2026-08-22T02:17:10,159 Created temporary directory: /tmp/pip-ephem-wheel-cache-dxj_xfov 2026-08-22T02:17:10,161 Created temporary directory: /tmp/pip-build-tracker-3_zldfcn 2026-08-22T02:17:10,161 Initialized build tracking at /tmp/pip-build-tracker-3_zldfcn 2026-08-22T02:17:10,162 Created build tracker: /tmp/pip-build-tracker-3_zldfcn 2026-08-22T02:17:10,162 Entered build tracker: /tmp/pip-build-tracker-3_zldfcn 2026-08-22T02:17:10,163 Created temporary directory: /tmp/pip-wheel-02h7wp2k 2026-08-22T02:17:10,166 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-22T02:17:10,169 Created temporary directory: /tmp/pip-ephem-wheel-cache-lowya879 2026-08-22T02:17:10,193 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-22T02:17:10,197 2 location(s) to search for versions of papyrus-scripts: 2026-08-22T02:17:10,197 * https://pypi.org/simple/papyrus-scripts/ 2026-08-22T02:17:10,197 * https://www.piwheels.org/simple/papyrus-scripts/ 2026-08-22T02:17:10,197 Fetching project page and analyzing links: https://pypi.org/simple/papyrus-scripts/ 2026-08-22T02:17:10,198 Getting page https://pypi.org/simple/papyrus-scripts/ 2026-08-22T02:17:10,200 Found index url https://pypi.org/simple 2026-08-22T02:17:10,425 Fetched page https://pypi.org/simple/papyrus-scripts/ as application/vnd.pypi.simple.v1+json 2026-08-22T02:17:10,430 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/b5/19/95564c6182f53424b98a9b226fad2732a775e1b03240f98026d1f4a31c09/papyrus_scripts-1.0.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,431 Found link https://files.pythonhosted.org/packages/a8/fa/c9965193e37d2e8d7d546604d0995edc8d5117401823c1db7f86b4039889/papyrus_scripts-1.0.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.0 2026-08-22T02:17:10,432 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/40/cb/13f41607756a77e4cd805fa9b08a8bc3ee15e5db1a8c072793d70b9af909/papyrus_scripts-1.0.1-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,432 Found link https://files.pythonhosted.org/packages/9e/74/fbeebe2236ef7fac6e618ef9340b1d0bd356968d8035d4e4c8d3518b2aef/papyrus_scripts-1.0.1.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.1 2026-08-22T02:17:10,433 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/37/e6/ce2206c4a5147ad1ce46002653ebea21ec6a11d1e14c8efb8ab1ce937503/papyrus_scripts-1.0.2-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,434 Found link https://files.pythonhosted.org/packages/6b/54/6ae4f489632303221c4e7e55bf7277cd1c8bbc6061531e898dcee8383ada/papyrus_scripts-1.0.2.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.2 2026-08-22T02:17:10,434 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/8f/3b/fefbe990c401b882b359c3827b6b8df211ee4722139c16133308b00515e4/papyrus_scripts-1.0.3-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,435 Found link https://files.pythonhosted.org/packages/c0/be/ef1fc8c69ba39ecf9d4a6d42ffcf25f07a7f8912fe1c15f1e77b40be8f90/papyrus_scripts-1.0.3.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.3 2026-08-22T02:17:10,436 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/7e/e4/88b6ad50b83e4845adb2ff52aeb8cfcfe5889546f64e73524d12b014f2cb/papyrus_scripts-2.0.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,436 Found link https://files.pythonhosted.org/packages/23/25/8dcbf7c4f30f10570ca5725953c1cf575520a085d4261646f77e65b113ea/papyrus_scripts-2.0.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.0.0 2026-08-22T02:17:10,437 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/18/ea/22077156d9a642d92bb910a325a2771ec1276a64a8180dd22d4dbcd48120/papyrus_scripts-2.0.0.post1-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,438 Found link https://files.pythonhosted.org/packages/fa/b5/1a7c04f6af8915d8e54aa79ce50fff0371564b71e24d1c01a8634e12403e/papyrus_scripts-2.0.0.post1.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.0.0.post1 2026-08-22T02:17:10,438 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/38/90/97998d0619abeb876dc3e116cc5ef77ce7af1b6f90ece79c210736ab251b/papyrus_scripts-2.1.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,439 Found link https://files.pythonhosted.org/packages/ce/ac/2a01174cfac28e03cbd72dfa18ba99b46f4141e0065b141ec4b5c05e4961/papyrus_scripts-2.1.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.1.0 2026-08-22T02:17:10,439 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/5f/64/e4f6cfa478c47ad5556dd73cc3b0f410517711071ff29107907013a6ba3e/papyrus_scripts-2.1.1-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,440 Found link https://files.pythonhosted.org/packages/1e/51/7384b55851506dee3ef93465a5e7150b29ec51102cdf997ea3c711217764/papyrus_scripts-2.1.1.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.1.1 2026-08-22T02:17:10,440 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/f5/8b/5fabcdf896025c5adc78506ead7474acfa4c948ae443da30e31849c8a88d/papyrus_scripts-2.1.2-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,441 Found link https://files.pythonhosted.org/packages/ee/f0/19be885063770d063eb2df3ee7a15ada9aaa5916b14746fff2dac24b0c62/papyrus_scripts-2.1.2.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.1.2 2026-08-22T02:17:10,442 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/ed/7a/d8d446a8191add3d5998edb3341a653ca93b32f5bc3b0df5f051aa815ee5/papyrus_scripts-2.1.3-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,442 Found link https://files.pythonhosted.org/packages/6e/90/4390e6b155f51843412887b4667b0f8a1d537ec7eb0b710497c47d31b401/papyrus_scripts-2.1.3.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.1.3 2026-08-22T02:17:10,443 Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/00/e4/e6f7412accd0bca62641f7e0d68b7c6e03bbccfe19bfa9b5e231f47757f7/papyrus_scripts-3.0.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) (requires-python:>=3.11) 2026-08-22T02:17:10,444 Found link https://files.pythonhosted.org/packages/6c/e1/99006ddec9abd44d8dfb581e2ddf9d25e309c9e55c916487936a1c56f04b/papyrus_scripts-3.0.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/) (requires-python:>=3.11), version: 3.0.0 2026-08-22T02:17:10,445 Fetching project page and analyzing links: https://www.piwheels.org/simple/papyrus-scripts/ 2026-08-22T02:17:10,445 Getting page https://www.piwheels.org/simple/papyrus-scripts/ 2026-08-22T02:17:10,447 Found index url https://www.piwheels.org/simple 2026-08-22T02:17:10,669 Fetched page https://www.piwheels.org/simple/papyrus-scripts/ as text/html 2026-08-22T02:17:10,673 Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.1.3-py3-none-any.whl#sha256=facb0bf542c28bafbed6e7de01dd9044e837f9aeddbfa91e67d984e4517ee58b (from https://www.piwheels.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,674 Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.1.2-py3-none-any.whl#sha256=58dfcd81c716271d84568b04aaf3795a4a3b7f5a6bf886b8788af8faff86bd45 (from https://www.piwheels.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,674 Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.1.1-py3-none-any.whl#sha256=54ed2dabf00803fd4f22e085f19c7610741c6da12a5c9ad623f39c66f962250c (from https://www.piwheels.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,675 Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.1.0-py3-none-any.whl#sha256=387843ac43cc3dec52b7f4c7450de103400a849c9e9db4e2ae9f6d22edaf1164 (from https://www.piwheels.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,676 Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.0.0.post1-py3-none-any.whl#sha256=8c3d99b9e12fddc57fc9a8ae2fa2a6cb7ff056ea17e04f5f40498bc033bad65b (from https://www.piwheels.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,676 Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.0.0-py3-none-any.whl#sha256=59b7c1af7bcffad2a4864853071d1d2023f12d66c2d94c77307da77d571736f3 (from https://www.piwheels.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,676 Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.3-py3-none-any.whl#sha256=d8726fad87c54033c1ccfb24793cfe931514385e31f985decbd4db0359161f21 (from https://www.piwheels.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,677 Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.2-py3-none-any.whl#sha256=0c5c255057debeeb39bc7754d5580f5017739a5511dfc5c8a0a4cea4381a216b (from https://www.piwheels.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,677 Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.1-py3-none-any.whl#sha256=a9a05d11a4dab2af708d68a7d80f14bde89175c2655db1d624fecddf5e188e07 (from https://www.piwheels.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,678 Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.0-py3-none-any.whl#sha256=0547595805abc574ec34f214d521dcf762c43e1c7da898f1bb95a2c6eda24460 (from https://www.piwheels.org/simple/papyrus-scripts/) 2026-08-22T02:17:10,679 Skipping link: not a file: https://www.piwheels.org/simple/papyrus-scripts/ 2026-08-22T02:17:10,679 Skipping link: not a file: https://pypi.org/simple/papyrus-scripts/ 2026-08-22T02:17:10,699 Given no hashes to check 1 links for project 'papyrus-scripts': discarding no candidates 2026-08-22T02:17:10,717 Collecting papyrus-scripts==3.0.0 2026-08-22T02:17:10,719 Created temporary directory: /tmp/pip-unpack-hb7xz82e 2026-08-22T02:17:10,871 Downloading papyrus_scripts-3.0.0.tar.gz (245 kB) 2026-08-22T02:17:11,076 Added papyrus-scripts==3.0.0 from https://files.pythonhosted.org/packages/6c/e1/99006ddec9abd44d8dfb581e2ddf9d25e309c9e55c916487936a1c56f04b/papyrus_scripts-3.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-3_zldfcn' 2026-08-22T02:17:11,083 Created temporary directory: /tmp/pip-build-env-ww_68o3_ 2026-08-22T02:17:11,088 Installing build dependencies: started 2026-08-22T02:17:11,089 Running command pip subprocess to install build dependencies 2026-08-22T02:17:12,225 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-08-22T02:17:12,686 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-22T02:17:12,710 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-22T02:17:14,508 Collecting setuptools>=77.0.0 2026-08-22T02:17:14,509 Obtaining dependency information for setuptools>=77.0.0 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-08-22T02:17:14,522 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-08-22T02:17:14,773 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-22T02:17:14,855 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-22T02:17:17,609 Installing collected packages: setuptools 2026-08-22T02:17:19,940 Successfully installed setuptools-84.0.0 2026-08-22T02:17:20,206 Installing build dependencies: finished with status 'done' 2026-08-22T02:17:20,214 Getting requirements to build wheel: started 2026-08-22T02:17:20,215 Running command Getting requirements to build wheel 2026-08-22T02:17:20,938 running egg_info 2026-08-22T02:17:20,944 writing src/papyrus_scripts.egg-info/PKG-INFO 2026-08-22T02:17:20,950 writing dependency_links to src/papyrus_scripts.egg-info/dependency_links.txt 2026-08-22T02:17:20,952 writing entry points to src/papyrus_scripts.egg-info/entry_points.txt 2026-08-22T02:17:20,955 writing requirements to src/papyrus_scripts.egg-info/requires.txt 2026-08-22T02:17:20,957 writing top-level names to src/papyrus_scripts.egg-info/top_level.txt 2026-08-22T02:17:20,980 reading manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt' 2026-08-22T02:17:20,984 adding license file 'LICENSE' 2026-08-22T02:17:20,988 writing manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt' 2026-08-22T02:17:21,086 Getting requirements to build wheel: finished with status 'done' 2026-08-22T02:17:21,089 Created temporary directory: /tmp/pip-modern-metadata-sm_revt_ 2026-08-22T02:17:21,092 Preparing metadata (pyproject.toml): started 2026-08-22T02:17:21,093 Running command Preparing metadata (pyproject.toml) 2026-08-22T02:17:21,783 running dist_info 2026-08-22T02:17:21,794 creating /tmp/pip-modern-metadata-sm_revt_/papyrus_scripts.egg-info 2026-08-22T02:17:21,795 writing /tmp/pip-modern-metadata-sm_revt_/papyrus_scripts.egg-info/PKG-INFO 2026-08-22T02:17:21,801 writing dependency_links to /tmp/pip-modern-metadata-sm_revt_/papyrus_scripts.egg-info/dependency_links.txt 2026-08-22T02:17:21,803 writing entry points to /tmp/pip-modern-metadata-sm_revt_/papyrus_scripts.egg-info/entry_points.txt 2026-08-22T02:17:21,806 writing requirements to /tmp/pip-modern-metadata-sm_revt_/papyrus_scripts.egg-info/requires.txt 2026-08-22T02:17:21,807 writing top-level names to /tmp/pip-modern-metadata-sm_revt_/papyrus_scripts.egg-info/top_level.txt 2026-08-22T02:17:21,809 writing manifest file '/tmp/pip-modern-metadata-sm_revt_/papyrus_scripts.egg-info/SOURCES.txt' 2026-08-22T02:17:21,829 reading manifest file '/tmp/pip-modern-metadata-sm_revt_/papyrus_scripts.egg-info/SOURCES.txt' 2026-08-22T02:17:21,831 adding license file 'LICENSE' 2026-08-22T02:17:21,835 writing manifest file '/tmp/pip-modern-metadata-sm_revt_/papyrus_scripts.egg-info/SOURCES.txt' 2026-08-22T02:17:21,836 creating '/tmp/pip-modern-metadata-sm_revt_/papyrus_scripts-3.0.0.dist-info' 2026-08-22T02:17:21,961 Preparing metadata (pyproject.toml): finished with status 'done' 2026-08-22T02:17:21,966 Source in /tmp/pip-wheel-02h7wp2k/papyrus-scripts_016d680dfd2d4177b3224f806febed19 has version 3.0.0, which satisfies requirement papyrus-scripts==3.0.0 from https://files.pythonhosted.org/packages/6c/e1/99006ddec9abd44d8dfb581e2ddf9d25e309c9e55c916487936a1c56f04b/papyrus_scripts-3.0.0.tar.gz 2026-08-22T02:17:21,967 Removed papyrus-scripts==3.0.0 from https://files.pythonhosted.org/packages/6c/e1/99006ddec9abd44d8dfb581e2ddf9d25e309c9e55c916487936a1c56f04b/papyrus_scripts-3.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-3_zldfcn' 2026-08-22T02:17:21,974 Created temporary directory: /tmp/pip-unpack-2r3thd53 2026-08-22T02:17:21,975 Building wheels for collected packages: papyrus-scripts 2026-08-22T02:17:21,980 Created temporary directory: /tmp/pip-wheel-7d1y4fsl 2026-08-22T02:17:21,981 Destination directory: /tmp/pip-wheel-7d1y4fsl 2026-08-22T02:17:21,983 Building wheel for papyrus-scripts (pyproject.toml): started 2026-08-22T02:17:21,984 Running command Building wheel for papyrus-scripts (pyproject.toml) 2026-08-22T02:17:22,626 running bdist_wheel 2026-08-22T02:17:22,643 running build 2026-08-22T02:17:22,644 running build_py 2026-08-22T02:17:22,650 creating build/lib/papyrus_scripts 2026-08-22T02:17:22,653 copying src/papyrus_scripts/oop.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,656 copying src/papyrus_scripts/matchRCSB.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,659 copying src/papyrus_scripts/neuralnet.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,662 copying src/papyrus_scripts/preprocess.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,665 copying src/papyrus_scripts/__init__.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,666 copying src/papyrus_scripts/__main__.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,668 copying src/papyrus_scripts/download.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,672 copying src/papyrus_scripts/fingerprint.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,674 copying src/papyrus_scripts/reader.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,677 copying src/papyrus_scripts/cli.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,680 copying src/papyrus_scripts/subsim_search.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,684 copying src/papyrus_scripts/modelling.py -> build/lib/papyrus_scripts 2026-08-22T02:17:22,688 creating build/lib/papyrus_scripts/utils 2026-08-22T02:17:22,689 copying src/papyrus_scripts/utils/mol_reader.py -> build/lib/papyrus_scripts/utils 2026-08-22T02:17:22,692 copying src/papyrus_scripts/utils/__init__.py -> build/lib/papyrus_scripts/utils 2026-08-22T02:17:22,694 copying src/papyrus_scripts/utils/UniprotMatch.py -> build/lib/papyrus_scripts/utils 2026-08-22T02:17:22,696 copying src/papyrus_scripts/utils/IO.py -> build/lib/papyrus_scripts/utils 2026-08-22T02:17:22,699 running egg_info 2026-08-22T02:17:22,709 writing src/papyrus_scripts.egg-info/PKG-INFO 2026-08-22T02:17:22,715 writing dependency_links to src/papyrus_scripts.egg-info/dependency_links.txt 2026-08-22T02:17:22,716 writing entry points to src/papyrus_scripts.egg-info/entry_points.txt 2026-08-22T02:17:22,719 writing requirements to src/papyrus_scripts.egg-info/requires.txt 2026-08-22T02:17:22,720 writing top-level names to src/papyrus_scripts.egg-info/top_level.txt 2026-08-22T02:17:22,733 reading manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt' 2026-08-22T02:17:22,737 adding license file 'LICENSE' 2026-08-22T02:17:22,741 writing manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt' 2026-08-22T02:17:22,745 copying src/papyrus_scripts/utils/aliases.json -> build/lib/papyrus_scripts/utils 2026-08-22T02:17:22,747 copying src/papyrus_scripts/utils/links.json -> build/lib/papyrus_scripts/utils 2026-08-22T02:17:22,761 installing to build/bdist.linux-armv7l/wheel 2026-08-22T02:17:22,762 running install 2026-08-22T02:17:22,784 running install_lib 2026-08-22T02:17:22,790 creating build/bdist.linux-armv7l/wheel 2026-08-22T02:17:22,792 creating build/bdist.linux-armv7l/wheel/papyrus_scripts 2026-08-22T02:17:22,794 copying build/lib/papyrus_scripts/oop.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,797 copying build/lib/papyrus_scripts/matchRCSB.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,800 copying build/lib/papyrus_scripts/neuralnet.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,803 creating build/bdist.linux-armv7l/wheel/papyrus_scripts/utils 2026-08-22T02:17:22,805 copying build/lib/papyrus_scripts/utils/mol_reader.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2026-08-22T02:17:22,808 copying build/lib/papyrus_scripts/utils/aliases.json -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2026-08-22T02:17:22,810 copying build/lib/papyrus_scripts/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2026-08-22T02:17:22,812 copying build/lib/papyrus_scripts/utils/UniprotMatch.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2026-08-22T02:17:22,814 copying build/lib/papyrus_scripts/utils/IO.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2026-08-22T02:17:22,817 copying build/lib/papyrus_scripts/utils/links.json -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils 2026-08-22T02:17:22,821 copying build/lib/papyrus_scripts/preprocess.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,824 copying build/lib/papyrus_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,826 copying build/lib/papyrus_scripts/__main__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,827 copying build/lib/papyrus_scripts/download.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,831 copying build/lib/papyrus_scripts/fingerprint.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,833 copying build/lib/papyrus_scripts/reader.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,836 copying build/lib/papyrus_scripts/cli.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,839 copying build/lib/papyrus_scripts/subsim_search.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,842 copying build/lib/papyrus_scripts/modelling.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts 2026-08-22T02:17:22,846 running install_egg_info 2026-08-22T02:17:22,850 Copying src/papyrus_scripts.egg-info to build/bdist.linux-armv7l/wheel/./papyrus_scripts-3.0.0-py3.11.egg-info 2026-08-22T02:17:22,863 running install_scripts 2026-08-22T02:17:22,876 creating build/bdist.linux-armv7l/wheel/papyrus_scripts-3.0.0.dist-info/WHEEL 2026-08-22T02:17:22,879 creating '/tmp/pip-wheel-7d1y4fsl/.tmp-mz97rm7w/papyrus_scripts-3.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-08-22T02:17:22,881 adding 'papyrus_scripts/__init__.py' 2026-08-22T02:17:22,883 adding 'papyrus_scripts/__main__.py' 2026-08-22T02:17:22,886 adding 'papyrus_scripts/cli.py' 2026-08-22T02:17:22,893 adding 'papyrus_scripts/download.py' 2026-08-22T02:17:22,896 adding 'papyrus_scripts/fingerprint.py' 2026-08-22T02:17:22,898 adding 'papyrus_scripts/matchRCSB.py' 2026-08-22T02:17:22,903 adding 'papyrus_scripts/modelling.py' 2026-08-22T02:17:22,905 adding 'papyrus_scripts/neuralnet.py' 2026-08-22T02:17:22,913 adding 'papyrus_scripts/oop.py' 2026-08-22T02:17:22,919 adding 'papyrus_scripts/preprocess.py' 2026-08-22T02:17:22,922 adding 'papyrus_scripts/reader.py' 2026-08-22T02:17:22,931 adding 'papyrus_scripts/subsim_search.py' 2026-08-22T02:17:22,941 adding 'papyrus_scripts/utils/IO.py' 2026-08-22T02:17:22,943 adding 'papyrus_scripts/utils/UniprotMatch.py' 2026-08-22T02:17:22,944 adding 'papyrus_scripts/utils/__init__.py' 2026-08-22T02:17:22,946 adding 'papyrus_scripts/utils/aliases.json' 2026-08-22T02:17:22,950 adding 'papyrus_scripts/utils/links.json' 2026-08-22T02:17:22,954 adding 'papyrus_scripts/utils/mol_reader.py' 2026-08-22T02:17:22,957 adding 'papyrus_scripts-3.0.0.dist-info/licenses/LICENSE' 2026-08-22T02:17:22,958 adding 'papyrus_scripts-3.0.0.dist-info/METADATA' 2026-08-22T02:17:22,960 adding 'papyrus_scripts-3.0.0.dist-info/WHEEL' 2026-08-22T02:17:22,961 adding 'papyrus_scripts-3.0.0.dist-info/entry_points.txt' 2026-08-22T02:17:22,961 adding 'papyrus_scripts-3.0.0.dist-info/top_level.txt' 2026-08-22T02:17:22,962 adding 'papyrus_scripts-3.0.0.dist-info/RECORD' 2026-08-22T02:17:22,965 removing build/bdist.linux-armv7l/wheel 2026-08-22T02:17:23,072 Building wheel for papyrus-scripts (pyproject.toml): finished with status 'done' 2026-08-22T02:17:23,080 Created wheel for papyrus-scripts: filename=papyrus_scripts-3.0.0-py3-none-any.whl size=147986 sha256=5196585c9a618edb5465b74b229695525b49b32b6cba70e533a5e25ecd66497e 2026-08-22T02:17:23,081 Stored in directory: /tmp/pip-ephem-wheel-cache-lowya879/wheels/b8/40/e6/3df7614992c1ea38caff4a879c334292fad7a42c08f9f56341 2026-08-22T02:17:23,094 Successfully built papyrus-scripts 2026-08-22T02:17:23,100 Removed build tracker: '/tmp/pip-build-tracker-3_zldfcn'