2026-08-28T14:38:15,506 Created temporary directory: /tmp/pip-ephem-wheel-cache-3zztxc0z 2026-08-28T14:38:15,508 Created temporary directory: /tmp/pip-build-tracker-c72jdmih 2026-08-28T14:38:15,508 Initialized build tracking at /tmp/pip-build-tracker-c72jdmih 2026-08-28T14:38:15,509 Created build tracker: /tmp/pip-build-tracker-c72jdmih 2026-08-28T14:38:15,509 Entered build tracker: /tmp/pip-build-tracker-c72jdmih 2026-08-28T14:38:15,510 Created temporary directory: /tmp/pip-wheel-bxq0enwq 2026-08-28T14:38:15,513 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-28T14:38:15,516 Created temporary directory: /tmp/pip-ephem-wheel-cache-12idf8vp 2026-08-28T14:38:15,540 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-28T14:38:15,544 2 location(s) to search for versions of ga4gh-va-spec: 2026-08-28T14:38:15,544 * https://pypi.org/simple/ga4gh-va-spec/ 2026-08-28T14:38:15,544 * https://www.piwheels.org/simple/ga4gh-va-spec/ 2026-08-28T14:38:15,545 Fetching project page and analyzing links: https://pypi.org/simple/ga4gh-va-spec/ 2026-08-28T14:38:15,545 Getting page https://pypi.org/simple/ga4gh-va-spec/ 2026-08-28T14:38:15,547 Found index url https://pypi.org/simple 2026-08-28T14:38:15,774 Fetched page https://pypi.org/simple/ga4gh-va-spec/ as application/vnd.pypi.simple.v1+json 2026-08-28T14:38:15,781 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/19/98/0193ba36702117528036d926ba45cf6beb685559daa837d61ec405aecde5/ga4gh.va_spec-0.1.0-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,782 Found link https://files.pythonhosted.org/packages/59/ce/80bef5bf8c614460c6522b70f44bf4c528ba470df639db9bac5abe2c2635/ga4gh_va_spec-0.1.0.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.1.0 2026-08-28T14:38:15,783 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/6a/42/4d11ff68e3f45f711aea3dc2bcfdef91ef62e27ae2df3f3c16eaca9d467d/ga4gh.va_spec-0.1.1-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,784 Found link https://files.pythonhosted.org/packages/8c/93/94b7b559972f512bc6e181102358753d9b9b113340fafc4af78bb4999a7a/ga4gh_va_spec-0.1.1.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.1.1 2026-08-28T14:38:15,784 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/66/2e/d59a5a5367cb45f0fe81220079b7c152585430b97d68dbe4dd049cf80e93/ga4gh.va_spec-0.2.0a0-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,785 Found link https://files.pythonhosted.org/packages/89/49/758a7a77a683ec127d4d7fffa5081bbc7b10ddc959af0f4622c81c74f617/ga4gh_va_spec-0.2.0a0.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.2.0a0 2026-08-28T14:38:15,786 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/09/e5/e7686769b6ffa2cdc6d285a48088a929e9c1e73f031099f4dec7c8ab98a1/ga4gh_va_spec-0.2.0a1-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,787 Found link 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(from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,791 Found link https://files.pythonhosted.org/packages/6b/aa/921c10ce7c771772f8a6730666e75fea541c2eaadf6ada14e1716bb707ba/ga4gh_va_spec-0.3.0.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.3.0 2026-08-28T14:38:15,791 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/ee/3d/091b7b151714e8d44b046f130fc40ab45bf6b8de1b394f7080914730a5eb/ga4gh_va_spec-0.4.0-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,792 Found link https://files.pythonhosted.org/packages/11/c5/cd5fc43c4dd8fa866ef1583b6bd266adbcf5649360815b90486ab189ac02/ga4gh_va_spec-0.4.0.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.4.0 2026-08-28T14:38:15,793 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/bd/32/ee457d5fd9f1500b40e9f1a6e9e2c7bb11adb9c6ffe13f4083e6687b456e/ga4gh_va_spec-0.4.1-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,793 Found link https://files.pythonhosted.org/packages/66/a2/19f6e3f88341956dd5a4e486799a3222566b4c74145f32f7f18f04e84612/ga4gh_va_spec-0.4.1.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.4.1 2026-08-28T14:38:15,794 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/8f/56/30ec07f32b9ea08f13fd03dc60dbcbaa45cdc26c9a62945cb08a0d8316f7/ga4gh_va_spec-0.4.2-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,795 Found link https://files.pythonhosted.org/packages/fd/f1/aa7f0d9b9be6a25b4b97099d519f08602883bcaf6ded0a9c643d8629522e/ga4gh_va_spec-0.4.2.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.4.2 2026-08-28T14:38:15,796 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/93/9f/5bcd71b216a7d88d4c90f9ef92072b62bc2a0b7a2bf38aa6c5e76df53168/ga4gh_va_spec-0.4.3-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,797 Found link https://files.pythonhosted.org/packages/87/5f/63c6dcfff61b9676c3ca999ed547f09c6f6262975b2d931919f8a33d104d/ga4gh_va_spec-0.4.3.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.4.3 2026-08-28T14:38:15,797 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/cc/4e/c889e3eff92753c179134416c5dbc388e7e6f4c5983b11a3065f070e72a9/ga4gh_va_spec-0.4.4-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,798 Found link 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https://files.pythonhosted.org/packages/9d/a9/44b2add68585239ed7a81e64f9484b616bc4bcbbc0664211a8c08e17b4b5/ga4gh_va_spec-0.5.0a1-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,802 Found link https://files.pythonhosted.org/packages/c3/21/0bd5c24554dd9f99cda7099baf6921a2b23bf59c8cc228f27f94b844b5e3/ga4gh_va_spec-0.5.0a1.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.5.0a1 2026-08-28T14:38:15,802 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/c4/a4/7e0d25b73c313cd70d51b3e7b537a31715d82e80d6ecc32694ce22b4bba7/ga4gh_va_spec-0.5.0a2-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,803 Found link https://files.pythonhosted.org/packages/41/bd/6eb49ab513b899a96223a417e539c0078b658f14809150de475123b325cf/ga4gh_va_spec-0.5.0a2.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.5.0a2 2026-08-28T14:38:15,804 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/26/c9/f52cca4a1c28825cb57876792c3f3a0b28f4c81fc23ed30749fa2a2a496d/ga4gh_va_spec-0.5.0a3-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,804 Found link https://files.pythonhosted.org/packages/5d/e2/b4e23182ed1d389662118dd6e612f7208db2d5d5ff4e70823b501cecaf09/ga4gh_va_spec-0.5.0a3.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.5.0a3 2026-08-28T14:38:15,805 Skipping link: No binaries permitted for ga4gh-va-spec: https://files.pythonhosted.org/packages/88/b3/e2f9f9bb3c70d802ec3613ff835820ce06ced5ad98abda49ab105742ae7d/ga4gh_va_spec-0.5.0a4-py3-none-any.whl (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,806 Found link https://files.pythonhosted.org/packages/9c/e4/15a0dbad1797859a724c19dc1300b78723dc3f283835c71ea54749d06f87/ga4gh_va_spec-0.5.0a4.tar.gz (from https://pypi.org/simple/ga4gh-va-spec/) (requires-python:>=3.10), version: 0.5.0a4 2026-08-28T14:38:15,807 Fetching project page and analyzing links: https://www.piwheels.org/simple/ga4gh-va-spec/ 2026-08-28T14:38:15,807 Getting page https://www.piwheels.org/simple/ga4gh-va-spec/ 2026-08-28T14:38:15,809 Found index url https://www.piwheels.org/simple 2026-08-28T14:38:15,994 Fetched page https://www.piwheels.org/simple/ga4gh-va-spec/ as text/html 2026-08-28T14:38:15,998 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh_va_spec-0.5.0a3-py3-none-any.whl#sha256=b03ec648c5569c509c9fc6b49737fb046e928c89ab8aa22a99ed56ec9ea72416 (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:15,999 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh_va_spec-0.5.0a2-py3-none-any.whl#sha256=1e845a679624d4ff31c4ae8ec89faa48a4d13511971599af96bd5e249ab42d15 (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:16,000 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh_va_spec-0.5.0a1-py3-none-any.whl#sha256=2f112805f72e1d642b897f373e2481ffcc8aeda51f50b7894c2f61b27ff4fc08 (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:16,000 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh_va_spec-0.5.0a0-py3-none-any.whl#sha256=09d4bf679d12cebc4f1f35574b47e0b0a2d4744aabe14aabddeea818f959e317 (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:16,001 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh_va_spec-0.4.4-py3-none-any.whl#sha256=61630dd762d7eb1981ab216ab85144f5ce31d479990a7eb1757e2ee158baa2b2 (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:16,002 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh_va_spec-0.4.3-py3-none-any.whl#sha256=f87d7568e006ee4c7fd7fcd4969af3504b5dc5be1eccc6c8bd6ec5da208e5b53 (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:16,002 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh_va_spec-0.4.0-py3-none-any.whl#sha256=2b510909c18e5b0fa66bd1e8c7219caf4041013a6fce44b501983e397353a43d (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:16,003 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh_va_spec-0.2.0-py3-none-any.whl#sha256=56ca42b95d4e4abe9f2c82c471d09d7d57f81eb03cc9f074dcb40d92ae691c3c (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:16,003 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh_va_spec-0.2.0a1-py3-none-any.whl#sha256=433210b527d5e260b131efd5deea3441ab9c0295675d6aef60621f8729d53c01 (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:16,004 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh.va_spec-0.2.0a0-py3-none-any.whl#sha256=7b8f6e00b9a607843bec784da99ee486228f6cad96c7765b6a51299afb86d74b (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:16,004 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh.va_spec-0.1.1-py3-none-any.whl#sha256=6e274d2eced41895395ae3f0559c77094ad3eb07aed85f8efe833563b0f4dba9 (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:16,005 Skipping link: No binaries permitted for ga4gh-va-spec: https://archive1.piwheels.org/simple/ga4gh-va-spec/ga4gh.va_spec-0.1.0-py3-none-any.whl#sha256=9e9e02d89981f64141688a9f5ce0b38aaa4dd9b1bf45cb485496a0c4521f2491 (from https://www.piwheels.org/simple/ga4gh-va-spec/) (requires-python:>=3.10) 2026-08-28T14:38:16,005 Skipping link: not a file: https://www.piwheels.org/simple/ga4gh-va-spec/ 2026-08-28T14:38:16,006 Skipping link: not a file: https://pypi.org/simple/ga4gh-va-spec/ 2026-08-28T14:38:16,027 Given no hashes to check 1 links for project 'ga4gh-va-spec': discarding no candidates 2026-08-28T14:38:16,044 Collecting ga4gh-va-spec==0.5.0a4 2026-08-28T14:38:16,047 Created temporary directory: /tmp/pip-unpack-5qhtl2ml 2026-08-28T14:38:16,195 Downloading ga4gh_va_spec-0.5.0a4.tar.gz (53 kB) 2026-08-28T14:38:16,355 Added ga4gh-va-spec==0.5.0a4 from https://files.pythonhosted.org/packages/9c/e4/15a0dbad1797859a724c19dc1300b78723dc3f283835c71ea54749d06f87/ga4gh_va_spec-0.5.0a4.tar.gz to build tracker '/tmp/pip-build-tracker-c72jdmih' 2026-08-28T14:38:16,362 Created temporary directory: /tmp/pip-build-env-j2ysw7t9 2026-08-28T14:38:16,367 Installing build dependencies: started 2026-08-28T14:38:16,368 Running command pip subprocess to install build dependencies 2026-08-28T14:38:17,719 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-08-28T14:38:18,190 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-28T14:38:18,214 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-28T14:38:19,991 Collecting setuptools>=65.3 2026-08-28T14:38:19,992 Obtaining dependency information for setuptools>=65.3 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-08-28T14:38:20,049 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-08-28T14:38:20,401 Collecting setuptools_scm>=8 2026-08-28T14:38:20,403 Obtaining dependency information for setuptools_scm>=8 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl.metadata 2026-08-28T14:38:20,429 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl.metadata (6.7 kB) 2026-08-28T14:38:20,439 Discarding https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl#sha256=d0d73d77ef634616b1e8635e900863683b792817c0fc3ffe3424e65482e089e6 (from https://www.piwheels.org/simple/setuptools-scm/) (requires-python:>=3.8): Requested setuptools_scm>=8 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.1-py3-none-any.whl#sha256=d0d73d77ef634616b1e8635e900863683b792817c0fc3ffe3424e65482e089e6 has inconsistent Name: expected 'setuptools_scm', but metadata has 'setuptools-scm' 2026-08-28T14:38:20,462 Using cached setuptools_scm-10.2.1-py3-none-any.whl (29 kB) 2026-08-28T14:38:20,573 Collecting vcs-versioning<3,>=2.0.0.dev0 2026-08-28T14:38:20,574 Obtaining dependency information for vcs-versioning<3,>=2.0.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.3.1-py3-none-any.whl.metadata 2026-08-28T14:38:20,587 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.3.1-py3-none-any.whl.metadata (1.7 kB) 2026-08-28T14:38:20,770 Collecting packaging>=20 2026-08-28T14:38:20,771 Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-08-28T14:38:20,784 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-08-28T14:38:21,019 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-08-28T14:38:21,042 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.3.1-py3-none-any.whl (114 kB) 2026-08-28T14:38:21,122 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-28T14:38:21,157 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-08-28T14:38:21,186 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.3.1-py3-none-any.whl (114 kB) 2026-08-28T14:38:21,262 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-28T14:38:24,035 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools_scm 2026-08-28T14:38:27,684 Creating /tmp/pip-build-env-j2ysw7t9/overlay/local/bin 2026-08-28T14:38:27,686 changing mode of /tmp/pip-build-env-j2ysw7t9/overlay/local/bin/vcs-versioning to 755 2026-08-28T14:38:27,831 changing mode of /tmp/pip-build-env-j2ysw7t9/overlay/local/bin/setuptools-scm to 755 2026-08-28T14:38:27,861 Successfully installed packaging-26.3 setuptools-84.0.0 setuptools_scm-10.2.1 vcs-versioning-2.3.1 2026-08-28T14:38:28,179 Installing build dependencies: finished with status 'done' 2026-08-28T14:38:28,185 Getting requirements to build wheel: started 2026-08-28T14:38:28,187 Running command Getting requirements to build wheel 2026-08-28T14:38:28,972 /tmp/pip-build-env-j2ysw7t9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-08-28T14:38:28,972 !! 2026-08-28T14:38:28,973 ******************************************************************************** 2026-08-28T14:38:28,974 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-08-28T14:38:28,976 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-08-28T14:38:28,976 or your builds will no longer be supported. 2026-08-28T14:38:28,977 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-28T14:38:28,977 ******************************************************************************** 2026-08-28T14:38:28,978 !! 2026-08-28T14:38:28,979 corresp(dist, value, root_dir) 2026-08-28T14:38:29,023 /tmp/pip-build-env-j2ysw7t9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-28T14:38:29,023 !! 2026-08-28T14:38:29,024 ******************************************************************************** 2026-08-28T14:38:29,025 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-28T14:38:29,026 License :: OSI Approved :: Apache Software License 2026-08-28T14:38:29,027 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-28T14:38:29,027 ******************************************************************************** 2026-08-28T14:38:29,028 !! 2026-08-28T14:38:29,029 dist._finalize_license_expression() 2026-08-28T14:38:29,030 /tmp/pip-build-env-j2ysw7t9/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-28T14:38:29,030 !! 2026-08-28T14:38:29,031 ******************************************************************************** 2026-08-28T14:38:29,032 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-28T14:38:29,033 License :: OSI Approved :: Apache Software License 2026-08-28T14:38:29,035 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-28T14:38:29,035 ******************************************************************************** 2026-08-28T14:38:29,036 !! 2026-08-28T14:38:29,037 self._finalize_license_expression() 2026-08-28T14:38:29,038 running egg_info 2026-08-28T14:38:29,038 writing src/ga4gh.va_spec.egg-info/PKG-INFO 2026-08-28T14:38:29,042 writing dependency_links to src/ga4gh.va_spec.egg-info/dependency_links.txt 2026-08-28T14:38:29,045 writing requirements to src/ga4gh.va_spec.egg-info/requires.txt 2026-08-28T14:38:29,046 writing top-level names to src/ga4gh.va_spec.egg-info/top_level.txt 2026-08-28T14:38:29,097 listing git files failed - pretending there aren't any 2026-08-28T14:38:29,105 reading manifest file 'src/ga4gh.va_spec.egg-info/SOURCES.txt' 2026-08-28T14:38:29,111 adding license file 'LICENSE' 2026-08-28T14:38:29,115 writing manifest file 'src/ga4gh.va_spec.egg-info/SOURCES.txt' 2026-08-28T14:38:29,224 Getting requirements to build wheel: finished with status 'done' 2026-08-28T14:38:29,228 Created temporary directory: /tmp/pip-modern-metadata-h15y0viq 2026-08-28T14:38:29,230 Preparing metadata (pyproject.toml): started 2026-08-28T14:38:29,231 Running command Preparing metadata (pyproject.toml) 2026-08-28T14:38:29,954 /tmp/pip-build-env-j2ysw7t9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-08-28T14:38:29,954 !! 2026-08-28T14:38:29,956 ******************************************************************************** 2026-08-28T14:38:29,956 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-08-28T14:38:29,958 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-08-28T14:38:29,958 or your builds will no longer be supported. 2026-08-28T14:38:29,959 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-28T14:38:29,960 ******************************************************************************** 2026-08-28T14:38:29,960 !! 2026-08-28T14:38:29,961 corresp(dist, value, root_dir) 2026-08-28T14:38:30,005 /tmp/pip-build-env-j2ysw7t9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-28T14:38:30,005 !! 2026-08-28T14:38:30,006 ******************************************************************************** 2026-08-28T14:38:30,007 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-28T14:38:30,008 License :: OSI Approved :: Apache Software License 2026-08-28T14:38:30,009 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-28T14:38:30,010 ******************************************************************************** 2026-08-28T14:38:30,011 !! 2026-08-28T14:38:30,011 dist._finalize_license_expression() 2026-08-28T14:38:30,012 /tmp/pip-build-env-j2ysw7t9/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-28T14:38:30,012 !! 2026-08-28T14:38:30,013 ******************************************************************************** 2026-08-28T14:38:30,014 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-28T14:38:30,015 License :: OSI Approved :: Apache Software License 2026-08-28T14:38:30,016 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-28T14:38:30,017 ******************************************************************************** 2026-08-28T14:38:30,018 !! 2026-08-28T14:38:30,019 self._finalize_license_expression() 2026-08-28T14:38:30,019 running dist_info 2026-08-28T14:38:30,021 creating /tmp/pip-modern-metadata-h15y0viq/ga4gh.va_spec.egg-info 2026-08-28T14:38:30,029 writing /tmp/pip-modern-metadata-h15y0viq/ga4gh.va_spec.egg-info/PKG-INFO 2026-08-28T14:38:30,035 writing dependency_links to /tmp/pip-modern-metadata-h15y0viq/ga4gh.va_spec.egg-info/dependency_links.txt 2026-08-28T14:38:30,038 writing requirements to /tmp/pip-modern-metadata-h15y0viq/ga4gh.va_spec.egg-info/requires.txt 2026-08-28T14:38:30,039 writing top-level names to /tmp/pip-modern-metadata-h15y0viq/ga4gh.va_spec.egg-info/top_level.txt 2026-08-28T14:38:30,040 writing manifest file '/tmp/pip-modern-metadata-h15y0viq/ga4gh.va_spec.egg-info/SOURCES.txt' 2026-08-28T14:38:30,086 listing git files failed - pretending there aren't any 2026-08-28T14:38:30,094 reading manifest file '/tmp/pip-modern-metadata-h15y0viq/ga4gh.va_spec.egg-info/SOURCES.txt' 2026-08-28T14:38:30,096 adding license file 'LICENSE' 2026-08-28T14:38:30,099 writing manifest file '/tmp/pip-modern-metadata-h15y0viq/ga4gh.va_spec.egg-info/SOURCES.txt' 2026-08-28T14:38:30,100 creating '/tmp/pip-modern-metadata-h15y0viq/ga4gh_va_spec-0.5.0a4.dist-info' 2026-08-28T14:38:30,240 Preparing metadata (pyproject.toml): finished with status 'done' 2026-08-28T14:38:30,247 Source in /tmp/pip-wheel-bxq0enwq/ga4gh-va-spec_c90c7edb34f7494eb25dc2c80b24fb5b has version 0.5.0a4, which satisfies requirement ga4gh-va-spec==0.5.0a4 from https://files.pythonhosted.org/packages/9c/e4/15a0dbad1797859a724c19dc1300b78723dc3f283835c71ea54749d06f87/ga4gh_va_spec-0.5.0a4.tar.gz 2026-08-28T14:38:30,248 Removed ga4gh-va-spec==0.5.0a4 from https://files.pythonhosted.org/packages/9c/e4/15a0dbad1797859a724c19dc1300b78723dc3f283835c71ea54749d06f87/ga4gh_va_spec-0.5.0a4.tar.gz from build tracker '/tmp/pip-build-tracker-c72jdmih' 2026-08-28T14:38:30,259 Created temporary directory: /tmp/pip-unpack-y0wuxmod 2026-08-28T14:38:30,260 Building wheels for collected packages: ga4gh-va-spec 2026-08-28T14:38:30,264 Created temporary directory: /tmp/pip-wheel-z3jd9fa4 2026-08-28T14:38:30,265 Destination directory: /tmp/pip-wheel-z3jd9fa4 2026-08-28T14:38:30,267 Building wheel for ga4gh-va-spec (pyproject.toml): started 2026-08-28T14:38:30,268 Running command Building wheel for ga4gh-va-spec (pyproject.toml) 2026-08-28T14:38:30,971 /tmp/pip-build-env-j2ysw7t9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-08-28T14:38:30,971 !! 2026-08-28T14:38:30,972 ******************************************************************************** 2026-08-28T14:38:30,972 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-08-28T14:38:30,973 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-08-28T14:38:30,974 or your builds will no longer be supported. 2026-08-28T14:38:30,975 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-28T14:38:30,975 ******************************************************************************** 2026-08-28T14:38:30,976 !! 2026-08-28T14:38:30,977 corresp(dist, value, root_dir) 2026-08-28T14:38:31,016 /tmp/pip-build-env-j2ysw7t9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-28T14:38:31,017 !! 2026-08-28T14:38:31,018 ******************************************************************************** 2026-08-28T14:38:31,018 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-28T14:38:31,019 License :: OSI Approved :: Apache Software License 2026-08-28T14:38:31,020 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-28T14:38:31,021 ******************************************************************************** 2026-08-28T14:38:31,022 !! 2026-08-28T14:38:31,023 dist._finalize_license_expression() 2026-08-28T14:38:31,024 /tmp/pip-build-env-j2ysw7t9/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-28T14:38:31,024 !! 2026-08-28T14:38:31,025 ******************************************************************************** 2026-08-28T14:38:31,026 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-28T14:38:31,027 License :: OSI Approved :: Apache Software License 2026-08-28T14:38:31,028 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-28T14:38:31,029 ******************************************************************************** 2026-08-28T14:38:31,030 !! 2026-08-28T14:38:31,030 self._finalize_license_expression() 2026-08-28T14:38:31,031 running bdist_wheel 2026-08-28T14:38:31,048 running build 2026-08-28T14:38:31,049 running build_py 2026-08-28T14:38:31,051 creating build/lib/ga4gh/va_spec 2026-08-28T14:38:31,054 copying src/ga4gh/va_spec/metadata.py -> build/lib/ga4gh/va_spec 2026-08-28T14:38:31,056 copying src/ga4gh/va_spec/__init__.py -> build/lib/ga4gh/va_spec 2026-08-28T14:38:31,058 copying src/ga4gh/va_spec/version.py -> build/lib/ga4gh/va_spec 2026-08-28T14:38:31,060 creating build/lib/ga4gh/va_spec/acmg_2015 2026-08-28T14:38:31,061 copying src/ga4gh/va_spec/acmg_2015/metadata.py -> build/lib/ga4gh/va_spec/acmg_2015 2026-08-28T14:38:31,063 copying src/ga4gh/va_spec/acmg_2015/models.py -> build/lib/ga4gh/va_spec/acmg_2015 2026-08-28T14:38:31,066 copying src/ga4gh/va_spec/acmg_2015/__init__.py -> build/lib/ga4gh/va_spec/acmg_2015 2026-08-28T14:38:31,068 creating build/lib/ga4gh/va_spec/base 2026-08-28T14:38:31,069 copying src/ga4gh/va_spec/base/validators.py -> build/lib/ga4gh/va_spec/base 2026-08-28T14:38:31,071 copying src/ga4gh/va_spec/base/domain_entities.py -> build/lib/ga4gh/va_spec/base 2026-08-28T14:38:31,073 copying src/ga4gh/va_spec/base/core.py -> build/lib/ga4gh/va_spec/base 2026-08-28T14:38:31,076 copying src/ga4gh/va_spec/base/metadata.py -> build/lib/ga4gh/va_spec/base 2026-08-28T14:38:31,078 copying src/ga4gh/va_spec/base/__init__.py -> build/lib/ga4gh/va_spec/base 2026-08-28T14:38:31,079 copying src/ga4gh/va_spec/base/enums.py -> build/lib/ga4gh/va_spec/base 2026-08-28T14:38:31,082 creating build/lib/ga4gh/va_spec/aac_2017 2026-08-28T14:38:31,083 copying src/ga4gh/va_spec/aac_2017/metadata.py -> build/lib/ga4gh/va_spec/aac_2017 2026-08-28T14:38:31,084 copying src/ga4gh/va_spec/aac_2017/models.py -> build/lib/ga4gh/va_spec/aac_2017 2026-08-28T14:38:31,087 copying src/ga4gh/va_spec/aac_2017/__init__.py -> build/lib/ga4gh/va_spec/aac_2017 2026-08-28T14:38:31,089 creating build/lib/ga4gh/va_spec/ccv_2022 2026-08-28T14:38:31,090 copying src/ga4gh/va_spec/ccv_2022/derived_evidence.py -> build/lib/ga4gh/va_spec/ccv_2022 2026-08-28T14:38:31,092 copying src/ga4gh/va_spec/ccv_2022/metadata.py -> build/lib/ga4gh/va_spec/ccv_2022 2026-08-28T14:38:31,094 copying src/ga4gh/va_spec/ccv_2022/models.py -> build/lib/ga4gh/va_spec/ccv_2022 2026-08-28T14:38:31,096 copying src/ga4gh/va_spec/ccv_2022/__init__.py -> build/lib/ga4gh/va_spec/ccv_2022 2026-08-28T14:38:31,098 running egg_info 2026-08-28T14:38:31,106 writing src/ga4gh.va_spec.egg-info/PKG-INFO 2026-08-28T14:38:31,111 writing dependency_links to src/ga4gh.va_spec.egg-info/dependency_links.txt 2026-08-28T14:38:31,113 writing requirements to src/ga4gh.va_spec.egg-info/requires.txt 2026-08-28T14:38:31,114 writing top-level names to src/ga4gh.va_spec.egg-info/top_level.txt 2026-08-28T14:38:31,150 listing git files failed - pretending there aren't any 2026-08-28T14:38:31,160 reading manifest file 'src/ga4gh.va_spec.egg-info/SOURCES.txt' 2026-08-28T14:38:31,164 adding license file 'LICENSE' 2026-08-28T14:38:31,168 writing manifest file 'src/ga4gh.va_spec.egg-info/SOURCES.txt' 2026-08-28T14:38:31,189 installing to build/bdist.linux-armv7l/wheel 2026-08-28T14:38:31,190 running install 2026-08-28T14:38:31,212 running install_lib 2026-08-28T14:38:31,221 creating build/bdist.linux-armv7l/wheel 2026-08-28T14:38:31,223 creating build/bdist.linux-armv7l/wheel/ga4gh 2026-08-28T14:38:31,225 creating build/bdist.linux-armv7l/wheel/ga4gh/va_spec 2026-08-28T14:38:31,226 creating build/bdist.linux-armv7l/wheel/ga4gh/va_spec/acmg_2015 2026-08-28T14:38:31,228 copying build/lib/ga4gh/va_spec/acmg_2015/metadata.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/acmg_2015 2026-08-28T14:38:31,230 copying build/lib/ga4gh/va_spec/acmg_2015/models.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/acmg_2015 2026-08-28T14:38:31,232 copying build/lib/ga4gh/va_spec/acmg_2015/__init__.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/acmg_2015 2026-08-28T14:38:31,234 copying build/lib/ga4gh/va_spec/metadata.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec 2026-08-28T14:38:31,236 creating build/bdist.linux-armv7l/wheel/ga4gh/va_spec/base 2026-08-28T14:38:31,237 copying build/lib/ga4gh/va_spec/base/validators.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/base 2026-08-28T14:38:31,240 copying build/lib/ga4gh/va_spec/base/domain_entities.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/base 2026-08-28T14:38:31,242 copying build/lib/ga4gh/va_spec/base/core.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/base 2026-08-28T14:38:31,244 copying build/lib/ga4gh/va_spec/base/metadata.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/base 2026-08-28T14:38:31,246 copying build/lib/ga4gh/va_spec/base/__init__.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/base 2026-08-28T14:38:31,248 copying build/lib/ga4gh/va_spec/base/enums.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/base 2026-08-28T14:38:31,251 creating build/bdist.linux-armv7l/wheel/ga4gh/va_spec/aac_2017 2026-08-28T14:38:31,252 copying build/lib/ga4gh/va_spec/aac_2017/metadata.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/aac_2017 2026-08-28T14:38:31,253 copying build/lib/ga4gh/va_spec/aac_2017/models.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/aac_2017 2026-08-28T14:38:31,256 copying build/lib/ga4gh/va_spec/aac_2017/__init__.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/aac_2017 2026-08-28T14:38:31,258 copying build/lib/ga4gh/va_spec/__init__.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec 2026-08-28T14:38:31,259 copying build/lib/ga4gh/va_spec/version.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec 2026-08-28T14:38:31,262 creating build/bdist.linux-armv7l/wheel/ga4gh/va_spec/ccv_2022 2026-08-28T14:38:31,263 copying build/lib/ga4gh/va_spec/ccv_2022/derived_evidence.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/ccv_2022 2026-08-28T14:38:31,265 copying build/lib/ga4gh/va_spec/ccv_2022/metadata.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/ccv_2022 2026-08-28T14:38:31,268 copying build/lib/ga4gh/va_spec/ccv_2022/models.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/ccv_2022 2026-08-28T14:38:31,270 copying build/lib/ga4gh/va_spec/ccv_2022/__init__.py -> build/bdist.linux-armv7l/wheel/./ga4gh/va_spec/ccv_2022 2026-08-28T14:38:31,272 running install_egg_info 2026-08-28T14:38:31,278 Copying src/ga4gh.va_spec.egg-info to build/bdist.linux-armv7l/wheel/./ga4gh.va_spec-0.5.0a4-py3.11.egg-info 2026-08-28T14:38:31,292 running install_scripts 2026-08-28T14:38:31,303 creating build/bdist.linux-armv7l/wheel/ga4gh_va_spec-0.5.0a4.dist-info/WHEEL 2026-08-28T14:38:31,306 creating '/tmp/pip-wheel-z3jd9fa4/.tmp-5yo0mfla/ga4gh_va_spec-0.5.0a4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-08-28T14:38:31,310 adding 'ga4gh/va_spec/__init__.py' 2026-08-28T14:38:31,311 adding 'ga4gh/va_spec/metadata.py' 2026-08-28T14:38:31,312 adding 'ga4gh/va_spec/version.py' 2026-08-28T14:38:31,314 adding 'ga4gh/va_spec/aac_2017/__init__.py' 2026-08-28T14:38:31,315 adding 'ga4gh/va_spec/aac_2017/metadata.py' 2026-08-28T14:38:31,317 adding 'ga4gh/va_spec/aac_2017/models.py' 2026-08-28T14:38:31,319 adding 'ga4gh/va_spec/acmg_2015/__init__.py' 2026-08-28T14:38:31,320 adding 'ga4gh/va_spec/acmg_2015/metadata.py' 2026-08-28T14:38:31,323 adding 'ga4gh/va_spec/acmg_2015/models.py' 2026-08-28T14:38:31,324 adding 'ga4gh/va_spec/base/__init__.py' 2026-08-28T14:38:31,328 adding 'ga4gh/va_spec/base/core.py' 2026-08-28T14:38:31,330 adding 'ga4gh/va_spec/base/domain_entities.py' 2026-08-28T14:38:31,331 adding 'ga4gh/va_spec/base/enums.py' 2026-08-28T14:38:31,332 adding 'ga4gh/va_spec/base/metadata.py' 2026-08-28T14:38:31,334 adding 'ga4gh/va_spec/base/validators.py' 2026-08-28T14:38:31,336 adding 'ga4gh/va_spec/ccv_2022/__init__.py' 2026-08-28T14:38:31,337 adding 'ga4gh/va_spec/ccv_2022/derived_evidence.py' 2026-08-28T14:38:31,339 adding 'ga4gh/va_spec/ccv_2022/metadata.py' 2026-08-28T14:38:31,341 adding 'ga4gh/va_spec/ccv_2022/models.py' 2026-08-28T14:38:31,344 adding 'ga4gh_va_spec-0.5.0a4.dist-info/licenses/LICENSE' 2026-08-28T14:38:31,347 adding 'ga4gh_va_spec-0.5.0a4.dist-info/METADATA' 2026-08-28T14:38:31,348 adding 'ga4gh_va_spec-0.5.0a4.dist-info/WHEEL' 2026-08-28T14:38:31,349 adding 'ga4gh_va_spec-0.5.0a4.dist-info/top_level.txt' 2026-08-28T14:38:31,350 adding 'ga4gh_va_spec-0.5.0a4.dist-info/RECORD' 2026-08-28T14:38:31,352 removing build/bdist.linux-armv7l/wheel 2026-08-28T14:38:31,469 Building wheel for ga4gh-va-spec (pyproject.toml): finished with status 'done' 2026-08-28T14:38:31,474 Created wheel for ga4gh-va-spec: filename=ga4gh_va_spec-0.5.0a4-py3-none-any.whl size=41031 sha256=a71f3644738280962ad7d202949772faf43ee03ec533f79831162bdf94c147ce 2026-08-28T14:38:31,475 Stored in directory: /tmp/pip-ephem-wheel-cache-12idf8vp/wheels/9f/31/1a/c92a032f9e213db8a07aee0f223e6aab22326feefbd76cab15 2026-08-28T14:38:31,494 Successfully built ga4gh-va-spec 2026-08-28T14:38:31,498 Removed build tracker: '/tmp/pip-build-tracker-c72jdmih'