2026-09-04T13:42:56,252 Created temporary directory: /tmp/pip-ephem-wheel-cache-nr5yb594
2026-09-04T13:42:56,254 Created temporary directory: /tmp/pip-build-tracker-e1p38mov
2026-09-04T13:42:56,255 Initialized build tracking at /tmp/pip-build-tracker-e1p38mov
2026-09-04T13:42:56,255 Created build tracker: /tmp/pip-build-tracker-e1p38mov
2026-09-04T13:42:56,256 Entered build tracker: /tmp/pip-build-tracker-e1p38mov
2026-09-04T13:42:56,257 Created temporary directory: /tmp/pip-wheel-dshp81n2
2026-09-04T13:42:56,260 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-09-04T13:42:56,262 Created temporary directory: /tmp/pip-ephem-wheel-cache-naa8r8pj
2026-09-04T13:42:56,284 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-09-04T13:42:56,288 2 location(s) to search for versions of papyrus-scripts:
2026-09-04T13:42:56,288 * https://pypi.org/simple/papyrus-scripts/
2026-09-04T13:42:56,288 * https://www.piwheels.org/simple/papyrus-scripts/
2026-09-04T13:42:56,289 Fetching project page and analyzing links: https://pypi.org/simple/papyrus-scripts/
2026-09-04T13:42:56,290 Getting page https://pypi.org/simple/papyrus-scripts/
2026-09-04T13:42:56,291 Found index url https://pypi.org/simple
2026-09-04T13:42:56,523 Fetched page https://pypi.org/simple/papyrus-scripts/ as application/vnd.pypi.simple.v1+json
2026-09-04T13:42:56,529   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/b5/19/95564c6182f53424b98a9b226fad2732a775e1b03240f98026d1f4a31c09/papyrus_scripts-1.0.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,529   Found link https://files.pythonhosted.org/packages/a8/fa/c9965193e37d2e8d7d546604d0995edc8d5117401823c1db7f86b4039889/papyrus_scripts-1.0.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.0
2026-09-04T13:42:56,530   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/40/cb/13f41607756a77e4cd805fa9b08a8bc3ee15e5db1a8c072793d70b9af909/papyrus_scripts-1.0.1-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,531   Found link https://files.pythonhosted.org/packages/9e/74/fbeebe2236ef7fac6e618ef9340b1d0bd356968d8035d4e4c8d3518b2aef/papyrus_scripts-1.0.1.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.1
2026-09-04T13:42:56,532   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/37/e6/ce2206c4a5147ad1ce46002653ebea21ec6a11d1e14c8efb8ab1ce937503/papyrus_scripts-1.0.2-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,532   Found link https://files.pythonhosted.org/packages/6b/54/6ae4f489632303221c4e7e55bf7277cd1c8bbc6061531e898dcee8383ada/papyrus_scripts-1.0.2.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.2
2026-09-04T13:42:56,533   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/8f/3b/fefbe990c401b882b359c3827b6b8df211ee4722139c16133308b00515e4/papyrus_scripts-1.0.3-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,534   Found link https://files.pythonhosted.org/packages/c0/be/ef1fc8c69ba39ecf9d4a6d42ffcf25f07a7f8912fe1c15f1e77b40be8f90/papyrus_scripts-1.0.3.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 1.0.3
2026-09-04T13:42:56,534   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/7e/e4/88b6ad50b83e4845adb2ff52aeb8cfcfe5889546f64e73524d12b014f2cb/papyrus_scripts-2.0.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,535   Found link https://files.pythonhosted.org/packages/23/25/8dcbf7c4f30f10570ca5725953c1cf575520a085d4261646f77e65b113ea/papyrus_scripts-2.0.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.0.0
2026-09-04T13:42:56,536   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/18/ea/22077156d9a642d92bb910a325a2771ec1276a64a8180dd22d4dbcd48120/papyrus_scripts-2.0.0.post1-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,536   Found link https://files.pythonhosted.org/packages/fa/b5/1a7c04f6af8915d8e54aa79ce50fff0371564b71e24d1c01a8634e12403e/papyrus_scripts-2.0.0.post1.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.0.0.post1
2026-09-04T13:42:56,537   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/38/90/97998d0619abeb876dc3e116cc5ef77ce7af1b6f90ece79c210736ab251b/papyrus_scripts-2.1.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,537   Found link https://files.pythonhosted.org/packages/ce/ac/2a01174cfac28e03cbd72dfa18ba99b46f4141e0065b141ec4b5c05e4961/papyrus_scripts-2.1.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.1.0
2026-09-04T13:42:56,538   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/5f/64/e4f6cfa478c47ad5556dd73cc3b0f410517711071ff29107907013a6ba3e/papyrus_scripts-2.1.1-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,538   Found link https://files.pythonhosted.org/packages/1e/51/7384b55851506dee3ef93465a5e7150b29ec51102cdf997ea3c711217764/papyrus_scripts-2.1.1.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.1.1
2026-09-04T13:42:56,539   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/f5/8b/5fabcdf896025c5adc78506ead7474acfa4c948ae443da30e31849c8a88d/papyrus_scripts-2.1.2-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,540   Found link https://files.pythonhosted.org/packages/ee/f0/19be885063770d063eb2df3ee7a15ada9aaa5916b14746fff2dac24b0c62/papyrus_scripts-2.1.2.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.1.2
2026-09-04T13:42:56,540   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/ed/7a/d8d446a8191add3d5998edb3341a653ca93b32f5bc3b0df5f051aa815ee5/papyrus_scripts-2.1.3-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,541   Found link https://files.pythonhosted.org/packages/6e/90/4390e6b155f51843412887b4667b0f8a1d537ec7eb0b710497c47d31b401/papyrus_scripts-2.1.3.tar.gz (from https://pypi.org/simple/papyrus-scripts/), version: 2.1.3
2026-09-04T13:42:56,542   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/00/e4/e6f7412accd0bca62641f7e0d68b7c6e03bbccfe19bfa9b5e231f47757f7/papyrus_scripts-3.0.0-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) (requires-python:>=3.11)
2026-09-04T13:42:56,543   Found link https://files.pythonhosted.org/packages/6c/e1/99006ddec9abd44d8dfb581e2ddf9d25e309c9e55c916487936a1c56f04b/papyrus_scripts-3.0.0.tar.gz (from https://pypi.org/simple/papyrus-scripts/) (requires-python:>=3.11), version: 3.0.0
2026-09-04T13:42:56,543   Skipping link: No binaries permitted for papyrus-scripts: https://files.pythonhosted.org/packages/f4/a7/ce2e0d5bff02fe6b548135c0d6f2d6e842349b2e9f8834731dfa110e5619/papyrus_scripts-3.0.1-py3-none-any.whl (from https://pypi.org/simple/papyrus-scripts/) (requires-python:>=3.11)
2026-09-04T13:42:56,544   Found link https://files.pythonhosted.org/packages/aa/a3/6b4f8a1897850a8bc488e6130544bb48215aa366acfde6f19440733e2819/papyrus_scripts-3.0.1.tar.gz (from https://pypi.org/simple/papyrus-scripts/) (requires-python:>=3.11), version: 3.0.1
2026-09-04T13:42:56,545 Fetching project page and analyzing links: https://www.piwheels.org/simple/papyrus-scripts/
2026-09-04T13:42:56,546 Getting page https://www.piwheels.org/simple/papyrus-scripts/
2026-09-04T13:42:56,547 Found index url https://www.piwheels.org/simple
2026-09-04T13:42:56,734 Fetched page https://www.piwheels.org/simple/papyrus-scripts/ as text/html
2026-09-04T13:42:56,738   Skipping link: No binaries permitted for papyrus-scripts: https://www.piwheels.org/simple/papyrus-scripts/papyrus_scripts-3.0.0-py3-none-any.whl#sha256=5196585c9a618edb5465b74b229695525b49b32b6cba70e533a5e25ecd66497e (from https://www.piwheels.org/simple/papyrus-scripts/) (requires-python:>=3.11)
2026-09-04T13:42:56,739   Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.1.3-py3-none-any.whl#sha256=facb0bf542c28bafbed6e7de01dd9044e837f9aeddbfa91e67d984e4517ee58b (from https://www.piwheels.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,739   Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.1.2-py3-none-any.whl#sha256=58dfcd81c716271d84568b04aaf3795a4a3b7f5a6bf886b8788af8faff86bd45 (from https://www.piwheels.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,740   Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.1.1-py3-none-any.whl#sha256=54ed2dabf00803fd4f22e085f19c7610741c6da12a5c9ad623f39c66f962250c (from https://www.piwheels.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,740   Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.1.0-py3-none-any.whl#sha256=387843ac43cc3dec52b7f4c7450de103400a849c9e9db4e2ae9f6d22edaf1164 (from https://www.piwheels.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,741   Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.0.0.post1-py3-none-any.whl#sha256=8c3d99b9e12fddc57fc9a8ae2fa2a6cb7ff056ea17e04f5f40498bc033bad65b (from https://www.piwheels.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,741   Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-2.0.0-py3-none-any.whl#sha256=59b7c1af7bcffad2a4864853071d1d2023f12d66c2d94c77307da77d571736f3 (from https://www.piwheels.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,742   Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.3-py3-none-any.whl#sha256=d8726fad87c54033c1ccfb24793cfe931514385e31f985decbd4db0359161f21 (from https://www.piwheels.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,742   Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.2-py3-none-any.whl#sha256=0c5c255057debeeb39bc7754d5580f5017739a5511dfc5c8a0a4cea4381a216b (from https://www.piwheels.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,743   Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.1-py3-none-any.whl#sha256=a9a05d11a4dab2af708d68a7d80f14bde89175c2655db1d624fecddf5e188e07 (from https://www.piwheels.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,745   Skipping link: No binaries permitted for papyrus-scripts: https://archive1.piwheels.org/simple/papyrus-scripts/papyrus_scripts-1.0.0-py3-none-any.whl#sha256=0547595805abc574ec34f214d521dcf762c43e1c7da898f1bb95a2c6eda24460 (from https://www.piwheels.org/simple/papyrus-scripts/)
2026-09-04T13:42:56,745 Skipping link: not a file: https://www.piwheels.org/simple/papyrus-scripts/
2026-09-04T13:42:56,746 Skipping link: not a file: https://pypi.org/simple/papyrus-scripts/
2026-09-04T13:42:56,766 Given no hashes to check 1 links for project 'papyrus-scripts': discarding no candidates
2026-09-04T13:42:56,784 Collecting papyrus-scripts==3.0.1
2026-09-04T13:42:56,787   Created temporary directory: /tmp/pip-unpack-yoll1wy0
2026-09-04T13:42:56,950   Downloading papyrus_scripts-3.0.1.tar.gz (247 kB)
2026-09-04T13:42:57,191   Added papyrus-scripts==3.0.1 from https://files.pythonhosted.org/packages/aa/a3/6b4f8a1897850a8bc488e6130544bb48215aa366acfde6f19440733e2819/papyrus_scripts-3.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-e1p38mov'
2026-09-04T13:42:57,197   Created temporary directory: /tmp/pip-build-env-5gi1mryx
2026-09-04T13:42:57,202   Installing build dependencies: started
2026-09-04T13:42:57,203   Running command pip subprocess to install build dependencies
2026-09-04T13:42:58,386   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-09-04T13:42:59,277   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-09-04T13:42:59,301   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-09-04T13:43:01,118   Collecting setuptools>=77.0.0
2026-09-04T13:43:01,119     Obtaining dependency information for setuptools>=77.0.0 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata
2026-09-04T13:43:01,133     Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB)
2026-09-04T13:43:01,604   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB)
2026-09-04T13:43:01,701   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB)
2026-09-04T13:43:04,744   Installing collected packages: setuptools
2026-09-04T13:43:07,009   Successfully installed setuptools-84.0.0
2026-09-04T13:43:07,278   Installing build dependencies: finished with status 'done'
2026-09-04T13:43:07,285   Getting requirements to build wheel: started
2026-09-04T13:43:07,286   Running command Getting requirements to build wheel
2026-09-04T13:43:08,002   running egg_info
2026-09-04T13:43:08,008   writing src/papyrus_scripts.egg-info/PKG-INFO
2026-09-04T13:43:08,014   writing dependency_links to src/papyrus_scripts.egg-info/dependency_links.txt
2026-09-04T13:43:08,016   writing entry points to src/papyrus_scripts.egg-info/entry_points.txt
2026-09-04T13:43:08,019   writing requirements to src/papyrus_scripts.egg-info/requires.txt
2026-09-04T13:43:08,021   writing top-level names to src/papyrus_scripts.egg-info/top_level.txt
2026-09-04T13:43:08,047   reading manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt'
2026-09-04T13:43:08,051   adding license file 'LICENSE'
2026-09-04T13:43:08,055   writing manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt'
2026-09-04T13:43:08,154   Getting requirements to build wheel: finished with status 'done'
2026-09-04T13:43:08,157   Created temporary directory: /tmp/pip-modern-metadata-7a_3gt9o
2026-09-04T13:43:08,159   Preparing metadata (pyproject.toml): started
2026-09-04T13:43:08,161   Running command Preparing metadata (pyproject.toml)
2026-09-04T13:43:08,820   running dist_info
2026-09-04T13:43:08,830   creating /tmp/pip-modern-metadata-7a_3gt9o/papyrus_scripts.egg-info
2026-09-04T13:43:08,832   writing /tmp/pip-modern-metadata-7a_3gt9o/papyrus_scripts.egg-info/PKG-INFO
2026-09-04T13:43:08,838   writing dependency_links to /tmp/pip-modern-metadata-7a_3gt9o/papyrus_scripts.egg-info/dependency_links.txt
2026-09-04T13:43:08,840   writing entry points to /tmp/pip-modern-metadata-7a_3gt9o/papyrus_scripts.egg-info/entry_points.txt
2026-09-04T13:43:08,843   writing requirements to /tmp/pip-modern-metadata-7a_3gt9o/papyrus_scripts.egg-info/requires.txt
2026-09-04T13:43:08,844   writing top-level names to /tmp/pip-modern-metadata-7a_3gt9o/papyrus_scripts.egg-info/top_level.txt
2026-09-04T13:43:08,846   writing manifest file '/tmp/pip-modern-metadata-7a_3gt9o/papyrus_scripts.egg-info/SOURCES.txt'
2026-09-04T13:43:08,867   reading manifest file '/tmp/pip-modern-metadata-7a_3gt9o/papyrus_scripts.egg-info/SOURCES.txt'
2026-09-04T13:43:08,869   adding license file 'LICENSE'
2026-09-04T13:43:08,873   writing manifest file '/tmp/pip-modern-metadata-7a_3gt9o/papyrus_scripts.egg-info/SOURCES.txt'
2026-09-04T13:43:08,874   creating '/tmp/pip-modern-metadata-7a_3gt9o/papyrus_scripts-3.0.1.dist-info'
2026-09-04T13:43:09,004   Preparing metadata (pyproject.toml): finished with status 'done'
2026-09-04T13:43:09,009   Source in /tmp/pip-wheel-dshp81n2/papyrus-scripts_d24ef94034fc421d9dbd49aba41db2f5 has version 3.0.1, which satisfies requirement papyrus-scripts==3.0.1 from https://files.pythonhosted.org/packages/aa/a3/6b4f8a1897850a8bc488e6130544bb48215aa366acfde6f19440733e2819/papyrus_scripts-3.0.1.tar.gz
2026-09-04T13:43:09,010   Removed papyrus-scripts==3.0.1 from https://files.pythonhosted.org/packages/aa/a3/6b4f8a1897850a8bc488e6130544bb48215aa366acfde6f19440733e2819/papyrus_scripts-3.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-e1p38mov'
2026-09-04T13:43:09,017 Created temporary directory: /tmp/pip-unpack-0kjd2rio
2026-09-04T13:43:09,017 Building wheels for collected packages: papyrus-scripts
2026-09-04T13:43:09,022   Created temporary directory: /tmp/pip-wheel-9onjlil9
2026-09-04T13:43:09,022   Destination directory: /tmp/pip-wheel-9onjlil9
2026-09-04T13:43:09,024   Building wheel for papyrus-scripts (pyproject.toml): started
2026-09-04T13:43:09,025   Running command Building wheel for papyrus-scripts (pyproject.toml)
2026-09-04T13:43:09,663   running bdist_wheel
2026-09-04T13:43:09,681   running build
2026-09-04T13:43:09,682   running build_py
2026-09-04T13:43:09,688   creating build/lib/papyrus_scripts
2026-09-04T13:43:09,690   copying src/papyrus_scripts/fingerprint.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,693   copying src/papyrus_scripts/modelling.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,696   copying src/papyrus_scripts/__main__.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,698   copying src/papyrus_scripts/subsim_search.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,702   copying src/papyrus_scripts/preprocess.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,705   copying src/papyrus_scripts/oop.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,708   copying src/papyrus_scripts/neuralnet.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,711   copying src/papyrus_scripts/reader.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,714   copying src/papyrus_scripts/download.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,717   copying src/papyrus_scripts/cli.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,720   copying src/papyrus_scripts/__init__.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,721   copying src/papyrus_scripts/matchRCSB.py -> build/lib/papyrus_scripts
2026-09-04T13:43:09,725   creating build/lib/papyrus_scripts/utils
2026-09-04T13:43:09,726   copying src/papyrus_scripts/utils/mol_reader.py -> build/lib/papyrus_scripts/utils
2026-09-04T13:43:09,729   copying src/papyrus_scripts/utils/IO.py -> build/lib/papyrus_scripts/utils
2026-09-04T13:43:09,733   copying src/papyrus_scripts/utils/UniprotMatch.py -> build/lib/papyrus_scripts/utils
2026-09-04T13:43:09,735   copying src/papyrus_scripts/utils/__init__.py -> build/lib/papyrus_scripts/utils
2026-09-04T13:43:09,737   running egg_info
2026-09-04T13:43:09,747   writing src/papyrus_scripts.egg-info/PKG-INFO
2026-09-04T13:43:09,752   writing dependency_links to src/papyrus_scripts.egg-info/dependency_links.txt
2026-09-04T13:43:09,754   writing entry points to src/papyrus_scripts.egg-info/entry_points.txt
2026-09-04T13:43:09,757   writing requirements to src/papyrus_scripts.egg-info/requires.txt
2026-09-04T13:43:09,758   writing top-level names to src/papyrus_scripts.egg-info/top_level.txt
2026-09-04T13:43:09,769   reading manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt'
2026-09-04T13:43:09,773   adding license file 'LICENSE'
2026-09-04T13:43:09,777   writing manifest file 'src/papyrus_scripts.egg-info/SOURCES.txt'
2026-09-04T13:43:09,781   copying src/papyrus_scripts/utils/aliases.json -> build/lib/papyrus_scripts/utils
2026-09-04T13:43:09,784   copying src/papyrus_scripts/utils/links.json -> build/lib/papyrus_scripts/utils
2026-09-04T13:43:09,797   installing to build/bdist.linux-armv7l/wheel
2026-09-04T13:43:09,798   running install
2026-09-04T13:43:09,820   running install_lib
2026-09-04T13:43:09,826   creating build/bdist.linux-armv7l/wheel
2026-09-04T13:43:09,828   creating build/bdist.linux-armv7l/wheel/papyrus_scripts
2026-09-04T13:43:09,829   copying build/lib/papyrus_scripts/fingerprint.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,832   copying build/lib/papyrus_scripts/modelling.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,834   copying build/lib/papyrus_scripts/__main__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,836   copying build/lib/papyrus_scripts/subsim_search.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,840   copying build/lib/papyrus_scripts/preprocess.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,843   creating build/bdist.linux-armv7l/wheel/papyrus_scripts/utils
2026-09-04T13:43:09,844   copying build/lib/papyrus_scripts/utils/aliases.json -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2026-09-04T13:43:09,846   copying build/lib/papyrus_scripts/utils/mol_reader.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2026-09-04T13:43:09,849   copying build/lib/papyrus_scripts/utils/IO.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2026-09-04T13:43:09,852   copying build/lib/papyrus_scripts/utils/UniprotMatch.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2026-09-04T13:43:09,854   copying build/lib/papyrus_scripts/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2026-09-04T13:43:09,856   copying build/lib/papyrus_scripts/utils/links.json -> build/bdist.linux-armv7l/wheel/./papyrus_scripts/utils
2026-09-04T13:43:09,860   copying build/lib/papyrus_scripts/oop.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,863   copying build/lib/papyrus_scripts/neuralnet.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,866   copying build/lib/papyrus_scripts/reader.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,868   copying build/lib/papyrus_scripts/download.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,872   copying build/lib/papyrus_scripts/cli.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,874   copying build/lib/papyrus_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,876   copying build/lib/papyrus_scripts/matchRCSB.py -> build/bdist.linux-armv7l/wheel/./papyrus_scripts
2026-09-04T13:43:09,878   running install_egg_info
2026-09-04T13:43:09,883   Copying src/papyrus_scripts.egg-info to build/bdist.linux-armv7l/wheel/./papyrus_scripts-3.0.1-py3.11.egg-info
2026-09-04T13:43:09,894   running install_scripts
2026-09-04T13:43:09,906   creating build/bdist.linux-armv7l/wheel/papyrus_scripts-3.0.1.dist-info/WHEEL
2026-09-04T13:43:09,909   creating '/tmp/pip-wheel-9onjlil9/.tmp-7jcpwyo9/papyrus_scripts-3.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-09-04T13:43:09,911   adding 'papyrus_scripts/__init__.py'
2026-09-04T13:43:09,913   adding 'papyrus_scripts/__main__.py'
2026-09-04T13:43:09,916   adding 'papyrus_scripts/cli.py'
2026-09-04T13:43:09,923   adding 'papyrus_scripts/download.py'
2026-09-04T13:43:09,926   adding 'papyrus_scripts/fingerprint.py'
2026-09-04T13:43:09,928   adding 'papyrus_scripts/matchRCSB.py'
2026-09-04T13:43:09,933   adding 'papyrus_scripts/modelling.py'
2026-09-04T13:43:09,936   adding 'papyrus_scripts/neuralnet.py'
2026-09-04T13:43:09,944   adding 'papyrus_scripts/oop.py'
2026-09-04T13:43:09,950   adding 'papyrus_scripts/preprocess.py'
2026-09-04T13:43:09,953   adding 'papyrus_scripts/reader.py'
2026-09-04T13:43:09,962   adding 'papyrus_scripts/subsim_search.py'
2026-09-04T13:43:09,972   adding 'papyrus_scripts/utils/IO.py'
2026-09-04T13:43:09,974   adding 'papyrus_scripts/utils/UniprotMatch.py'
2026-09-04T13:43:09,975   adding 'papyrus_scripts/utils/__init__.py'
2026-09-04T13:43:09,976   adding 'papyrus_scripts/utils/aliases.json'
2026-09-04T13:43:09,980   adding 'papyrus_scripts/utils/links.json'
2026-09-04T13:43:09,984   adding 'papyrus_scripts/utils/mol_reader.py'
2026-09-04T13:43:09,987   adding 'papyrus_scripts-3.0.1.dist-info/licenses/LICENSE'
2026-09-04T13:43:09,988   adding 'papyrus_scripts-3.0.1.dist-info/METADATA'
2026-09-04T13:43:09,989   adding 'papyrus_scripts-3.0.1.dist-info/WHEEL'
2026-09-04T13:43:09,990   adding 'papyrus_scripts-3.0.1.dist-info/entry_points.txt'
2026-09-04T13:43:09,991   adding 'papyrus_scripts-3.0.1.dist-info/top_level.txt'
2026-09-04T13:43:09,992   adding 'papyrus_scripts-3.0.1.dist-info/RECORD'
2026-09-04T13:43:09,995   removing build/bdist.linux-armv7l/wheel
2026-09-04T13:43:10,101   Building wheel for papyrus-scripts (pyproject.toml): finished with status 'done'
2026-09-04T13:43:10,108   Created wheel for papyrus-scripts: filename=papyrus_scripts-3.0.1-py3-none-any.whl size=148813 sha256=40bb93753e61423e145103624a8d194adb1fa8fa334775928eb9c5c0fa27fddb
2026-09-04T13:43:10,110   Stored in directory: /tmp/pip-ephem-wheel-cache-naa8r8pj/wheels/d4/3f/b6/86c9e1495b84237c5e26868f1eaec81046b8c48294e39166d6
2026-09-04T13:43:10,122 Successfully built papyrus-scripts
2026-09-04T13:43:10,129 Removed build tracker: '/tmp/pip-build-tracker-e1p38mov'