2026-08-31T22:50:12,761 Created temporary directory: /tmp/pip-ephem-wheel-cache-ivo8sy7z 2026-08-31T22:50:12,765 Created temporary directory: /tmp/pip-build-tracker-8pp6gxc6 2026-08-31T22:50:12,766 Initialized build tracking at /tmp/pip-build-tracker-8pp6gxc6 2026-08-31T22:50:12,766 Created build tracker: /tmp/pip-build-tracker-8pp6gxc6 2026-08-31T22:50:12,767 Entered build tracker: /tmp/pip-build-tracker-8pp6gxc6 2026-08-31T22:50:12,768 Created temporary directory: /tmp/pip-wheel-py_mpwa1 2026-08-31T22:50:12,772 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-31T22:50:12,775 Created temporary directory: /tmp/pip-ephem-wheel-cache-pdm6w23x 2026-08-31T22:50:12,802 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-31T22:50:12,807 2 location(s) to search for versions of topiary: 2026-08-31T22:50:12,807 * https://pypi.org/simple/topiary/ 2026-08-31T22:50:12,807 * https://www.piwheels.org/simple/topiary/ 2026-08-31T22:50:12,808 Fetching project page and analyzing links: https://pypi.org/simple/topiary/ 2026-08-31T22:50:12,809 Getting page https://pypi.org/simple/topiary/ 2026-08-31T22:50:12,810 Found index url https://pypi.org/simple 2026-08-31T22:50:13,003 Fetched page https://pypi.org/simple/topiary/ as application/vnd.pypi.simple.v1+json 2026-08-31T22:50:13,037 Found link https://files.pythonhosted.org/packages/38/f6/60c60d77093e492c9a139a87514fa230296ca94080fec6d479f22bf5cfcd/topiary-0.0.0.tar.gz (from 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https://archive1.piwheels.org/simple/topiary/topiary-3.0.6-py3-none-any.whl#sha256=bbfaba8444095e39ed9ed8d14e7460f26f7c5d785e452bd44bcb533ef77fc8e4 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,576 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-3.0.2-py3-none-any.whl#sha256=8a9776d2965569019b41fbae3578df6ac218b66915ac8b5e209b73b7df1e4ac0 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,576 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-3.0.0-py3-none-any.whl#sha256=687e9928c772d363c854ecaf8e073eba63cbdaf8b974690d8f83f522fcd7723f (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,577 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-2.2.0-py3-none-any.whl#sha256=afb7b09b18f345de86420e8f1d61284c526a3bdcb0e352639c7383105203b2f9 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,578 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-2.1.0-py3-none-any.whl#sha256=6a54b133dc04b282ecb6254205dd09896a559c40a793a5470a1e8d77ed2244b1 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,578 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-2.0.0-py3-none-any.whl#sha256=bf376c02311efd5c80a0793be89ae4a34d82ab5397b5861dd664ce96d3e48a38 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,579 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-1.2.1-py3-none-any.whl#sha256=bc761dde043d0b6aa59153fc4cef4c3f4173d9cc2af622fc8263962c2fc21f0d (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,579 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-1.2.0-py3-none-any.whl#sha256=311e8283cb60ad0d52bad801d50774f6634e70f8998da593fb6bd3b2bc6ffa65 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,580 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.1.2-py3-none-any.whl#sha256=e7a1c96210356871a2273cd29f1899190e3ed5683d4a4572088cd945d1f5e758 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,581 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.1.0-py3-none-any.whl#sha256=46f5f6e4d2071e7711aa10d069defad14ffdf877b255780830a6cf6e42b61d5f (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,581 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.21-py3-none-any.whl#sha256=3983f7c3fbcff8c1a577833c364c6e99c1d98ac9955c3696439f59d8faa8eeda (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,582 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.20-py3-none-any.whl#sha256=3fb43551e5d6896e3e54f5a33a29922523c71c15b3849801206d04a8c4805350 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,583 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.19-py3-none-any.whl#sha256=0bdd9a0f991558f802326026fec79812c40392013a16fa27d697a9c37d0cf12c (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,583 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.18-py3-none-any.whl#sha256=9e812f2912a401afd7be2c4905413e0c158d97a57ddd49a478edb0b8d9805a28 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,584 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.17-py3-none-any.whl#sha256=9caa65a5a200720510e1c38a256ba0ee4702a443d0c0f9e56724aaa16b907517 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,585 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.16-py3-none-any.whl#sha256=1cce9bca3cbb426edd71bbf7bbd1c069b0498c46d67ce549315317b0f75ab1d6 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,586 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.15-py3-none-any.whl#sha256=ca5ae7481368a4fb5d839d1ac3cab6823cbebeb2733ef0e9c6b2275854eb895f (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,586 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.14-py3-none-any.whl#sha256=48e8744f89c7f03717c8e36a17ede28b495b845c7106cb5638c216db27054fad (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,587 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.13-py3-none-any.whl#sha256=588396661f87bea8be890d90c6800ac4825d06ae7db1c50c98a1978fe9c45bd3 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,587 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.10-py3-none-any.whl#sha256=56bea0cecf1273a44cd2e51ad294714c41e0fb7d9cc0b16382709573c4ec9443 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,588 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.9-py3-none-any.whl#sha256=da4dc4334fdf5cb89b68356e11737c8dab86fd100b9c7979e95eac3dc58fbd6d (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,589 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.8-py3-none-any.whl#sha256=12b4f283d8fbedbd316649be8833a17fee852097f1e5cd8963264e6c4a2721e0 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,589 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.7-py3-none-any.whl#sha256=6e23dbd38e19c12b658a8373b501f1e929c6fd3420749dee506a82b60b190d42 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,590 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.6-py3-none-any.whl#sha256=f3b597a0744c3a7540c3ffe571b8f4fad3d2ad40ddc6198952e2aee7c96ff82c (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,591 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.5-py3-none-any.whl#sha256=52f489eb5876b619e9988ee4c2fabec4df1a087c2f67f96cbb99ece92eb57576 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,591 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.4-py3-none-any.whl#sha256=5c94fb56e54399233efc5f88a6f6cfe2914773c5b2aa67a24f6ddf6089561b3b (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,592 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.3-py3-none-any.whl#sha256=197f9da38cd367d77acaec6282f0d22aefaf1e1ab6754379f671902958348f15 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,593 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.2-py3-none-any.whl#sha256=accaff90bafe6c929aece0f65b8ccedd45839064bf361d8f69bfefd543127ec2 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,593 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.1-py3-none-any.whl#sha256=6743a02aee34bc7567913bbe5c15a321924d9e1cb2c15f956e4ebb9b321707f4 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,594 Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.0-py3-none-any.whl#sha256=a4de4e13dc8561c43fd350094d3cbc3267e0faacf5e65b94501ef15affdf51e6 (from https://www.piwheels.org/simple/topiary/) 2026-08-31T22:50:13,595 Skipping link: not a file: https://www.piwheels.org/simple/topiary/ 2026-08-31T22:50:13,596 Skipping link: not a file: https://pypi.org/simple/topiary/ 2026-08-31T22:50:13,628 Given no hashes to check 1 links for project 'topiary': discarding no candidates 2026-08-31T22:50:13,648 Collecting topiary==5.34.0 2026-08-31T22:50:13,651 Created temporary directory: /tmp/pip-unpack-njfd_45a 2026-08-31T22:50:13,836 Downloading topiary-5.34.0.tar.gz (349 kB) 2026-08-31T22:50:14,256 Added topiary==5.34.0 from https://files.pythonhosted.org/packages/ef/4e/c873183d5f7be8d3660d3e1a4a553b53e149fc42eb6c44f072c1e68e8257/topiary-5.34.0.tar.gz to build tracker '/tmp/pip-build-tracker-8pp6gxc6' 2026-08-31T22:50:14,260 Created temporary directory: /tmp/pip-build-env-iwmx6mgl 2026-08-31T22:50:14,265 Installing build dependencies: started 2026-08-31T22:50:14,266 Running command pip subprocess to install build dependencies 2026-08-31T22:50:15,406 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-08-31T22:50:15,871 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-08-31T22:50:15,894 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-08-31T22:50:17,700 Collecting setuptools>=64 2026-08-31T22:50:17,701 Obtaining dependency information for setuptools>=64 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-08-31T22:50:17,716 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-08-31T22:50:17,976 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-31T22:50:18,068 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-08-31T22:50:20,799 Installing collected packages: setuptools 2026-08-31T22:50:23,041 Successfully installed setuptools-84.0.0 2026-08-31T22:50:23,313 Installing build dependencies: finished with status 'done' 2026-08-31T22:50:23,320 Getting requirements to build wheel: started 2026-08-31T22:50:23,321 Running command Getting requirements to build wheel 2026-08-31T22:50:24,025 /tmp/pip-build-env-iwmx6mgl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-31T22:50:24,026 !! 2026-08-31T22:50:24,027 ******************************************************************************** 2026-08-31T22:50:24,027 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-31T22:50:24,028 License :: OSI Approved :: Apache Software License 2026-08-31T22:50:24,029 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-31T22:50:24,030 ******************************************************************************** 2026-08-31T22:50:24,031 !! 2026-08-31T22:50:24,031 dist._finalize_license_expression() 2026-08-31T22:50:24,032 /tmp/pip-build-env-iwmx6mgl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-31T22:50:24,033 !! 2026-08-31T22:50:24,033 ******************************************************************************** 2026-08-31T22:50:24,034 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-31T22:50:24,035 License :: OSI Approved :: Apache Software License 2026-08-31T22:50:24,036 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-31T22:50:24,036 ******************************************************************************** 2026-08-31T22:50:24,037 !! 2026-08-31T22:50:24,038 self._finalize_license_expression() 2026-08-31T22:50:24,038 running egg_info 2026-08-31T22:50:24,044 writing topiary.egg-info/PKG-INFO 2026-08-31T22:50:24,047 writing dependency_links to topiary.egg-info/dependency_links.txt 2026-08-31T22:50:24,049 writing entry points to topiary.egg-info/entry_points.txt 2026-08-31T22:50:24,051 writing requirements to topiary.egg-info/requires.txt 2026-08-31T22:50:24,052 writing top-level names to topiary.egg-info/top_level.txt 2026-08-31T22:50:24,095 reading manifest file 'topiary.egg-info/SOURCES.txt' 2026-08-31T22:50:24,102 adding license file 'LICENSE' 2026-08-31T22:50:24,110 writing manifest file 'topiary.egg-info/SOURCES.txt' 2026-08-31T22:50:24,210 Getting requirements to build wheel: finished with status 'done' 2026-08-31T22:50:24,213 Created temporary directory: /tmp/pip-modern-metadata-kasbbcne 2026-08-31T22:50:24,216 Preparing metadata (pyproject.toml): started 2026-08-31T22:50:24,217 Running command Preparing metadata (pyproject.toml) 2026-08-31T22:50:24,875 /tmp/pip-build-env-iwmx6mgl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-31T22:50:24,875 !! 2026-08-31T22:50:24,877 ******************************************************************************** 2026-08-31T22:50:24,877 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-31T22:50:24,878 License :: OSI Approved :: Apache Software License 2026-08-31T22:50:24,879 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-31T22:50:24,880 ******************************************************************************** 2026-08-31T22:50:24,881 !! 2026-08-31T22:50:24,881 dist._finalize_license_expression() 2026-08-31T22:50:24,882 /tmp/pip-build-env-iwmx6mgl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-31T22:50:24,882 !! 2026-08-31T22:50:24,884 ******************************************************************************** 2026-08-31T22:50:24,884 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-31T22:50:24,885 License :: OSI Approved :: Apache Software License 2026-08-31T22:50:24,886 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-31T22:50:24,887 ******************************************************************************** 2026-08-31T22:50:24,888 !! 2026-08-31T22:50:24,889 self._finalize_license_expression() 2026-08-31T22:50:24,889 running dist_info 2026-08-31T22:50:24,897 creating /tmp/pip-modern-metadata-kasbbcne/topiary.egg-info 2026-08-31T22:50:24,898 writing /tmp/pip-modern-metadata-kasbbcne/topiary.egg-info/PKG-INFO 2026-08-31T22:50:24,902 writing dependency_links to /tmp/pip-modern-metadata-kasbbcne/topiary.egg-info/dependency_links.txt 2026-08-31T22:50:24,903 writing entry points to /tmp/pip-modern-metadata-kasbbcne/topiary.egg-info/entry_points.txt 2026-08-31T22:50:24,905 writing requirements to /tmp/pip-modern-metadata-kasbbcne/topiary.egg-info/requires.txt 2026-08-31T22:50:24,906 writing top-level names to /tmp/pip-modern-metadata-kasbbcne/topiary.egg-info/top_level.txt 2026-08-31T22:50:24,908 writing manifest file '/tmp/pip-modern-metadata-kasbbcne/topiary.egg-info/SOURCES.txt' 2026-08-31T22:50:24,935 reading manifest file '/tmp/pip-modern-metadata-kasbbcne/topiary.egg-info/SOURCES.txt' 2026-08-31T22:50:24,937 adding license file 'LICENSE' 2026-08-31T22:50:24,944 writing manifest file '/tmp/pip-modern-metadata-kasbbcne/topiary.egg-info/SOURCES.txt' 2026-08-31T22:50:24,945 creating '/tmp/pip-modern-metadata-kasbbcne/topiary-5.34.0.dist-info' 2026-08-31T22:50:25,072 Preparing metadata (pyproject.toml): finished with status 'done' 2026-08-31T22:50:25,078 Source in /tmp/pip-wheel-py_mpwa1/topiary_8205a43e3ea54fc1901daafbbb9ca98b has version 5.34.0, which satisfies requirement topiary==5.34.0 from https://files.pythonhosted.org/packages/ef/4e/c873183d5f7be8d3660d3e1a4a553b53e149fc42eb6c44f072c1e68e8257/topiary-5.34.0.tar.gz 2026-08-31T22:50:25,079 Removed topiary==5.34.0 from https://files.pythonhosted.org/packages/ef/4e/c873183d5f7be8d3660d3e1a4a553b53e149fc42eb6c44f072c1e68e8257/topiary-5.34.0.tar.gz from build tracker '/tmp/pip-build-tracker-8pp6gxc6' 2026-08-31T22:50:25,087 Created temporary directory: /tmp/pip-unpack-v8cr6qh5 2026-08-31T22:50:25,088 Building wheels for collected packages: topiary 2026-08-31T22:50:25,092 Created temporary directory: /tmp/pip-wheel-6y5o8y9j 2026-08-31T22:50:25,092 Destination directory: /tmp/pip-wheel-6y5o8y9j 2026-08-31T22:50:25,094 Building wheel for topiary (pyproject.toml): started 2026-08-31T22:50:25,096 Running command Building wheel for topiary (pyproject.toml) 2026-08-31T22:50:25,777 /tmp/pip-build-env-iwmx6mgl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-31T22:50:25,777 !! 2026-08-31T22:50:25,778 ******************************************************************************** 2026-08-31T22:50:25,779 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-31T22:50:25,780 License :: OSI Approved :: Apache Software License 2026-08-31T22:50:25,781 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-31T22:50:25,781 ******************************************************************************** 2026-08-31T22:50:25,782 !! 2026-08-31T22:50:25,783 dist._finalize_license_expression() 2026-08-31T22:50:25,783 /tmp/pip-build-env-iwmx6mgl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-08-31T22:50:25,784 !! 2026-08-31T22:50:25,785 ******************************************************************************** 2026-08-31T22:50:25,785 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-08-31T22:50:25,786 License :: OSI Approved :: Apache Software License 2026-08-31T22:50:25,787 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-08-31T22:50:25,788 ******************************************************************************** 2026-08-31T22:50:25,789 !! 2026-08-31T22:50:25,790 self._finalize_license_expression() 2026-08-31T22:50:25,790 running bdist_wheel 2026-08-31T22:50:25,803 running build 2026-08-31T22:50:25,804 running build_py 2026-08-31T22:50:25,811 creating build/lib/topiary 2026-08-31T22:50:25,813 copying topiary/wide.py -> build/lib/topiary 2026-08-31T22:50:25,816 copying topiary/io.py -> build/lib/topiary 2026-08-31T22:50:25,818 copying topiary/self_proteome.py -> build/lib/topiary 2026-08-31T22:50:25,823 copying topiary/io_lens.py -> build/lib/topiary 2026-08-31T22:50:25,826 copying topiary/cached.py -> build/lib/topiary 2026-08-31T22:50:25,831 copying topiary/properties.py -> build/lib/topiary 2026-08-31T22:50:25,833 copying topiary/protein_fragment.py -> build/lib/topiary 2026-08-31T22:50:25,836 copying topiary/io_pvacseq.py -> build/lib/topiary 2026-08-31T22:50:25,839 copying topiary/filters.py -> build/lib/topiary 2026-08-31T22:50:25,841 copying topiary/__init__.py -> build/lib/topiary 2026-08-31T22:50:25,844 copying topiary/predictor.py -> build/lib/topiary 2026-08-31T22:50:25,847 copying topiary/sources.py -> build/lib/topiary 2026-08-31T22:50:25,849 copying topiary/result.py -> build/lib/topiary 2026-08-31T22:50:25,852 copying topiary/inputs.py -> build/lib/topiary 2026-08-31T22:50:25,854 copying topiary/io_protein_fragment.py -> build/lib/topiary 2026-08-31T22:50:25,856 copying topiary/sequence_helpers.py -> build/lib/topiary 2026-08-31T22:50:25,860 creating build/lib/tests 2026-08-31T22:50:25,861 copying tests/test_kind_mhc_dependence.py -> build/lib/tests 2026-08-31T22:50:25,863 copying tests/test_wide.py -> build/lib/tests 2026-08-31T22:50:25,866 copying tests/test_cli_coverage.py -> build/lib/tests 2026-08-31T22:50:25,868 copying tests/test_absent_vs_empty_audit.py -> build/lib/tests 2026-08-31T22:50:25,870 copying tests/test_lens_versions.py -> build/lib/tests 2026-08-31T22:50:25,873 copying tests/test_load_cufflinks_fpkm.py -> build/lib/tests 2026-08-31T22:50:25,874 copying tests/test_io.py -> build/lib/tests 2026-08-31T22:50:25,877 copying tests/test_lens_multi_version.py -> build/lib/tests 2026-08-31T22:50:25,879 copying tests/test_protein_fragment.py -> build/lib/tests 2026-08-31T22:50:25,881 copying tests/test_mutant_epitope_predictions_class2.py -> build/lib/tests 2026-08-31T22:50:25,883 copying tests/test_self_proteome.py -> build/lib/tests 2026-08-31T22:50:25,886 copying tests/test_group_keys.py -> build/lib/tests 2026-08-31T22:50:25,888 copying tests/test_per_peptide_alleles.py -> build/lib/tests 2026-08-31T22:50:25,891 copying tests/common.py -> build/lib/tests 2026-08-31T22:50:25,892 copying tests/test_result.py -> build/lib/tests 2026-08-31T22:50:25,895 copying tests/test_ranking.py -> build/lib/tests 2026-08-31T22:50:25,899 copying tests/test_variant_expression_filters.py -> build/lib/tests 2026-08-31T22:50:25,901 copying tests/test_validation_and_edge_cases.py -> build/lib/tests 2026-08-31T22:50:25,903 copying tests/test_mutant_epitope_predictions_class1.py -> build/lib/tests 2026-08-31T22:50:25,905 copying tests/test_integration.py -> build/lib/tests 2026-08-31T22:50:25,907 copying tests/test_peptide_property_node.py -> build/lib/tests 2026-08-31T22:50:25,909 copying tests/test_self_nearest_population.py -> build/lib/tests 2026-08-31T22:50:25,912 copying tests/test_dataframe.py -> build/lib/tests 2026-08-31T22:50:25,914 copying tests/test_io_lens.py -> build/lib/tests 2026-08-31T22:50:25,916 copying tests/test_edge_case_fixtures.py -> build/lib/tests 2026-08-31T22:50:25,918 copying tests/test_load_stringtie_gtf_fpkm.py -> build/lib/tests 2026-08-31T22:50:25,920 copying tests/test_cli_script.py -> build/lib/tests 2026-08-31T22:50:25,922 copying tests/test_lazy_imports.py -> build/lib/tests 2026-08-31T22:50:25,925 copying tests/test_context_forwarding.py -> build/lib/tests 2026-08-31T22:50:25,930 copying tests/test_cli_ranking.py -> build/lib/tests 2026-08-31T22:50:25,934 copying tests/test_allele_class.py -> build/lib/tests 2026-08-31T22:50:25,938 copying tests/test_peptide_mutation_interval.py -> build/lib/tests 2026-08-31T22:50:25,941 copying tests/test_predictor_internals.py -> build/lib/tests 2026-08-31T22:50:25,952 copying tests/test_allele_free_kinds.py -> build/lib/tests 2026-08-31T22:50:25,955 copying tests/test_predict_from_variants_refactor.py -> build/lib/tests 2026-08-31T22:50:25,960 copying tests/test_direct_input_regressions.py -> build/lib/tests 2026-08-31T22:50:25,963 copying tests/test_fragment_evidence.py -> build/lib/tests 2026-08-31T22:50:25,967 copying tests/test_from_predictions.py -> build/lib/tests 2026-08-31T22:50:25,972 copying tests/test_padding.py -> build/lib/tests 2026-08-31T22:50:25,974 copying tests/test_sequence_helpers.py -> build/lib/tests 2026-08-31T22:50:25,977 copying tests/test_empty_and_collision_guards.py -> build/lib/tests 2026-08-31T22:50:25,981 copying tests/test_dsl_extensions.py -> build/lib/tests 2026-08-31T22:50:25,985 copying tests/test_cli_cached_predictor.py -> build/lib/tests 2026-08-31T22:50:25,987 copying tests/test_predict_from_fragments.py -> build/lib/tests 2026-08-31T22:50:25,990 copying tests/test_dsl_polish.py -> build/lib/tests 2026-08-31T22:50:25,993 copying tests/test_args_outputs.py -> build/lib/tests 2026-08-31T22:50:25,995 copying tests/test_sources_optional.py -> build/lib/tests 2026-08-31T22:50:25,997 copying tests/test_allele_set.py -> build/lib/tests 2026-08-31T22:50:26,000 copying tests/data.py -> build/lib/tests 2026-08-31T22:50:26,002 copying tests/test_contains_mutant_residues.py -> build/lib/tests 2026-08-31T22:50:26,004 copying tests/test_expression_integration.py -> build/lib/tests 2026-08-31T22:50:26,007 copying tests/test_sources.py -> build/lib/tests 2026-08-31T22:50:26,009 copying tests/test_deploy_script.py -> build/lib/tests 2026-08-31T22:50:26,011 copying tests/test_best_allele.py -> build/lib/tests 2026-08-31T22:50:26,014 copying tests/test_cli_protein_changes.py -> build/lib/tests 2026-08-31T22:50:26,016 copying tests/test_cached_predictor.py -> build/lib/tests 2026-08-31T22:50:26,019 copying tests/test_effect_expression_filters.py -> build/lib/tests 2026-08-31T22:50:26,022 copying tests/test_lens_binding_override.py -> build/lib/tests 2026-08-31T22:50:26,025 copying tests/test_shared_context.py -> build/lib/tests 2026-08-31T22:50:26,028 copying tests/test_end_to_end.py -> build/lib/tests 2026-08-31T22:50:26,030 copying tests/__init__.py -> build/lib/tests 2026-08-31T22:50:26,032 copying tests/test_io_pvacseq.py -> build/lib/tests 2026-08-31T22:50:26,036 copying tests/test_frameshift_fragments.py -> build/lib/tests 2026-08-31T22:50:26,038 copying tests/test_scoped_filters.py -> build/lib/tests 2026-08-31T22:50:26,041 copying tests/test_epitopes_from_commandline_args.py -> build/lib/tests 2026-08-31T22:50:26,043 copying tests/test_peptide_view.py -> build/lib/tests 2026-08-31T22:50:26,047 copying tests/test_sort_ordering.py -> build/lib/tests 2026-08-31T22:50:26,050 copying tests/test_canonical_methods.py -> build/lib/tests 2026-08-31T22:50:26,053 copying tests/test_kind_support.py -> build/lib/tests 2026-08-31T22:50:26,056 copying tests/test_coverage_gaps.py -> build/lib/tests 2026-08-31T22:50:26,059 copying tests/test_rna_helpers.py -> build/lib/tests 2026-08-31T22:50:26,062 copying tests/test_default_versions.py -> build/lib/tests 2026-08-31T22:50:26,065 copying tests/test_inputs.py -> build/lib/tests 2026-08-31T22:50:26,068 copying tests/test_expression_loader.py -> build/lib/tests 2026-08-31T22:50:26,071 copying tests/test_combine_predictor_results.py -> build/lib/tests 2026-08-31T22:50:26,075 copying tests/test_dsl_roundtrip.py -> build/lib/tests 2026-08-31T22:50:26,079 creating build/lib/topiary/rna 2026-08-31T22:50:26,080 copying topiary/rna/expression_loader.py -> build/lib/topiary/rna 2026-08-31T22:50:26,084 copying topiary/rna/common.py -> build/lib/topiary/rna 2026-08-31T22:50:26,086 copying topiary/rna/__init__.py -> build/lib/topiary/rna 2026-08-31T22:50:26,088 copying topiary/rna/gtf.py -> build/lib/topiary/rna 2026-08-31T22:50:26,090 copying topiary/rna/cufflinks.py -> build/lib/topiary/rna 2026-08-31T22:50:26,094 creating build/lib/topiary/cli 2026-08-31T22:50:26,096 copying topiary/cli/filtering.py -> build/lib/topiary/cli 2026-08-31T22:50:26,099 copying topiary/cli/cached_predictor.py -> build/lib/topiary/cli 2026-08-31T22:50:26,102 copying topiary/cli/args.py -> build/lib/topiary/cli 2026-08-31T22:50:26,106 copying topiary/cli/rna.py -> build/lib/topiary/cli 2026-08-31T22:50:26,109 copying topiary/cli/outputs.py -> build/lib/topiary/cli 2026-08-31T22:50:26,111 copying topiary/cli/sequence.py -> build/lib/topiary/cli 2026-08-31T22:50:26,113 copying topiary/cli/errors.py -> build/lib/topiary/cli 2026-08-31T22:50:26,116 copying topiary/cli/protein_changes.py -> build/lib/topiary/cli 2026-08-31T22:50:26,118 copying topiary/cli/__init__.py -> build/lib/topiary/cli 2026-08-31T22:50:26,121 copying topiary/cli/script.py -> build/lib/topiary/cli 2026-08-31T22:50:26,124 creating build/lib/topiary/ranking 2026-08-31T22:50:26,126 copying topiary/ranking/nodes.py -> build/lib/topiary/ranking 2026-08-31T22:50:26,130 copying topiary/ranking/parser.py -> build/lib/topiary/ranking 2026-08-31T22:50:26,133 copying topiary/ranking/__init__.py -> build/lib/topiary/ranking 2026-08-31T22:50:26,135 copying topiary/ranking/apply.py -> build/lib/topiary/ranking 2026-08-31T22:50:26,138 running egg_info 2026-08-31T22:50:26,149 writing topiary.egg-info/PKG-INFO 2026-08-31T22:50:26,153 writing dependency_links to topiary.egg-info/dependency_links.txt 2026-08-31T22:50:26,155 writing entry points to topiary.egg-info/entry_points.txt 2026-08-31T22:50:26,156 writing requirements to topiary.egg-info/requires.txt 2026-08-31T22:50:26,157 writing top-level names to topiary.egg-info/top_level.txt 2026-08-31T22:50:26,178 reading manifest file 'topiary.egg-info/SOURCES.txt' 2026-08-31T22:50:26,186 adding license file 'LICENSE' 2026-08-31T22:50:26,193 writing manifest file 'topiary.egg-info/SOURCES.txt' 2026-08-31T22:50:26,213 installing to build/bdist.linux-armv7l/wheel 2026-08-31T22:50:26,214 running install 2026-08-31T22:50:26,236 running install_lib 2026-08-31T22:50:26,241 creating build/bdist.linux-armv7l/wheel 2026-08-31T22:50:26,244 creating build/bdist.linux-armv7l/wheel/topiary 2026-08-31T22:50:26,245 copying build/lib/topiary/wide.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,247 copying build/lib/topiary/io.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,250 copying build/lib/topiary/self_proteome.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,252 copying build/lib/topiary/io_lens.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,255 copying build/lib/topiary/cached.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,258 copying build/lib/topiary/properties.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,261 copying build/lib/topiary/protein_fragment.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,263 copying build/lib/topiary/io_pvacseq.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,266 creating build/bdist.linux-armv7l/wheel/topiary/rna 2026-08-31T22:50:26,267 copying build/lib/topiary/rna/expression_loader.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-08-31T22:50:26,270 copying build/lib/topiary/rna/common.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-08-31T22:50:26,272 copying build/lib/topiary/rna/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-08-31T22:50:26,274 copying build/lib/topiary/rna/gtf.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-08-31T22:50:26,276 copying build/lib/topiary/rna/cufflinks.py -> build/bdist.linux-armv7l/wheel/./topiary/rna 2026-08-31T22:50:26,278 copying build/lib/topiary/filters.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,280 copying build/lib/topiary/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,283 creating build/bdist.linux-armv7l/wheel/topiary/cli 2026-08-31T22:50:26,284 copying build/lib/topiary/cli/filtering.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-08-31T22:50:26,286 copying build/lib/topiary/cli/cached_predictor.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-08-31T22:50:26,288 copying build/lib/topiary/cli/args.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-08-31T22:50:26,291 copying build/lib/topiary/cli/rna.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-08-31T22:50:26,293 copying build/lib/topiary/cli/outputs.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-08-31T22:50:26,295 copying build/lib/topiary/cli/sequence.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-08-31T22:50:26,297 copying build/lib/topiary/cli/errors.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-08-31T22:50:26,299 copying build/lib/topiary/cli/protein_changes.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-08-31T22:50:26,301 copying build/lib/topiary/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-08-31T22:50:26,305 copying build/lib/topiary/cli/script.py -> build/bdist.linux-armv7l/wheel/./topiary/cli 2026-08-31T22:50:26,309 copying build/lib/topiary/predictor.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,313 copying build/lib/topiary/sources.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,315 copying build/lib/topiary/result.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,318 copying build/lib/topiary/inputs.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,321 copying build/lib/topiary/io_protein_fragment.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,323 copying build/lib/topiary/sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./topiary 2026-08-31T22:50:26,326 creating build/bdist.linux-armv7l/wheel/topiary/ranking 2026-08-31T22:50:26,327 copying build/lib/topiary/ranking/nodes.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-08-31T22:50:26,332 copying build/lib/topiary/ranking/parser.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-08-31T22:50:26,334 copying build/lib/topiary/ranking/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-08-31T22:50:26,336 copying build/lib/topiary/ranking/apply.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking 2026-08-31T22:50:26,340 creating build/bdist.linux-armv7l/wheel/tests 2026-08-31T22:50:26,341 copying build/lib/tests/test_kind_mhc_dependence.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,344 copying build/lib/tests/test_wide.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,346 copying build/lib/tests/test_cli_coverage.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,348 copying build/lib/tests/test_absent_vs_empty_audit.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,351 copying build/lib/tests/test_lens_versions.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,353 copying build/lib/tests/test_load_cufflinks_fpkm.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,354 copying build/lib/tests/test_io.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,357 copying build/lib/tests/test_lens_multi_version.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,359 copying build/lib/tests/test_protein_fragment.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,362 copying build/lib/tests/test_mutant_epitope_predictions_class2.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,364 copying build/lib/tests/test_self_proteome.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,366 copying build/lib/tests/test_group_keys.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,369 copying build/lib/tests/test_per_peptide_alleles.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,371 copying build/lib/tests/common.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,373 copying build/lib/tests/test_result.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,376 copying build/lib/tests/test_ranking.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,379 copying build/lib/tests/test_variant_expression_filters.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,381 copying build/lib/tests/test_validation_and_edge_cases.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,386 copying build/lib/tests/test_mutant_epitope_predictions_class1.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,390 copying build/lib/tests/test_integration.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,393 copying build/lib/tests/test_peptide_property_node.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,396 copying build/lib/tests/test_self_nearest_population.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,398 copying build/lib/tests/test_dataframe.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,400 copying build/lib/tests/test_io_lens.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,403 copying build/lib/tests/test_edge_case_fixtures.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,406 copying build/lib/tests/test_load_stringtie_gtf_fpkm.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,408 copying build/lib/tests/test_cli_script.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,410 copying build/lib/tests/test_lazy_imports.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,412 copying build/lib/tests/test_context_forwarding.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,415 copying build/lib/tests/test_cli_ranking.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,418 copying build/lib/tests/test_allele_class.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,420 copying build/lib/tests/test_peptide_mutation_interval.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,423 copying build/lib/tests/test_predictor_internals.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,426 copying build/lib/tests/test_allele_free_kinds.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,432 copying build/lib/tests/test_predict_from_variants_refactor.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,435 copying build/lib/tests/test_direct_input_regressions.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,438 copying build/lib/tests/test_fragment_evidence.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,441 copying build/lib/tests/test_from_predictions.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,444 copying build/lib/tests/test_padding.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,447 copying build/lib/tests/test_sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,450 copying build/lib/tests/test_empty_and_collision_guards.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,453 copying build/lib/tests/test_dsl_extensions.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,457 copying build/lib/tests/test_cli_cached_predictor.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,460 copying build/lib/tests/test_predict_from_fragments.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,465 copying build/lib/tests/test_dsl_polish.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,468 copying build/lib/tests/test_args_outputs.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,470 copying build/lib/tests/test_sources_optional.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,473 copying build/lib/tests/test_allele_set.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,476 copying build/lib/tests/data.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,478 copying build/lib/tests/test_contains_mutant_residues.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,480 copying build/lib/tests/test_expression_integration.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,483 copying build/lib/tests/test_sources.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,485 copying build/lib/tests/test_deploy_script.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,488 copying build/lib/tests/test_best_allele.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,490 copying build/lib/tests/test_cli_protein_changes.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,493 copying build/lib/tests/test_cached_predictor.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,496 copying build/lib/tests/test_effect_expression_filters.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,499 copying build/lib/tests/test_lens_binding_override.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,501 copying build/lib/tests/test_shared_context.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,504 copying build/lib/tests/test_end_to_end.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,507 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,508 copying build/lib/tests/test_io_pvacseq.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,512 copying build/lib/tests/test_frameshift_fragments.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,515 copying build/lib/tests/test_scoped_filters.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,517 copying build/lib/tests/test_epitopes_from_commandline_args.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,519 copying build/lib/tests/test_peptide_view.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,523 copying build/lib/tests/test_sort_ordering.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,525 copying build/lib/tests/test_canonical_methods.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,528 copying build/lib/tests/test_kind_support.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,530 copying build/lib/tests/test_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,533 copying build/lib/tests/test_rna_helpers.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,536 copying build/lib/tests/test_default_versions.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,539 copying build/lib/tests/test_inputs.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,542 copying build/lib/tests/test_expression_loader.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,545 copying build/lib/tests/test_combine_predictor_results.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,549 copying build/lib/tests/test_dsl_roundtrip.py -> build/bdist.linux-armv7l/wheel/./tests 2026-08-31T22:50:26,552 running install_egg_info 2026-08-31T22:50:26,559 Copying topiary.egg-info to build/bdist.linux-armv7l/wheel/./topiary-5.34.0-py3.11.egg-info 2026-08-31T22:50:26,573 running install_scripts 2026-08-31T22:50:26,589 creating build/bdist.linux-armv7l/wheel/topiary-5.34.0.dist-info/WHEEL 2026-08-31T22:50:26,592 creating '/tmp/pip-wheel-6y5o8y9j/.tmp-ke_59ztj/topiary-5.34.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-08-31T22:50:26,596 adding 'tests/__init__.py' 2026-08-31T22:50:26,598 adding 'tests/common.py' 2026-08-31T22:50:26,600 adding 'tests/data.py' 2026-08-31T22:50:26,602 adding 'tests/test_absent_vs_empty_audit.py' 2026-08-31T22:50:26,604 adding 'tests/test_allele_class.py' 2026-08-31T22:50:26,606 adding 'tests/test_allele_free_kinds.py' 2026-08-31T22:50:26,609 adding 'tests/test_allele_set.py' 2026-08-31T22:50:26,611 adding 'tests/test_args_outputs.py' 2026-08-31T22:50:26,614 adding 'tests/test_best_allele.py' 2026-08-31T22:50:26,619 adding 'tests/test_cached_predictor.py' 2026-08-31T22:50:26,622 adding 'tests/test_canonical_methods.py' 2026-08-31T22:50:26,624 adding 'tests/test_cli_cached_predictor.py' 2026-08-31T22:50:26,627 adding 'tests/test_cli_coverage.py' 2026-08-31T22:50:26,629 adding 'tests/test_cli_protein_changes.py' 2026-08-31T22:50:26,631 adding 'tests/test_cli_ranking.py' 2026-08-31T22:50:26,633 adding 'tests/test_cli_script.py' 2026-08-31T22:50:26,636 adding 'tests/test_combine_predictor_results.py' 2026-08-31T22:50:26,639 adding 'tests/test_contains_mutant_residues.py' 2026-08-31T22:50:26,641 adding 'tests/test_context_forwarding.py' 2026-08-31T22:50:26,643 adding 'tests/test_coverage_gaps.py' 2026-08-31T22:50:26,645 adding 'tests/test_dataframe.py' 2026-08-31T22:50:26,648 adding 'tests/test_default_versions.py' 2026-08-31T22:50:26,650 adding 'tests/test_deploy_script.py' 2026-08-31T22:50:26,652 adding 'tests/test_direct_input_regressions.py' 2026-08-31T22:50:26,656 adding 'tests/test_dsl_extensions.py' 2026-08-31T22:50:26,658 adding 'tests/test_dsl_polish.py' 2026-08-31T22:50:26,662 adding 'tests/test_dsl_roundtrip.py' 2026-08-31T22:50:26,665 adding 'tests/test_edge_case_fixtures.py' 2026-08-31T22:50:26,667 adding 'tests/test_effect_expression_filters.py' 2026-08-31T22:50:26,669 adding 'tests/test_empty_and_collision_guards.py' 2026-08-31T22:50:26,671 adding 'tests/test_end_to_end.py' 2026-08-31T22:50:26,674 adding 'tests/test_epitopes_from_commandline_args.py' 2026-08-31T22:50:26,676 adding 'tests/test_expression_integration.py' 2026-08-31T22:50:26,679 adding 'tests/test_expression_loader.py' 2026-08-31T22:50:26,681 adding 'tests/test_fragment_evidence.py' 2026-08-31T22:50:26,685 adding 'tests/test_frameshift_fragments.py' 2026-08-31T22:50:26,687 adding 'tests/test_from_predictions.py' 2026-08-31T22:50:26,690 adding 'tests/test_group_keys.py' 2026-08-31T22:50:26,693 adding 'tests/test_inputs.py' 2026-08-31T22:50:26,695 adding 'tests/test_integration.py' 2026-08-31T22:50:26,698 adding 'tests/test_io.py' 2026-08-31T22:50:26,701 adding 'tests/test_io_lens.py' 2026-08-31T22:50:26,705 adding 'tests/test_io_pvacseq.py' 2026-08-31T22:50:26,707 adding 'tests/test_kind_mhc_dependence.py' 2026-08-31T22:50:26,709 adding 'tests/test_kind_support.py' 2026-08-31T22:50:26,710 adding 'tests/test_lazy_imports.py' 2026-08-31T22:50:26,712 adding 'tests/test_lens_binding_override.py' 2026-08-31T22:50:26,714 adding 'tests/test_lens_multi_version.py' 2026-08-31T22:50:26,716 adding 'tests/test_lens_versions.py' 2026-08-31T22:50:26,717 adding 'tests/test_load_cufflinks_fpkm.py' 2026-08-31T22:50:26,719 adding 'tests/test_load_stringtie_gtf_fpkm.py' 2026-08-31T22:50:26,720 adding 'tests/test_mutant_epitope_predictions_class1.py' 2026-08-31T22:50:26,722 adding 'tests/test_mutant_epitope_predictions_class2.py' 2026-08-31T22:50:26,723 adding 'tests/test_padding.py' 2026-08-31T22:50:26,725 adding 'tests/test_peptide_mutation_interval.py' 2026-08-31T22:50:26,726 adding 'tests/test_peptide_property_node.py' 2026-08-31T22:50:26,730 adding 'tests/test_peptide_view.py' 2026-08-31T22:50:26,733 adding 'tests/test_per_peptide_alleles.py' 2026-08-31T22:50:26,736 adding 'tests/test_predict_from_fragments.py' 2026-08-31T22:50:26,739 adding 'tests/test_predict_from_variants_refactor.py' 2026-08-31T22:50:26,741 adding 'tests/test_predictor_internals.py' 2026-08-31T22:50:26,743 adding 'tests/test_protein_fragment.py' 2026-08-31T22:50:26,753 adding 'tests/test_ranking.py' 2026-08-31T22:50:26,757 adding 'tests/test_result.py' 2026-08-31T22:50:26,759 adding 'tests/test_rna_helpers.py' 2026-08-31T22:50:26,760 adding 'tests/test_scoped_filters.py' 2026-08-31T22:50:26,762 adding 'tests/test_self_nearest_population.py' 2026-08-31T22:50:26,765 adding 'tests/test_self_proteome.py' 2026-08-31T22:50:26,767 adding 'tests/test_sequence_helpers.py' 2026-08-31T22:50:26,769 adding 'tests/test_shared_context.py' 2026-08-31T22:50:26,770 adding 'tests/test_sort_ordering.py' 2026-08-31T22:50:26,772 adding 'tests/test_sources.py' 2026-08-31T22:50:26,774 adding 'tests/test_sources_optional.py' 2026-08-31T22:50:26,777 adding 'tests/test_validation_and_edge_cases.py' 2026-08-31T22:50:26,778 adding 'tests/test_variant_expression_filters.py' 2026-08-31T22:50:26,781 adding 'tests/test_wide.py' 2026-08-31T22:50:26,783 adding 'topiary/__init__.py' 2026-08-31T22:50:26,790 adding 'topiary/cached.py' 2026-08-31T22:50:26,792 adding 'topiary/filters.py' 2026-08-31T22:50:26,794 adding 'topiary/inputs.py' 2026-08-31T22:50:26,796 adding 'topiary/io.py' 2026-08-31T22:50:26,800 adding 'topiary/io_lens.py' 2026-08-31T22:50:26,802 adding 'topiary/io_protein_fragment.py' 2026-08-31T22:50:26,812 adding 'topiary/io_pvacseq.py' 2026-08-31T22:50:26,820 adding 'topiary/predictor.py' 2026-08-31T22:50:26,822 adding 'topiary/properties.py' 2026-08-31T22:50:26,826 adding 'topiary/protein_fragment.py' 2026-08-31T22:50:26,830 adding 'topiary/result.py' 2026-08-31T22:50:26,835 adding 'topiary/self_proteome.py' 2026-08-31T22:50:26,836 adding 'topiary/sequence_helpers.py' 2026-08-31T22:50:26,838 adding 'topiary/sources.py' 2026-08-31T22:50:26,841 adding 'topiary/wide.py' 2026-08-31T22:50:26,843 adding 'topiary/cli/__init__.py' 2026-08-31T22:50:26,846 adding 'topiary/cli/args.py' 2026-08-31T22:50:26,848 adding 'topiary/cli/cached_predictor.py' 2026-08-31T22:50:26,849 adding 'topiary/cli/errors.py' 2026-08-31T22:50:26,850 adding 'topiary/cli/filtering.py' 2026-08-31T22:50:26,852 adding 'topiary/cli/outputs.py' 2026-08-31T22:50:26,853 adding 'topiary/cli/protein_changes.py' 2026-08-31T22:50:26,855 adding 'topiary/cli/rna.py' 2026-08-31T22:50:26,856 adding 'topiary/cli/script.py' 2026-08-31T22:50:26,858 adding 'topiary/cli/sequence.py' 2026-08-31T22:50:26,860 adding 'topiary/ranking/__init__.py' 2026-08-31T22:50:26,863 adding 'topiary/ranking/apply.py' 2026-08-31T22:50:26,881 adding 'topiary/ranking/nodes.py' 2026-08-31T22:50:26,886 adding 'topiary/ranking/parser.py' 2026-08-31T22:50:26,888 adding 'topiary/rna/__init__.py' 2026-08-31T22:50:26,889 adding 'topiary/rna/common.py' 2026-08-31T22:50:26,891 adding 'topiary/rna/cufflinks.py' 2026-08-31T22:50:26,893 adding 'topiary/rna/expression_loader.py' 2026-08-31T22:50:26,894 adding 'topiary/rna/gtf.py' 2026-08-31T22:50:26,898 adding 'topiary-5.34.0.dist-info/licenses/LICENSE' 2026-08-31T22:50:26,902 adding 'topiary-5.34.0.dist-info/METADATA' 2026-08-31T22:50:26,903 adding 'topiary-5.34.0.dist-info/WHEEL' 2026-08-31T22:50:26,904 adding 'topiary-5.34.0.dist-info/entry_points.txt' 2026-08-31T22:50:26,905 adding 'topiary-5.34.0.dist-info/top_level.txt' 2026-08-31T22:50:26,907 adding 'topiary-5.34.0.dist-info/RECORD' 2026-08-31T22:50:26,913 removing build/bdist.linux-armv7l/wheel 2026-08-31T22:50:27,058 Building wheel for topiary (pyproject.toml): finished with status 'done' 2026-08-31T22:50:27,074 Created wheel for topiary: filename=topiary-5.34.0-py3-none-any.whl size=390973 sha256=822d288739c493a9e27cec83dc47e87eefad00b5b49608af742145594be733b2 2026-08-31T22:50:27,076 Stored in directory: /tmp/pip-ephem-wheel-cache-pdm6w23x/wheels/f8/98/c6/ade3333ec64877c808033c2f5c09c80cc2bdcb7ba9be2b11ab 2026-08-31T22:50:27,097 Successfully built topiary 2026-08-31T22:50:27,113 Removed build tracker: '/tmp/pip-build-tracker-8pp6gxc6'