2026-09-06T15:32:44,668 Created temporary directory: /tmp/pip-ephem-wheel-cache-rhdu3beb
2026-09-06T15:32:44,670 Created temporary directory: /tmp/pip-build-tracker-8au6a9yj
2026-09-06T15:32:44,670 Initialized build tracking at /tmp/pip-build-tracker-8au6a9yj
2026-09-06T15:32:44,671 Created build tracker: /tmp/pip-build-tracker-8au6a9yj
2026-09-06T15:32:44,671 Entered build tracker: /tmp/pip-build-tracker-8au6a9yj
2026-09-06T15:32:44,672 Created temporary directory: /tmp/pip-wheel-m31b27z_
2026-09-06T15:32:44,674 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-09-06T15:32:44,677 Created temporary directory: /tmp/pip-ephem-wheel-cache-26b04l5d
2026-09-06T15:32:44,698 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-09-06T15:32:44,702 2 location(s) to search for versions of topiary:
2026-09-06T15:32:44,702 * https://pypi.org/simple/topiary/
2026-09-06T15:32:44,702 * https://www.piwheels.org/simple/topiary/
2026-09-06T15:32:44,702 Fetching project page and analyzing links: https://pypi.org/simple/topiary/
2026-09-06T15:32:44,703 Getting page https://pypi.org/simple/topiary/
2026-09-06T15:32:44,704 Found index url https://pypi.org/simple
2026-09-06T15:32:44,942 Fetched page https://pypi.org/simple/topiary/ as application/vnd.pypi.simple.v1+json
2026-09-06T15:32:44,980   Found link https://files.pythonhosted.org/packages/38/f6/60c60d77093e492c9a139a87514fa230296ca94080fec6d479f22bf5cfcd/topiary-0.0.0.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.0
2026-09-06T15:32:44,981   Found link https://files.pythonhosted.org/packages/40/7f/4c423389757bae0b47f7640d8b66bf9d5f5bbf6e387faa2dfa34fa0b809e/topiary-0.0.1.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.1
2026-09-06T15:32:44,982   Found link https://files.pythonhosted.org/packages/29/a2/eb5e9dec8dafc167f24cd4234a8d75b815411ea8b6af4724e8218038d52e/topiary-0.0.2.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.2
2026-09-06T15:32:44,983   Found link https://files.pythonhosted.org/packages/42/e4/e8450b31eac4229cfbe29bc87b8594ac1b03bc06f3272996cb3d50038c15/topiary-0.0.3.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.3
2026-09-06T15:32:44,984   Found link https://files.pythonhosted.org/packages/bc/ea/f0de38c2ba7970d28fe8404cd7bd32b2d041e7d3dc2027d7efff390e213c/topiary-0.0.4.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.4
2026-09-06T15:32:44,984   Found link https://files.pythonhosted.org/packages/92/85/fd3447ea12115e2274295bbdd728707a1e3870cf5e32dd63caa5ce17e0b2/topiary-0.0.5.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.5
2026-09-06T15:32:44,985   Found link https://files.pythonhosted.org/packages/03/98/eaceb57e744d5324a242e9b18e2e137e6c6960dca63c5cbfdb462d60e79f/topiary-0.0.6.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.6
2026-09-06T15:32:44,986   Found link https://files.pythonhosted.org/packages/6b/a2/9ac4d08a189dfa90e576d8bf8769249673d2dfd9cd2a9464674c56892501/topiary-0.0.7.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.7
2026-09-06T15:32:44,987   Found link https://files.pythonhosted.org/packages/6a/a5/a8446cebca687d391bbb67d26873adbbfa878d9b057a613f7756568911bb/topiary-0.0.8.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.8
2026-09-06T15:32:44,987   Found link https://files.pythonhosted.org/packages/19/7f/bf4d188a19634549a26b6b995a60146510435b5687a4c9afa5af01da4215/topiary-0.0.9.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.9
2026-09-06T15:32:44,988   Found link https://files.pythonhosted.org/packages/bb/b2/e507265c740fa360bf05b47f9e957ad5f8803233dd7c892979ee6d772e9b/topiary-0.0.10.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.10
2026-09-06T15:32:44,989   Found link https://files.pythonhosted.org/packages/d8/d8/d85f730eddd20a2df9d378a4d58a96d39e700c4fa109f1ead1a8f2509170/topiary-0.0.13.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.13
2026-09-06T15:32:44,990   Found link https://files.pythonhosted.org/packages/1a/e9/c5aad02530e1d64fc410dfc2e4eb32d4ace35d2367b6dbf9927b655e2af4/topiary-0.0.14.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.14
2026-09-06T15:32:44,991   Found link https://files.pythonhosted.org/packages/b1/4f/8410302ba478be063f5ba41028ad88db4dde24f4a2096643b9c55109b176/topiary-0.0.15.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.15
2026-09-06T15:32:44,991   Found link https://files.pythonhosted.org/packages/49/3a/ea68dc25b9c97e7fabecbbb5138c7be94eb3a9426f211db68f4c1ecd9ed4/topiary-0.0.16.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.16
2026-09-06T15:32:44,992   Found link https://files.pythonhosted.org/packages/6b/51/a9a4af9588db8d60bd38ca7851f85308bde8023ce09b12cb61687f68e2f6/topiary-0.0.17.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.17
2026-09-06T15:32:44,992   Found link https://files.pythonhosted.org/packages/ca/3c/01cb5d9e817ff2195d4579330d8b2d8b42e890d27109c8dd671253ea0a25/topiary-0.0.18.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.18
2026-09-06T15:32:44,993   Found link https://files.pythonhosted.org/packages/0e/4a/fbc62d6da7aeb1fa64fabd8d7f0836f5a079b0a098d9b2812b3158070672/topiary-0.0.19.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.19
2026-09-06T15:32:44,993   Found link https://files.pythonhosted.org/packages/8a/f7/6b7e6863daa1cb5125420e68e85c4da83490b0700a0cd743ff0505f49df0/topiary-0.0.20.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.20
2026-09-06T15:32:44,994   Found link https://files.pythonhosted.org/packages/0c/18/4fce39e2b363296333b7833c4624ad0fdfc799aab2771af18d5b13006be0/topiary-0.0.21.tar.gz (from https://pypi.org/simple/topiary/), version: 0.0.21
2026-09-06T15:32:44,995   Found link https://files.pythonhosted.org/packages/4f/8d/cfcda3d246e6a9dfd10fcda4de1b3cba171ffcf0508d3b8807f02765af1b/topiary-0.1.0.tar.gz (from https://pypi.org/simple/topiary/), version: 0.1.0
2026-09-06T15:32:44,995   Found link https://files.pythonhosted.org/packages/f4/24/61c55b78e2597bbec4941edcf4161328f725f96836e20dd3b55e4d9d5fc3/topiary-0.1.1-0.tar.gz (from https://pypi.org/simple/topiary/), version: 0.1.1-0
2026-09-06T15:32:44,996   Found link https://files.pythonhosted.org/packages/c4/6e/c3e2335ab2b5be7be8772ddd20bb158915ce5fdd0b11f8d55dea779638de/topiary-0.1.2.tar.gz (from https://pypi.org/simple/topiary/), version: 0.1.2
2026-09-06T15:32:44,997   Found link https://files.pythonhosted.org/packages/d3/fe/3b790a8e6401f8d7cfb50de1a4005e237f6c91ffa541c41524520c71e881/topiary-1.2.0.tar.gz (from https://pypi.org/simple/topiary/), version: 1.2.0
2026-09-06T15:32:44,998   Found link https://files.pythonhosted.org/packages/66/cd/6713c0c5cb9b5902943586a918f000ad4521e5d24a4ff32ee99b1d211167/topiary-1.2.1.tar.gz (from https://pypi.org/simple/topiary/), version: 1.2.1
2026-09-06T15:32:44,998   Found link https://files.pythonhosted.org/packages/52/f0/5083f0d77ce33732322b146ed0088bee776750a07d1ef52b65a5c4f3fe21/topiary-2.0.0.tar.gz (from https://pypi.org/simple/topiary/), version: 2.0.0
2026-09-06T15:32:44,999   Found link https://files.pythonhosted.org/packages/e2/13/7f3c8607ff3671a0d9f1f4eb58cb7f602ce540138329dee9a3bd581c84ea/topiary-2.1.0.tar.gz (from https://pypi.org/simple/topiary/), version: 2.1.0
2026-09-06T15:32:45,000   Found link https://files.pythonhosted.org/packages/3e/c7/ce747df518eafaab429e57814d08d6416c5d59fc06e8643b8a472ef0c1d2/topiary-2.2.0.tar.gz (from https://pypi.org/simple/topiary/), version: 2.2.0
2026-09-06T15:32:45,000   Found link https://files.pythonhosted.org/packages/8a/d1/5ff5c84ea223c671f94c9f7df80481663f3bd0755bdbdd597e83fe52ca81/topiary-3.0.0.tar.gz (from https://pypi.org/simple/topiary/), version: 3.0.0
2026-09-06T15:32:45,001   Found link https://files.pythonhosted.org/packages/f0/e5/e560a7ec932717d57aa88285331314549bfb43565b014416db30f826ce61/topiary-3.0.2.tar.gz (from https://pypi.org/simple/topiary/), version: 3.0.2
2026-09-06T15:32:45,002   Found link https://files.pythonhosted.org/packages/b2/0b/b44009ee261861f74d13b506f7d69a1c44f2df1990d046f7a852a5fe6540/topiary-3.0.6.tar.gz (from https://pypi.org/simple/topiary/), version: 3.0.6
2026-09-06T15:32:45,003   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/92/7e/4f1c24c87e1139b70f771b5b8248f28879e904b54c6b7bbf09ba52b3b019/topiary-4.0.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,004   Found link https://files.pythonhosted.org/packages/ac/7a/aeb62683f7f6927facf941ff7afec97b8e4870a2ffd50769d17da45d2d39/topiary-4.0.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.0.0
2026-09-06T15:32:45,004   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/5d/42/858c5ac8bdb667c2175917adcdf342bbd83a0a5dff92c78b9bc4250b678f/topiary-4.0.1-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,005   Found link https://files.pythonhosted.org/packages/14/09/67a3423dc279acfc48e7597c866f55b375a3b927257eed1d5e6a89d5743a/topiary-4.0.1.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.0.1
2026-09-06T15:32:45,006   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/df/cd/7ec888a9a462fd4e98bd23f28d44abccc196e8db31a8ca52275092c6b1cd/topiary-4.1.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,006   Found link https://files.pythonhosted.org/packages/cf/87/435da8d2f668d1e6ef06cbe0d7b5be5bc5b7dddeea194da661bd177c8464/topiary-4.1.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.1.0
2026-09-06T15:32:45,007   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/ac/34/3b0e9e182a15143f915de95583f5f9ae4a0af31973dcb5cf5c5dce04665f/topiary-4.2.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,008   Found link https://files.pythonhosted.org/packages/d0/da/88cb66c3e8c3e2511a1fbf3c987e27882e46f234ba44c19600b7c828787c/topiary-4.2.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.2.0
2026-09-06T15:32:45,009   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/ef/2a/9ed13bfcb0a373e03cf4e72ba2bfa9b40c4901dfb40317ba3f31df471dd7/topiary-4.2.1-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,010   Found link https://files.pythonhosted.org/packages/12/07/506911d38ca3c79569b36a1df628d6c5ae1d6f3717b7d66725325cd44c61/topiary-4.2.1.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.2.1
2026-09-06T15:32:45,010   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/59/2e/cb900a5b91dc5ca7b73c4a7db7e4a52e8305a1b7cb907d01846d6d4dbec4/topiary-4.3.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,011   Found link https://files.pythonhosted.org/packages/52/f5/5562c03f4048966e2bd27264ca60ad2d438b350a6092016d58fe8af0607f/topiary-4.3.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.3.0
2026-09-06T15:32:45,012   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/00/b0/7532d1d0d6f03d2c26e7e02f059ea9c3c2d04e1f464d5fa21a76768e4835/topiary-4.3.1-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,013   Found link https://files.pythonhosted.org/packages/dc/da/1df0b540aeb1db5aac978549b92a93ca0a5b6d6d9a63bee47df284d24d98/topiary-4.3.1.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.3.1
2026-09-06T15:32:45,014   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/76/c7/4712955ed5555ab5487734b7608dcb614604097ac36f5746bffe56b783aa/topiary-4.3.2-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,015   Found link https://files.pythonhosted.org/packages/4e/43/42cf14fecd4f5129816f90747c6594400bed574ae6c7d48354cc5115e5bf/topiary-4.3.2.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.3.2
2026-09-06T15:32:45,016   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/f4/79/57aa4eafe901be83a98397a11e79182e30862c99ca28815a8691ebe64d19/topiary-4.4.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,017   Found link https://files.pythonhosted.org/packages/6d/d6/59b4157e9b3d446648b7625954b484a190ebd9303c8213186ef0f8cf652f/topiary-4.4.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.4.0
2026-09-06T15:32:45,017   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/f8/ea/226fefac235e8b1b21b9171970bcdd05976161d2a65b4b6a1574c3a8b92c/topiary-4.5.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,018   Found link https://files.pythonhosted.org/packages/56/9b/5ee22541bdae815cb3805958f6588e6f7ff69b2a2476545e91f395358003/topiary-4.5.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.5.0
2026-09-06T15:32:45,019   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/e9/9a/b1af5d6951d50d3e263e4ae4be4ce80d814e35cd087946c8fd51c639390b/topiary-4.5.1-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,019   Found link https://files.pythonhosted.org/packages/bf/7c/c7b209b304deef6f6214b60cbeae423078ebbb34cc2d7fc16afb5bf74d98/topiary-4.5.1.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.5.1
2026-09-06T15:32:45,020   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/95/89/525be83ec61551cf375098855236a5b07f9e98d6dff2b6b35c1315902390/topiary-4.6.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,021   Found link https://files.pythonhosted.org/packages/cd/48/df9b2ec7f9daa800061a3741766ba49fa286a4f879170aa17701aa57201e/topiary-4.6.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.6.0
2026-09-06T15:32:45,022   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/44/67/1cc6b1a25ae7e2ac83cb89ffb4bfe6bdc9d2c2ec4c8bd24a473ddf3fb478/topiary-4.7.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,023   Found link https://files.pythonhosted.org/packages/97/63/4a3f93dd8b07a01c82be1288565d8a8927e6d0e00db1653b57551ca43dcf/topiary-4.7.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.7.0
2026-09-06T15:32:45,023   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/ba/a7/6577205faf64bb98644a85b1981faa93dbbda5ea605a4d91e3e7224bc85e/topiary-4.8.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,024   Found link https://files.pythonhosted.org/packages/1b/ec/20ae491552f5ceace9ce328bb8e92e1536bd1a98c469896fea1121fec539/topiary-4.8.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.8.0
2026-09-06T15:32:45,025   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/0b/80/9fb9836c535019b504d5b4da9f8761e020d37ef419c8be58516ef60de08a/topiary-4.9.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,026   Found link https://files.pythonhosted.org/packages/e2/61/5738cfb1b80d9d5b4ea4c9bece8ebf9b86271e78e10b46accaa29f7d0eb8/topiary-4.9.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.9.0
2026-09-06T15:32:45,027   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/83/36/cf889b52bb4bb739e79ef42b39c326211b5cda7053aec2ea4af56c2e7bd3/topiary-4.10.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,028   Found link https://files.pythonhosted.org/packages/c9/e2/6b39f1ac9f39f7b2ea2c395573172e64e1a7fce2aba98438343c451a4fdc/topiary-4.10.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.10.0
2026-09-06T15:32:45,028   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/3c/6a/0406ba2899d0d7ddb7cf5ad1d87d2b192befde2cb4f2e075f5016257183f/topiary-4.11.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,029   Found link https://files.pythonhosted.org/packages/31/32/c14290a982db897b2de6c25278fbf06395098a22554a90c80e3a53da2081/topiary-4.11.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 4.11.0
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2026-09-06T15:32:45,054   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/f7/40/6dd67e7cd71f54124d04be499729c3ade15809a7301ea7b44534ce8cf033/topiary-5.10.2-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
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2026-09-06T15:32:45,134   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/51/05/7836a274a07af5d04d7ee42224995487ad0b62faa0e90f0d5ca9b4d2c1cb/topiary-5.47.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
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2026-09-06T15:32:45,137   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/10/21/ad91c6319e2d3fc52011c7c8b1fb4f124d6d2fd1050aa4eeff85926e23ba/topiary-5.48.1-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
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2026-09-06T15:32:45,141   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/50/5f/5d777fd7a645a9e7778533f5b119274e30bdc30ed9f836e4b2c635aeba80/topiary-5.49.1-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
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2026-09-06T15:32:45,144   Found link https://files.pythonhosted.org/packages/51/e2/4d3658ef0ea535a6dec0f90e1b73ea81d33cac23991c413cd521399141ee/topiary-5.51.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 5.51.0
2026-09-06T15:32:45,144   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/ab/8b/13efd2dd8c2b096768bc37119e0e59df51a9a44c5261befd050eec4ee091/topiary-5.52.0-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,145   Found link https://files.pythonhosted.org/packages/e7/7b/5ae837c73d58da10f8c49db6c2549dfc08404e39d68331accf9ced3263e3/topiary-5.52.0.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 5.52.0
2026-09-06T15:32:45,146   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/e3/62/14dbef617783c5192b4cbdae2a07adbf7b2734882e2da356db0718ab092a/topiary-5.52.1-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,147   Found link https://files.pythonhosted.org/packages/64/d3/8d47ffa5cb97899b560914daa887049bb950e59eb5b5efc7862acadbaf33/topiary-5.52.1.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 5.52.1
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2026-09-06T15:32:45,149   Found link https://files.pythonhosted.org/packages/8a/37/85fe2a32c13413b9c55f3be177e7626fd016bdc9e36800f7b7f1ee9ca369/topiary-5.52.2.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 5.52.2
2026-09-06T15:32:45,149   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/eb/cc/d9eec02a4fae9332055e2d94ff61c7ad9402dd04a446304543f4265d2a6f/topiary-5.52.3-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,150   Found link https://files.pythonhosted.org/packages/34/cb/c731bd27f35fc815746cec87312a7a06a7992f4ba26dd0d75b980e67ca2c/topiary-5.52.3.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 5.52.3
2026-09-06T15:32:45,151   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/33/83/caab5ecd2a695fdb02cc58245db66520738b40c629f8582bc84d0520d2e9/topiary-5.52.4-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,152   Found link https://files.pythonhosted.org/packages/49/50/23c76317d9da3f380aa5d6cfffde8767895f2c79bc51a2f1e6878a24dc60/topiary-5.52.4.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 5.52.4
2026-09-06T15:32:45,153   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/94/0f/98de07f78db1ad96e359bb135fadaf0ea63f22c9735b22809d3d8c2302f1/topiary-5.52.5-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,154   Found link https://files.pythonhosted.org/packages/70/65/e02ffbb623128a001e8ed72d99b5ef325a0ee7ebd948e4ad1304d9018ccb/topiary-5.52.5.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 5.52.5
2026-09-06T15:32:45,154   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/d4/83/34b9472232ebf2a7ec70677bf63b4940039b7c7ead73b0facfae707ed620/topiary-5.52.6-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,155   Found link https://files.pythonhosted.org/packages/8f/7c/6fea1ee5e74b8c7a6264332e9f97d67c02ce152548c4ab44e8fea2f090eb/topiary-5.52.6.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 5.52.6
2026-09-06T15:32:45,156   Skipping link: No binaries permitted for topiary: https://files.pythonhosted.org/packages/79/38/7822668fde6d729c6b4f9362d968b7fe76d82d082f8b44197b21cf9fce03/topiary-5.52.7-py3-none-any.whl (from https://pypi.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,157   Found link https://files.pythonhosted.org/packages/90/f7/2f61cf88e7ef081818154eb1b0ae48771382c092d761459373feb4361bc6/topiary-5.52.7.tar.gz (from https://pypi.org/simple/topiary/) (requires-python:>=3.9), version: 5.52.7
2026-09-06T15:32:45,158 Fetching project page and analyzing links: https://www.piwheels.org/simple/topiary/
2026-09-06T15:32:45,158 Getting page https://www.piwheels.org/simple/topiary/
2026-09-06T15:32:45,160 Found index url https://www.piwheels.org/simple
2026-09-06T15:32:45,358 Fetched page https://www.piwheels.org/simple/topiary/ as text/html
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2026-09-06T15:32:45,395   Skipping link: No binaries permitted for topiary: https://www.piwheels.org/simple/topiary/topiary-5.52.1-py3-none-any.whl#sha256=f255e28252630d42395f6369880a703239c0296888cbbb293be0cb2a05bca0c2 (from https://www.piwheels.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,395   Skipping link: No binaries permitted for topiary: https://www.piwheels.org/simple/topiary/topiary-5.52.0-py3-none-any.whl#sha256=d9b3defd8fc884b7d86f3cbfee308eb4b5edaf9c00619de51024feabdf98bead (from https://www.piwheels.org/simple/topiary/) (requires-python:>=3.9)
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2026-09-06T15:32:45,397   Skipping link: No binaries permitted for topiary: https://www.piwheels.org/simple/topiary/topiary-5.49.1-py3-none-any.whl#sha256=b12e0e89be967447ef172e3af10bc13c9642088d593dc399b0be6aaa400cdad0 (from https://www.piwheels.org/simple/topiary/) (requires-python:>=3.9)
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2026-09-06T15:32:45,398   Skipping link: No binaries permitted for topiary: https://www.piwheels.org/simple/topiary/topiary-5.48.1-py3-none-any.whl#sha256=f08988145bd1f85e9eb3107b8d79a87eff8e6680f57b7c49b9a706e3e2e55526 (from https://www.piwheels.org/simple/topiary/) (requires-python:>=3.9)
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2026-09-06T15:32:45,401   Skipping link: No binaries permitted for topiary: https://www.piwheels.org/simple/topiary/topiary-5.44.0-py3-none-any.whl#sha256=63ac5d8b932dfb631333513f3e1b5225dcb18d7cefbdea8d6098ad75e0d9e6ad (from https://www.piwheels.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,402   Skipping link: No binaries permitted for topiary: https://www.piwheels.org/simple/topiary/topiary-5.43.0-py3-none-any.whl#sha256=a082833be3f5462a21049a9fbfadb647b33c9dfb4fc4a0a179b7b85973e8f1ef (from https://www.piwheels.org/simple/topiary/) (requires-python:>=3.9)
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2026-09-06T15:32:45,445   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-4.1.0-py3-none-any.whl#sha256=12d648d2024cd779738a89a84c36ad78fd6dc24771fde74c865b174d4cf9f3f0 (from https://www.piwheels.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,446   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-4.0.1-py3-none-any.whl#sha256=9de960662eeb8ff6dd66c2b9ad248b8aab89bfb38a1686b46455203ddab35029 (from https://www.piwheels.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,446   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-4.0.0-py3-none-any.whl#sha256=56965eea765f6d31c879ce179bee7f0f3efad79829b782938aa6571f012a774f (from https://www.piwheels.org/simple/topiary/) (requires-python:>=3.9)
2026-09-06T15:32:45,447   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-3.0.6-py3-none-any.whl#sha256=bbfaba8444095e39ed9ed8d14e7460f26f7c5d785e452bd44bcb533ef77fc8e4 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,448   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-3.0.2-py3-none-any.whl#sha256=8a9776d2965569019b41fbae3578df6ac218b66915ac8b5e209b73b7df1e4ac0 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,448   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-3.0.0-py3-none-any.whl#sha256=687e9928c772d363c854ecaf8e073eba63cbdaf8b974690d8f83f522fcd7723f (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,449   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-2.2.0-py3-none-any.whl#sha256=afb7b09b18f345de86420e8f1d61284c526a3bdcb0e352639c7383105203b2f9 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,449   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-2.1.0-py3-none-any.whl#sha256=6a54b133dc04b282ecb6254205dd09896a559c40a793a5470a1e8d77ed2244b1 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,450   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-2.0.0-py3-none-any.whl#sha256=bf376c02311efd5c80a0793be89ae4a34d82ab5397b5861dd664ce96d3e48a38 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,451   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-1.2.1-py3-none-any.whl#sha256=bc761dde043d0b6aa59153fc4cef4c3f4173d9cc2af622fc8263962c2fc21f0d (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,451   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-1.2.0-py3-none-any.whl#sha256=311e8283cb60ad0d52bad801d50774f6634e70f8998da593fb6bd3b2bc6ffa65 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,452   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.1.2-py3-none-any.whl#sha256=e7a1c96210356871a2273cd29f1899190e3ed5683d4a4572088cd945d1f5e758 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,453   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.1.0-py3-none-any.whl#sha256=46f5f6e4d2071e7711aa10d069defad14ffdf877b255780830a6cf6e42b61d5f (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,453   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.21-py3-none-any.whl#sha256=3983f7c3fbcff8c1a577833c364c6e99c1d98ac9955c3696439f59d8faa8eeda (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,454   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.20-py3-none-any.whl#sha256=3fb43551e5d6896e3e54f5a33a29922523c71c15b3849801206d04a8c4805350 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,454   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.19-py3-none-any.whl#sha256=0bdd9a0f991558f802326026fec79812c40392013a16fa27d697a9c37d0cf12c (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,455   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.18-py3-none-any.whl#sha256=9e812f2912a401afd7be2c4905413e0c158d97a57ddd49a478edb0b8d9805a28 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,455   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.17-py3-none-any.whl#sha256=9caa65a5a200720510e1c38a256ba0ee4702a443d0c0f9e56724aaa16b907517 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,456   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.16-py3-none-any.whl#sha256=1cce9bca3cbb426edd71bbf7bbd1c069b0498c46d67ce549315317b0f75ab1d6 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,456   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.15-py3-none-any.whl#sha256=ca5ae7481368a4fb5d839d1ac3cab6823cbebeb2733ef0e9c6b2275854eb895f (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,457   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.14-py3-none-any.whl#sha256=48e8744f89c7f03717c8e36a17ede28b495b845c7106cb5638c216db27054fad (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,457   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.13-py3-none-any.whl#sha256=588396661f87bea8be890d90c6800ac4825d06ae7db1c50c98a1978fe9c45bd3 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,458   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.10-py3-none-any.whl#sha256=56bea0cecf1273a44cd2e51ad294714c41e0fb7d9cc0b16382709573c4ec9443 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,459   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.9-py3-none-any.whl#sha256=da4dc4334fdf5cb89b68356e11737c8dab86fd100b9c7979e95eac3dc58fbd6d (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,459   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.8-py3-none-any.whl#sha256=12b4f283d8fbedbd316649be8833a17fee852097f1e5cd8963264e6c4a2721e0 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,460   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.7-py3-none-any.whl#sha256=6e23dbd38e19c12b658a8373b501f1e929c6fd3420749dee506a82b60b190d42 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,460   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.6-py3-none-any.whl#sha256=f3b597a0744c3a7540c3ffe571b8f4fad3d2ad40ddc6198952e2aee7c96ff82c (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,461   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.5-py3-none-any.whl#sha256=52f489eb5876b619e9988ee4c2fabec4df1a087c2f67f96cbb99ece92eb57576 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,462   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.4-py3-none-any.whl#sha256=5c94fb56e54399233efc5f88a6f6cfe2914773c5b2aa67a24f6ddf6089561b3b (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,462   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.3-py3-none-any.whl#sha256=197f9da38cd367d77acaec6282f0d22aefaf1e1ab6754379f671902958348f15 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,463   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.2-py3-none-any.whl#sha256=accaff90bafe6c929aece0f65b8ccedd45839064bf361d8f69bfefd543127ec2 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,463   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.1-py3-none-any.whl#sha256=6743a02aee34bc7567913bbe5c15a321924d9e1cb2c15f956e4ebb9b321707f4 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,464   Skipping link: No binaries permitted for topiary: https://archive1.piwheels.org/simple/topiary/topiary-0.0.0-py3-none-any.whl#sha256=a4de4e13dc8561c43fd350094d3cbc3267e0faacf5e65b94501ef15affdf51e6 (from https://www.piwheels.org/simple/topiary/)
2026-09-06T15:32:45,464 Skipping link: not a file: https://www.piwheels.org/simple/topiary/
2026-09-06T15:32:45,465 Skipping link: not a file: https://pypi.org/simple/topiary/
2026-09-06T15:32:45,499 Given no hashes to check 1 links for project 'topiary': discarding no candidates
2026-09-06T15:32:45,523 Collecting topiary==5.52.7
2026-09-06T15:32:45,526   Created temporary directory: /tmp/pip-unpack-558ipm5d
2026-09-06T15:32:45,707   Downloading topiary-5.52.7.tar.gz (559 kB)
2026-09-06T15:32:46,418   Added topiary==5.52.7 from https://files.pythonhosted.org/packages/90/f7/2f61cf88e7ef081818154eb1b0ae48771382c092d761459373feb4361bc6/topiary-5.52.7.tar.gz to build tracker '/tmp/pip-build-tracker-8au6a9yj'
2026-09-06T15:32:46,426   Created temporary directory: /tmp/pip-build-env-f20yfbd1
2026-09-06T15:32:46,432   Installing build dependencies: started
2026-09-06T15:32:46,434   Running command pip subprocess to install build dependencies
2026-09-06T15:32:47,603   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-09-06T15:32:48,020   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-09-06T15:32:48,042   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-09-06T15:32:49,885   Collecting setuptools>=64
2026-09-06T15:32:49,886     Obtaining dependency information for setuptools>=64 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata
2026-09-06T15:32:49,901     Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB)
2026-09-06T15:32:50,147   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB)
2026-09-06T15:32:50,238   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB)
2026-09-06T15:32:53,007   Installing collected packages: setuptools
2026-09-06T15:32:55,295   Successfully installed setuptools-84.0.0
2026-09-06T15:32:55,565   Installing build dependencies: finished with status 'done'
2026-09-06T15:32:55,572   Getting requirements to build wheel: started
2026-09-06T15:32:55,573   Running command Getting requirements to build wheel
2026-09-06T15:32:56,273   /tmp/pip-build-env-f20yfbd1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-09-06T15:32:56,273   !!

2026-09-06T15:32:56,274           ********************************************************************************
2026-09-06T15:32:56,275           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-09-06T15:32:56,276           License :: OSI Approved :: Apache Software License

2026-09-06T15:32:56,277           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-09-06T15:32:56,277           ********************************************************************************

2026-09-06T15:32:56,278   !!
2026-09-06T15:32:56,279     dist._finalize_license_expression()
2026-09-06T15:32:56,279   /tmp/pip-build-env-f20yfbd1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-09-06T15:32:56,280   !!

2026-09-06T15:32:56,281           ********************************************************************************
2026-09-06T15:32:56,281           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-09-06T15:32:56,282           License :: OSI Approved :: Apache Software License

2026-09-06T15:32:56,283           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-09-06T15:32:56,284           ********************************************************************************

2026-09-06T15:32:56,285   !!
2026-09-06T15:32:56,286     self._finalize_license_expression()
2026-09-06T15:32:56,287   running egg_info
2026-09-06T15:32:56,291   writing topiary.egg-info/PKG-INFO
2026-09-06T15:32:56,296   writing dependency_links to topiary.egg-info/dependency_links.txt
2026-09-06T15:32:56,298   writing entry points to topiary.egg-info/entry_points.txt
2026-09-06T15:32:56,300   writing requirements to topiary.egg-info/requires.txt
2026-09-06T15:32:56,301   writing top-level names to topiary.egg-info/top_level.txt
2026-09-06T15:32:56,335   reading manifest file 'topiary.egg-info/SOURCES.txt'
2026-09-06T15:32:56,346   reading manifest template 'MANIFEST.in'
2026-09-06T15:32:56,353   warning: no files found matching '*' under directory 'topiary/data'
2026-09-06T15:32:56,353   adding license file 'LICENSE'
2026-09-06T15:32:56,363   writing manifest file 'topiary.egg-info/SOURCES.txt'
2026-09-06T15:32:56,461   Getting requirements to build wheel: finished with status 'done'
2026-09-06T15:32:56,464   Created temporary directory: /tmp/pip-modern-metadata-at465y4y
2026-09-06T15:32:56,466   Preparing metadata (pyproject.toml): started
2026-09-06T15:32:56,468   Running command Preparing metadata (pyproject.toml)
2026-09-06T15:32:57,135   /tmp/pip-build-env-f20yfbd1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-09-06T15:32:57,135   !!

2026-09-06T15:32:57,136           ********************************************************************************
2026-09-06T15:32:57,137           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-09-06T15:32:57,138           License :: OSI Approved :: Apache Software License

2026-09-06T15:32:57,139           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-09-06T15:32:57,140           ********************************************************************************

2026-09-06T15:32:57,141   !!
2026-09-06T15:32:57,142     dist._finalize_license_expression()
2026-09-06T15:32:57,142   /tmp/pip-build-env-f20yfbd1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-09-06T15:32:57,143   !!

2026-09-06T15:32:57,144           ********************************************************************************
2026-09-06T15:32:57,144           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-09-06T15:32:57,145           License :: OSI Approved :: Apache Software License

2026-09-06T15:32:57,146           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-09-06T15:32:57,147           ********************************************************************************

2026-09-06T15:32:57,148   !!
2026-09-06T15:32:57,148     self._finalize_license_expression()
2026-09-06T15:32:57,149   running dist_info
2026-09-06T15:32:57,159   creating /tmp/pip-modern-metadata-at465y4y/topiary.egg-info
2026-09-06T15:32:57,160   writing /tmp/pip-modern-metadata-at465y4y/topiary.egg-info/PKG-INFO
2026-09-06T15:32:57,166   writing dependency_links to /tmp/pip-modern-metadata-at465y4y/topiary.egg-info/dependency_links.txt
2026-09-06T15:32:57,168   writing entry points to /tmp/pip-modern-metadata-at465y4y/topiary.egg-info/entry_points.txt
2026-09-06T15:32:57,170   writing requirements to /tmp/pip-modern-metadata-at465y4y/topiary.egg-info/requires.txt
2026-09-06T15:32:57,171   writing top-level names to /tmp/pip-modern-metadata-at465y4y/topiary.egg-info/top_level.txt
2026-09-06T15:32:57,173   writing manifest file '/tmp/pip-modern-metadata-at465y4y/topiary.egg-info/SOURCES.txt'
2026-09-06T15:32:57,204   reading manifest file '/tmp/pip-modern-metadata-at465y4y/topiary.egg-info/SOURCES.txt'
2026-09-06T15:32:57,206   reading manifest template 'MANIFEST.in'
2026-09-06T15:32:57,212   warning: no files found matching '*' under directory 'topiary/data'
2026-09-06T15:32:57,213   adding license file 'LICENSE'
2026-09-06T15:32:57,221   writing manifest file '/tmp/pip-modern-metadata-at465y4y/topiary.egg-info/SOURCES.txt'
2026-09-06T15:32:57,222   creating '/tmp/pip-modern-metadata-at465y4y/topiary-5.52.7.dist-info'
2026-09-06T15:32:57,350   Preparing metadata (pyproject.toml): finished with status 'done'
2026-09-06T15:32:57,356   Source in /tmp/pip-wheel-m31b27z_/topiary_567ffae4a7294b598585d2223a2b72e9 has version 5.52.7, which satisfies requirement topiary==5.52.7 from https://files.pythonhosted.org/packages/90/f7/2f61cf88e7ef081818154eb1b0ae48771382c092d761459373feb4361bc6/topiary-5.52.7.tar.gz
2026-09-06T15:32:57,357   Removed topiary==5.52.7 from https://files.pythonhosted.org/packages/90/f7/2f61cf88e7ef081818154eb1b0ae48771382c092d761459373feb4361bc6/topiary-5.52.7.tar.gz from build tracker '/tmp/pip-build-tracker-8au6a9yj'
2026-09-06T15:32:57,365 Created temporary directory: /tmp/pip-unpack-kr6n36np
2026-09-06T15:32:57,366 Building wheels for collected packages: topiary
2026-09-06T15:32:57,370   Created temporary directory: /tmp/pip-wheel-5xb8xhm7
2026-09-06T15:32:57,370   Destination directory: /tmp/pip-wheel-5xb8xhm7
2026-09-06T15:32:57,372   Building wheel for topiary (pyproject.toml): started
2026-09-06T15:32:57,374   Running command Building wheel for topiary (pyproject.toml)
2026-09-06T15:32:58,005   /tmp/pip-build-env-f20yfbd1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-09-06T15:32:58,005   !!

2026-09-06T15:32:58,007           ********************************************************************************
2026-09-06T15:32:58,007           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-09-06T15:32:58,008           License :: OSI Approved :: Apache Software License

2026-09-06T15:32:58,010           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-09-06T15:32:58,010           ********************************************************************************

2026-09-06T15:32:58,011   !!
2026-09-06T15:32:58,012     dist._finalize_license_expression()
2026-09-06T15:32:58,012   /tmp/pip-build-env-f20yfbd1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-09-06T15:32:58,013   !!

2026-09-06T15:32:58,014           ********************************************************************************
2026-09-06T15:32:58,014           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-09-06T15:32:58,016           License :: OSI Approved :: Apache Software License

2026-09-06T15:32:58,017           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-09-06T15:32:58,018           ********************************************************************************

2026-09-06T15:32:58,020   !!
2026-09-06T15:32:58,021     self._finalize_license_expression()
2026-09-06T15:32:58,021   running bdist_wheel
2026-09-06T15:32:58,032   running build
2026-09-06T15:32:58,033   running build_py
2026-09-06T15:32:58,039   creating build/lib/topiary
2026-09-06T15:32:58,041   copying topiary/wide.py -> build/lib/topiary
2026-09-06T15:32:58,044   copying topiary/io_isovar.py -> build/lib/topiary
2026-09-06T15:32:58,046   copying topiary/optional_dependencies.py -> build/lib/topiary
2026-09-06T15:32:58,048   copying topiary/io_protein_fragment.py -> build/lib/topiary
2026-09-06T15:32:58,050   copying topiary/properties.py -> build/lib/topiary
2026-09-06T15:32:58,053   copying topiary/prediction_columns.py -> build/lib/topiary
2026-09-06T15:32:58,055   copying topiary/amino_acids.py -> build/lib/topiary
2026-09-06T15:32:58,058   copying topiary/inputs.py -> build/lib/topiary
2026-09-06T15:32:58,060   copying topiary/sources.py -> build/lib/topiary
2026-09-06T15:32:58,062   copying topiary/cached.py -> build/lib/topiary
2026-09-06T15:32:58,065   copying topiary/predictor.py -> build/lib/topiary
2026-09-06T15:32:58,069   copying topiary/__init__.py -> build/lib/topiary
2026-09-06T15:32:58,071   copying topiary/protein_fragment.py -> build/lib/topiary
2026-09-06T15:32:58,074   copying topiary/evidence.py -> build/lib/topiary
2026-09-06T15:32:58,077   copying topiary/io_pvacseq.py -> build/lib/topiary
2026-09-06T15:32:58,080   copying topiary/filters.py -> build/lib/topiary
2026-09-06T15:32:58,082   copying topiary/self_proteome.py -> build/lib/topiary
2026-09-06T15:32:58,085   copying topiary/sequence_helpers.py -> build/lib/topiary
2026-09-06T15:32:58,087   copying topiary/result.py -> build/lib/topiary
2026-09-06T15:32:58,090   copying topiary/io_lens.py -> build/lib/topiary
2026-09-06T15:32:58,092   copying topiary/io.py -> build/lib/topiary
2026-09-06T15:32:58,097   creating build/lib/tests
2026-09-06T15:32:58,099   copying tests/test_fragment_paths.py -> build/lib/tests
2026-09-06T15:32:58,101   copying tests/test_twin_conformance.py -> build/lib/tests
2026-09-06T15:32:58,104   copying tests/test_consumer_workflows.py -> build/lib/tests
2026-09-06T15:32:58,106   copying tests/optional_dependencies.py -> build/lib/tests
2026-09-06T15:32:58,108   copying tests/test_empty_and_collision_guards.py -> build/lib/tests
2026-09-06T15:32:58,110   copying tests/test_predict_from_variants_refactor.py -> build/lib/tests
2026-09-06T15:32:58,113   copying tests/test_cli_cached_predictor.py -> build/lib/tests
2026-09-06T15:32:58,115   copying tests/test_coverage_gaps.py -> build/lib/tests
2026-09-06T15:32:58,118   copying tests/test_sources.py -> build/lib/tests
2026-09-06T15:32:58,120   copying tests/test_predictor_internals.py -> build/lib/tests
2026-09-06T15:32:58,122   copying tests/test_predict_from_fragments.py -> build/lib/tests
2026-09-06T15:32:58,125   copying tests/test_per_peptide_alleles.py -> build/lib/tests
2026-09-06T15:32:58,127   copying tests/common.py -> build/lib/tests
2026-09-06T15:32:58,129   copying tests/test_prediction_columns.py -> build/lib/tests
2026-09-06T15:32:58,131   copying tests/test_args_outputs.py -> build/lib/tests
2026-09-06T15:32:58,133   copying tests/test_epitopes_from_commandline_args.py -> build/lib/tests
2026-09-06T15:32:58,134   copying tests/test_deploy_script.py -> build/lib/tests
2026-09-06T15:32:58,136   copying tests/test_variant_expression_filters.py -> build/lib/tests
2026-09-06T15:32:58,138   copying tests/test_result.py -> build/lib/tests
2026-09-06T15:32:58,141   copying tests/test_lens_binding_override.py -> build/lib/tests
2026-09-06T15:32:58,145   copying tests/test_cli_ranking.py -> build/lib/tests
2026-09-06T15:32:58,148   copying tests/test_peptide_property_node.py -> build/lib/tests
2026-09-06T15:32:58,150   copying tests/test_protein_fragment.py -> build/lib/tests
2026-09-06T15:32:58,152   copying tests/test_pirlygenes_test_selection.py -> build/lib/tests
2026-09-06T15:32:58,154   copying tests/test_validation_and_edge_cases.py -> build/lib/tests
2026-09-06T15:32:58,156   copying tests/test_named_allele_projection.py -> build/lib/tests
2026-09-06T15:32:58,159   copying tests/test_amino_acids.py -> build/lib/tests
2026-09-06T15:32:58,162   copying tests/test_io_pvacseq.py -> build/lib/tests
2026-09-06T15:32:58,165   copying tests/test_load_stringtie_gtf_fpkm.py -> build/lib/tests
2026-09-06T15:32:58,168   copying tests/test_cross_sample_evidence.py -> build/lib/tests
2026-09-06T15:32:58,171   copying tests/test_allele_set.py -> build/lib/tests
2026-09-06T15:32:58,173   copying tests/test_isovar_run.py -> build/lib/tests
2026-09-06T15:32:58,175   copying tests/test_cli_script.py -> build/lib/tests
2026-09-06T15:32:58,177   copying tests/test_gate_scripts.py -> build/lib/tests
2026-09-06T15:32:58,180   copying tests/test_load_cufflinks_fpkm.py -> build/lib/tests
2026-09-06T15:32:58,182   copying tests/test_shared_context.py -> build/lib/tests
2026-09-06T15:32:58,184   copying tests/test_mutant_epitope_predictions_class2.py -> build/lib/tests
2026-09-06T15:32:58,186   copying tests/test_cli_protein_changes.py -> build/lib/tests
2026-09-06T15:32:58,188   copying tests/test_expression_integration.py -> build/lib/tests
2026-09-06T15:32:58,190   copying tests/test_rna_evidence_units.py -> build/lib/tests
2026-09-06T15:32:58,193   copying tests/test_sort_ordering.py -> build/lib/tests
2026-09-06T15:32:58,195   copying tests/__init__.py -> build/lib/tests
2026-09-06T15:32:58,196   copying tests/test_kind_mhc_dependence.py -> build/lib/tests
2026-09-06T15:32:58,199   copying tests/test_inputs.py -> build/lib/tests
2026-09-06T15:32:58,201   copying tests/test_expression_loader.py -> build/lib/tests
2026-09-06T15:32:58,203   copying tests/test_frameshift_fragments.py -> build/lib/tests
2026-09-06T15:32:58,206   copying tests/test_end_to_end.py -> build/lib/tests
2026-09-06T15:32:58,208   copying tests/test_public_helpers.py -> build/lib/tests
2026-09-06T15:32:58,210   copying tests/test_cached_predictor.py -> build/lib/tests
2026-09-06T15:32:58,213   copying tests/test_integration.py -> build/lib/tests
2026-09-06T15:32:58,215   copying tests/test_dsl_extensions.py -> build/lib/tests
2026-09-06T15:32:58,218   copying tests/test_symmetric_evidence.py -> build/lib/tests
2026-09-06T15:32:58,221   copying tests/test_context_forwarding.py -> build/lib/tests
2026-09-06T15:32:58,224   copying tests/test_edge_case_fixtures.py -> build/lib/tests
2026-09-06T15:32:58,227   copying tests/test_dataframe.py -> build/lib/tests
2026-09-06T15:32:58,229   copying tests/test_dsl_polish.py -> build/lib/tests
2026-09-06T15:32:58,231   copying tests/test_lens_versions.py -> build/lib/tests
2026-09-06T15:32:58,234   copying tests/test_cache_allele_nulls.py -> build/lib/tests
2026-09-06T15:32:58,236   copying tests/test_fragment_evidence.py -> build/lib/tests
2026-09-06T15:32:58,238   copying tests/test_combine_predictor_results.py -> build/lib/tests
2026-09-06T15:32:58,241   copying tests/test_default_versions.py -> build/lib/tests
2026-09-06T15:32:58,243   copying tests/test_absent_vs_empty_audit.py -> build/lib/tests
2026-09-06T15:32:58,245   copying tests/test_rna_helpers.py -> build/lib/tests
2026-09-06T15:32:58,247   copying tests/test_dsl_roundtrip.py -> build/lib/tests
2026-09-06T15:32:58,249   copying tests/test_wide.py -> build/lib/tests
2026-09-06T15:32:58,252   copying tests/test_ranking.py -> build/lib/tests
2026-09-06T15:32:58,256   copying tests/test_sequence_helpers.py -> build/lib/tests
2026-09-06T15:32:58,258   copying tests/data.py -> build/lib/tests
2026-09-06T15:32:58,260   copying tests/test_cli_coverage.py -> build/lib/tests
2026-09-06T15:32:58,262   copying tests/test_allele_free_kinds.py -> build/lib/tests
2026-09-06T15:32:58,264   copying tests/test_self_proteome.py -> build/lib/tests
2026-09-06T15:32:58,267   copying tests/test_from_predictions.py -> build/lib/tests
2026-09-06T15:32:58,269   copying tests/test_peptide_view.py -> build/lib/tests
2026-09-06T15:32:58,272   copying tests/test_allele_class.py -> build/lib/tests
2026-09-06T15:32:58,274   copying tests/test_effect_expression_filters.py -> build/lib/tests
2026-09-06T15:32:58,275   copying tests/test_shared_expression_vocabulary.py -> build/lib/tests
2026-09-06T15:32:58,278   copying tests/test_best_allele.py -> build/lib/tests
2026-09-06T15:32:58,280   copying tests/test_sources_optional.py -> build/lib/tests
2026-09-06T15:32:58,282   copying tests/test_io.py -> build/lib/tests
2026-09-06T15:32:58,284   copying tests/test_direct_input_regressions.py -> build/lib/tests
2026-09-06T15:32:58,286   copying tests/test_cache_key_allele_set.py -> build/lib/tests
2026-09-06T15:32:58,288   copying tests/test_scoped_filters.py -> build/lib/tests
2026-09-06T15:32:58,290   copying tests/test_peptide_mutation_interval.py -> build/lib/tests
2026-09-06T15:32:58,292   copying tests/test_padding.py -> build/lib/tests
2026-09-06T15:32:58,294   copying tests/test_io_lens.py -> build/lib/tests
2026-09-06T15:32:58,296   copying tests/test_kind_support.py -> build/lib/tests
2026-09-06T15:32:58,298   copying tests/test_canonical_methods.py -> build/lib/tests
2026-09-06T15:32:58,301   copying tests/test_lazy_imports.py -> build/lib/tests
2026-09-06T15:32:58,302   copying tests/test_group_keys.py -> build/lib/tests
2026-09-06T15:32:58,305   copying tests/test_self_nearest_population.py -> build/lib/tests
2026-09-06T15:32:58,307   copying tests/test_contains_mutant_residues.py -> build/lib/tests
2026-09-06T15:32:58,309   copying tests/test_lens_multi_version.py -> build/lib/tests
2026-09-06T15:32:58,311   copying tests/test_evidence.py -> build/lib/tests
2026-09-06T15:32:58,313   copying tests/test_mutant_epitope_predictions_class1.py -> build/lib/tests
2026-09-06T15:32:58,315   copying tests/conftest.py -> build/lib/tests
2026-09-06T15:32:58,317   creating build/lib/topiary/cli
2026-09-06T15:32:58,318   copying topiary/cli/script.py -> build/lib/topiary/cli
2026-09-06T15:32:58,320   copying topiary/cli/errors.py -> build/lib/topiary/cli
2026-09-06T15:32:58,322   copying topiary/cli/cached_predictor.py -> build/lib/topiary/cli
2026-09-06T15:32:58,324   copying topiary/cli/protein_changes.py -> build/lib/topiary/cli
2026-09-06T15:32:58,326   copying topiary/cli/__init__.py -> build/lib/topiary/cli
2026-09-06T15:32:58,328   copying topiary/cli/rna.py -> build/lib/topiary/cli
2026-09-06T15:32:58,331   copying topiary/cli/args.py -> build/lib/topiary/cli
2026-09-06T15:32:58,334   copying topiary/cli/filtering.py -> build/lib/topiary/cli
2026-09-06T15:32:58,336   copying topiary/cli/outputs.py -> build/lib/topiary/cli
2026-09-06T15:32:58,338   copying topiary/cli/sequence.py -> build/lib/topiary/cli
2026-09-06T15:32:58,340   creating build/lib/topiary/ranking
2026-09-06T15:32:58,341   copying topiary/ranking/parser.py -> build/lib/topiary/ranking
2026-09-06T15:32:58,344   copying topiary/ranking/__init__.py -> build/lib/topiary/ranking
2026-09-06T15:32:58,346   copying topiary/ranking/apply.py -> build/lib/topiary/ranking
2026-09-06T15:32:58,349   copying topiary/ranking/nodes.py -> build/lib/topiary/ranking
2026-09-06T15:32:58,354   creating build/lib/topiary/rna
2026-09-06T15:32:58,355   copying topiary/rna/cufflinks.py -> build/lib/topiary/rna
2026-09-06T15:32:58,357   copying topiary/rna/common.py -> build/lib/topiary/rna
2026-09-06T15:32:58,359   copying topiary/rna/expression_loader.py -> build/lib/topiary/rna
2026-09-06T15:32:58,361   copying topiary/rna/__init__.py -> build/lib/topiary/rna
2026-09-06T15:32:58,363   copying topiary/rna/gtf.py -> build/lib/topiary/rna
2026-09-06T15:32:58,365   running egg_info
2026-09-06T15:32:58,375   writing topiary.egg-info/PKG-INFO
2026-09-06T15:32:58,380   writing dependency_links to topiary.egg-info/dependency_links.txt
2026-09-06T15:32:58,382   writing entry points to topiary.egg-info/entry_points.txt
2026-09-06T15:32:58,384   writing requirements to topiary.egg-info/requires.txt
2026-09-06T15:32:58,385   writing top-level names to topiary.egg-info/top_level.txt
2026-09-06T15:32:58,407   reading manifest file 'topiary.egg-info/SOURCES.txt'
2026-09-06T15:32:58,416   reading manifest template 'MANIFEST.in'
2026-09-06T15:32:58,423   warning: no files found matching '*' under directory 'topiary/data'
2026-09-06T15:32:58,424   adding license file 'LICENSE'
2026-09-06T15:32:58,433   writing manifest file 'topiary.egg-info/SOURCES.txt'
2026-09-06T15:32:58,441   creating build/lib/docs
2026-09-06T15:32:58,442   copying docs/api.md -> build/lib/docs
2026-09-06T15:32:58,445   copying docs/cached.md -> build/lib/docs
2026-09-06T15:32:58,448   copying docs/consumer-guide.md -> build/lib/docs
2026-09-06T15:32:58,452   copying docs/expression-semantics.md -> build/lib/docs
2026-09-06T15:32:58,455   copying docs/fragments.md -> build/lib/docs
2026-09-06T15:32:58,459   copying docs/index.md -> build/lib/docs
2026-09-06T15:32:58,461   copying docs/properties.md -> build/lib/docs
2026-09-06T15:32:58,464   copying docs/pvacseq.md -> build/lib/docs
2026-09-06T15:32:58,467   copying docs/quickstart.md -> build/lib/docs
2026-09-06T15:32:58,470   copying docs/ranking.md -> build/lib/docs
2026-09-06T15:32:58,473   copying docs/self_proteome.md -> build/lib/docs
2026-09-06T15:32:58,476   creating build/lib/tests/data
2026-09-06T15:32:58,477   copying tests/data/BLOSUM62.ncbi -> build/lib/tests/data
2026-09-06T15:32:58,495   installing to build/bdist.linux-armv7l/wheel
2026-09-06T15:32:58,496   running install
2026-09-06T15:32:58,519   running install_lib
2026-09-06T15:32:58,525   creating build/bdist.linux-armv7l/wheel
2026-09-06T15:32:58,527   creating build/bdist.linux-armv7l/wheel/docs
2026-09-06T15:32:58,529   copying build/lib/docs/ranking.md -> build/bdist.linux-armv7l/wheel/./docs
2026-09-06T15:32:58,533   copying build/lib/docs/consumer-guide.md -> build/bdist.linux-armv7l/wheel/./docs
2026-09-06T15:32:58,536   copying build/lib/docs/cached.md -> build/bdist.linux-armv7l/wheel/./docs
2026-09-06T15:32:58,540   copying build/lib/docs/fragments.md -> build/bdist.linux-armv7l/wheel/./docs
2026-09-06T15:32:58,543   copying build/lib/docs/pvacseq.md -> build/bdist.linux-armv7l/wheel/./docs
2026-09-06T15:32:58,546   copying build/lib/docs/api.md -> build/bdist.linux-armv7l/wheel/./docs
2026-09-06T15:32:58,549   copying build/lib/docs/index.md -> build/bdist.linux-armv7l/wheel/./docs
2026-09-06T15:32:58,551   copying build/lib/docs/expression-semantics.md -> build/bdist.linux-armv7l/wheel/./docs
2026-09-06T15:32:58,554   copying build/lib/docs/properties.md -> build/bdist.linux-armv7l/wheel/./docs
2026-09-06T15:32:58,556   copying build/lib/docs/self_proteome.md -> build/bdist.linux-armv7l/wheel/./docs
2026-09-06T15:32:58,558   copying build/lib/docs/quickstart.md -> build/bdist.linux-armv7l/wheel/./docs
2026-09-06T15:32:58,562   creating build/bdist.linux-armv7l/wheel/topiary
2026-09-06T15:32:58,563   copying build/lib/topiary/wide.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,566   copying build/lib/topiary/io_isovar.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,569   copying build/lib/topiary/optional_dependencies.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,571   copying build/lib/topiary/io_protein_fragment.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,575   creating build/bdist.linux-armv7l/wheel/topiary/cli
2026-09-06T15:32:58,577   copying build/lib/topiary/cli/script.py -> build/bdist.linux-armv7l/wheel/./topiary/cli
2026-09-06T15:32:58,579   copying build/lib/topiary/cli/errors.py -> build/bdist.linux-armv7l/wheel/./topiary/cli
2026-09-06T15:32:58,582   copying build/lib/topiary/cli/cached_predictor.py -> build/bdist.linux-armv7l/wheel/./topiary/cli
2026-09-06T15:32:58,585   copying build/lib/topiary/cli/protein_changes.py -> build/bdist.linux-armv7l/wheel/./topiary/cli
2026-09-06T15:32:58,588   copying build/lib/topiary/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/cli
2026-09-06T15:32:58,591   copying build/lib/topiary/cli/rna.py -> build/bdist.linux-armv7l/wheel/./topiary/cli
2026-09-06T15:32:58,594   copying build/lib/topiary/cli/args.py -> build/bdist.linux-armv7l/wheel/./topiary/cli
2026-09-06T15:32:58,597   copying build/lib/topiary/cli/filtering.py -> build/bdist.linux-armv7l/wheel/./topiary/cli
2026-09-06T15:32:58,600   copying build/lib/topiary/cli/outputs.py -> build/bdist.linux-armv7l/wheel/./topiary/cli
2026-09-06T15:32:58,602   copying build/lib/topiary/cli/sequence.py -> build/bdist.linux-armv7l/wheel/./topiary/cli
2026-09-06T15:32:58,604   copying build/lib/topiary/properties.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,607   copying build/lib/topiary/prediction_columns.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,610   copying build/lib/topiary/amino_acids.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,613   copying build/lib/topiary/inputs.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,615   copying build/lib/topiary/sources.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,618   copying build/lib/topiary/cached.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,622   copying build/lib/topiary/predictor.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,627   creating build/bdist.linux-armv7l/wheel/topiary/ranking
2026-09-06T15:32:58,628   copying build/lib/topiary/ranking/parser.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking
2026-09-06T15:32:58,631   copying build/lib/topiary/ranking/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking
2026-09-06T15:32:58,633   copying build/lib/topiary/ranking/apply.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking
2026-09-06T15:32:58,637   copying build/lib/topiary/ranking/nodes.py -> build/bdist.linux-armv7l/wheel/./topiary/ranking
2026-09-06T15:32:58,680   copying build/lib/topiary/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,684   creating build/bdist.linux-armv7l/wheel/topiary/rna
2026-09-06T15:32:58,685   copying build/lib/topiary/rna/cufflinks.py -> build/bdist.linux-armv7l/wheel/./topiary/rna
2026-09-06T15:32:58,689   copying build/lib/topiary/rna/common.py -> build/bdist.linux-armv7l/wheel/./topiary/rna
2026-09-06T15:32:58,691   copying build/lib/topiary/rna/expression_loader.py -> build/bdist.linux-armv7l/wheel/./topiary/rna
2026-09-06T15:32:58,694   copying build/lib/topiary/rna/__init__.py -> build/bdist.linux-armv7l/wheel/./topiary/rna
2026-09-06T15:32:58,697   copying build/lib/topiary/rna/gtf.py -> build/bdist.linux-armv7l/wheel/./topiary/rna
2026-09-06T15:32:58,699   copying build/lib/topiary/protein_fragment.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,703   copying build/lib/topiary/evidence.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,707   copying build/lib/topiary/io_pvacseq.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,711   copying build/lib/topiary/filters.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,714   copying build/lib/topiary/self_proteome.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,718   copying build/lib/topiary/sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,720   copying build/lib/topiary/result.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,724   copying build/lib/topiary/io_lens.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,727   copying build/lib/topiary/io.py -> build/bdist.linux-armv7l/wheel/./topiary
2026-09-06T15:32:58,733   creating build/bdist.linux-armv7l/wheel/tests
2026-09-06T15:32:58,734   copying build/lib/tests/test_fragment_paths.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,737   copying build/lib/tests/test_twin_conformance.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,740   copying build/lib/tests/test_consumer_workflows.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,743   copying build/lib/tests/optional_dependencies.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,745   copying build/lib/tests/test_empty_and_collision_guards.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,748   copying build/lib/tests/test_predict_from_variants_refactor.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,751   copying build/lib/tests/test_cli_cached_predictor.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,754   copying build/lib/tests/test_coverage_gaps.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,758   copying build/lib/tests/test_sources.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,761   copying build/lib/tests/test_predictor_internals.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,764   copying build/lib/tests/test_predict_from_fragments.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,768   copying build/lib/tests/test_per_peptide_alleles.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,771   copying build/lib/tests/common.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,773   copying build/lib/tests/test_prediction_columns.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,776   copying build/lib/tests/test_args_outputs.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,778   copying build/lib/tests/test_epitopes_from_commandline_args.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,780   copying build/lib/tests/test_deploy_script.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,782   copying build/lib/tests/test_variant_expression_filters.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,784   copying build/lib/tests/test_result.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,787   copying build/lib/tests/test_lens_binding_override.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,789   copying build/lib/tests/test_cli_ranking.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,791   copying build/lib/tests/test_peptide_property_node.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,794   copying build/lib/tests/test_protein_fragment.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,796   copying build/lib/tests/test_pirlygenes_test_selection.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,798   copying build/lib/tests/test_validation_and_edge_cases.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,801   copying build/lib/tests/test_named_allele_projection.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,803   copying build/lib/tests/test_amino_acids.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,805   copying build/lib/tests/test_io_pvacseq.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,809   copying build/lib/tests/test_load_stringtie_gtf_fpkm.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,812   copying build/lib/tests/test_cross_sample_evidence.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,814   copying build/lib/tests/test_allele_set.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,816   copying build/lib/tests/test_isovar_run.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,819   copying build/lib/tests/test_cli_script.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,820   copying build/lib/tests/test_gate_scripts.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,822   copying build/lib/tests/test_load_cufflinks_fpkm.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,824   copying build/lib/tests/test_shared_context.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,827   copying build/lib/tests/test_mutant_epitope_predictions_class2.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,829   copying build/lib/tests/test_cli_protein_changes.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,830   copying build/lib/tests/test_expression_integration.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,833   copying build/lib/tests/test_rna_evidence_units.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,835   copying build/lib/tests/test_sort_ordering.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,837   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,839   copying build/lib/tests/test_kind_mhc_dependence.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,842   copying build/lib/tests/test_inputs.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,844   copying build/lib/tests/test_expression_loader.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,846   copying build/lib/tests/test_frameshift_fragments.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,849   copying build/lib/tests/test_end_to_end.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,851   copying build/lib/tests/test_public_helpers.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,854   copying build/lib/tests/test_cached_predictor.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,856   copying build/lib/tests/test_integration.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,858   copying build/lib/tests/test_dsl_extensions.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,861   copying build/lib/tests/test_symmetric_evidence.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,863   copying build/lib/tests/test_context_forwarding.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,865   copying build/lib/tests/test_edge_case_fixtures.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,868   copying build/lib/tests/test_dataframe.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,869   copying build/lib/tests/test_dsl_polish.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,872   copying build/lib/tests/test_lens_versions.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,874   copying build/lib/tests/test_cache_allele_nulls.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,876   copying build/lib/tests/test_fragment_evidence.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,878   copying build/lib/tests/test_combine_predictor_results.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,881   copying build/lib/tests/test_default_versions.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,883   copying build/lib/tests/test_absent_vs_empty_audit.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,885   copying build/lib/tests/test_rna_helpers.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,887   copying build/lib/tests/test_dsl_roundtrip.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,890   copying build/lib/tests/test_wide.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,893   copying build/lib/tests/test_ranking.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,896   copying build/lib/tests/test_sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,899   copying build/lib/tests/data.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,900   copying build/lib/tests/test_cli_coverage.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,902   copying build/lib/tests/test_allele_free_kinds.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,905   copying build/lib/tests/test_self_proteome.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,907   copying build/lib/tests/test_from_predictions.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,910   copying build/lib/tests/test_peptide_view.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,912   copying build/lib/tests/test_allele_class.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,914   copying build/lib/tests/test_effect_expression_filters.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,916   copying build/lib/tests/test_shared_expression_vocabulary.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,918   copying build/lib/tests/test_best_allele.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,921   copying build/lib/tests/test_sources_optional.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,922   copying build/lib/tests/test_io.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,925   copying build/lib/tests/test_direct_input_regressions.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,927   creating build/bdist.linux-armv7l/wheel/tests/data
2026-09-06T15:32:58,928   copying build/lib/tests/data/BLOSUM62.ncbi -> build/bdist.linux-armv7l/wheel/./tests/data
2026-09-06T15:32:58,930   copying build/lib/tests/test_cache_key_allele_set.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,932   copying build/lib/tests/test_scoped_filters.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,934   copying build/lib/tests/test_peptide_mutation_interval.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,936   copying build/lib/tests/test_padding.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,938   copying build/lib/tests/test_io_lens.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,941   copying build/lib/tests/test_kind_support.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,943   copying build/lib/tests/test_canonical_methods.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,945   copying build/lib/tests/test_lazy_imports.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,947   copying build/lib/tests/test_group_keys.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,949   copying build/lib/tests/test_self_nearest_population.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,951   copying build/lib/tests/test_contains_mutant_residues.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,953   copying build/lib/tests/test_lens_multi_version.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,956   copying build/lib/tests/test_evidence.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,958   copying build/lib/tests/test_mutant_epitope_predictions_class1.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,960   copying build/lib/tests/conftest.py -> build/bdist.linux-armv7l/wheel/./tests
2026-09-06T15:32:58,962   running install_egg_info
2026-09-06T15:32:58,967   Copying topiary.egg-info to build/bdist.linux-armv7l/wheel/./topiary-5.52.7-py3.11.egg-info
2026-09-06T15:32:58,979   running install_scripts
2026-09-06T15:32:58,992   creating build/bdist.linux-armv7l/wheel/topiary-5.52.7.dist-info/WHEEL
2026-09-06T15:32:58,995   creating '/tmp/pip-wheel-5xb8xhm7/.tmp-vbgswbj9/topiary-5.52.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-09-06T15:32:59,000   adding 'docs/api.md'
2026-09-06T15:32:59,002   adding 'docs/cached.md'
2026-09-06T15:32:59,005   adding 'docs/consumer-guide.md'
2026-09-06T15:32:59,010   adding 'docs/expression-semantics.md'
2026-09-06T15:32:59,013   adding 'docs/fragments.md'
2026-09-06T15:32:59,015   adding 'docs/index.md'
2026-09-06T15:32:59,016   adding 'docs/properties.md'
2026-09-06T15:32:59,019   adding 'docs/pvacseq.md'
2026-09-06T15:32:59,021   adding 'docs/quickstart.md'
2026-09-06T15:32:59,027   adding 'docs/ranking.md'
2026-09-06T15:32:59,029   adding 'docs/self_proteome.md'
2026-09-06T15:32:59,032   adding 'tests/__init__.py'
2026-09-06T15:32:59,033   adding 'tests/common.py'
2026-09-06T15:32:59,034   adding 'tests/conftest.py'
2026-09-06T15:32:59,035   adding 'tests/data.py'
2026-09-06T15:32:59,037   adding 'tests/optional_dependencies.py'
2026-09-06T15:32:59,038   adding 'tests/test_absent_vs_empty_audit.py'
2026-09-06T15:32:59,040   adding 'tests/test_allele_class.py'
2026-09-06T15:32:59,041   adding 'tests/test_allele_free_kinds.py'
2026-09-06T15:32:59,043   adding 'tests/test_allele_set.py'
2026-09-06T15:32:59,045   adding 'tests/test_amino_acids.py'
2026-09-06T15:32:59,046   adding 'tests/test_args_outputs.py'
2026-09-06T15:32:59,048   adding 'tests/test_best_allele.py'
2026-09-06T15:32:59,050   adding 'tests/test_cache_allele_nulls.py'
2026-09-06T15:32:59,051   adding 'tests/test_cache_key_allele_set.py'
2026-09-06T15:32:59,056   adding 'tests/test_cached_predictor.py'
2026-09-06T15:32:59,058   adding 'tests/test_canonical_methods.py'
2026-09-06T15:32:59,060   adding 'tests/test_cli_cached_predictor.py'
2026-09-06T15:32:59,061   adding 'tests/test_cli_coverage.py'
2026-09-06T15:32:59,063   adding 'tests/test_cli_protein_changes.py'
2026-09-06T15:32:59,064   adding 'tests/test_cli_ranking.py'
2026-09-06T15:32:59,066   adding 'tests/test_cli_script.py'
2026-09-06T15:32:59,069   adding 'tests/test_combine_predictor_results.py'
2026-09-06T15:32:59,071   adding 'tests/test_consumer_workflows.py'
2026-09-06T15:32:59,072   adding 'tests/test_contains_mutant_residues.py'
2026-09-06T15:32:59,074   adding 'tests/test_context_forwarding.py'
2026-09-06T15:32:59,076   adding 'tests/test_coverage_gaps.py'
2026-09-06T15:32:59,078   adding 'tests/test_cross_sample_evidence.py'
2026-09-06T15:32:59,079   adding 'tests/test_dataframe.py'
2026-09-06T15:32:59,081   adding 'tests/test_default_versions.py'
2026-09-06T15:32:59,082   adding 'tests/test_deploy_script.py'
2026-09-06T15:32:59,084   adding 'tests/test_direct_input_regressions.py'
2026-09-06T15:32:59,087   adding 'tests/test_dsl_extensions.py'
2026-09-06T15:32:59,089   adding 'tests/test_dsl_polish.py'
2026-09-06T15:32:59,091   adding 'tests/test_dsl_roundtrip.py'
2026-09-06T15:32:59,093   adding 'tests/test_edge_case_fixtures.py'
2026-09-06T15:32:59,094   adding 'tests/test_effect_expression_filters.py'
2026-09-06T15:32:59,096   adding 'tests/test_empty_and_collision_guards.py'
2026-09-06T15:32:59,097   adding 'tests/test_end_to_end.py'
2026-09-06T15:32:59,099   adding 'tests/test_epitopes_from_commandline_args.py'
2026-09-06T15:32:59,101   adding 'tests/test_evidence.py'
2026-09-06T15:32:59,102   adding 'tests/test_expression_integration.py'
2026-09-06T15:32:59,104   adding 'tests/test_expression_loader.py'
2026-09-06T15:32:59,105   adding 'tests/test_fragment_evidence.py'
2026-09-06T15:32:59,107   adding 'tests/test_fragment_paths.py'
2026-09-06T15:32:59,110   adding 'tests/test_frameshift_fragments.py'
2026-09-06T15:32:59,112   adding 'tests/test_from_predictions.py'
2026-09-06T15:32:59,114   adding 'tests/test_gate_scripts.py'
2026-09-06T15:32:59,116   adding 'tests/test_group_keys.py'
2026-09-06T15:32:59,118   adding 'tests/test_inputs.py'
2026-09-06T15:32:59,119   adding 'tests/test_integration.py'
2026-09-06T15:32:59,121   adding 'tests/test_io.py'
2026-09-06T15:32:59,124   adding 'tests/test_io_lens.py'
2026-09-06T15:32:59,127   adding 'tests/test_io_pvacseq.py'
2026-09-06T15:32:59,129   adding 'tests/test_isovar_run.py'
2026-09-06T15:32:59,131   adding 'tests/test_kind_mhc_dependence.py'
2026-09-06T15:32:59,133   adding 'tests/test_kind_support.py'
2026-09-06T15:32:59,134   adding 'tests/test_lazy_imports.py'
2026-09-06T15:32:59,136   adding 'tests/test_lens_binding_override.py'
2026-09-06T15:32:59,138   adding 'tests/test_lens_multi_version.py'
2026-09-06T15:32:59,140   adding 'tests/test_lens_versions.py'
2026-09-06T15:32:59,141   adding 'tests/test_load_cufflinks_fpkm.py'
2026-09-06T15:32:59,142   adding 'tests/test_load_stringtie_gtf_fpkm.py'
2026-09-06T15:32:59,143   adding 'tests/test_mutant_epitope_predictions_class1.py'
2026-09-06T15:32:59,144   adding 'tests/test_mutant_epitope_predictions_class2.py'
2026-09-06T15:32:59,146   adding 'tests/test_named_allele_projection.py'
2026-09-06T15:32:59,147   adding 'tests/test_padding.py'
2026-09-06T15:32:59,148   adding 'tests/test_peptide_mutation_interval.py'
2026-09-06T15:32:59,150   adding 'tests/test_peptide_property_node.py'
2026-09-06T15:32:59,153   adding 'tests/test_peptide_view.py'
2026-09-06T15:32:59,155   adding 'tests/test_per_peptide_alleles.py'
2026-09-06T15:32:59,156   adding 'tests/test_pirlygenes_test_selection.py'
2026-09-06T15:32:59,159   adding 'tests/test_predict_from_fragments.py'
2026-09-06T15:32:59,161   adding 'tests/test_predict_from_variants_refactor.py'
2026-09-06T15:32:59,163   adding 'tests/test_prediction_columns.py'
2026-09-06T15:32:59,165   adding 'tests/test_predictor_internals.py'
2026-09-06T15:32:59,167   adding 'tests/test_protein_fragment.py'
2026-09-06T15:32:59,169   adding 'tests/test_public_helpers.py'
2026-09-06T15:32:59,178   adding 'tests/test_ranking.py'
2026-09-06T15:32:59,181   adding 'tests/test_result.py'
2026-09-06T15:32:59,183   adding 'tests/test_rna_evidence_units.py'
2026-09-06T15:32:59,185   adding 'tests/test_rna_helpers.py'
2026-09-06T15:32:59,186   adding 'tests/test_scoped_filters.py'
2026-09-06T15:32:59,187   adding 'tests/test_self_nearest_population.py'
2026-09-06T15:32:59,190   adding 'tests/test_self_proteome.py'
2026-09-06T15:32:59,192   adding 'tests/test_sequence_helpers.py'
2026-09-06T15:32:59,193   adding 'tests/test_shared_context.py'
2026-09-06T15:32:59,195   adding 'tests/test_shared_expression_vocabulary.py'
2026-09-06T15:32:59,197   adding 'tests/test_sort_ordering.py'
2026-09-06T15:32:59,198   adding 'tests/test_sources.py'
2026-09-06T15:32:59,199   adding 'tests/test_sources_optional.py'
2026-09-06T15:32:59,202   adding 'tests/test_symmetric_evidence.py'
2026-09-06T15:32:59,204   adding 'tests/test_twin_conformance.py'
2026-09-06T15:32:59,206   adding 'tests/test_validation_and_edge_cases.py'
2026-09-06T15:32:59,208   adding 'tests/test_variant_expression_filters.py'
2026-09-06T15:32:59,210   adding 'tests/test_wide.py'
2026-09-06T15:32:59,212   adding 'tests/data/BLOSUM62.ncbi'
2026-09-06T15:32:59,214   adding 'topiary/__init__.py'
2026-09-06T15:32:59,216   adding 'topiary/amino_acids.py'
2026-09-06T15:32:59,224   adding 'topiary/cached.py'
2026-09-06T15:32:59,231   adding 'topiary/evidence.py'
2026-09-06T15:32:59,233   adding 'topiary/filters.py'
2026-09-06T15:32:59,235   adding 'topiary/inputs.py'
2026-09-06T15:32:59,237   adding 'topiary/io.py'
2026-09-06T15:32:59,239   adding 'topiary/io_isovar.py'
2026-09-06T15:32:59,244   adding 'topiary/io_lens.py'
2026-09-06T15:32:59,245   adding 'topiary/io_protein_fragment.py'
2026-09-06T15:32:59,251   adding 'topiary/io_pvacseq.py'
2026-09-06T15:32:59,252   adding 'topiary/optional_dependencies.py'
2026-09-06T15:32:59,254   adding 'topiary/prediction_columns.py'
2026-09-06T15:32:59,263   adding 'topiary/predictor.py'
2026-09-06T15:32:59,266   adding 'topiary/properties.py'
2026-09-06T15:32:59,271   adding 'topiary/protein_fragment.py'
2026-09-06T15:32:59,275   adding 'topiary/result.py'
2026-09-06T15:32:59,279   adding 'topiary/self_proteome.py'
2026-09-06T15:32:59,281   adding 'topiary/sequence_helpers.py'
2026-09-06T15:32:59,282   adding 'topiary/sources.py'
2026-09-06T15:32:59,285   adding 'topiary/wide.py'
2026-09-06T15:32:59,287   adding 'topiary/cli/__init__.py'
2026-09-06T15:32:59,290   adding 'topiary/cli/args.py'
2026-09-06T15:32:59,292   adding 'topiary/cli/cached_predictor.py'
2026-09-06T15:32:59,293   adding 'topiary/cli/errors.py'
2026-09-06T15:32:59,295   adding 'topiary/cli/filtering.py'
2026-09-06T15:32:59,296   adding 'topiary/cli/outputs.py'
2026-09-06T15:32:59,297   adding 'topiary/cli/protein_changes.py'
2026-09-06T15:32:59,299   adding 'topiary/cli/rna.py'
2026-09-06T15:32:59,301   adding 'topiary/cli/script.py'
2026-09-06T15:32:59,302   adding 'topiary/cli/sequence.py'
2026-09-06T15:32:59,304   adding 'topiary/ranking/__init__.py'
2026-09-06T15:32:59,307   adding 'topiary/ranking/apply.py'
2026-09-06T15:32:59,327   adding 'topiary/ranking/nodes.py'
2026-09-06T15:32:59,331   adding 'topiary/ranking/parser.py'
2026-09-06T15:32:59,332   adding 'topiary/rna/__init__.py'
2026-09-06T15:32:59,334   adding 'topiary/rna/common.py'
2026-09-06T15:32:59,335   adding 'topiary/rna/cufflinks.py'
2026-09-06T15:32:59,337   adding 'topiary/rna/expression_loader.py'
2026-09-06T15:32:59,338   adding 'topiary/rna/gtf.py'
2026-09-06T15:32:59,342   adding 'topiary-5.52.7.dist-info/licenses/LICENSE'
2026-09-06T15:32:59,345   adding 'topiary-5.52.7.dist-info/METADATA'
2026-09-06T15:32:59,346   adding 'topiary-5.52.7.dist-info/WHEEL'
2026-09-06T15:32:59,347   adding 'topiary-5.52.7.dist-info/entry_points.txt'
2026-09-06T15:32:59,348   adding 'topiary-5.52.7.dist-info/top_level.txt'
2026-09-06T15:32:59,350   adding 'topiary-5.52.7.dist-info/RECORD'
2026-09-06T15:32:59,359   removing build/bdist.linux-armv7l/wheel
2026-09-06T15:32:59,491   Building wheel for topiary (pyproject.toml): finished with status 'done'
2026-09-06T15:32:59,507   Created wheel for topiary: filename=topiary-5.52.7-py3-none-any.whl size=568762 sha256=462b3cb90eb850d95744d556365d2e018ea90aac6be1448417b01a9aaea2d2fe
2026-09-06T15:32:59,508   Stored in directory: /tmp/pip-ephem-wheel-cache-26b04l5d/wheels/b2/69/82/3661a66040040213b283449be8487bb0215be451064fa0ede7
2026-09-06T15:32:59,527 Successfully built topiary
2026-09-06T15:32:59,544 Removed build tracker: '/tmp/pip-build-tracker-8au6a9yj'