2026-08-23T01:34:21,912 Created temporary directory: /tmp/pip-ephem-wheel-cache-qeob3m7s 2026-08-23T01:34:21,913 Created temporary directory: /tmp/pip-build-tracker-rrnlirsp 2026-08-23T01:34:21,914 Initialized build tracking at /tmp/pip-build-tracker-rrnlirsp 2026-08-23T01:34:21,914 Created build tracker: /tmp/pip-build-tracker-rrnlirsp 2026-08-23T01:34:21,915 Entered build tracker: /tmp/pip-build-tracker-rrnlirsp 2026-08-23T01:34:21,916 Created temporary directory: /tmp/pip-wheel-cfw6dtzs 2026-08-23T01:34:21,918 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-23T01:34:21,921 Created temporary directory: /tmp/pip-ephem-wheel-cache-4e71e0h_ 2026-08-23T01:34:21,943 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-23T01:34:21,946 2 location(s) to search for versions of dendropy: 2026-08-23T01:34:21,946 * https://pypi.org/simple/dendropy/ 2026-08-23T01:34:21,946 * https://www.piwheels.org/simple/dendropy/ 2026-08-23T01:34:21,947 Fetching project page and analyzing links: https://pypi.org/simple/dendropy/ 2026-08-23T01:34:21,948 Getting page https://pypi.org/simple/dendropy/ 2026-08-23T01:34:21,949 Found index url https://pypi.org/simple 2026-08-23T01:34:22,185 Fetched page https://pypi.org/simple/dendropy/ as application/vnd.pypi.simple.v1+json 2026-08-23T01:34:22,194 Found link https://files.pythonhosted.org/packages/03/48/8379b3e170d60052da7ccf3387549af17d46808a39062fbb234df3038fa0/DendroPy-3.7.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.0 2026-08-23T01:34:22,195 Found link https://files.pythonhosted.org/packages/17/0a/914df0e24dc378acdd9cb1705c1fcfcf15dd1da8992de567a4cce85bc31e/DendroPy-3.7.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.7.1 2026-08-23T01:34:22,196 Found link https://files.pythonhosted.org/packages/a2/f5/5c4fb1cde35799eeacb35ac289c271371a0c0fd3197548fab7e184900cc7/DendroPy-3.8.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.0 2026-08-23T01:34:22,196 Found link https://files.pythonhosted.org/packages/95/73/7b1084d03e025b27c79342d6935810969edb86677ef3e5eb1f9e5aec1e6f/DendroPy-3.8.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.8.1 2026-08-23T01:34:22,197 Found link https://files.pythonhosted.org/packages/18/2e/141c0d6a99905b9be3256aae6a87504f14853b20e40a6d89c7c4c465769d/DendroPy-3.9.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.9.0 2026-08-23T01:34:22,198 Found link https://files.pythonhosted.org/packages/7e/08/a968b51274c8476084521f97af4e8fadd09a6b42a727141f502cc33767c5/DendroPy-3.10.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.0 2026-08-23T01:34:22,199 Found link https://files.pythonhosted.org/packages/3a/26/552efe612d37cff025f1dd1350eb643edd6dda1cb628d7cbe572e343a049/DendroPy-3.10.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.10.1 2026-08-23T01:34:22,199 Found link https://files.pythonhosted.org/packages/0f/3e/5549b668d04241c77c8f5b26f0c94a87ad93b6b9089fc6bcd510eba5d5f4/DendroPy-3.11.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.11.0 2026-08-23T01:34:22,200 Found link https://files.pythonhosted.org/packages/43/22/69b7713b094697f8a432abe96c44a155519ef67b3c31221de32f4c3d5fa5/DendroPy-3.12.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.0 2026-08-23T01:34:22,201 Found link https://files.pythonhosted.org/packages/5f/ae/14c92b087632944149cca61ec8daf41eee0083d0fad30c9248edb7e227d2/DendroPy-3.12.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.2 2026-08-23T01:34:22,201 Found link https://files.pythonhosted.org/packages/3d/c0/e0a20d1cf4b268757842a03f36452095fccb8eae5ebd541548e29c6ca1e3/DendroPy-3.12.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 3.12.3 2026-08-23T01:34:22,202 Found link https://files.pythonhosted.org/packages/f0/d3/e0180bf1a8d599b8f847ab7a1b19fe4d7a95b3613c57b57108e2a48bb59f/DendroPy-4.0.0.rc1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0.rc1 2026-08-23T01:34:22,203 Found link https://files.pythonhosted.org/packages/55/dd/0d59b7bde4b230fadb999bc84cc45668a53733cb63e4aacf7e6ab4a9e175/DendroPy-4.0.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.0 2026-08-23T01:34:22,203 Found link https://files.pythonhosted.org/packages/52/ba/02652626ed0d56afadc990e6540d998217831d856170ff0c68c3afbef866/DendroPy-4.0.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.1 2026-08-23T01:34:22,204 Found link https://files.pythonhosted.org/packages/62/10/117c87b76f5f84d4559bd7ad25af04f11369ef8267f3c8e7d62769efc85d/DendroPy-4.0.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.2 2026-08-23T01:34:22,204 Found link https://files.pythonhosted.org/packages/66/0b/72ca62a6e87ddb9b70cac2cf1fc199ca00127fc168c52bcbcbf30cfb5947/DendroPy-4.0.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.0.3 2026-08-23T01:34:22,205 Found link https://files.pythonhosted.org/packages/65/3a/19556a58c560de488dffbf3c7fe7c9ed34c1a6223f0dfe971224a42aaf39/DendroPy-4.1.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.1.0 2026-08-23T01:34:22,205 Found link https://files.pythonhosted.org/packages/e6/5a/d48c8d3f8100efd5eb6e6142f28bf1c13200e08882e59596369035ebc138/DendroPy-4.2.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.2.0 2026-08-23T01:34:22,206 Found link https://files.pythonhosted.org/packages/58/14/d4559893d72675b322c1d60229ef3490bc5c2f5b28c5cc339956aaf8f507/DendroPy-4.3.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.3.0 2026-08-23T01:34:22,207 Found link https://files.pythonhosted.org/packages/f5/21/17e4fbb1c2a68421eec43930b1e118660c7483229f1b28ba4402e8856884/DendroPy-4.4.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.4.0 2026-08-23T01:34:22,207 Found link https://files.pythonhosted.org/packages/e0/f3/222e939e250e71234031d182e58704fff1c3296140f91f70d7ef8b3e17a6/DendroPy-4.5.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.1 2026-08-23T01:34:22,208 Found link https://files.pythonhosted.org/packages/f9/10/125c181b1d97ffc4661a60ec897cfe058dc46cb53900d807819464c3510f/DendroPy-4.5.2.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.5.2 2026-08-23T01:34:22,209 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/b0/c0/841e46da39a4dae07a5cd4e7a1c9472acbdd623f820b125b5995dd342c9a/DendroPy-4.6.0-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2026-08-23T01:34:22,209 Found link https://files.pythonhosted.org/packages/8a/88/864aa93d31dd210e5b9bd79cfb3c9ddaf0bfab9b70dd212fb8247ab72f46/DendroPy-4.6.0.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.0 2026-08-23T01:34:22,210 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/7c/3b/f880fd07cb79a46ca838e46ba021fcdaa464bb21e2a9264a7afe77046a88/DendroPy-4.6.1-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2026-08-23T01:34:22,211 Found link https://files.pythonhosted.org/packages/35/fc/0ff301d0f2484b61f2cc46cfd7649c530cad6313c7f7a695f8cabff8a061/DendroPy-4.6.1.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.1 2026-08-23T01:34:22,211 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/a9/70/c715b8467b7cd08a847ad303ce8a2d236e001a526f37179fe77e503602cb/DendroPy-4.6.3-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2026-08-23T01:34:22,212 Found link https://files.pythonhosted.org/packages/52/f2/c8524894d8bbd5cfb4eca7c350e4407137bd11a752a152c62617ce6f6b76/DendroPy-4.6.3.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.3 2026-08-23T01:34:22,213 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/f1/f5/fb4483829a7a9b08c974281d2519d110b69284a43dec7ae320e9971fe4f5/DendroPy-4.6.4-py3-none-any.whl (from https://pypi.org/simple/dendropy/) 2026-08-23T01:34:22,213 Found link https://files.pythonhosted.org/packages/29/7a/0e09e052a746c9e97e45d6e0803e705e13426aa01a13ab845f6108ea4fd5/DendroPy-4.6.4.tar.gz (from https://pypi.org/simple/dendropy/), version: 4.6.4 2026-08-23T01:34:22,214 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/54/2a/e95f42bcc16806f5f5ed49ed8b613830c3831e8a1ecea845756b882672e1/DendroPy-5.0.0-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6) 2026-08-23T01:34:22,215 Found link https://files.pythonhosted.org/packages/96/33/c3a06df7aec829e8b79b91503708d750d9c4842cfc4377ae215c1e61d97d/DendroPy-5.0.0.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6), version: 5.0.0 2026-08-23T01:34:22,216 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/16/96/7dcfffa89fc659669e697bcbdf01e7eac37ab0676aa242323a23366132a2/DendroPy-5.0.1-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6) 2026-08-23T01:34:22,217 Found link https://files.pythonhosted.org/packages/42/4b/6b300d145575ac7445e3b79b5c0c3a4ea441937278528b8dbd5b0aab42fc/DendroPy-5.0.1.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.6), version: 5.0.1 2026-08-23T01:34:22,217 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/f9/20/95c487820aac183b540c1d9d26d5778c9975015c3505137c5c5cd230a7ee/DendroPy-5.0.7-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7) 2026-08-23T01:34:22,218 Found link https://files.pythonhosted.org/packages/63/35/150e49455d787ce95487b2f9fa1d9766054ac5df304eae3fc2d24eabf1f4/DendroPy-5.0.7.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7), version: 5.0.7 2026-08-23T01:34:22,219 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/29/3d/d93dfd44e8615b39fab0b939bc7d8030021c092bffb3cc3c50580e75fc8f/DendroPy-5.0.8-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7) 2026-08-23T01:34:22,219 Found link https://files.pythonhosted.org/packages/76/e4/ea83865a284c81e58d55936578dbfaa012afd7a791a75e1105c46e928f1d/DendroPy-5.0.8.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7), version: 5.0.8 2026-08-23T01:34:22,220 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/81/1d/aa89b03a4b86538a47814c4c312770135c98fc6cbf52f5e1e4a360ff4cdb/dendropy-5.0.10-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7) 2026-08-23T01:34:22,221 Found link https://files.pythonhosted.org/packages/d4/53/88c39ee7789e56c16be7bf0a895317a6a84b05ff18b390aaad6b8381c4f3/dendropy-5.0.10.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7), version: 5.0.10 2026-08-23T01:34:22,222 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/30/ba/3b2250bb57904ab8f4bb095724b035722ed33c57ecf1fda2bc9b97bd5676/dendropy-5.0.12-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7) 2026-08-23T01:34:22,223 Found link https://files.pythonhosted.org/packages/83/11/b7343795581e97be7d9b85416c8d4770d9c9f5b6d29dfc96b2903d3ccaec/dendropy-5.0.12.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7), version: 5.0.12 2026-08-23T01:34:22,224 Skipping link: No binaries permitted for dendropy: https://files.pythonhosted.org/packages/29/53/f10a48f0e56fbaf7045f2ecfdc708255bc1e69960b1bdca6d70ae4dcf661/dendropy-5.0.13-py3-none-any.whl (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7) 2026-08-23T01:34:22,225 Found link https://files.pythonhosted.org/packages/4a/cc/4c8c596d317bbb86d21d057f44d513045a99ca29e76ab73ba9a6a321fc92/dendropy-5.0.13.tar.gz (from https://pypi.org/simple/dendropy/) (requires-python:>=3.7), version: 5.0.13 2026-08-23T01:34:22,226 Fetching project page and analyzing links: https://www.piwheels.org/simple/dendropy/ 2026-08-23T01:34:22,226 Getting page https://www.piwheels.org/simple/dendropy/ 2026-08-23T01:34:22,228 Found index url https://www.piwheels.org/simple 2026-08-23T01:34:22,427 Fetched page https://www.piwheels.org/simple/dendropy/ as text/html 2026-08-23T01:34:22,433 Skipping link: No binaries permitted for dendropy: https://www.piwheels.org/simple/dendropy/dendropy-5.0.12-py3-none-any.whl#sha256=4029fed83f7cdf3b795f40e863f4ee75b67ae20a1c430e7ed4f94236de2b8c71 (from https://www.piwheels.org/simple/dendropy/) (requires-python:>=3.7) 2026-08-23T01:34:22,434 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/dendropy-5.0.10-py3-none-any.whl#sha256=f67e8f017135978518ae0a7ebc71e27e3607e2d20de88036dfb878bfcf86e78a (from https://www.piwheels.org/simple/dendropy/) (requires-python:>=3.7) 2026-08-23T01:34:22,434 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/dendropy-5.0.8-py3-none-any.whl#sha256=4b2177e7efdd852842ddc447290d9cd660ef9de7a55e58f91a671dd2e554c546 (from https://www.piwheels.org/simple/dendropy/) (requires-python:>=3.7) 2026-08-23T01:34:22,435 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-5.0.1-py3-none-any.whl#sha256=794ffe63cbafa18126d9c097df7549a80816af7d5ee9090d54b205c03a95f095 (from https://www.piwheels.org/simple/dendropy/) (requires-python:>=3.6) 2026-08-23T01:34:22,435 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-5.0.0-py3-none-any.whl#sha256=d3381f9f3c02ccdad2b42fbd4369ebe09d758a25f867ba03db96bebcb8639d7c (from https://www.piwheels.org/simple/dendropy/) (requires-python:>=3.6) 2026-08-23T01:34:22,436 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.6.4-py3-none-any.whl#sha256=f400bcc098632c539bc34d194679fbd3c544fcd4ac1410b8fbfab1e17ffb6a84 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,436 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.6.3-py3-none-any.whl#sha256=55d64c6747ef5feb8125c6b3ba58937d2c93874d1ae798501c4b5a3d6cd56cc2 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,437 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.6.1-py3-none-any.whl#sha256=da58df7fced8722b607b168cb9ffec744a299b5ebdebb62786835351122e5236 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,438 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.6.0-py3-none-any.whl#sha256=967847ceda8c3c50c9c82bf0b17ad1cfed383857502a32878e1870fde0b9f662 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,438 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.5.2-py3-none-any.whl#sha256=7492efc1d60e0d280a9effe9093dd14da694300275c2dbc2c3cd116390521bc3 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,439 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.5.1-py3-none-any.whl#sha256=0113d22b31642c3c63327d0eab46f2aff2079181bb537c2007796802874bed73 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,439 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.4.0-py3-none-any.whl#sha256=04bb1c1125a9435d6f61e956aaa59a6789d16640f9371e367f6182331570eeb9 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,440 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.3.0-py3-none-any.whl#sha256=b762edba2a883b8a9549d498742e7ffe9126f33855d270fc0fa42c0ffd77e224 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,440 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.2.0-py3-none-any.whl#sha256=b708e09e2b790f482496fd2e17b5159e212994a6d7d234771e2c9e5e208aa55e (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,441 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.1.0-py3-none-any.whl#sha256=1b13aa093d01409bfb95728a68dbff117529dc40cd5ac6fa4d4fc30756ef5357 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,442 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.0.3-py3-none-any.whl#sha256=eea9ba2017437bada349db5b12b6d9c8c6dfcbfea1832bac2a862b3c5503ceb3 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,443 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.0.2-py3-none-any.whl#sha256=81648919d17fb5fdc36f4053aff572b4a2d358a189d2462e15aab8760eb71d1a (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,443 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.0.1-py3-none-any.whl#sha256=4ba8a912afd561e3116cdfbcd6c168cafc69eec3339bfdb79858e93000402410 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,443 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.0.0-py3-none-any.whl#sha256=4687108db4e411473e5ccce4ec9a99fc10ad22b8da4c6e817154202a3e6cc0e9 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,444 Skipping link: No binaries permitted for dendropy: https://archive1.piwheels.org/simple/dendropy/DendroPy-4.0.0rc1-py3-none-any.whl#sha256=0310d7072108356c0655941033b16778503a2c6ec2d84ac1eeb88a41eb92a543 (from https://www.piwheels.org/simple/dendropy/) 2026-08-23T01:34:22,444 Skipping link: not a file: https://www.piwheels.org/simple/dendropy/ 2026-08-23T01:34:22,445 Skipping link: not a file: https://pypi.org/simple/dendropy/ 2026-08-23T01:34:22,468 Given no hashes to check 1 links for project 'dendropy': discarding no candidates 2026-08-23T01:34:22,486 Collecting dendropy==5.0.13 2026-08-23T01:34:22,489 Created temporary directory: /tmp/pip-unpack-t5695t_4 2026-08-23T01:34:22,649 Downloading dendropy-5.0.13.tar.gz (398 kB) 2026-08-23T01:34:23,083 Added dendropy==5.0.13 from https://files.pythonhosted.org/packages/4a/cc/4c8c596d317bbb86d21d057f44d513045a99ca29e76ab73ba9a6a321fc92/dendropy-5.0.13.tar.gz to build tracker '/tmp/pip-build-tracker-rrnlirsp' 2026-08-23T01:34:23,085 Running setup.py (path:/tmp/pip-wheel-cfw6dtzs/dendropy_e019e726dad14c36aaef051e121e0543/setup.py) egg_info for package dendropy 2026-08-23T01:34:23,086 Created temporary directory: /tmp/pip-pip-egg-info-mjam4prd 2026-08-23T01:34:23,086 Preparing metadata (setup.py): started 2026-08-23T01:34:23,088 Running command python setup.py egg_info 2026-08-23T01:34:23,646 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2026-08-23T01:34:23,646 !! 2026-08-23T01:34:23,648 ******************************************************************************** 2026-08-23T01:34:23,648 Requirements should be satisfied by a PEP 517 installer. 2026-08-23T01:34:23,649 If you are using pip, you can try `pip install --use-pep517`. 2026-08-23T01:34:23,650 This deprecation is overdue, please update your project and remove deprecated 2026-08-23T01:34:23,651 calls to avoid build errors in the future. 2026-08-23T01:34:23,651 ******************************************************************************** 2026-08-23T01:34:23,652 !! 2026-08-23T01:34:23,653 dist.fetch_build_eggs(dist.setup_requires) 2026-08-23T01:34:26,352 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:288: UserWarning: Unknown distribution option: 'test_suite' 2026-08-23T01:34:26,353 warnings.warn(msg) 2026-08-23T01:34:26,353 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:288: UserWarning: Unknown distribution option: 'tests_require' 2026-08-23T01:34:26,354 warnings.warn(msg) 2026-08-23T01:34:26,412 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-23T01:34:26,413 !! 2026-08-23T01:34:26,414 ******************************************************************************** 2026-08-23T01:34:26,414 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-23T01:34:26,415 License :: OSI Approved :: BSD License 2026-08-23T01:34:26,416 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-23T01:34:26,416 ******************************************************************************** 2026-08-23T01:34:26,417 !! 2026-08-23T01:34:26,418 self._finalize_license_expression() 2026-08-23T01:34:26,443 running egg_info 2026-08-23T01:34:26,472 creating /tmp/pip-pip-egg-info-mjam4prd/DendroPy.egg-info 2026-08-23T01:34:26,472 writing /tmp/pip-pip-egg-info-mjam4prd/DendroPy.egg-info/PKG-INFO 2026-08-23T01:34:26,477 writing dependency_links to /tmp/pip-pip-egg-info-mjam4prd/DendroPy.egg-info/dependency_links.txt 2026-08-23T01:34:26,478 writing entry points to /tmp/pip-pip-egg-info-mjam4prd/DendroPy.egg-info/entry_points.txt 2026-08-23T01:34:26,480 writing requirements to /tmp/pip-pip-egg-info-mjam4prd/DendroPy.egg-info/requires.txt 2026-08-23T01:34:26,481 writing top-level names to /tmp/pip-pip-egg-info-mjam4prd/DendroPy.egg-info/top_level.txt 2026-08-23T01:34:26,482 writing manifest file '/tmp/pip-pip-egg-info-mjam4prd/DendroPy.egg-info/SOURCES.txt' 2026-08-23T01:34:26,599 reading manifest file '/tmp/pip-pip-egg-info-mjam4prd/DendroPy.egg-info/SOURCES.txt' 2026-08-23T01:34:26,601 reading manifest template 'MANIFEST.in' 2026-08-23T01:34:26,602 warning: no files found matching 'README.rst' 2026-08-23T01:34:26,603 warning: no files found matching 'doc/Makefile' 2026-08-23T01:34:26,603 warning: no files found matching '*' under directory 'doc/source' 2026-08-23T01:34:26,604 warning: no files found matching '*' under directory 'tests/data' 2026-08-23T01:34:26,604 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-08-23T01:34:26,606 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-08-23T01:34:26,606 warning: no previously-included files matching '.gitignore' found anywhere in distribution 2026-08-23T01:34:26,607 warning: no previously-included files matching '.gitattributes' found anywhere in distribution 2026-08-23T01:34:26,608 warning: no previously-included files matching '.idea' found anywhere in distribution 2026-08-23T01:34:26,609 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-08-23T01:34:26,610 adding license file 'LICENSE.rst' 2026-08-23T01:34:26,610 adding license file 'NOTICES.rst' 2026-08-23T01:34:26,611 adding license file 'AUTHORS.rst' 2026-08-23T01:34:26,631 writing manifest file '/tmp/pip-pip-egg-info-mjam4prd/DendroPy.egg-info/SOURCES.txt' 2026-08-23T01:34:26,744 Preparing metadata (setup.py): finished with status 'done' 2026-08-23T01:34:26,749 Source in /tmp/pip-wheel-cfw6dtzs/dendropy_e019e726dad14c36aaef051e121e0543 has version 5.0.13, which satisfies requirement dendropy==5.0.13 from https://files.pythonhosted.org/packages/4a/cc/4c8c596d317bbb86d21d057f44d513045a99ca29e76ab73ba9a6a321fc92/dendropy-5.0.13.tar.gz 2026-08-23T01:34:26,750 Removed dendropy==5.0.13 from https://files.pythonhosted.org/packages/4a/cc/4c8c596d317bbb86d21d057f44d513045a99ca29e76ab73ba9a6a321fc92/dendropy-5.0.13.tar.gz from build tracker '/tmp/pip-build-tracker-rrnlirsp' 2026-08-23T01:34:26,756 Created temporary directory: /tmp/pip-unpack-1_32ef7n 2026-08-23T01:34:26,757 Building wheels for collected packages: dendropy 2026-08-23T01:34:26,761 Created temporary directory: /tmp/pip-wheel-ju7y4rcs 2026-08-23T01:34:26,762 Building wheel for dendropy (setup.py): started 2026-08-23T01:34:26,764 Destination directory: /tmp/pip-wheel-ju7y4rcs 2026-08-23T01:34:26,764 Running command python setup.py bdist_wheel 2026-08-23T01:34:27,302 /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. 2026-08-23T01:34:27,303 !! 2026-08-23T01:34:27,304 ******************************************************************************** 2026-08-23T01:34:27,304 Requirements should be satisfied by a PEP 517 installer. 2026-08-23T01:34:27,305 If you are using pip, you can try `pip install --use-pep517`. 2026-08-23T01:34:27,306 This deprecation is overdue, please update your project and remove deprecated 2026-08-23T01:34:27,306 calls to avoid build errors in the future. 2026-08-23T01:34:27,306 ******************************************************************************** 2026-08-23T01:34:27,307 !! 2026-08-23T01:34:27,308 dist.fetch_build_eggs(dist.setup_requires) 2026-08-23T01:34:27,525 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:288: UserWarning: Unknown distribution option: 'test_suite' 2026-08-23T01:34:27,525 warnings.warn(msg) 2026-08-23T01:34:27,526 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py:288: UserWarning: Unknown distribution option: 'tests_require' 2026-08-23T01:34:27,526 warnings.warn(msg) 2026-08-23T01:34:27,820 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-23T01:34:27,820 !! 2026-08-23T01:34:27,821 ******************************************************************************** 2026-08-23T01:34:27,822 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-23T01:34:27,823 License :: OSI Approved :: BSD License 2026-08-23T01:34:27,824 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-23T01:34:27,825 ******************************************************************************** 2026-08-23T01:34:27,826 !! 2026-08-23T01:34:27,827 self._finalize_license_expression() 2026-08-23T01:34:27,827 running bdist_wheel 2026-08-23T01:34:27,965 running build 2026-08-23T01:34:27,966 running build_py 2026-08-23T01:34:27,996 creating build/lib/dendropy 2026-08-23T01:34:27,998 copying src/dendropy/__init__.py -> build/lib/dendropy 2026-08-23T01:34:28,001 copying src/dendropy/__main__.py -> build/lib/dendropy 2026-08-23T01:34:28,004 creating build/lib/dendropy/interop 2026-08-23T01:34:28,005 copying src/dendropy/interop/gbif.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,008 copying src/dendropy/interop/raxml.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,011 copying src/dendropy/interop/biopython.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,013 copying src/dendropy/interop/ape.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,015 copying src/dendropy/interop/muscle.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,017 copying src/dendropy/interop/__init__.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,019 copying src/dendropy/interop/entrez.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,021 copying src/dendropy/interop/rstats.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,023 copying src/dendropy/interop/rspr.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,026 copying src/dendropy/interop/ete.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,028 copying src/dendropy/interop/genbank.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,030 copying src/dendropy/interop/itol.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,033 copying src/dendropy/interop/seqgen.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,036 copying src/dendropy/interop/paup.py -> build/lib/dendropy/interop 2026-08-23T01:34:28,039 creating build/lib/dendropy/application 2026-08-23T01:34:28,040 copying src/dendropy/application/dendropy_format.py -> build/lib/dendropy/application 2026-08-23T01:34:28,043 copying src/dendropy/application/sumtrees.py -> build/lib/dendropy/application 2026-08-23T01:34:28,046 copying src/dendropy/application/sumlabels.py -> build/lib/dendropy/application 2026-08-23T01:34:28,049 copying src/dendropy/application/__init__.py -> build/lib/dendropy/application 2026-08-23T01:34:28,051 creating build/lib/dendropy/utility 2026-08-23T01:34:28,052 copying src/dendropy/utility/processio.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,054 copying src/dendropy/utility/container.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,057 copying src/dendropy/utility/textprocessing.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,060 copying src/dendropy/utility/error.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,062 copying src/dendropy/utility/messaging.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,064 copying src/dendropy/utility/deprecate.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,066 copying src/dendropy/utility/constants.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,067 copying src/dendropy/utility/filesys.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,070 copying src/dendropy/utility/vcsinfo.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,072 copying src/dendropy/utility/timeprocessing.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,074 copying src/dendropy/utility/__init__.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,076 copying src/dendropy/utility/metavar.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,077 copying src/dendropy/utility/bitprocessing.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,079 copying src/dendropy/utility/urlio.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,081 copying src/dendropy/utility/terminal.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,083 copying src/dendropy/utility/debug.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,085 copying src/dendropy/utility/bibtex.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,087 copying src/dendropy/utility/cli.py -> build/lib/dendropy/utility 2026-08-23T01:34:28,090 creating build/lib/dendropy/model 2026-08-23T01:34:28,091 copying src/dendropy/model/birthdeath.py -> build/lib/dendropy/model 2026-08-23T01:34:28,095 copying src/dendropy/model/protractedspeciation.py -> build/lib/dendropy/model 2026-08-23T01:34:28,098 copying src/dendropy/model/continuous.py -> build/lib/dendropy/model 2026-08-23T01:34:28,101 copying src/dendropy/model/coalescent.py -> build/lib/dendropy/model 2026-08-23T01:34:28,104 copying src/dendropy/model/discrete.py -> build/lib/dendropy/model 2026-08-23T01:34:28,106 copying src/dendropy/model/parsimony.py -> build/lib/dendropy/model 2026-08-23T01:34:28,110 copying src/dendropy/model/multispeciescoalescent.py -> build/lib/dendropy/model 2026-08-23T01:34:28,112 copying src/dendropy/model/reconcile.py -> build/lib/dendropy/model 2026-08-23T01:34:28,115 copying src/dendropy/model/__init__.py -> build/lib/dendropy/model 2026-08-23T01:34:28,117 copying src/dendropy/model/treeshape.py -> build/lib/dendropy/model 2026-08-23T01:34:28,119 creating build/lib/dendropy/plot 2026-08-23T01:34:28,120 copying src/dendropy/plot/__init__.py -> build/lib/dendropy/plot 2026-08-23T01:34:28,122 copying src/dendropy/plot/tikzplot.py -> build/lib/dendropy/plot 2026-08-23T01:34:28,125 copying src/dendropy/plot/asciiplot.py -> build/lib/dendropy/plot 2026-08-23T01:34:28,129 creating build/lib/dendropy/calculate 2026-08-23T01:34:28,130 copying src/dendropy/calculate/phylogeneticdistance.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,133 copying src/dendropy/calculate/combinatorics.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,135 copying src/dendropy/calculate/probability.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,137 copying src/dendropy/calculate/profiledistance.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,140 copying src/dendropy/calculate/popgenstat.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,142 copying src/dendropy/calculate/statistics.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,145 copying src/dendropy/calculate/__init__.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,146 copying src/dendropy/calculate/treesum.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,149 copying src/dendropy/calculate/treescore.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,150 copying src/dendropy/calculate/treecompare.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,153 copying src/dendropy/calculate/mathfn.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,155 copying src/dendropy/calculate/treemeasure.py -> build/lib/dendropy/calculate 2026-08-23T01:34:28,158 creating build/lib/dendropy/legacy 2026-08-23T01:34:28,159 copying src/dendropy/legacy/continuous.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,160 copying src/dendropy/legacy/treecalc.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,162 copying src/dendropy/legacy/coalescent.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,164 copying src/dendropy/legacy/treemanip.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,166 copying src/dendropy/legacy/popgenstat.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,169 copying src/dendropy/legacy/reconcile.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,170 copying src/dendropy/legacy/__init__.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,172 copying src/dendropy/legacy/seqsim.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,174 copying src/dendropy/legacy/ncbi.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,176 copying src/dendropy/legacy/popgensim.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,178 copying src/dendropy/legacy/seqmodel.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,180 copying src/dendropy/legacy/treesim.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,182 copying src/dendropy/legacy/treesum.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,184 copying src/dendropy/legacy/treesplit.py -> build/lib/dendropy/legacy 2026-08-23T01:34:28,187 creating build/lib/dendropy/mathlib 2026-08-23T01:34:28,188 copying src/dendropy/mathlib/probability.py -> build/lib/dendropy/mathlib 2026-08-23T01:34:28,190 copying src/dendropy/mathlib/statistics.py -> build/lib/dendropy/mathlib 2026-08-23T01:34:28,191 copying src/dendropy/mathlib/__init__.py -> build/lib/dendropy/mathlib 2026-08-23T01:34:28,193 copying src/dendropy/mathlib/mathfn.py -> build/lib/dendropy/mathlib 2026-08-23T01:34:28,196 creating build/lib/dendropy/dataio 2026-08-23T01:34:28,197 copying src/dendropy/dataio/multiphylipreader.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,199 copying src/dendropy/dataio/nexuswriter.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,201 copying src/dendropy/dataio/newick.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,203 copying src/dendropy/dataio/newickreader.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,206 copying src/dendropy/dataio/phylipreader.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,208 copying src/dendropy/dataio/fastawriter.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,210 copying src/dendropy/dataio/nexusreader.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,214 copying src/dendropy/dataio/newickyielder.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,216 copying src/dendropy/dataio/phylipwriter.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,218 copying src/dendropy/dataio/nexmlwriter.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,221 copying src/dendropy/dataio/nexmlyielder.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,223 copying src/dendropy/dataio/tokenizer.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,225 copying src/dendropy/dataio/nexusprocessing.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,227 copying src/dendropy/dataio/ioservice.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,230 copying src/dendropy/dataio/newickwriter.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,232 copying src/dendropy/dataio/__init__.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,234 copying src/dendropy/dataio/xmlprocessing.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,237 copying src/dendropy/dataio/nexusyielder.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,239 copying src/dendropy/dataio/fastareader.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,241 copying src/dendropy/dataio/nexmlreader.py -> build/lib/dendropy/dataio 2026-08-23T01:34:28,244 creating build/lib/dendropy/datamodel 2026-08-23T01:34:28,245 copying src/dendropy/datamodel/basemodel.py -> build/lib/dendropy/datamodel 2026-08-23T01:34:28,249 copying src/dendropy/datamodel/taxonmodel.py -> build/lib/dendropy/datamodel 2026-08-23T01:34:28,252 copying src/dendropy/datamodel/charstatemodel.py -> build/lib/dendropy/datamodel 2026-08-23T01:34:28,255 copying src/dendropy/datamodel/datasetmodel.py -> build/lib/dendropy/datamodel 2026-08-23T01:34:28,257 copying src/dendropy/datamodel/__init__.py -> build/lib/dendropy/datamodel 2026-08-23T01:34:28,259 copying src/dendropy/datamodel/treecollectionmodel.py -> build/lib/dendropy/datamodel 2026-08-23T01:34:28,263 copying src/dendropy/datamodel/charmatrixmodel.py -> build/lib/dendropy/datamodel 2026-08-23T01:34:28,267 creating build/lib/dendropy/simulate 2026-08-23T01:34:28,268 copying src/dendropy/simulate/charsim.py -> build/lib/dendropy/simulate 2026-08-23T01:34:28,269 copying src/dendropy/simulate/__init__.py -> build/lib/dendropy/simulate 2026-08-23T01:34:28,271 copying src/dendropy/simulate/popgensim.py -> build/lib/dendropy/simulate 2026-08-23T01:34:28,274 copying src/dendropy/simulate/treesim.py -> build/lib/dendropy/simulate 2026-08-23T01:34:28,276 creating build/lib/dendropy/utility/libexec 2026-08-23T01:34:28,277 copying src/dendropy/utility/libexec/__init__.py -> build/lib/dendropy/utility/libexec 2026-08-23T01:34:28,280 creating build/lib/dendropy/datamodel/treemodel 2026-08-23T01:34:28,281 copying src/dendropy/datamodel/treemodel/_edge.py -> build/lib/dendropy/datamodel/treemodel 2026-08-23T01:34:28,283 copying src/dendropy/datamodel/treemodel/__init__.py -> build/lib/dendropy/datamodel/treemodel 2026-08-23T01:34:28,285 copying src/dendropy/datamodel/treemodel/_node.py -> build/lib/dendropy/datamodel/treemodel 2026-08-23T01:34:28,288 copying src/dendropy/datamodel/treemodel/_bipartition.py -> build/lib/dendropy/datamodel/treemodel 2026-08-23T01:34:28,290 copying src/dendropy/datamodel/treemodel/_tree.py -> build/lib/dendropy/datamodel/treemodel 2026-08-23T01:34:28,296 running egg_info 2026-08-23T01:34:28,324 writing src/DendroPy.egg-info/PKG-INFO 2026-08-23T01:34:28,328 writing dependency_links to src/DendroPy.egg-info/dependency_links.txt 2026-08-23T01:34:28,329 writing entry points to src/DendroPy.egg-info/entry_points.txt 2026-08-23T01:34:28,331 writing requirements to src/DendroPy.egg-info/requires.txt 2026-08-23T01:34:28,332 writing top-level names to src/DendroPy.egg-info/top_level.txt 2026-08-23T01:34:28,391 reading manifest file 'src/DendroPy.egg-info/SOURCES.txt' 2026-08-23T01:34:28,399 reading manifest template 'MANIFEST.in' 2026-08-23T01:34:28,400 warning: no files found matching 'README.rst' 2026-08-23T01:34:28,401 warning: no files found matching 'doc/Makefile' 2026-08-23T01:34:28,401 warning: no files found matching '*' under directory 'doc/source' 2026-08-23T01:34:28,402 warning: no files found matching '*' under directory 'tests/data' 2026-08-23T01:34:28,403 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-08-23T01:34:28,405 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-08-23T01:34:28,406 warning: no previously-included files matching '.gitignore' found anywhere in distribution 2026-08-23T01:34:28,407 warning: no previously-included files matching '.gitattributes' found anywhere in distribution 2026-08-23T01:34:28,409 warning: no previously-included files matching '.idea' found anywhere in distribution 2026-08-23T01:34:28,410 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-08-23T01:34:28,411 adding license file 'LICENSE.rst' 2026-08-23T01:34:28,411 adding license file 'NOTICES.rst' 2026-08-23T01:34:28,411 adding license file 'AUTHORS.rst' 2026-08-23T01:34:28,419 writing manifest file 'src/DendroPy.egg-info/SOURCES.txt' 2026-08-23T01:34:28,476 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-08-23T01:34:28,476 !! 2026-08-23T01:34:28,477 ******************************************************************************** 2026-08-23T01:34:28,478 Please avoid running ``setup.py`` directly. 2026-08-23T01:34:28,478 Instead, use pypa/build, pypa/installer or other 2026-08-23T01:34:28,478 standards-based tools. 2026-08-23T01:34:28,479 This deprecation is overdue, please update your project and remove deprecated 2026-08-23T01:34:28,480 calls to avoid build errors in the future. 2026-08-23T01:34:28,481 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-08-23T01:34:28,481 ******************************************************************************** 2026-08-23T01:34:28,482 !! 2026-08-23T01:34:28,483 self.initialize_options() 2026-08-23T01:34:28,506 installing to build/bdist.linux-armv7l/wheel 2026-08-23T01:34:28,507 running install 2026-08-23T01:34:28,529 running install_lib 2026-08-23T01:34:28,558 creating build/bdist.linux-armv7l/wheel 2026-08-23T01:34:28,560 creating build/bdist.linux-armv7l/wheel/dendropy 2026-08-23T01:34:28,562 creating build/bdist.linux-armv7l/wheel/dendropy/interop 2026-08-23T01:34:28,563 copying build/lib/dendropy/interop/gbif.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,566 copying build/lib/dendropy/interop/raxml.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,569 copying build/lib/dendropy/interop/biopython.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,571 copying build/lib/dendropy/interop/ape.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,573 copying build/lib/dendropy/interop/muscle.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,575 copying build/lib/dendropy/interop/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,577 copying build/lib/dendropy/interop/entrez.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,579 copying build/lib/dendropy/interop/rstats.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,581 copying build/lib/dendropy/interop/rspr.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,583 copying build/lib/dendropy/interop/ete.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,585 copying build/lib/dendropy/interop/genbank.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,588 copying build/lib/dendropy/interop/itol.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,590 copying build/lib/dendropy/interop/seqgen.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,593 copying build/lib/dendropy/interop/paup.py -> build/bdist.linux-armv7l/wheel/./dendropy/interop 2026-08-23T01:34:28,596 creating build/bdist.linux-armv7l/wheel/dendropy/application 2026-08-23T01:34:28,597 copying build/lib/dendropy/application/dendropy_format.py -> build/bdist.linux-armv7l/wheel/./dendropy/application 2026-08-23T01:34:28,600 copying build/lib/dendropy/application/sumtrees.py -> build/bdist.linux-armv7l/wheel/./dendropy/application 2026-08-23T01:34:28,604 copying build/lib/dendropy/application/sumlabels.py -> build/bdist.linux-armv7l/wheel/./dendropy/application 2026-08-23T01:34:28,607 copying build/lib/dendropy/application/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/application 2026-08-23T01:34:28,609 creating build/bdist.linux-armv7l/wheel/dendropy/utility 2026-08-23T01:34:28,610 copying build/lib/dendropy/utility/processio.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,612 copying build/lib/dendropy/utility/container.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,614 copying build/lib/dendropy/utility/textprocessing.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,617 copying build/lib/dendropy/utility/error.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,619 creating build/bdist.linux-armv7l/wheel/dendropy/utility/libexec 2026-08-23T01:34:28,620 copying build/lib/dendropy/utility/libexec/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility/libexec 2026-08-23T01:34:28,622 copying build/lib/dendropy/utility/messaging.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,624 copying build/lib/dendropy/utility/deprecate.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,626 copying build/lib/dendropy/utility/constants.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,628 copying build/lib/dendropy/utility/filesys.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,630 copying build/lib/dendropy/utility/vcsinfo.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,632 copying build/lib/dendropy/utility/timeprocessing.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,634 copying build/lib/dendropy/utility/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,636 copying build/lib/dendropy/utility/metavar.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,637 copying build/lib/dendropy/utility/bitprocessing.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,639 copying build/lib/dendropy/utility/urlio.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,641 copying build/lib/dendropy/utility/terminal.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,643 copying build/lib/dendropy/utility/debug.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,645 copying build/lib/dendropy/utility/bibtex.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,648 copying build/lib/dendropy/utility/cli.py -> build/bdist.linux-armv7l/wheel/./dendropy/utility 2026-08-23T01:34:28,651 copying build/lib/dendropy/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy 2026-08-23T01:34:28,654 creating build/bdist.linux-armv7l/wheel/dendropy/model 2026-08-23T01:34:28,655 copying build/lib/dendropy/model/birthdeath.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2026-08-23T01:34:28,658 copying build/lib/dendropy/model/protractedspeciation.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2026-08-23T01:34:28,662 copying build/lib/dendropy/model/continuous.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2026-08-23T01:34:28,664 copying build/lib/dendropy/model/coalescent.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2026-08-23T01:34:28,667 copying build/lib/dendropy/model/discrete.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2026-08-23T01:34:28,669 copying build/lib/dendropy/model/parsimony.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2026-08-23T01:34:28,672 copying build/lib/dendropy/model/multispeciescoalescent.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2026-08-23T01:34:28,675 copying build/lib/dendropy/model/reconcile.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2026-08-23T01:34:28,679 copying build/lib/dendropy/model/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2026-08-23T01:34:28,681 copying build/lib/dendropy/model/treeshape.py -> build/bdist.linux-armv7l/wheel/./dendropy/model 2026-08-23T01:34:28,683 creating build/bdist.linux-armv7l/wheel/dendropy/plot 2026-08-23T01:34:28,684 copying build/lib/dendropy/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/plot 2026-08-23T01:34:28,686 copying build/lib/dendropy/plot/tikzplot.py -> build/bdist.linux-armv7l/wheel/./dendropy/plot 2026-08-23T01:34:28,688 copying build/lib/dendropy/plot/asciiplot.py -> build/bdist.linux-armv7l/wheel/./dendropy/plot 2026-08-23T01:34:28,690 copying build/lib/dendropy/__main__.py -> build/bdist.linux-armv7l/wheel/./dendropy 2026-08-23T01:34:28,693 creating build/bdist.linux-armv7l/wheel/dendropy/calculate 2026-08-23T01:34:28,694 copying build/lib/dendropy/calculate/phylogeneticdistance.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,698 copying build/lib/dendropy/calculate/combinatorics.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,700 copying build/lib/dendropy/calculate/probability.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,702 copying build/lib/dendropy/calculate/profiledistance.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,704 copying build/lib/dendropy/calculate/popgenstat.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,707 copying build/lib/dendropy/calculate/statistics.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,709 copying build/lib/dendropy/calculate/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,711 copying build/lib/dendropy/calculate/treesum.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,713 copying build/lib/dendropy/calculate/treescore.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,715 copying build/lib/dendropy/calculate/treecompare.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,717 copying build/lib/dendropy/calculate/mathfn.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,719 copying build/lib/dendropy/calculate/treemeasure.py -> build/bdist.linux-armv7l/wheel/./dendropy/calculate 2026-08-23T01:34:28,722 creating build/bdist.linux-armv7l/wheel/dendropy/legacy 2026-08-23T01:34:28,723 copying build/lib/dendropy/legacy/continuous.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,725 copying build/lib/dendropy/legacy/treecalc.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,727 copying build/lib/dendropy/legacy/coalescent.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,729 copying build/lib/dendropy/legacy/treemanip.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,731 copying build/lib/dendropy/legacy/popgenstat.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,733 copying build/lib/dendropy/legacy/reconcile.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,735 copying build/lib/dendropy/legacy/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,737 copying build/lib/dendropy/legacy/seqsim.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,739 copying build/lib/dendropy/legacy/ncbi.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,741 copying build/lib/dendropy/legacy/popgensim.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,743 copying build/lib/dendropy/legacy/seqmodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,745 copying build/lib/dendropy/legacy/treesim.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,747 copying build/lib/dendropy/legacy/treesum.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,749 copying build/lib/dendropy/legacy/treesplit.py -> build/bdist.linux-armv7l/wheel/./dendropy/legacy 2026-08-23T01:34:28,752 creating build/bdist.linux-armv7l/wheel/dendropy/mathlib 2026-08-23T01:34:28,753 copying build/lib/dendropy/mathlib/probability.py -> build/bdist.linux-armv7l/wheel/./dendropy/mathlib 2026-08-23T01:34:28,755 copying build/lib/dendropy/mathlib/statistics.py -> build/bdist.linux-armv7l/wheel/./dendropy/mathlib 2026-08-23T01:34:28,757 copying build/lib/dendropy/mathlib/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/mathlib 2026-08-23T01:34:28,758 copying build/lib/dendropy/mathlib/mathfn.py -> build/bdist.linux-armv7l/wheel/./dendropy/mathlib 2026-08-23T01:34:28,761 creating build/bdist.linux-armv7l/wheel/dendropy/dataio 2026-08-23T01:34:28,762 copying build/lib/dendropy/dataio/multiphylipreader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,764 copying build/lib/dendropy/dataio/nexuswriter.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,766 copying build/lib/dendropy/dataio/newick.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,768 copying build/lib/dendropy/dataio/newickreader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,771 copying build/lib/dendropy/dataio/phylipreader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,773 copying build/lib/dendropy/dataio/fastawriter.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,775 copying build/lib/dendropy/dataio/nexusreader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,779 copying build/lib/dendropy/dataio/newickyielder.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,781 copying build/lib/dendropy/dataio/phylipwriter.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,783 copying build/lib/dendropy/dataio/nexmlwriter.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,786 copying build/lib/dendropy/dataio/nexmlyielder.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,788 copying build/lib/dendropy/dataio/tokenizer.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,790 copying build/lib/dendropy/dataio/nexusprocessing.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,793 copying build/lib/dendropy/dataio/ioservice.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,795 copying build/lib/dendropy/dataio/newickwriter.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,798 copying build/lib/dendropy/dataio/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,800 copying build/lib/dendropy/dataio/xmlprocessing.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,802 copying build/lib/dendropy/dataio/nexusyielder.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,805 copying build/lib/dendropy/dataio/fastareader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,807 copying build/lib/dendropy/dataio/nexmlreader.py -> build/bdist.linux-armv7l/wheel/./dendropy/dataio 2026-08-23T01:34:28,810 creating build/bdist.linux-armv7l/wheel/dendropy/datamodel 2026-08-23T01:34:28,811 copying build/lib/dendropy/datamodel/basemodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2026-08-23T01:34:28,815 copying build/lib/dendropy/datamodel/taxonmodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2026-08-23T01:34:28,819 copying build/lib/dendropy/datamodel/charstatemodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2026-08-23T01:34:28,823 copying build/lib/dendropy/datamodel/datasetmodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2026-08-23T01:34:28,826 copying build/lib/dendropy/datamodel/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2026-08-23T01:34:28,828 creating build/bdist.linux-armv7l/wheel/dendropy/datamodel/treemodel 2026-08-23T01:34:28,829 copying build/lib/dendropy/datamodel/treemodel/_edge.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel/treemodel 2026-08-23T01:34:28,831 copying build/lib/dendropy/datamodel/treemodel/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel/treemodel 2026-08-23T01:34:28,833 copying build/lib/dendropy/datamodel/treemodel/_node.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel/treemodel 2026-08-23T01:34:28,837 copying build/lib/dendropy/datamodel/treemodel/_bipartition.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel/treemodel 2026-08-23T01:34:28,839 copying build/lib/dendropy/datamodel/treemodel/_tree.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel/treemodel 2026-08-23T01:34:28,844 copying build/lib/dendropy/datamodel/treecollectionmodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2026-08-23T01:34:28,848 copying build/lib/dendropy/datamodel/charmatrixmodel.py -> build/bdist.linux-armv7l/wheel/./dendropy/datamodel 2026-08-23T01:34:28,852 creating build/bdist.linux-armv7l/wheel/dendropy/simulate 2026-08-23T01:34:28,853 copying build/lib/dendropy/simulate/charsim.py -> build/bdist.linux-armv7l/wheel/./dendropy/simulate 2026-08-23T01:34:28,855 copying build/lib/dendropy/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./dendropy/simulate 2026-08-23T01:34:28,857 copying build/lib/dendropy/simulate/popgensim.py -> build/bdist.linux-armv7l/wheel/./dendropy/simulate 2026-08-23T01:34:28,859 copying build/lib/dendropy/simulate/treesim.py -> build/bdist.linux-armv7l/wheel/./dendropy/simulate 2026-08-23T01:34:28,861 running install_egg_info 2026-08-23T01:34:28,893 Copying src/DendroPy.egg-info to build/bdist.linux-armv7l/wheel/./DendroPy-5.0.13-py3.11.egg-info 2026-08-23T01:34:28,907 running install_scripts 2026-08-23T01:34:28,925 creating build/bdist.linux-armv7l/wheel/dendropy-5.0.13.dist-info/WHEEL 2026-08-23T01:34:28,927 creating '/tmp/pip-wheel-ju7y4rcs/dendropy-5.0.13-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-08-23T01:34:28,930 adding 'dendropy/__init__.py' 2026-08-23T01:34:28,932 adding 'dendropy/__main__.py' 2026-08-23T01:34:28,933 adding 'dendropy/application/__init__.py' 2026-08-23T01:34:28,935 adding 'dendropy/application/dendropy_format.py' 2026-08-23T01:34:28,937 adding 'dendropy/application/sumlabels.py' 2026-08-23T01:34:28,948 adding 'dendropy/application/sumtrees.py' 2026-08-23T01:34:28,950 adding 'dendropy/calculate/__init__.py' 2026-08-23T01:34:28,952 adding 'dendropy/calculate/combinatorics.py' 2026-08-23T01:34:28,953 adding 'dendropy/calculate/mathfn.py' 2026-08-23T01:34:28,959 adding 'dendropy/calculate/phylogeneticdistance.py' 2026-08-23T01:34:28,962 adding 'dendropy/calculate/popgenstat.py' 2026-08-23T01:34:28,964 adding 'dendropy/calculate/probability.py' 2026-08-23T01:34:28,966 adding 'dendropy/calculate/profiledistance.py' 2026-08-23T01:34:28,969 adding 'dendropy/calculate/statistics.py' 2026-08-23T01:34:28,972 adding 'dendropy/calculate/treecompare.py' 2026-08-23T01:34:28,974 adding 'dendropy/calculate/treemeasure.py' 2026-08-23T01:34:28,976 adding 'dendropy/calculate/treescore.py' 2026-08-23T01:34:28,978 adding 'dendropy/calculate/treesum.py' 2026-08-23T01:34:28,980 adding 'dendropy/dataio/__init__.py' 2026-08-23T01:34:28,982 adding 'dendropy/dataio/fastareader.py' 2026-08-23T01:34:28,983 adding 'dendropy/dataio/fastawriter.py' 2026-08-23T01:34:28,986 adding 'dendropy/dataio/ioservice.py' 2026-08-23T01:34:28,987 adding 'dendropy/dataio/multiphylipreader.py' 2026-08-23T01:34:28,988 adding 'dendropy/dataio/newick.py' 2026-08-23T01:34:28,992 adding 'dendropy/dataio/newickreader.py' 2026-08-23T01:34:28,995 adding 'dendropy/dataio/newickwriter.py' 2026-08-23T01:34:28,996 adding 'dendropy/dataio/newickyielder.py' 2026-08-23T01:34:29,001 adding 'dendropy/dataio/nexmlreader.py' 2026-08-23T01:34:29,004 adding 'dendropy/dataio/nexmlwriter.py' 2026-08-23T01:34:29,006 adding 'dendropy/dataio/nexmlyielder.py' 2026-08-23T01:34:29,008 adding 'dendropy/dataio/nexusprocessing.py' 2026-08-23T01:34:29,015 adding 'dendropy/dataio/nexusreader.py' 2026-08-23T01:34:29,018 adding 'dendropy/dataio/nexuswriter.py' 2026-08-23T01:34:29,020 adding 'dendropy/dataio/nexusyielder.py' 2026-08-23T01:34:29,022 adding 'dendropy/dataio/phylipreader.py' 2026-08-23T01:34:29,023 adding 'dendropy/dataio/phylipwriter.py' 2026-08-23T01:34:29,025 adding 'dendropy/dataio/tokenizer.py' 2026-08-23T01:34:29,026 adding 'dendropy/dataio/xmlprocessing.py' 2026-08-23T01:34:29,028 adding 'dendropy/datamodel/__init__.py' 2026-08-23T01:34:29,034 adding 'dendropy/datamodel/basemodel.py' 2026-08-23T01:34:29,043 adding 'dendropy/datamodel/charmatrixmodel.py' 2026-08-23T01:34:29,048 adding 'dendropy/datamodel/charstatemodel.py' 2026-08-23T01:34:29,052 adding 'dendropy/datamodel/datasetmodel.py' 2026-08-23T01:34:29,060 adding 'dendropy/datamodel/taxonmodel.py' 2026-08-23T01:34:29,073 adding 'dendropy/datamodel/treecollectionmodel.py' 2026-08-23T01:34:29,076 adding 'dendropy/datamodel/treemodel/__init__.py' 2026-08-23T01:34:29,079 adding 'dendropy/datamodel/treemodel/_bipartition.py' 2026-08-23T01:34:29,080 adding 'dendropy/datamodel/treemodel/_edge.py' 2026-08-23T01:34:29,087 adding 'dendropy/datamodel/treemodel/_node.py' 2026-08-23T01:34:29,105 adding 'dendropy/datamodel/treemodel/_tree.py' 2026-08-23T01:34:29,108 adding 'dendropy/interop/__init__.py' 2026-08-23T01:34:29,110 adding 'dendropy/interop/ape.py' 2026-08-23T01:34:29,111 adding 'dendropy/interop/biopython.py' 2026-08-23T01:34:29,112 adding 'dendropy/interop/entrez.py' 2026-08-23T01:34:29,114 adding 'dendropy/interop/ete.py' 2026-08-23T01:34:29,116 adding 'dendropy/interop/gbif.py' 2026-08-23T01:34:29,119 adding 'dendropy/interop/genbank.py' 2026-08-23T01:34:29,121 adding 'dendropy/interop/itol.py' 2026-08-23T01:34:29,123 adding 'dendropy/interop/muscle.py' 2026-08-23T01:34:29,127 adding 'dendropy/interop/paup.py' 2026-08-23T01:34:29,131 adding 'dendropy/interop/raxml.py' 2026-08-23T01:34:29,133 adding 'dendropy/interop/rspr.py' 2026-08-23T01:34:29,134 adding 'dendropy/interop/rstats.py' 2026-08-23T01:34:29,136 adding 'dendropy/interop/seqgen.py' 2026-08-23T01:34:29,138 adding 'dendropy/legacy/__init__.py' 2026-08-23T01:34:29,140 adding 'dendropy/legacy/coalescent.py' 2026-08-23T01:34:29,141 adding 'dendropy/legacy/continuous.py' 2026-08-23T01:34:29,143 adding 'dendropy/legacy/ncbi.py' 2026-08-23T01:34:29,144 adding 'dendropy/legacy/popgensim.py' 2026-08-23T01:34:29,146 adding 'dendropy/legacy/popgenstat.py' 2026-08-23T01:34:29,147 adding 'dendropy/legacy/reconcile.py' 2026-08-23T01:34:29,148 adding 'dendropy/legacy/seqmodel.py' 2026-08-23T01:34:29,150 adding 'dendropy/legacy/seqsim.py' 2026-08-23T01:34:29,151 adding 'dendropy/legacy/treecalc.py' 2026-08-23T01:34:29,152 adding 'dendropy/legacy/treemanip.py' 2026-08-23T01:34:29,154 adding 'dendropy/legacy/treesim.py' 2026-08-23T01:34:29,155 adding 'dendropy/legacy/treesplit.py' 2026-08-23T01:34:29,157 adding 'dendropy/legacy/treesum.py' 2026-08-23T01:34:29,158 adding 'dendropy/mathlib/__init__.py' 2026-08-23T01:34:29,160 adding 'dendropy/mathlib/mathfn.py' 2026-08-23T01:34:29,161 adding 'dendropy/mathlib/probability.py' 2026-08-23T01:34:29,162 adding 'dendropy/mathlib/statistics.py' 2026-08-23T01:34:29,164 adding 'dendropy/model/__init__.py' 2026-08-23T01:34:29,171 adding 'dendropy/model/birthdeath.py' 2026-08-23T01:34:29,176 adding 'dendropy/model/coalescent.py' 2026-08-23T01:34:29,179 adding 'dendropy/model/continuous.py' 2026-08-23T01:34:29,182 adding 'dendropy/model/discrete.py' 2026-08-23T01:34:29,184 adding 'dendropy/model/multispeciescoalescent.py' 2026-08-23T01:34:29,187 adding 'dendropy/model/parsimony.py' 2026-08-23T01:34:29,191 adding 'dendropy/model/protractedspeciation.py' 2026-08-23T01:34:29,194 adding 'dendropy/model/reconcile.py' 2026-08-23T01:34:29,196 adding 'dendropy/model/treeshape.py' 2026-08-23T01:34:29,197 adding 'dendropy/plot/__init__.py' 2026-08-23T01:34:29,199 adding 'dendropy/plot/asciiplot.py' 2026-08-23T01:34:29,201 adding 'dendropy/plot/tikzplot.py' 2026-08-23T01:34:29,203 adding 'dendropy/simulate/__init__.py' 2026-08-23T01:34:29,204 adding 'dendropy/simulate/charsim.py' 2026-08-23T01:34:29,206 adding 'dendropy/simulate/popgensim.py' 2026-08-23T01:34:29,207 adding 'dendropy/simulate/treesim.py' 2026-08-23T01:34:29,209 adding 'dendropy/utility/__init__.py' 2026-08-23T01:34:29,211 adding 'dendropy/utility/bibtex.py' 2026-08-23T01:34:29,213 adding 'dendropy/utility/bitprocessing.py' 2026-08-23T01:34:29,214 adding 'dendropy/utility/cli.py' 2026-08-23T01:34:29,216 adding 'dendropy/utility/constants.py' 2026-08-23T01:34:29,221 adding 'dendropy/utility/container.py' 2026-08-23T01:34:29,222 adding 'dendropy/utility/debug.py' 2026-08-23T01:34:29,224 adding 'dendropy/utility/deprecate.py' 2026-08-23T01:34:29,225 adding 'dendropy/utility/error.py' 2026-08-23T01:34:29,227 adding 'dendropy/utility/filesys.py' 2026-08-23T01:34:29,229 adding 'dendropy/utility/messaging.py' 2026-08-23T01:34:29,230 adding 'dendropy/utility/metavar.py' 2026-08-23T01:34:29,232 adding 'dendropy/utility/processio.py' 2026-08-23T01:34:29,233 adding 'dendropy/utility/terminal.py' 2026-08-23T01:34:29,235 adding 'dendropy/utility/textprocessing.py' 2026-08-23T01:34:29,236 adding 'dendropy/utility/timeprocessing.py' 2026-08-23T01:34:29,237 adding 'dendropy/utility/urlio.py' 2026-08-23T01:34:29,239 adding 'dendropy/utility/vcsinfo.py' 2026-08-23T01:34:29,241 adding 'dendropy/utility/libexec/__init__.py' 2026-08-23T01:34:29,243 adding 'dendropy-5.0.13.dist-info/licenses/AUTHORS.rst' 2026-08-23T01:34:29,245 adding 'dendropy-5.0.13.dist-info/licenses/LICENSE.rst' 2026-08-23T01:34:29,246 adding 'dendropy-5.0.13.dist-info/licenses/NOTICES.rst' 2026-08-23T01:34:29,248 adding 'dendropy-5.0.13.dist-info/METADATA' 2026-08-23T01:34:29,249 adding 'dendropy-5.0.13.dist-info/WHEEL' 2026-08-23T01:34:29,250 adding 'dendropy-5.0.13.dist-info/entry_points.txt' 2026-08-23T01:34:29,251 adding 'dendropy-5.0.13.dist-info/top_level.txt' 2026-08-23T01:34:29,251 adding 'dendropy-5.0.13.dist-info/zip-safe' 2026-08-23T01:34:29,254 adding 'dendropy-5.0.13.dist-info/RECORD' 2026-08-23T01:34:29,262 removing build/bdist.linux-armv7l/wheel 2026-08-23T01:34:29,407 Building wheel for dendropy (setup.py): finished with status 'done' 2026-08-23T01:34:29,415 Created wheel for dendropy: filename=dendropy-5.0.13-py3-none-any.whl size=465568 sha256=8785c71db8252afe59936d960c5b552443abc4d11584b72830bf52191d9dcfd6 2026-08-23T01:34:29,416 Stored in directory: /tmp/pip-ephem-wheel-cache-4e71e0h_/wheels/b2/e7/f5/80a075dd6f665fdeab456ea86414e040ddd84f45fcec8312a0 2026-08-23T01:34:29,432 Successfully built dendropy 2026-08-23T01:34:29,448 Removed build tracker: '/tmp/pip-build-tracker-rrnlirsp'