2026-09-02T16:41:33,653 Created temporary directory: /tmp/pip-ephem-wheel-cache-5vorbac5 2026-09-02T16:41:33,655 Created temporary directory: /tmp/pip-build-tracker-mdsaziee 2026-09-02T16:41:33,656 Initialized build tracking at /tmp/pip-build-tracker-mdsaziee 2026-09-02T16:41:33,656 Created build tracker: /tmp/pip-build-tracker-mdsaziee 2026-09-02T16:41:33,656 Entered build tracker: /tmp/pip-build-tracker-mdsaziee 2026-09-02T16:41:33,657 Created temporary directory: /tmp/pip-wheel-erg12u8_ 2026-09-02T16:41:33,660 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-02T16:41:33,663 Created temporary directory: /tmp/pip-ephem-wheel-cache-oroys4a6 2026-09-02T16:41:33,684 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-02T16:41:33,688 2 location(s) to search for versions of biobb-structure-checking: 2026-09-02T16:41:33,688 * https://pypi.org/simple/biobb-structure-checking/ 2026-09-02T16:41:33,688 * https://www.piwheels.org/simple/biobb-structure-checking/ 2026-09-02T16:41:33,689 Fetching project page and analyzing links: https://pypi.org/simple/biobb-structure-checking/ 2026-09-02T16:41:33,690 Getting page https://pypi.org/simple/biobb-structure-checking/ 2026-09-02T16:41:33,691 Found index url https://pypi.org/simple 2026-09-02T16:41:33,919 Fetched page https://pypi.org/simple/biobb-structure-checking/ as application/vnd.pypi.simple.v1+json 2026-09-02T16:41:33,934 Skipping link: No binaries permitted for biobb-structure-checking: 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https://files.pythonhosted.org/packages/61/37/9b0ff6d7f2fa5f2a7e5ca2a614ade65edf33e3351c42b2d974896bd59932/biobb_structure_checking-3.9.9.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:33,982 Skipping link: 3.9.9 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/61/37/9b0ff6d7f2fa5f2a7e5ca2a614ade65edf33e3351c42b2d974896bd59932/biobb_structure_checking-3.9.9.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:33,982 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/a3/43/cd861c5cc8ecc3476d8ae3e474acb8f98ab0c9da99b812d19c5451d00ccf/biobb_structure_checking-3.9.10-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:33,983 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/0d/31/19dc942015efa8dadb519d1a330054864eaa9178affd67cedaaa61160016/biobb_structure_checking-3.9.10.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:33,983 Skipping link: 3.9.10 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/0d/31/19dc942015efa8dadb519d1a330054864eaa9178affd67cedaaa61160016/biobb_structure_checking-3.9.10.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:33,984 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/9e/99/6a7991ad252d275113a51e1225df5e202f3b99b4ebd86940c26d86e382d3/biobb_structure_checking-3.9.11-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:33,985 Link requires a different Python (3.11.2 not in: '==3.7.*'): https://files.pythonhosted.org/packages/d0/ca/93e5d1f2d75b0f99a578bc7a0bb8519dc073e2905dec5a0a6e95d7e991a4/biobb_structure_checking-3.9.11.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:33,986 Skipping link: 3.9.11 Requires-Python ==3.7.*: https://files.pythonhosted.org/packages/d0/ca/93e5d1f2d75b0f99a578bc7a0bb8519dc073e2905dec5a0a6e95d7e991a4/biobb_structure_checking-3.9.11.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:33,986 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/dc/66/9aee0a636ffa94d89c495468d61607790162ec26a278ec4cabb82410c93a/biobb_structure_checking-3.10.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-09-02T16:41:33,987 Found link 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https://files.pythonhosted.org/packages/80/97/11822214f8649f0cf944468fe32461f46dc219b9a80c804cd93e2841496b/biobb_structure_checking-3.12.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-09-02T16:41:33,991 Found link https://files.pythonhosted.org/packages/f5/c1/8fe39123366ae2b1ff9806667185da01871878a3acc419d1f02fc0713aa0/biobb_structure_checking-3.12.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.12.0 2026-09-02T16:41:33,992 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/e0/72/0e3893b0ed4846d2237228c73378519a122e9e782bc0536bd3fc3be79501/biobb_structure_checking-3.12.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-09-02T16:41:33,992 Found link https://files.pythonhosted.org/packages/8e/a3/9e01147d4b0244435d143bdc70f6520b01394ae4622eecd7dfcec6f1ebcf/biobb_structure_checking-3.12.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.12.1 2026-09-02T16:41:33,993 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/c2/19/f28556efe1a066317fbe8ac794784e072e1971ae45ef27ca460f97cc0f23/biobb_structure_checking-3.13.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-09-02T16:41:33,994 Found link https://files.pythonhosted.org/packages/af/6b/580b883d738e617b7c12ae6eb5b02fc638be22b6abf67dc263927d48be6c/biobb_structure_checking-3.13.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.13.0 2026-09-02T16:41:33,994 Skipping link: No binaries permitted for biobb-structure-checking: 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https://files.pythonhosted.org/packages/42/30/c3abd1652f1ab2f01b9ea438b0398bb247f9d85e4cf193abcb38b68f4ef6/biobb_structure_checking-3.13.4-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8) 2026-09-02T16:41:34,000 Found link https://files.pythonhosted.org/packages/52/c8/fbde8e5c8502699a5f85837298acefc14a198b31d30e3d87fde18fa6f169/biobb_structure_checking-3.13.4.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8), version: 3.13.4 2026-09-02T16:41:34,001 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/93/e8/c8eddb1e4996aebc703ed6344131861d54e763184f82a3b61c4dae4c68f2/biobb_structure_checking-3.13.5-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8) 2026-09-02T16:41:34,002 Found link https://files.pythonhosted.org/packages/fb/27/8cf9b68cb39e063a373b87ba8881d888dd8b6449dfce5b6a3605f095128d/biobb_structure_checking-3.13.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8), version: 3.13.5 2026-09-02T16:41:34,003 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/93/46/c97cecdb5d82490f01e90458255d7afdd84d309e260f0a037757a9d898ae/biobb_structure_checking-3.15.6-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8) 2026-09-02T16:41:34,003 Found link https://files.pythonhosted.org/packages/a2/86/ac0784d3a4a544ebc2275d36dd15daad21d079c0f7105d7001b4041df045/biobb_structure_checking-3.15.6.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.8), version: 3.15.6 2026-09-02T16:41:34,004 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/c6/cc/8d41be69fa53b9774fa9c93fddbe8d36de6bbc7ddeabf7b886bb752925a3/biobb_structure_checking-3.16.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.9) 2026-09-02T16:41:34,005 Found link https://files.pythonhosted.org/packages/b2/8c/e3743fc9913ce678190cb90d9e6a68c7c16bfdaa07a01b0ee23e9ef571a3/biobb_structure_checking-3.16.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.9), version: 3.16.1 2026-09-02T16:41:34,005 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/26/4e/1beaeb8b504d715fe789051193dc4482954611b9676272ed22b48454a262/biobb_structure_checking-3.16.2-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.9) 2026-09-02T16:41:34,006 Found link https://files.pythonhosted.org/packages/3d/7a/29c141ecaf0784b3c1412fc4587a3927986a4875df396611736baa7fd69b/biobb_structure_checking-3.16.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.9), version: 3.16.2 2026-09-02T16:41:34,007 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/4b/3c/3bd46c651a6042937aa78caadf1cae84a8d469fe6a30b50997ba3dc11e71/biobb_structure_checking-3.16.3-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.9) 2026-09-02T16:41:34,008 Found link https://files.pythonhosted.org/packages/de/17/22bd5eff3c2e4ba4d9e0ae648258e7a05f2faa60e5786fcc4a3ac019eed1/biobb_structure_checking-3.16.3.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.9), version: 3.16.3 2026-09-02T16:41:34,009 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-structure-checking/ 2026-09-02T16:41:34,010 Getting page https://www.piwheels.org/simple/biobb-structure-checking/ 2026-09-02T16:41:34,011 Found index url https://www.piwheels.org/simple 2026-09-02T16:41:34,196 Fetched page https://www.piwheels.org/simple/biobb-structure-checking/ as text/html 2026-09-02T16:41:34,207 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.16.2-py3-none-any.whl#sha256=f712d5387abe273429e2737935ca57faeacf5fc1b873a25747efa8128b03d596 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.9) 2026-09-02T16:41:34,208 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.16.1-py3-none-any.whl#sha256=d2a8ab8cd28ed4cd3c84f79e6724d83147a39926218ed3cea208eb52a46ace1e (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.9) 2026-09-02T16:41:34,209 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.13.5-py3-none-any.whl#sha256=1ff104b980ff49db450933410402e9471cf481f034023b537a0f82a92354575e (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.8) 2026-09-02T16:41:34,210 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.13.4-py3-none-any.whl#sha256=8d2b47747a65b20b93e01648bf9f7d6209224d92b9df1262fd7ccbc340c5b499 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.8) 2026-09-02T16:41:34,210 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.13.3-py3-none-any.whl#sha256=ec039ad45dae0c6b2c25a799253ba784f1faa135e6225031a1251788adbd0700 (from 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2026-09-02T16:41:34,213 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.10.1-py3-none-any.whl#sha256=8edd75d0ff29bb737e8c0eb8b0d3afaa0ce321452921e584a8f29ac11910e00a (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-09-02T16:41:34,214 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.10.0-py3-none-any.whl#sha256=da2a762d7c3087d3dcb50581ab75dbdef6f3b7920a674fd900f210fe66305c86 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2026-09-02T16:41:34,215 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.11-py3-none-any.whl#sha256=59a99c0fa789ccb8993b3aa8b7a39783e24f49556bdb1392ba274a12a8ae06ce (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:34,215 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.10-py3-none-any.whl#sha256=6229a9c090a560f835fa166f7557157dc0e21d797c8cc46d6ec94d7a23256d51 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:34,216 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.9-py3-none-any.whl#sha256=12ec8887f6f22b9f7b89820c514231cf98909862f4f84297fa6e6bc6a045cbad (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:34,217 Skipping link: No binaries permitted for biobb-structure-checking: 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2026-09-02T16:41:34,218 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.5-py3-none-any.whl#sha256=582d529a2c847f6c8cfc0afd2f51699bbd60bc0f1fadbfcb277dfb363253caf7 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:34,219 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.4-py3-none-any.whl#sha256=59e51320caa1bdc56677fb8db25e9ce9ced398c5e4b0a026617be8844df1a6d3 (from https://www.piwheels.org/simple/biobb-structure-checking/) 2026-09-02T16:41:34,219 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.3-py3-none-any.whl#sha256=bcd1ac36892c14f7cffef48805c07dedeace4f7d94add1a5c3d57b5fc064ceaa (from https://www.piwheels.org/simple/biobb-structure-checking/) 2026-09-02T16:41:34,220 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.2-py3-none-any.whl#sha256=333b156968b057501ca2b331c021dae957bffe4a63766de01b2c69f2f6715680 (from https://www.piwheels.org/simple/biobb-structure-checking/) 2026-09-02T16:41:34,221 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.1-py3-none-any.whl#sha256=3e9cc73943fd2fce1e5889acfd325e4405c80017d479b9276f422c04df745f1c (from https://www.piwheels.org/simple/biobb-structure-checking/) 2026-09-02T16:41:34,221 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.8.5-py3-none-any.whl#sha256=5db5ad249dcde45660778f6b2af7511367e5d712f21a2918d0a3ef878b1ad93e (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2026-09-02T16:41:34,222 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.3-py3-none-any.whl#sha256=171c66ce739cf98c9e748a32426353cff168927e4955c9a89538d2c8781be485 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2026-09-02T16:41:34,222 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.2-py3-none-any.whl#sha256=0951c702b05d2f61693b25cab0cf3b9bd46c11381048f3ad7af6c58bb7403810 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2026-09-02T16:41:34,223 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.1-py3-none-any.whl#sha256=a837ba4af81fd98a21e85719e595845d693dfee2a2513c504d243809ea163825 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2026-09-02T16:41:34,223 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.0-py3-none-any.whl#sha256=7c51b36c5f52e0addd64f3b7ec0c3e3f6ce43d95ae8d24d452c135e2650b7242 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.5) 2026-09-02T16:41:34,224 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.5.3-py3-none-any.whl#sha256=8f9443b0614b6d0c9b895612d995e36ce8d4d35a52b9de45b0587cb6007ea104 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:34,224 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.5.2-py3-none-any.whl#sha256=27db7be134a0b373dd67dacc9ae5116f2f57709945749df6a2950ea91a9c83c9 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:34,225 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.5.0-py3-none-any.whl#sha256=9076b15d538fdac6ade33a2a1b514b8fd1d64851e84ca2941390851dc3d7372e (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:34,225 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.0.2-py3-none-any.whl#sha256=d9c71e4c12c116a92db4e5bfc2c869ac06b270f07d10c15f86c7db1bf0510125 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:34,226 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.0.1-py3-none-any.whl#sha256=4dfd2c0acabfa01f77c89c67040ff349d90f919c38e0300b3e1f1ef4bba07b97 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:34,227 Skipping link: No binaries permitted for biobb-structure-checking: https://archive1.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.0.0-py3-none-any.whl#sha256=4360463771a60a95ecbb4397df8c57f7b889dda78c87d50508629149b60726e0 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2026-09-02T16:41:34,227 Skipping link: not a file: https://www.piwheels.org/simple/biobb-structure-checking/ 2026-09-02T16:41:34,228 Skipping link: not a file: https://pypi.org/simple/biobb-structure-checking/ 2026-09-02T16:41:34,249 Given no hashes to check 1 links for project 'biobb-structure-checking': discarding no candidates 2026-09-02T16:41:34,267 Collecting biobb-structure-checking==3.16.3 2026-09-02T16:41:34,270 Created temporary directory: /tmp/pip-unpack-kj2z07vt 2026-09-02T16:41:34,422 Downloading biobb_structure_checking-3.16.3.tar.gz (176 kB) 2026-09-02T16:41:34,653 Added biobb-structure-checking==3.16.3 from https://files.pythonhosted.org/packages/de/17/22bd5eff3c2e4ba4d9e0ae648258e7a05f2faa60e5786fcc4a3ac019eed1/biobb_structure_checking-3.16.3.tar.gz to build tracker '/tmp/pip-build-tracker-mdsaziee' 2026-09-02T16:41:34,654 Running setup.py (path:/tmp/pip-wheel-erg12u8_/biobb-structure-checking_e43acf681f4344cb95407fd6fb9738ea/setup.py) egg_info for package biobb-structure-checking 2026-09-02T16:41:34,655 Created temporary directory: /tmp/pip-pip-egg-info-95hhr4xx 2026-09-02T16:41:34,656 Preparing metadata (setup.py): started 2026-09-02T16:41:34,657 Running command python setup.py egg_info 2026-09-02T16:41:35,544 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-02T16:41:35,544 !! 2026-09-02T16:41:35,545 ******************************************************************************** 2026-09-02T16:41:35,545 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-02T16:41:35,546 License :: OSI Approved :: Apache Software License 2026-09-02T16:41:35,547 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-02T16:41:35,548 ******************************************************************************** 2026-09-02T16:41:35,549 !! 2026-09-02T16:41:35,549 self._finalize_license_expression() 2026-09-02T16:41:35,574 running egg_info 2026-09-02T16:41:35,602 creating /tmp/pip-pip-egg-info-95hhr4xx/biobb_structure_checking.egg-info 2026-09-02T16:41:35,604 writing /tmp/pip-pip-egg-info-95hhr4xx/biobb_structure_checking.egg-info/PKG-INFO 2026-09-02T16:41:35,607 writing dependency_links to /tmp/pip-pip-egg-info-95hhr4xx/biobb_structure_checking.egg-info/dependency_links.txt 2026-09-02T16:41:35,609 writing entry points to /tmp/pip-pip-egg-info-95hhr4xx/biobb_structure_checking.egg-info/entry_points.txt 2026-09-02T16:41:35,611 writing requirements to /tmp/pip-pip-egg-info-95hhr4xx/biobb_structure_checking.egg-info/requires.txt 2026-09-02T16:41:35,612 writing top-level names to /tmp/pip-pip-egg-info-95hhr4xx/biobb_structure_checking.egg-info/top_level.txt 2026-09-02T16:41:35,613 writing manifest file '/tmp/pip-pip-egg-info-95hhr4xx/biobb_structure_checking.egg-info/SOURCES.txt' 2026-09-02T16:41:35,706 reading manifest file '/tmp/pip-pip-egg-info-95hhr4xx/biobb_structure_checking.egg-info/SOURCES.txt' 2026-09-02T16:41:35,708 reading manifest template 'MANIFEST.in' 2026-09-02T16:41:35,722 adding license file 'LICENSE' 2026-09-02T16:41:35,726 writing manifest file '/tmp/pip-pip-egg-info-95hhr4xx/biobb_structure_checking.egg-info/SOURCES.txt' 2026-09-02T16:41:35,834 Preparing metadata (setup.py): finished with status 'done' 2026-09-02T16:41:35,839 Source in /tmp/pip-wheel-erg12u8_/biobb-structure-checking_e43acf681f4344cb95407fd6fb9738ea has version 3.16.3, which satisfies requirement biobb-structure-checking==3.16.3 from https://files.pythonhosted.org/packages/de/17/22bd5eff3c2e4ba4d9e0ae648258e7a05f2faa60e5786fcc4a3ac019eed1/biobb_structure_checking-3.16.3.tar.gz 2026-09-02T16:41:35,840 Removed biobb-structure-checking==3.16.3 from https://files.pythonhosted.org/packages/de/17/22bd5eff3c2e4ba4d9e0ae648258e7a05f2faa60e5786fcc4a3ac019eed1/biobb_structure_checking-3.16.3.tar.gz from build tracker '/tmp/pip-build-tracker-mdsaziee' 2026-09-02T16:41:35,847 Created temporary directory: /tmp/pip-unpack-pvsuezvl 2026-09-02T16:41:35,847 Building wheels for collected packages: biobb-structure-checking 2026-09-02T16:41:35,852 Created temporary directory: /tmp/pip-wheel-mo069uwp 2026-09-02T16:41:35,853 Building wheel for biobb-structure-checking (setup.py): started 2026-09-02T16:41:35,854 Destination directory: /tmp/pip-wheel-mo069uwp 2026-09-02T16:41:35,854 Running command python setup.py bdist_wheel 2026-09-02T16:41:36,705 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-02T16:41:36,706 !! 2026-09-02T16:41:36,707 ******************************************************************************** 2026-09-02T16:41:36,708 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-02T16:41:36,709 License :: OSI Approved :: Apache Software License 2026-09-02T16:41:36,710 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-02T16:41:36,710 ******************************************************************************** 2026-09-02T16:41:36,711 !! 2026-09-02T16:41:36,712 self._finalize_license_expression() 2026-09-02T16:41:36,712 running bdist_wheel 2026-09-02T16:41:36,846 running build 2026-09-02T16:41:36,847 running build_py 2026-09-02T16:41:36,875 creating build/lib/biobb_structure_checking 2026-09-02T16:41:36,877 copying biobb_structure_checking/check_structure.py -> build/lib/biobb_structure_checking 2026-09-02T16:41:36,879 copying biobb_structure_checking/structure_manager.py -> build/lib/biobb_structure_checking 2026-09-02T16:41:36,883 copying biobb_structure_checking/modeller_manager.py -> build/lib/biobb_structure_checking 2026-09-02T16:41:36,885 copying biobb_structure_checking/__init__.py -> build/lib/biobb_structure_checking 2026-09-02T16:41:36,886 copying biobb_structure_checking/constants.py -> build/lib/biobb_structure_checking 2026-09-02T16:41:36,889 copying biobb_structure_checking/structure_checking.py -> build/lib/biobb_structure_checking 2026-09-02T16:41:36,892 copying biobb_structure_checking/mutation_manager.py -> build/lib/biobb_structure_checking 2026-09-02T16:41:36,894 creating build/lib/biobb_structure_checking/pdbio 2026-09-02T16:41:36,896 copying biobb_structure_checking/pdbio/__init__.py -> build/lib/biobb_structure_checking/pdbio 2026-09-02T16:41:36,897 copying biobb_structure_checking/pdbio/json_writer.py -> build/lib/biobb_structure_checking/pdbio 2026-09-02T16:41:36,899 copying biobb_structure_checking/pdbio/mmb_server.py -> build/lib/biobb_structure_checking/pdbio 2026-09-02T16:41:36,902 copying biobb_structure_checking/pdbio/bare_builder.py -> build/lib/biobb_structure_checking/pdbio 2026-09-02T16:41:36,904 copying biobb_structure_checking/pdbio/param_input.py -> build/lib/biobb_structure_checking/pdbio 2026-09-02T16:41:36,906 copying biobb_structure_checking/pdbio/PDBIO_extended.py -> build/lib/biobb_structure_checking/pdbio 2026-09-02T16:41:36,909 creating build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,910 copying biobb_structure_checking/commands/models.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,912 copying biobb_structure_checking/commands/clashes.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,914 copying biobb_structure_checking/commands/getss.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,916 copying biobb_structure_checking/commands/sequences.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,917 copying biobb_structure_checking/commands/chiral_bck.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,919 copying biobb_structure_checking/commands/water.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,921 copying biobb_structure_checking/commands/rem_hydrogen.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,923 copying biobb_structure_checking/commands/__init__.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,924 copying biobb_structure_checking/commands/chains.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,927 copying biobb_structure_checking/commands/altloc.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,929 copying biobb_structure_checking/commands/ligands.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,931 copying biobb_structure_checking/commands/backbone.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,934 copying biobb_structure_checking/commands/mutateside.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,936 copying biobb_structure_checking/commands/cistransbck.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,937 copying biobb_structure_checking/commands/add_hydrogen.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,940 copying biobb_structure_checking/commands/inscodes.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,941 copying biobb_structure_checking/commands/chiral.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,943 copying biobb_structure_checking/commands/metals.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,945 copying biobb_structure_checking/commands/fixside.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,947 copying biobb_structure_checking/commands/amide.py -> build/lib/biobb_structure_checking/commands 2026-09-02T16:41:36,950 creating build/lib/biobb_structure_checking/modelling 2026-09-02T16:41:36,951 copying biobb_structure_checking/modelling/modelsdata.py -> build/lib/biobb_structure_checking/modelling 2026-09-02T16:41:36,953 copying biobb_structure_checking/modelling/chainsdata.py -> build/lib/biobb_structure_checking/modelling 2026-09-02T16:41:36,955 copying biobb_structure_checking/modelling/__init__.py -> build/lib/biobb_structure_checking/modelling 2026-09-02T16:41:36,957 copying biobb_structure_checking/modelling/utils.py -> build/lib/biobb_structure_checking/modelling 2026-09-02T16:41:36,960 copying biobb_structure_checking/modelling/residue_set.py -> build/lib/biobb_structure_checking/modelling 2026-09-02T16:41:36,962 copying biobb_structure_checking/modelling/sequencedata.py -> build/lib/biobb_structure_checking/modelling 2026-09-02T16:41:36,965 copying biobb_structure_checking/modelling/structuredata.py -> build/lib/biobb_structure_checking/modelling 2026-09-02T16:41:36,967 creating build/lib/biobb_structure_checking/libs 2026-09-02T16:41:36,969 copying biobb_structure_checking/libs/residue_lib_manager.py -> build/lib/biobb_structure_checking/libs 2026-09-02T16:41:36,971 copying biobb_structure_checking/libs/__init__.py -> build/lib/biobb_structure_checking/libs 2026-09-02T16:41:36,972 copying biobb_structure_checking/libs/data_lib_manager.py -> build/lib/biobb_structure_checking/libs 2026-09-02T16:41:36,974 running egg_info 2026-09-02T16:41:37,001 writing biobb_structure_checking.egg-info/PKG-INFO 2026-09-02T16:41:37,004 writing dependency_links to biobb_structure_checking.egg-info/dependency_links.txt 2026-09-02T16:41:37,006 writing entry points to biobb_structure_checking.egg-info/entry_points.txt 2026-09-02T16:41:37,007 writing requirements to biobb_structure_checking.egg-info/requires.txt 2026-09-02T16:41:37,008 writing top-level names to biobb_structure_checking.egg-info/top_level.txt 2026-09-02T16:41:37,044 reading manifest file 'biobb_structure_checking.egg-info/SOURCES.txt' 2026-09-02T16:41:37,049 reading manifest template 'MANIFEST.in' 2026-09-02T16:41:37,063 adding license file 'LICENSE' 2026-09-02T16:41:37,068 writing manifest file 'biobb_structure_checking.egg-info/SOURCES.txt' 2026-09-02T16:41:37,070 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'biobb_structure_checking.dat' is absent from the `packages` configuration. 2026-09-02T16:41:37,071 !! 2026-09-02T16:41:37,072 ******************************************************************************** 2026-09-02T16:41:37,073 ############################ 2026-09-02T16:41:37,073 # Package would be ignored # 2026-09-02T16:41:37,074 ############################ 2026-09-02T16:41:37,074 Python recognizes 'biobb_structure_checking.dat' as an importable package[^1], 2026-09-02T16:41:37,075 but it is absent from setuptools' `packages` configuration. 2026-09-02T16:41:37,076 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-02T16:41:37,077 package, please make sure that 'biobb_structure_checking.dat' is explicitly added 2026-09-02T16:41:37,077 to the `packages` configuration field. 2026-09-02T16:41:37,078 Alternatively, you can also rely on setuptools' discovery methods 2026-09-02T16:41:37,079 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-02T16:41:37,079 instead of `find_packages(...)`/`find:`). 2026-09-02T16:41:37,080 You can read more about "package discovery" on setuptools documentation page: 2026-09-02T16:41:37,081 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-02T16:41:37,082 If you don't want 'biobb_structure_checking.dat' to be distributed and are 2026-09-02T16:41:37,082 already explicitly excluding 'biobb_structure_checking.dat' via 2026-09-02T16:41:37,083 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-02T16:41:37,083 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-02T16:41:37,084 combination with a more fine grained `package-data` configuration. 2026-09-02T16:41:37,084 You can read more about "package data files" on setuptools documentation page: 2026-09-02T16:41:37,085 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-02T16:41:37,089 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-02T16:41:37,090 even if it does not contain any `.py` files. 2026-09-02T16:41:37,090 On the other hand, currently there is no concept of package data 2026-09-02T16:41:37,091 directory, all directories are treated like packages. 2026-09-02T16:41:37,091 ******************************************************************************** 2026-09-02T16:41:37,093 !! 2026-09-02T16:41:37,093 check.warn(importable) 2026-09-02T16:41:37,094 /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'biobb_structure_checking.dat.modRes' is absent from the `packages` configuration. 2026-09-02T16:41:37,094 !! 2026-09-02T16:41:37,096 ******************************************************************************** 2026-09-02T16:41:37,097 ############################ 2026-09-02T16:41:37,097 # Package would be ignored # 2026-09-02T16:41:37,098 ############################ 2026-09-02T16:41:37,098 Python recognizes 'biobb_structure_checking.dat.modRes' as an importable package[^1], 2026-09-02T16:41:37,099 but it is absent from setuptools' `packages` configuration. 2026-09-02T16:41:37,100 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-02T16:41:37,101 package, please make sure that 'biobb_structure_checking.dat.modRes' is explicitly added 2026-09-02T16:41:37,101 to the `packages` configuration field. 2026-09-02T16:41:37,102 Alternatively, you can also rely on setuptools' discovery methods 2026-09-02T16:41:37,103 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-02T16:41:37,103 instead of `find_packages(...)`/`find:`). 2026-09-02T16:41:37,104 You can read more about "package discovery" on setuptools documentation page: 2026-09-02T16:41:37,105 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-02T16:41:37,106 If you don't want 'biobb_structure_checking.dat.modRes' to be distributed and are 2026-09-02T16:41:37,107 already explicitly excluding 'biobb_structure_checking.dat.modRes' via 2026-09-02T16:41:37,107 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-02T16:41:37,108 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-02T16:41:37,109 combination with a more fine grained `package-data` configuration. 2026-09-02T16:41:37,110 You can read more about "package data files" on setuptools documentation page: 2026-09-02T16:41:37,110 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-02T16:41:37,112 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-02T16:41:37,112 even if it does not contain any `.py` files. 2026-09-02T16:41:37,112 On the other hand, currently there is no concept of package data 2026-09-02T16:41:37,113 directory, all directories are treated like packages. 2026-09-02T16:41:37,113 ******************************************************************************** 2026-09-02T16:41:37,114 !! 2026-09-02T16:41:37,115 check.warn(importable) 2026-09-02T16:41:37,116 copying biobb_structure_checking/py.typed -> build/lib/biobb_structure_checking 2026-09-02T16:41:37,116 creating build/lib/biobb_structure_checking/dat 2026-09-02T16:41:37,117 copying biobb_structure_checking/dat/ADT_prm.json -> build/lib/biobb_structure_checking/dat 2026-09-02T16:41:37,117 copying biobb_structure_checking/dat/CMIP_prm.json -> build/lib/biobb_structure_checking/dat 2026-09-02T16:41:37,118 copying biobb_structure_checking/dat/all_residues.in -> build/lib/biobb_structure_checking/dat 2026-09-02T16:41:37,118 copying biobb_structure_checking/dat/commands.hlp -> build/lib/biobb_structure_checking/dat 2026-09-02T16:41:37,119 copying biobb_structure_checking/dat/data_lib.json -> build/lib/biobb_structure_checking/dat 2026-09-02T16:41:37,119 creating build/lib/biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,120 copying biobb_structure_checking/dat/modRes/modSER.json -> build/lib/biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,120 copying biobb_structure_checking/dat/modRes/modTHR.json -> build/lib/biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,121 copying biobb_structure_checking/dat/modRes/modTYR.json -> build/lib/biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,121 copying biobb_structure_checking/dat/modRes/modres.json -> build/lib/biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,122 copying biobb_structure_checking/dat/modRes/modres_phospho.json -> build/lib/biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,162 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-09-02T16:41:37,163 !! 2026-09-02T16:41:37,164 ******************************************************************************** 2026-09-02T16:41:37,164 Please avoid running ``setup.py`` directly. 2026-09-02T16:41:37,165 Instead, use pypa/build, pypa/installer or other 2026-09-02T16:41:37,165 standards-based tools. 2026-09-02T16:41:37,166 This deprecation is overdue, please update your project and remove deprecated 2026-09-02T16:41:37,167 calls to avoid build errors in the future. 2026-09-02T16:41:37,168 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-09-02T16:41:37,169 ******************************************************************************** 2026-09-02T16:41:37,170 !! 2026-09-02T16:41:37,171 self.initialize_options() 2026-09-02T16:41:37,196 installing to build/bdist.linux-armv7l/wheel 2026-09-02T16:41:37,196 running install 2026-09-02T16:41:37,219 running install_lib 2026-09-02T16:41:37,250 creating build/bdist.linux-armv7l/wheel 2026-09-02T16:41:37,253 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking 2026-09-02T16:41:37,254 copying build/lib/biobb_structure_checking/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-09-02T16:41:37,257 copying build/lib/biobb_structure_checking/check_structure.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-09-02T16:41:37,259 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat 2026-09-02T16:41:37,260 copying build/lib/biobb_structure_checking/dat/ADT_prm.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat 2026-09-02T16:41:37,263 copying build/lib/biobb_structure_checking/dat/all_residues.in -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat 2026-09-02T16:41:37,272 copying build/lib/biobb_structure_checking/dat/data_lib.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat 2026-09-02T16:41:37,278 copying build/lib/biobb_structure_checking/dat/CMIP_prm.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat 2026-09-02T16:41:37,281 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,282 copying build/lib/biobb_structure_checking/dat/modRes/modSER.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,284 copying build/lib/biobb_structure_checking/dat/modRes/modTYR.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,287 copying build/lib/biobb_structure_checking/dat/modRes/modTHR.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,289 copying build/lib/biobb_structure_checking/dat/modRes/modres.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,297 copying build/lib/biobb_structure_checking/dat/modRes/modres_phospho.json -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat/modRes 2026-09-02T16:41:37,305 copying build/lib/biobb_structure_checking/dat/commands.hlp -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/dat 2026-09-02T16:41:37,308 copying build/lib/biobb_structure_checking/structure_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-09-02T16:41:37,313 copying build/lib/biobb_structure_checking/modeller_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-09-02T16:41:37,315 copying build/lib/biobb_structure_checking/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-09-02T16:41:37,318 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/pdbio 2026-09-02T16:41:37,319 copying build/lib/biobb_structure_checking/pdbio/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-09-02T16:41:37,321 copying build/lib/biobb_structure_checking/pdbio/json_writer.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-09-02T16:41:37,322 copying build/lib/biobb_structure_checking/pdbio/mmb_server.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-09-02T16:41:37,325 copying build/lib/biobb_structure_checking/pdbio/bare_builder.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-09-02T16:41:37,327 copying build/lib/biobb_structure_checking/pdbio/param_input.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-09-02T16:41:37,329 copying build/lib/biobb_structure_checking/pdbio/PDBIO_extended.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/pdbio 2026-09-02T16:41:37,332 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2026-09-02T16:41:37,333 copying build/lib/biobb_structure_checking/commands/models.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,335 copying build/lib/biobb_structure_checking/commands/clashes.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,337 copying build/lib/biobb_structure_checking/commands/getss.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,339 copying build/lib/biobb_structure_checking/commands/sequences.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,341 copying build/lib/biobb_structure_checking/commands/chiral_bck.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,343 copying build/lib/biobb_structure_checking/commands/water.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,345 copying build/lib/biobb_structure_checking/commands/rem_hydrogen.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,347 copying build/lib/biobb_structure_checking/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,348 copying build/lib/biobb_structure_checking/commands/chains.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,350 copying build/lib/biobb_structure_checking/commands/altloc.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,352 copying build/lib/biobb_structure_checking/commands/ligands.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,354 copying build/lib/biobb_structure_checking/commands/backbone.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,357 copying build/lib/biobb_structure_checking/commands/mutateside.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,359 copying build/lib/biobb_structure_checking/commands/cistransbck.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,360 copying build/lib/biobb_structure_checking/commands/add_hydrogen.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,363 copying build/lib/biobb_structure_checking/commands/inscodes.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,364 copying build/lib/biobb_structure_checking/commands/chiral.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,366 copying build/lib/biobb_structure_checking/commands/metals.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,368 copying build/lib/biobb_structure_checking/commands/fixside.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,370 copying build/lib/biobb_structure_checking/commands/amide.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/commands 2026-09-02T16:41:37,372 copying build/lib/biobb_structure_checking/constants.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-09-02T16:41:37,375 copying build/lib/biobb_structure_checking/structure_checking.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-09-02T16:41:37,378 copying build/lib/biobb_structure_checking/mutation_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking 2026-09-02T16:41:37,381 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/modelling 2026-09-02T16:41:37,382 copying build/lib/biobb_structure_checking/modelling/modelsdata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-09-02T16:41:37,384 copying build/lib/biobb_structure_checking/modelling/chainsdata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-09-02T16:41:37,387 copying build/lib/biobb_structure_checking/modelling/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-09-02T16:41:37,388 copying build/lib/biobb_structure_checking/modelling/utils.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-09-02T16:41:37,391 copying build/lib/biobb_structure_checking/modelling/residue_set.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-09-02T16:41:37,393 copying build/lib/biobb_structure_checking/modelling/sequencedata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-09-02T16:41:37,397 copying build/lib/biobb_structure_checking/modelling/structuredata.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/modelling 2026-09-02T16:41:37,400 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/libs 2026-09-02T16:41:37,402 copying build/lib/biobb_structure_checking/libs/residue_lib_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/libs 2026-09-02T16:41:37,404 copying build/lib/biobb_structure_checking/libs/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/libs 2026-09-02T16:41:37,406 copying build/lib/biobb_structure_checking/libs/data_lib_manager.py -> build/bdist.linux-armv7l/wheel/./biobb_structure_checking/libs 2026-09-02T16:41:37,408 running install_egg_info 2026-09-02T16:41:37,443 Copying biobb_structure_checking.egg-info to build/bdist.linux-armv7l/wheel/./biobb_structure_checking-3.16.3-py3.11.egg-info 2026-09-02T16:41:37,455 running install_scripts 2026-09-02T16:41:37,469 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking-3.16.3.dist-info/WHEEL 2026-09-02T16:41:37,472 creating '/tmp/pip-wheel-mo069uwp/biobb_structure_checking-3.16.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-09-02T16:41:37,474 adding 'biobb_structure_checking/__init__.py' 2026-09-02T16:41:37,476 adding 'biobb_structure_checking/check_structure.py' 2026-09-02T16:41:37,480 adding 'biobb_structure_checking/constants.py' 2026-09-02T16:41:37,482 adding 'biobb_structure_checking/modeller_manager.py' 2026-09-02T16:41:37,484 adding 'biobb_structure_checking/mutation_manager.py' 2026-09-02T16:41:37,485 adding 'biobb_structure_checking/py.typed' 2026-09-02T16:41:37,489 adding 'biobb_structure_checking/structure_checking.py' 2026-09-02T16:41:37,498 adding 'biobb_structure_checking/structure_manager.py' 2026-09-02T16:41:37,500 adding 'biobb_structure_checking/commands/__init__.py' 2026-09-02T16:41:37,502 adding 'biobb_structure_checking/commands/add_hydrogen.py' 2026-09-02T16:41:37,504 adding 'biobb_structure_checking/commands/altloc.py' 2026-09-02T16:41:37,506 adding 'biobb_structure_checking/commands/amide.py' 2026-09-02T16:41:37,508 adding 'biobb_structure_checking/commands/backbone.py' 2026-09-02T16:41:37,510 adding 'biobb_structure_checking/commands/chains.py' 2026-09-02T16:41:37,512 adding 'biobb_structure_checking/commands/chiral.py' 2026-09-02T16:41:37,513 adding 'biobb_structure_checking/commands/chiral_bck.py' 2026-09-02T16:41:37,515 adding 'biobb_structure_checking/commands/cistransbck.py' 2026-09-02T16:41:37,517 adding 'biobb_structure_checking/commands/clashes.py' 2026-09-02T16:41:37,518 adding 'biobb_structure_checking/commands/fixside.py' 2026-09-02T16:41:37,520 adding 'biobb_structure_checking/commands/getss.py' 2026-09-02T16:41:37,522 adding 'biobb_structure_checking/commands/inscodes.py' 2026-09-02T16:41:37,524 adding 'biobb_structure_checking/commands/ligands.py' 2026-09-02T16:41:37,526 adding 'biobb_structure_checking/commands/metals.py' 2026-09-02T16:41:37,527 adding 'biobb_structure_checking/commands/models.py' 2026-09-02T16:41:37,529 adding 'biobb_structure_checking/commands/mutateside.py' 2026-09-02T16:41:37,531 adding 'biobb_structure_checking/commands/rem_hydrogen.py' 2026-09-02T16:41:37,532 adding 'biobb_structure_checking/commands/sequences.py' 2026-09-02T16:41:37,534 adding 'biobb_structure_checking/commands/water.py' 2026-09-02T16:41:37,536 adding 'biobb_structure_checking/dat/ADT_prm.json' 2026-09-02T16:41:37,538 adding 'biobb_structure_checking/dat/CMIP_prm.json' 2026-09-02T16:41:37,556 adding 'biobb_structure_checking/dat/all_residues.in' 2026-09-02T16:41:37,559 adding 'biobb_structure_checking/dat/commands.hlp' 2026-09-02T16:41:37,565 adding 'biobb_structure_checking/dat/data_lib.json' 2026-09-02T16:41:37,568 adding 'biobb_structure_checking/dat/modRes/modSER.json' 2026-09-02T16:41:37,570 adding 'biobb_structure_checking/dat/modRes/modTHR.json' 2026-09-02T16:41:37,572 adding 'biobb_structure_checking/dat/modRes/modTYR.json' 2026-09-02T16:41:37,585 adding 'biobb_structure_checking/dat/modRes/modres.json' 2026-09-02T16:41:37,599 adding 'biobb_structure_checking/dat/modRes/modres_phospho.json' 2026-09-02T16:41:37,602 adding 'biobb_structure_checking/libs/__init__.py' 2026-09-02T16:41:37,604 adding 'biobb_structure_checking/libs/data_lib_manager.py' 2026-09-02T16:41:37,606 adding 'biobb_structure_checking/libs/residue_lib_manager.py' 2026-09-02T16:41:37,608 adding 'biobb_structure_checking/modelling/__init__.py' 2026-09-02T16:41:37,610 adding 'biobb_structure_checking/modelling/chainsdata.py' 2026-09-02T16:41:37,612 adding 'biobb_structure_checking/modelling/modelsdata.py' 2026-09-02T16:41:37,614 adding 'biobb_structure_checking/modelling/residue_set.py' 2026-09-02T16:41:37,618 adding 'biobb_structure_checking/modelling/sequencedata.py' 2026-09-02T16:41:37,620 adding 'biobb_structure_checking/modelling/structuredata.py' 2026-09-02T16:41:37,625 adding 'biobb_structure_checking/modelling/utils.py' 2026-09-02T16:41:37,628 adding 'biobb_structure_checking/pdbio/PDBIO_extended.py' 2026-09-02T16:41:37,629 adding 'biobb_structure_checking/pdbio/__init__.py' 2026-09-02T16:41:37,631 adding 'biobb_structure_checking/pdbio/bare_builder.py' 2026-09-02T16:41:37,632 adding 'biobb_structure_checking/pdbio/json_writer.py' 2026-09-02T16:41:37,634 adding 'biobb_structure_checking/pdbio/mmb_server.py' 2026-09-02T16:41:37,636 adding 'biobb_structure_checking/pdbio/param_input.py' 2026-09-02T16:41:37,640 adding 'biobb_structure_checking-3.16.3.dist-info/licenses/LICENSE' 2026-09-02T16:41:37,642 adding 'biobb_structure_checking-3.16.3.dist-info/METADATA' 2026-09-02T16:41:37,643 adding 'biobb_structure_checking-3.16.3.dist-info/WHEEL' 2026-09-02T16:41:37,644 adding 'biobb_structure_checking-3.16.3.dist-info/entry_points.txt' 2026-09-02T16:41:37,646 adding 'biobb_structure_checking-3.16.3.dist-info/top_level.txt' 2026-09-02T16:41:37,648 adding 'biobb_structure_checking-3.16.3.dist-info/RECORD' 2026-09-02T16:41:37,652 removing build/bdist.linux-armv7l/wheel 2026-09-02T16:41:37,778 Building wheel for biobb-structure-checking (setup.py): finished with status 'done' 2026-09-02T16:41:37,783 Created wheel for biobb-structure-checking: filename=biobb_structure_checking-3.16.3-py3-none-any.whl size=199664 sha256=8171c03093584fdfc5f79e192e754dc1c4ef7c6ae9bee7ba38b0a3fa689c5830 2026-09-02T16:41:37,784 Stored in directory: /tmp/pip-ephem-wheel-cache-oroys4a6/wheels/4e/43/37/9da7299ca2a1b52e39b662508a9b0d7dfc966a3def4ed735cc 2026-09-02T16:41:37,797 Successfully built biobb-structure-checking 2026-09-02T16:41:37,805 Removed build tracker: '/tmp/pip-build-tracker-mdsaziee'