/Bioscrape-1.2.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.7) 2026-08-20T06:37:57,365 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/c7/7a/d632320e71f449e91d3adeadd6252841fdd750b1e65dcc86c2de564215d9/Bioscrape-1.3.0-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.7) 2026-08-20T06:37:57,366 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/94/46/a5bacf589795fc3020edc5627235138272c857d46908221f8100083bda4c/bioscrape-1.4.0-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,366 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/39/9f/8fce65af6c408ea419cb7d40c3d5c549873f739fa62276b5cdfdc0957530/bioscrape-1.4.0-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,367 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/a0/68/e3a5f790ab588101bd1c2e4ccd23c5dda6ad274e7a60b0d9ddda22b99808/bioscrape-1.4.0-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,367 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/4f/b4/b4b68a1f5a9896d0643f204dffa72d78735c2e0adc95192c9a2da045d276/bioscrape-1.4.0-cp310-cp310-win32.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,368 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/73/ed/7f6242651e1027e4dfa2ef15d1500767cf564dd22451b9dc6dc253f598b9/bioscrape-1.4.0-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,369 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/21/4d/d76d793307721fc0526fe3806e84393be3c8baaa3573fc5acbd6513dfd46/bioscrape-1.4.0-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,369 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/af/f2/c060b981e71ddf00c39255332af180bbaf7a066cbab8b7bf0f70dd041f67/bioscrape-1.4.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,370 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/e8/22/6baef51e3438458ec2dc4ac6c7015f1e29e75f16735dc23d689e0e2c5697/bioscrape-1.4.0-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,370 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/d7/cc/12d49fe91593e0ee04bfd5dd88decdb11d55bab69a873cfa95059c14d621/bioscrape-1.4.0-cp311-cp311-win32.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,371 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/9a/24/cb6ad6eba262cfb3d8bb3abef47bd80aad876765f0641636026ff1961bc8/bioscrape-1.4.0-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,372 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/58/34/fcb78d54746078c16a21f002ff932bd798d31d06b72196e1c429c2ec41e3/bioscrape-1.4.0-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,372 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/a2/92/f95f6845c7d757e83df6630b9caa45a2f0ae0f7b1b73ceb8295c0f23676a/bioscrape-1.4.0-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.8) 2026-08-20T06:37:57,373 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/bb/83/2a8533c0be6b773a9e4b32b30b7177b210fa0a07c4b960070621dfa83fca/bioscrape-1.4.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,373 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/b7/1d/41060b984a84dc3e33f4e3b06af3fc1b1424a172c439f8c944f2a07b292d/bioscrape-1.4.1-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,374 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/39/64/9c4c5f5931834a5af0ab12383f6d43e2bfd277c8541c96eec43ffe910d8f/bioscrape-1.4.1-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,374 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/b7/c3/fa4876c7fc22d4de028a7f19a10a58a4ca29d562153ae34db3c9f2dedf69/bioscrape-1.4.1-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,375 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/ce/ff/231e504cc51e42a84bee3414375bf3bf31fb847e84500707d666e2782586/bioscrape-1.4.1-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,375 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/7d/9e/76cd89339cd2a642b37453bba9ad32a9a53f5022d192c2a177ca79814843/bioscrape-1.4.1-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,376 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/be/e8/7fdfe84201892a01f0bf15ce98c1e031ad4c2aeb00c33c2427596c219082/bioscrape-1.4.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,377 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/ee/22/dccc14777916cf300f915882228f61c0ca7eeda8ab1765a08e22af2da82b/bioscrape-1.4.1-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,377 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/8a/97/cff037bc7b93b1d378b13da44dec82a60c13d434325f6e906b0e0db93f82/bioscrape-1.4.1-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,378 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/df/da/f42660d53440256ba46f0006175a77ef46ec3c277e1327825084e2f28db4/bioscrape-1.4.1-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,378 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/dc/86/333e8781da1d8aaf8e72ed3932f639adffefa7ae4e8a085f84918a354376/bioscrape-1.4.1-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,379 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/af/e3/8be5528ba1ed9929d155bec0e2252a5a29adcff8876ea61645e40578f177/bioscrape-1.4.1-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,380 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/fb/ef/aee63ca8fec7c22776fd58c76bb71ab79e8622ea65b380e8f8e190f2bc51/bioscrape-1.4.1-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,380 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/2b/98/d7f997ebbc726e2ebd080b2f1a459fb96bc0e61d18a788eca66221a2934c/bioscrape-1.4.1-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,381 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/ae/02/275e1ebf3cd638ea287604651604b136547942cd69b850914be685e8c08b/bioscrape-1.4.1-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,381 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/20/8b/ca34ed2de9abc934f4564bfd3cab60ea10e46629fa69b2ad84d967450987/bioscrape-1.4.1-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,382 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/9e/92/1fcf4a431012fffeafa7d8fba5851d84f7026159dda6b1eac02ee15f3d65/bioscrape-1.4.1-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,382 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/03/2a/ddd1b9ab7803009ec5a20bfc302fc39299583630bac4db1fc11e4fc3aa73/bioscrape-1.4.1-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,383 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/13/b4/03af202fb8cb27471fe6d5c222839be3fe0e509fc6329d62b2667386d786/bioscrape-1.4.1-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,383 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/b6/e0/cd33f04181f5c613419973a0f8a4d5735f79c754618e8b86db2b5e8dfd99/bioscrape-1.4.1-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,384 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/78/64/765ea139b44766e090efff703736b02e4318fe8448d9120afec1699cbfb1/bioscrape-1.4.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,384 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/f3/d8/797f135c1603c338505d55f349fc8f41e05606939472dcab6261c31d7b6a/bioscrape-1.4.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,385 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/e9/d5/066715adca60d2f8289422af72664342168b75333d71e09683124872463f/bioscrape-1.4.1-cp39-cp39-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,385 Skipping link: No binaries permitted for bioscrape: https://files.pythonhosted.org/packages/83/86/8ddcc8984d637ee1010832eab3625bda2991402344e6396b371be4945dab/bioscrape-1.4.1-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9) 2026-08-20T06:37:57,386 Found link https://files.pythonhosted.org/packages/97/ff/d899a6028e8fca0276688b4670c1c1d0db4c6b4d5130d8429e358eea9aca/bioscrape-1.4.1.tar.gz (from https://pypi.org/simple/bioscrape/) (requires-python:>=3.9), version: 1.4.1 2026-08-20T06:37:57,388 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioscrape/ 2026-08-20T06:37:57,388 Getting page https://www.piwheels.org/simple/bioscrape/ 2026-08-20T06:37:57,389 Found index url https://www.piwheels.org/simple 2026-08-20T06:37:57,592 Fetched page https://www.piwheels.org/simple/bioscrape/ as text/html 2026-08-20T06:37:57,604 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=8a9fbff1a372b8f6717354b69bfa683d77c6e64a99785ab5b470702909f34a8d (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,605 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=8a9fbff1a372b8f6717354b69bfa683d77c6e64a99785ab5b470702909f34a8d (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,606 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.2.1-cp39-cp39-linux_armv6l.whl#sha256=1bcc3bec0e129bfeaf3531ce4fae15775687070c419c5c1842193fbda4130cdb (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,606 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.2.1-cp39-cp39-linux_armv7l.whl#sha256=1bcc3bec0e129bfeaf3531ce4fae15775687070c419c5c1842193fbda4130cdb (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,607 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.2.0-cp37-cp37m-linux_armv6l.whl#sha256=d6c84d98a3b5d2d28daf7910e8fd0c3e0483b14f085d123549fcc7971469da8f (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,607 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.2.0-cp37-cp37m-linux_armv7l.whl#sha256=d6c84d98a3b5d2d28daf7910e8fd0c3e0483b14f085d123549fcc7971469da8f (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,608 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.2.0-cp39-cp39-linux_armv6l.whl#sha256=81cb8b5ad98fe393427baadebaf000546f8a391fe75c474bd0266d9ccfd83f0a (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,609 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.2.0-cp39-cp39-linux_armv7l.whl#sha256=81cb8b5ad98fe393427baadebaf000546f8a391fe75c474bd0266d9ccfd83f0a (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,609 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.1.0-cp37-cp37m-linux_armv6l.whl#sha256=d6cec47dd1c48a1d8fcb0330a7dd2a5b12bc23003cc9fb3c5a1a09ffd78e6560 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,610 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.1.0-cp37-cp37m-linux_armv7l.whl#sha256=d6cec47dd1c48a1d8fcb0330a7dd2a5b12bc23003cc9fb3c5a1a09ffd78e6560 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,610 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=22392b2f427deabfdea356b6ac55c3155afbc72435fea0a7fd29b3d06397832f (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,611 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=22392b2f427deabfdea356b6ac55c3155afbc72435fea0a7fd29b3d06397832f (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,612 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.4-cp37-cp37m-linux_armv6l.whl#sha256=417e5aec8c9b4859d8b7e2fb305cf9ed077d2307a1213abdb59704db3c8d2829 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,613 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.4-cp37-cp37m-linux_armv7l.whl#sha256=417e5aec8c9b4859d8b7e2fb305cf9ed077d2307a1213abdb59704db3c8d2829 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,613 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.4-cp39-cp39-linux_armv6l.whl#sha256=02cae05f27f680afc960696a3bc00b3daf0a723f26220b4b852eae4ae5b651bb (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,614 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.4-cp39-cp39-linux_armv7l.whl#sha256=02cae05f27f680afc960696a3bc00b3daf0a723f26220b4b852eae4ae5b651bb (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,614 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.3-cp37-cp37m-linux_armv6l.whl#sha256=dd39f635d1c7199683227ceac02f25f922636c9885c0cb6e8158c2c8e51cb2ce (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,615 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.3-cp37-cp37m-linux_armv7l.whl#sha256=dd39f635d1c7199683227ceac02f25f922636c9885c0cb6e8158c2c8e51cb2ce (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,615 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.3-cp39-cp39-linux_armv6l.whl#sha256=74438fb5c4b8f66236ce6468f1d30c624381192f5266a672f5ba33a63a144190 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,616 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.3-cp39-cp39-linux_armv7l.whl#sha256=74438fb5c4b8f66236ce6468f1d30c624381192f5266a672f5ba33a63a144190 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,617 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.2-cp37-cp37m-linux_armv6l.whl#sha256=192f506de67a941d59aadca64e9a31a6ffa94589b367e52006db6fdc07786ea0 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,617 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.2-cp37-cp37m-linux_armv7l.whl#sha256=192f506de67a941d59aadca64e9a31a6ffa94589b367e52006db6fdc07786ea0 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,618 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.2-cp39-cp39-linux_armv6l.whl#sha256=ae93564915bb90732c2697229827147b8969883e0ee926b182a47b42dd1fdebc (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,619 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.2-cp39-cp39-linux_armv7l.whl#sha256=ae93564915bb90732c2697229827147b8969883e0ee926b182a47b42dd1fdebc (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,619 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.2-cp313-cp313-linux_armv6l.whl#sha256=72ec72d28f5276035cf34258be2bccad2cd599c550b6ab596cb6a94601a8ce4f (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,620 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.2-cp313-cp313-linux_armv7l.whl#sha256=72ec72d28f5276035cf34258be2bccad2cd599c550b6ab596cb6a94601a8ce4f (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,621 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.1-cp37-cp37m-linux_armv6l.whl#sha256=4fc78676dc2c35b28459fb97c39c4ba04ec574eb45c32daf551e670cedfb1f88 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,621 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.1-cp37-cp37m-linux_armv7l.whl#sha256=4fc78676dc2c35b28459fb97c39c4ba04ec574eb45c32daf551e670cedfb1f88 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,621 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.1-cp39-cp39-linux_armv6l.whl#sha256=1c4fb71d3cba008596f16d0b6b20e11f4750c40ffe90981fa363099463abea36 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,622 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.1-cp39-cp39-linux_armv7l.whl#sha256=1c4fb71d3cba008596f16d0b6b20e11f4750c40ffe90981fa363099463abea36 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,622 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.1-cp313-cp313-linux_armv6l.whl#sha256=d2444c901afe4b9ef7108cbfddcae6ce39be9a764e7b584389f2faaa69f0ee01 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,623 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2.1-cp313-cp313-linux_armv7l.whl#sha256=d2444c901afe4b9ef7108cbfddcae6ce39be9a764e7b584389f2faaa69f0ee01 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,624 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2-cp37-cp37m-linux_armv6l.whl#sha256=83fce4ab312032ca902c1ba08a2b50b6b5de24babe9b4140c520e235b9957704 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,624 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2-cp37-cp37m-linux_armv7l.whl#sha256=83fce4ab312032ca902c1ba08a2b50b6b5de24babe9b4140c520e235b9957704 (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,625 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=f5586551025dcd3c2553db761ce5dc3eae080a4261a513128bf56e6c4004ffba (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,626 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=f5586551025dcd3c2553db761ce5dc3eae080a4261a513128bf56e6c4004ffba (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,626 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2-cp313-cp313-linux_armv7l.whl#sha256=a0779d7e1b6414bfb564a581b7bbcecf284c27c542b4f3a28a144634cbfdb48d (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,627 Skipping link: No binaries permitted for bioscrape: https://archive1.piwheels.org/simple/bioscrape/bioscrape-1.0.2-cp313-cp313-linux_armv6l.whl#sha256=a0779d7e1b6414bfb564a581b7bbcecf284c27c542b4f3a28a144634cbfdb48d (from https://www.piwheels.org/simple/bioscrape/) (requires-python:>=3.6) 2026-08-20T06:37:57,628 Skipping link: not a file: https://www.piwheels.org/simple/bioscrape/ 2026-08-20T06:37:57,628 Skipping link: not a file: https://pypi.org/simple/bioscrape/ 2026-08-20T06:37:57,648 Given no hashes to check 1 links for project 'bioscrape': discarding no candidates 2026-08-20T06:37:57,667 Collecting bioscrape==1.4.1 2026-08-20T06:37:57,669 Created temporary directory: /tmp/pip-unpack-jw_iu8wr 2026-08-20T06:37:57,839 Downloading bioscrape-1.4.1.tar.gz (16.3 MB) 2026-08-20T06:38:00,830 Added bioscrape==1.4.1 from https://files.pythonhosted.org/packages/97/ff/d899a6028e8fca0276688b4670c1c1d0db4c6b4d5130d8429e358eea9aca/bioscrape-1.4.1.tar.gz to build tracker '/tmp/pip-build-tracker-cgzi394n' 2026-08-20T06:38:00,842 Created temporary directory: /tmp/pip-build-env-qhbs35qy 2026-08-20T06:38:00,849 Installing build dependencies: started 2026-08-20T06:38:00,850 Running command pip subprocess to install build dependencies 2026-08-20T06:38:01,996 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-08-20T06:38:02,422 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-20T06:38:02,445 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-20T06:38:04,245 Collecting setuptools>=64 2026-08-20T06:38:04,246 Obtaining dependency information for setuptools>=64 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-08-20T06:38:04,260 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-08-20T06:38:04,614 Collecting setuptools-scm>=9.2 2026-08-20T06:38:04,615 Obtaining dependency information for setuptools-scm>=9.2 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl.metadata 2026-08-20T06:38:04,630 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl.metadata (6.7 kB) 2026-08-20T06:38:06,917 Collecting Cython 2026-08-20T06:38:06,918 Obtaining dependency information for Cython from https://www.piwheels.org/simple/cython/cython-3.2.9-cp311-cp311-linux_armv7l.whl.metadata 2026-08-20T06:38:06,934 Using cached https://www.piwheels.org/simple/cython/cython-3.2.9-cp311-cp311-linux_armv7l.whl.metadata (4.6 kB) 2026-08-20T06:38:08,076 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-08-20T06:38:08,084 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-08-20T06:38:08,090 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-08-20T06:38:08,097 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-08-20T06:38:08,104 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-08-20T06:38:08,556 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/d3/e1/f2fe8f6113a657a1da83b358b16755e528a602c6976a43724a88f42b482a/numpy-2.5.0rc1.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-08-20T06:38:08,566 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/e7/05/3d27272d30698dc0ecb7fdfaa41ad70303b444f81722bb99bce1d818638a/numpy-2.5.0.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-08-20T06:38:08,575 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/22/fd/89965aa4ac08c74998539fcbf24fa3540f3e15237fbeb6bcf9c908f4aade/numpy-2.5.1.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-08-20T06:38:08,588 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/9a/80/db0b4559e57ec36362bedbb05530a87fafbcb6067708c946967a41d449e7/numpy-2.5.2.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-08-20T06:38:08,906 Collecting numpy 2026-08-20T06:38:08,907 Obtaining dependency information for numpy from https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata 2026-08-20T06:38:08,923 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata (6.6 kB) 2026-08-20T06:38:09,158 Collecting wheel 2026-08-20T06:38:09,159 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-08-20T06:38:09,172 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-08-20T06:38:09,502 Collecting vcs-versioning<3,>=2.0.0.dev0 2026-08-20T06:38:09,503 Obtaining dependency information for vcs-versioning<3,>=2.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.3.1-py3-none-any.whl.metadata 2026-08-20T06:38:09,520 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.3.1-py3-none-any.whl.metadata (1.7 kB) 2026-08-20T06:38:09,703 Collecting packaging>=20 2026-08-20T06:38:09,704 Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-08-20T06:38:09,716 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-08-20T06:38:09,985 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl (29 kB) 2026-08-20T06:38:10,768 Using cached https://www.piwheels.org/simple/cython/cython-3.2.9-cp311-cp311-linux_armv7l.whl (11.2 MB) 2026-08-20T06:38:11,399 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-08-20T06:38:11,546 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-08-20T06:38:11,564 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-08-20T06:38:11,594 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.3.1-py3-none-any.whl (114 kB) 2026-08-20T06:38:11,680 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-20T06:38:11,715 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl (29 kB) 2026-08-20T06:38:12,502 Using cached https://www.piwheels.org/simple/cython/cython-3.2.9-cp311-cp311-linux_armv7l.whl (11.2 MB) 2026-08-20T06:38:13,256 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-08-20T06:38:13,456 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-08-20T06:38:13,479 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-08-20T06:38:13,508 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.3.1-py3-none-any.whl (114 kB) 2026-08-20T06:38:13,579 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-20T06:38:16,433 Installing collected packages: setuptools, packaging, numpy, Cython, wheel, vcs-versioning, setuptools-scm 2026-08-20T06:38:27,872 Creating /tmp/pip-build-env-qhbs35qy/overlay/local/bin 2026-08-20T06:38:27,874 changing mode of /tmp/pip-build-env-qhbs35qy/overlay/local/bin/f2py to 755 2026-08-20T06:38:27,876 changing mode of /tmp/pip-build-env-qhbs35qy/overlay/local/bin/numpy-config to 755 2026-08-20T06:38:31,566 changing mode of /tmp/pip-build-env-qhbs35qy/overlay/local/bin/cygdb to 755 2026-08-20T06:38:31,568 changing mode of /tmp/pip-build-env-qhbs35qy/overlay/local/bin/cython to 755 2026-08-20T06:38:31,571 changing mode of /tmp/pip-build-env-qhbs35qy/overlay/local/bin/cythonize to 755 2026-08-20T06:38:31,707 changing mode of /tmp/pip-build-env-qhbs35qy/overlay/local/bin/wheel to 755 2026-08-20T06:38:32,118 changing mode of /tmp/pip-build-env-qhbs35qy/overlay/local/bin/vcs-versioning to 755 2026-08-20T06:38:32,247 changing mode of /tmp/pip-build-env-qhbs35qy/overlay/local/bin/setuptools-scm to 755 2026-08-20T06:38:32,304 Successfully installed Cython-3.2.9 numpy-2.4.6 packaging-26.3 setuptools-84.0.0 setuptools-scm-10.2.1 vcs-versioning-2.3.1 wheel-0.48.0 2026-08-20T06:38:32,829 Installing build dependencies: finished with status 'done' 2026-08-20T06:38:32,835 Getting requirements to build wheel: started 2026-08-20T06:38:32,837 Running command Getting requirements to build wheel 2026-08-20T06:38:39,456 warning: bioscrape/types.pyx:2929:44: the result of using negative indices inside of code sections marked as 'wraparound=False' is undefined 2026-08-20T06:38:55,257 Installing Bioscrape... 2026-08-20T06:38:55,257 Compiling bioscrape/random.pyx because it depends on /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2026-08-20T06:38:55,258 Compiling bioscrape/types.pyx because it depends on /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/limits.pxd. 2026-08-20T06:38:55,258 Compiling bioscrape/simulator.pyx because it depends on /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2026-08-20T06:38:55,259 Compiling bioscrape/inference.pyx because it depends on /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libcpp/__init__.pxd. 2026-08-20T06:38:55,260 [1/4] Cythonizing bioscrape/types.pyx 2026-08-20T06:38:55,260 [2/4] Cythonizing bioscrape/inference.pyx 2026-08-20T06:38:55,261 [3/4] Cythonizing bioscrape/random.pyx 2026-08-20T06:38:55,262 [4/4] Cythonizing bioscrape/simulator.pyx 2026-08-20T06:38:55,519 /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-08-20T06:38:55,520 !! 2026-08-20T06:38:55,521 ******************************************************************************** 2026-08-20T06:38:55,521 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-08-20T06:38:55,523 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-08-20T06:38:55,523 or your builds will no longer be supported. 2026-08-20T06:38:55,525 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-20T06:38:55,525 ******************************************************************************** 2026-08-20T06:38:55,526 !! 2026-08-20T06:38:55,527 corresp(dist, value, root_dir) 2026-08-20T06:38:55,583 /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-20T06:38:55,584 !! 2026-08-20T06:38:55,585 ******************************************************************************** 2026-08-20T06:38:55,585 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-20T06:38:55,586 License :: OSI Approved :: BSD License 2026-08-20T06:38:55,587 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-20T06:38:55,588 ******************************************************************************** 2026-08-20T06:38:55,589 !! 2026-08-20T06:38:55,589 dist._finalize_license_expression() 2026-08-20T06:38:55,591 /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-20T06:38:55,591 !! 2026-08-20T06:38:55,592 ******************************************************************************** 2026-08-20T06:38:55,593 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-20T06:38:55,594 License :: OSI Approved :: BSD License 2026-08-20T06:38:55,595 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-20T06:38:55,596 ******************************************************************************** 2026-08-20T06:38:55,597 !! 2026-08-20T06:38:55,598 self._finalize_license_expression() 2026-08-20T06:38:55,598 Bioscrape Cythonized. 2026-08-20T06:38:55,599 running egg_info 2026-08-20T06:38:55,612 writing Bioscrape.egg-info/PKG-INFO 2026-08-20T06:38:55,617 writing dependency_links to Bioscrape.egg-info/dependency_links.txt 2026-08-20T06:38:55,620 writing requirements to Bioscrape.egg-info/requires.txt 2026-08-20T06:38:55,622 writing top-level names to Bioscrape.egg-info/top_level.txt 2026-08-20T06:38:55,649 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,649 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,650 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,651 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,651 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,652 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,653 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,653 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,654 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,655 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,655 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,655 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,656 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,656 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,657 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,657 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,658 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,658 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,659 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,659 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:55,687 reading manifest template 'MANIFEST.in' 2026-08-20T06:38:55,720 warning: no previously-included files found matching '*.cpp' 2026-08-20T06:38:55,721 adding license file 'LICENSE' 2026-08-20T06:38:55,731 writing manifest file 'Bioscrape.egg-info/SOURCES.txt' 2026-08-20T06:38:57,020 Getting requirements to build wheel: finished with status 'done' 2026-08-20T06:38:57,024 Created temporary directory: /tmp/pip-modern-metadata-mvuiq3jr 2026-08-20T06:38:57,027 Preparing metadata (pyproject.toml): started 2026-08-20T06:38:57,028 Running command Preparing metadata (pyproject.toml) 2026-08-20T06:38:58,902 Installing Bioscrape... 2026-08-20T06:38:59,126 /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-08-20T06:38:59,126 !! 2026-08-20T06:38:59,128 ******************************************************************************** 2026-08-20T06:38:59,128 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-08-20T06:38:59,130 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-08-20T06:38:59,130 or your builds will no longer be supported. 2026-08-20T06:38:59,131 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-20T06:38:59,131 ******************************************************************************** 2026-08-20T06:38:59,132 !! 2026-08-20T06:38:59,133 corresp(dist, value, root_dir) 2026-08-20T06:38:59,181 /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-20T06:38:59,181 !! 2026-08-20T06:38:59,182 ******************************************************************************** 2026-08-20T06:38:59,183 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-20T06:38:59,184 License :: OSI Approved :: BSD License 2026-08-20T06:38:59,185 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-20T06:38:59,185 ******************************************************************************** 2026-08-20T06:38:59,186 !! 2026-08-20T06:38:59,187 dist._finalize_license_expression() 2026-08-20T06:38:59,187 /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-20T06:38:59,188 !! 2026-08-20T06:38:59,189 ******************************************************************************** 2026-08-20T06:38:59,189 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-20T06:38:59,191 License :: OSI Approved :: BSD License 2026-08-20T06:38:59,192 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-20T06:38:59,192 ******************************************************************************** 2026-08-20T06:38:59,193 !! 2026-08-20T06:38:59,194 self._finalize_license_expression() 2026-08-20T06:38:59,198 Bioscrape Cythonized. 2026-08-20T06:38:59,199 running dist_info 2026-08-20T06:38:59,201 creating /tmp/pip-modern-metadata-mvuiq3jr/Bioscrape.egg-info 2026-08-20T06:38:59,214 writing /tmp/pip-modern-metadata-mvuiq3jr/Bioscrape.egg-info/PKG-INFO 2026-08-20T06:38:59,218 writing dependency_links to /tmp/pip-modern-metadata-mvuiq3jr/Bioscrape.egg-info/dependency_links.txt 2026-08-20T06:38:59,221 writing requirements to /tmp/pip-modern-metadata-mvuiq3jr/Bioscrape.egg-info/requires.txt 2026-08-20T06:38:59,222 writing top-level names to /tmp/pip-modern-metadata-mvuiq3jr/Bioscrape.egg-info/top_level.txt 2026-08-20T06:38:59,224 writing manifest file '/tmp/pip-modern-metadata-mvuiq3jr/Bioscrape.egg-info/SOURCES.txt' 2026-08-20T06:38:59,247 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,247 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,248 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,249 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,249 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,250 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,251 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,251 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,252 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,252 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,253 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,253 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,253 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,254 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,255 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,255 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,256 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,256 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,257 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,258 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:38:59,258 reading manifest template 'MANIFEST.in' 2026-08-20T06:38:59,284 warning: no previously-included files found matching '*.cpp' 2026-08-20T06:38:59,284 adding license file 'LICENSE' 2026-08-20T06:38:59,293 writing manifest file '/tmp/pip-modern-metadata-mvuiq3jr/Bioscrape.egg-info/SOURCES.txt' 2026-08-20T06:38:59,295 creating '/tmp/pip-modern-metadata-mvuiq3jr/bioscrape-1.4.1.dist-info' 2026-08-20T06:38:59,529 Preparing metadata (pyproject.toml): finished with status 'done' 2026-08-20T06:38:59,535 Source in /tmp/pip-wheel-gxcc8413/bioscrape_b780cbeca5484f4c80949bac1083e18f has version 1.4.1, which satisfies requirement bioscrape==1.4.1 from https://files.pythonhosted.org/packages/97/ff/d899a6028e8fca0276688b4670c1c1d0db4c6b4d5130d8429e358eea9aca/bioscrape-1.4.1.tar.gz 2026-08-20T06:38:59,536 Removed bioscrape==1.4.1 from https://files.pythonhosted.org/packages/97/ff/d899a6028e8fca0276688b4670c1c1d0db4c6b4d5130d8429e358eea9aca/bioscrape-1.4.1.tar.gz from build tracker '/tmp/pip-build-tracker-cgzi394n' 2026-08-20T06:38:59,542 Created temporary directory: /tmp/pip-unpack-sqf7z81c 2026-08-20T06:38:59,543 Building wheels for collected packages: bioscrape 2026-08-20T06:38:59,548 Created temporary directory: /tmp/pip-wheel-cqich8pc 2026-08-20T06:38:59,548 Destination directory: /tmp/pip-wheel-cqich8pc 2026-08-20T06:38:59,551 Building wheel for bioscrape (pyproject.toml): started 2026-08-20T06:38:59,552 Running command Building wheel for bioscrape (pyproject.toml) 2026-08-20T06:39:01,522 Installing Bioscrape... 2026-08-20T06:39:01,739 /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-08-20T06:39:01,740 !! 2026-08-20T06:39:01,741 ******************************************************************************** 2026-08-20T06:39:01,741 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-08-20T06:39:01,742 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-08-20T06:39:01,743 or your builds will no longer be supported. 2026-08-20T06:39:01,744 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-20T06:39:01,744 ******************************************************************************** 2026-08-20T06:39:01,745 !! 2026-08-20T06:39:01,746 corresp(dist, value, root_dir) 2026-08-20T06:39:01,791 /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-20T06:39:01,792 !! 2026-08-20T06:39:01,793 ******************************************************************************** 2026-08-20T06:39:01,794 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-20T06:39:01,795 License :: OSI Approved :: BSD License 2026-08-20T06:39:01,796 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-20T06:39:01,796 ******************************************************************************** 2026-08-20T06:39:01,797 !! 2026-08-20T06:39:01,798 dist._finalize_license_expression() 2026-08-20T06:39:01,798 /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-20T06:39:01,799 !! 2026-08-20T06:39:01,800 ******************************************************************************** 2026-08-20T06:39:01,801 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-20T06:39:01,802 License :: OSI Approved :: BSD License 2026-08-20T06:39:01,803 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-20T06:39:01,803 ******************************************************************************** 2026-08-20T06:39:01,805 !! 2026-08-20T06:39:01,805 self._finalize_license_expression() 2026-08-20T06:39:01,806 Bioscrape Cythonized. 2026-08-20T06:39:01,806 running bdist_wheel 2026-08-20T06:39:01,830 running build 2026-08-20T06:39:01,830 running build_py 2026-08-20T06:39:01,832 creating build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:01,834 copying bioscrape/__init__.py -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:01,836 copying bioscrape/inference_setup.py -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:01,840 copying bioscrape/analysis.py -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:01,842 copying bioscrape/pid_interfaces.py -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:01,845 copying bioscrape/sbmlutil.py -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:01,848 running egg_info 2026-08-20T06:39:01,861 writing Bioscrape.egg-info/PKG-INFO 2026-08-20T06:39:01,865 writing dependency_links to Bioscrape.egg-info/dependency_links.txt 2026-08-20T06:39:01,866 writing requirements to Bioscrape.egg-info/requires.txt 2026-08-20T06:39:01,867 writing top-level names to Bioscrape.egg-info/top_level.txt 2026-08-20T06:39:01,878 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,879 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,879 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,880 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,880 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,881 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,881 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,882 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,883 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,883 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,884 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,884 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,884 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,885 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,885 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,886 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,886 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,887 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,887 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,888 dependency /tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-08-20T06:39:01,907 reading manifest template 'MANIFEST.in' 2026-08-20T06:39:01,934 warning: no previously-included files found matching '*.cpp' 2026-08-20T06:39:01,934 adding license file 'LICENSE' 2026-08-20T06:39:01,943 writing manifest file 'Bioscrape.egg-info/SOURCES.txt' 2026-08-20T06:39:01,951 copying bioscrape/inference.cpp -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,006 copying bioscrape/inference.pxd -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,008 copying bioscrape/inference.pyx -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,011 copying bioscrape/random.cpp -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,023 copying bioscrape/random.pxd -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,025 copying bioscrape/random.pyx -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,027 copying bioscrape/simulator.cpp -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,099 copying bioscrape/simulator.pxd -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,101 copying bioscrape/simulator.pyx -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,105 copying bioscrape/types.cpp -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,185 copying bioscrape/types.pxd -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,188 copying bioscrape/types.pyx -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,193 copying bioscrape/vector.pxd -> build/lib.linux-armv7l-cpython-311/bioscrape 2026-08-20T06:39:02,196 running build_ext 2026-08-20T06:39:02,207 building 'bioscrape.random' extension 2026-08-20T06:39:02,209 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I. -I/usr/include/python3.11 -c bioscrape/random.cpp -o build/temp.linux-armv7l-cpython-311/bioscrape/random.o 2026-08-20T06:39:04,413 bioscrape/random.cpp: In function ‘long long unsigned int __pyx_f_9bioscrape_6random_genrand64()’: 2026-08-20T06:39:04,414 bioscrape/random.cpp:4943:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-08-20T06:39:04,414 4943 | for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { 2026-08-20T06:39:04,415 | ~~~~~~~~~~^~~~~~~~~~~ 2026-08-20T06:39:11,619 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/bioscrape/random.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/bioscrape/random.cpython-311-arm-linux-gnueabihf.so 2026-08-20T06:39:11,813 building 'bioscrape.types' extension 2026-08-20T06:39:11,814 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I. -I/usr/include/python3.11 -c bioscrape/types.cpp -o build/temp.linux-armv7l-cpython-311/bioscrape/types.o 2026-08-20T06:39:18,330 bioscrape/types.cpp: In function ‘PyObject* __pyx_pf_9bioscrape_5types_7Schnitz_20get_sub_lineage(__pyx_obj_9bioscrape_5types_Schnitz*, PyObject*)’: 2026-08-20T06:39:18,331 bioscrape/types.cpp:74594:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2026-08-20T06:39:18,332 74594 | __pyx_t_1 = (__pyx_v_index < __pyx_t_6); 2026-08-20T06:39:18,332 | ~~~~~~~~~~~~~~^~~~~~~~~~~ 2026-08-20T06:39:18,336 bioscrape/types.cpp:74697:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2026-08-20T06:39:18,336 74697 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2026-08-20T06:39:18,337 | ~~~~~~~~~~^~~~~~~~~~~ 2026-08-20T06:41:17,711 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/bioscrape/types.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/bioscrape/types.cpython-311-arm-linux-gnueabihf.so 2026-08-20T06:41:18,213 building 'bioscrape.simulator' extension 2026-08-20T06:41:18,214 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I. -I/usr/include/python3.11 -c bioscrape/simulator.cpp -o build/temp.linux-armv7l-cpython-311/bioscrape/simulator.o 2026-08-20T06:41:23,239 bioscrape/simulator.cpp: In function ‘PyObject* __pyx_pf_9bioscrape_9simulator_22DeterministicSimulator_8_helper_simulate(__pyx_obj_9bioscrape_9simulator_DeterministicSimulator*, __pyx_obj_9bioscrape_9simulator_CSimInterface*, PyArrayObject*, PyObject*)’: 2026-08-20T06:41:23,240 bioscrape/simulator.cpp:59206:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘npy_intp’ {aka ‘int’} [-Wsign-compare] 2026-08-20T06:41:23,241 59206 | for (__pyx_t_17 = 0; __pyx_t_17 < __pyx_t_19; __pyx_t_17+=1) { 2026-08-20T06:41:23,242 | ~~~~~~~~~~~^~~~~~~~~~~~ 2026-08-20T06:42:22,528 bioscrape/simulator.cpp: In function ‘PyObject* __pyx_pw_9bioscrape_9simulator_22DeterministicSimulator_9_helper_simulate(PyObject*, PyObject* const*, Py_ssize_t, PyObject*)’: 2026-08-20T06:42:22,529 bioscrape/simulator.cpp:58479:21: warning: ‘__pyx_pybuffernd_results.__Pyx_LocalBuf_ND::diminfo[0].__Pyx_Buf_DimInfo::strides’ may be used uninitialized [-Wmaybe-uninitialized] 2026-08-20T06:42:22,530 58479 | __Pyx_LocalBuf_ND __pyx_pybuffernd_results; 2026-08-20T06:42:22,531 | ^~~~~~~~~~~~~~~~~~~~~~~~ 2026-08-20T06:42:48,731 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/bioscrape/simulator.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/bioscrape/simulator.cpython-311-arm-linux-gnueabihf.so 2026-08-20T06:42:49,192 building 'bioscrape.inference' extension 2026-08-20T06:42:49,194 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-qhbs35qy/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I. -I/usr/include/python3.11 -c bioscrape/inference.cpp -o build/temp.linux-armv7l-cpython-311/bioscrape/inference.o 2026-08-20T06:42:52,261 bioscrape/inference.cpp: In function ‘PyObject* __pyx_pf_9bioscrape_9inference_8BulkData_set_data(__pyx_obj_9bioscrape_9inference_BulkData*, PyArrayObject*, PyArrayObject*, PyObject*, unsigned int)’: 2026-08-20T06:42:52,262 bioscrape/inference.cpp:26956:30: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2026-08-20T06:42:52,263 26956 | __pyx_t_2 = (__pyx_t_3 == __pyx_v_N); 2026-08-20T06:42:52,263 | ~~~~~~~~~~^~~~~~~~~~~~ 2026-08-20T06:42:52,352 bioscrape/inference.cpp: In function ‘PyObject* __pyx_pf_9bioscrape_9inference_8FlowData_set_data(__pyx_obj_9bioscrape_9inference_FlowData*, PyArrayObject*, PyArrayObject*, PyObject*, unsigned int)’: 2026-08-20T06:42:52,353 bioscrape/inference.cpp:28333:80: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2026-08-20T06:42:52,354 28333 | __pyx_t_1 = ((__pyx_f_5numpy_7ndarray_5shape_shape(__pyx_v_measurements)[1]) != __pyx_v_self->__pyx_base.M); 2026-08-20T06:42:52,354 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-08-20T06:42:52,398 bioscrape/inference.cpp: In function ‘PyObject* __pyx_pf_9bioscrape_9inference_22StochasticTrajectories_set_data(__pyx_obj_9bioscrape_9inference_StochasticTrajectories*, PyArrayObject*, PyArrayObject*, PyObject*, unsigned int)’: 2026-08-20T06:42:52,399 bioscrape/inference.cpp:29142:80: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2026-08-20T06:42:52,400 29142 | __pyx_t_3 = ((__pyx_f_5numpy_7ndarray_5shape_shape(__pyx_v_measurements)[2]) == __pyx_v_self->__pyx_base.M); 2026-08-20T06:42:52,400 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-08-20T06:42:52,407 bioscrape/inference.cpp:29261:78: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2026-08-20T06:42:52,407 29261 | __pyx_t_3 = ((__pyx_f_5numpy_7ndarray_5shape_shape(__pyx_v_timepoints)[0]) == __pyx_v_self->nT); 2026-08-20T06:42:52,408 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ 2026-08-20T06:42:52,409 bioscrape/inference.cpp:29303:79: warning: comparison of integer expressions of different signedness: ‘npy_intp’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2026-08-20T06:42:52,410 29303 | __pyx_t_11 = ((__pyx_f_5numpy_7ndarray_5shape_shape(__pyx_v_timepoints)[0]) == __pyx_v_self->__pyx_base.N); 2026-08-20T06:42:52,410 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-08-20T06:42:52,411 bioscrape/inference.cpp:29309:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘npy_intp’ {aka ‘int’} [-Wsign-compare] 2026-08-20T06:42:52,412 29309 | __pyx_t_11 = (__pyx_v_self->nT == (__pyx_f_5numpy_7ndarray_5shape_shape(__pyx_v_timepoints)[1])); 2026-08-20T06:42:52,413 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-08-20T06:42:52,701 bioscrape/inference.cpp: In function ‘double __pyx_f_9bioscrape_9inference_23DeterministicLikelihood_get_log_likelihood(__pyx_obj_9bioscrape_9inference_DeterministicLikelihood*)’: 2026-08-20T06:42:52,702 bioscrape/inference.cpp:34975:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2026-08-20T06:42:52,703 34975 | for (__pyx_t_18 = 0; __pyx_t_18 < __pyx_t_17; __pyx_t_18+=1) { 2026-08-20T06:42:52,703 | ~~~~~~~~~~~^~~~~~~~~~~~ 2026-08-20T06:43:38,910 arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -shared -Wl,-O1 -Wl,-Bsymbolic-functions build/temp.linux-armv7l-cpython-311/bioscrape/inference.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/bioscrape/inference.cpython-311-arm-linux-gnueabihf.so 2026-08-20T06:43:39,200 installing to build/bdist.linux-armv7l/wheel 2026-08-20T06:43:39,201 running install 2026-08-20T06:43:39,223 running install_lib 2026-08-20T06:43:39,232 creating build/bdist.linux-armv7l/wheel 2026-08-20T06:43:39,235 creating build/bdist.linux-armv7l/wheel/bioscrape 2026-08-20T06:43:39,236 copying build/lib.linux-armv7l-cpython-311/bioscrape/simulator.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,303 copying build/lib.linux-armv7l-cpython-311/bioscrape/vector.pxd -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,305 copying build/lib.linux-armv7l-cpython-311/bioscrape/__init__.py -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,307 copying build/lib.linux-armv7l-cpython-311/bioscrape/random.cpp -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,319 copying build/lib.linux-armv7l-cpython-311/bioscrape/inference.cpp -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,363 copying build/lib.linux-armv7l-cpython-311/bioscrape/simulator.cpp -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,433 copying build/lib.linux-armv7l-cpython-311/bioscrape/inference_setup.py -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,436 copying build/lib.linux-armv7l-cpython-311/bioscrape/random.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,444 copying build/lib.linux-armv7l-cpython-311/bioscrape/types.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,529 copying build/lib.linux-armv7l-cpython-311/bioscrape/types.pxd -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,532 copying build/lib.linux-armv7l-cpython-311/bioscrape/inference.pyx -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,535 copying build/lib.linux-armv7l-cpython-311/bioscrape/inference.pxd -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,537 copying build/lib.linux-armv7l-cpython-311/bioscrape/analysis.py -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,539 copying build/lib.linux-armv7l-cpython-311/bioscrape/inference.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,578 copying build/lib.linux-armv7l-cpython-311/bioscrape/simulator.pxd -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,581 copying build/lib.linux-armv7l-cpython-311/bioscrape/pid_interfaces.py -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,584 copying build/lib.linux-armv7l-cpython-311/bioscrape/random.pyx -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,586 copying build/lib.linux-armv7l-cpython-311/bioscrape/types.cpp -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,671 copying build/lib.linux-armv7l-cpython-311/bioscrape/random.pxd -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,673 copying build/lib.linux-armv7l-cpython-311/bioscrape/types.pyx -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,678 copying build/lib.linux-armv7l-cpython-311/bioscrape/simulator.pyx -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,682 copying build/lib.linux-armv7l-cpython-311/bioscrape/sbmlutil.py -> build/bdist.linux-armv7l/wheel/./bioscrape 2026-08-20T06:43:39,685 running install_egg_info 2026-08-20T06:43:39,696 Copying Bioscrape.egg-info to build/bdist.linux-armv7l/wheel/./Bioscrape-1.4.1-py3.11.egg-info 2026-08-20T06:43:39,715 running install_scripts 2026-08-20T06:43:39,736 creating build/bdist.linux-armv7l/wheel/bioscrape-1.4.1.dist-info/WHEEL 2026-08-20T06:43:39,739 creating '/tmp/pip-wheel-cqich8pc/.tmp-k6ex60te/bioscrape-1.4.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-08-20T06:43:39,742 adding 'bioscrape/__init__.py' 2026-08-20T06:43:39,744 adding 'bioscrape/analysis.py' 2026-08-20T06:43:39,944 adding 'bioscrape/inference.cpp' 2026-08-20T06:43:40,434 adding 'bioscrape/inference.cpython-311-arm-linux-gnueabihf.so' 2026-08-20T06:43:40,450 adding 'bioscrape/inference.pxd' 2026-08-20T06:43:40,456 adding 'bioscrape/inference.pyx' 2026-08-20T06:43:40,461 adding 'bioscrape/inference_setup.py' 2026-08-20T06:43:40,465 adding 'bioscrape/pid_interfaces.py' 2026-08-20T06:43:40,514 adding 'bioscrape/random.cpp' 2026-08-20T06:43:40,605 adding 'bioscrape/random.cpython-311-arm-linux-gnueabihf.so' 2026-08-20T06:43:40,609 adding 'bioscrape/random.pxd' 2026-08-20T06:43:40,610 adding 'bioscrape/random.pyx' 2026-08-20T06:43:40,617 adding 'bioscrape/sbmlutil.py' 2026-08-20T06:43:40,919 adding 'bioscrape/simulator.cpp' 2026-08-20T06:43:41,736 adding 'bioscrape/simulator.cpython-311-arm-linux-gnueabihf.so' 2026-08-20T06:43:41,765 adding 'bioscrape/simulator.pxd' 2026-08-20T06:43:41,777 adding 'bioscrape/simulator.pyx' 2026-08-20T06:43:42,120 adding 'bioscrape/types.cpp' 2026-08-20T06:43:43,134 adding 'bioscrape/types.cpython-311-arm-linux-gnueabihf.so' 2026-08-20T06:43:43,171 adding 'bioscrape/types.pxd' 2026-08-20T06:43:43,188 adding 'bioscrape/types.pyx' 2026-08-20T06:43:43,190 adding 'bioscrape/vector.pxd' 2026-08-20T06:43:43,193 adding 'bioscrape-1.4.1.dist-info/licenses/LICENSE' 2026-08-20T06:43:43,194 adding 'bioscrape-1.4.1.dist-info/METADATA' 2026-08-20T06:43:43,196 adding 'bioscrape-1.4.1.dist-info/WHEEL' 2026-08-20T06:43:43,196 adding 'bioscrape-1.4.1.dist-info/top_level.txt' 2026-08-20T06:43:43,197 adding 'bioscrape-1.4.1.dist-info/RECORD' 2026-08-20T06:43:43,268 removing build/bdist.linux-armv7l/wheel 2026-08-20T06:43:43,485 Building wheel for bioscrape (pyproject.toml): finished with status 'done' 2026-08-20T06:43:43,609 Created wheel for bioscrape: filename=bioscrape-1.4.1-cp311-cp311-linux_armv7l.whl size=6412236 sha256=7504bcb177187f55991705a8606bf37f959a9071973826b91f465c1b01f41c91 2026-08-20T06:43:43,610 Stored in directory: /tmp/pip-ephem-wheel-cache-51l653zw/wheels/fd/eb/50/67790219def5529cf3d9a48ec01d1cd1f10b49cfab4beba444 2026-08-20T06:43:43,625 Successfully built bioscrape 2026-08-20T06:43:43,780 Removed build tracker: '/tmp/pip-build-tracker-cgzi394n'