2026-09-07T10:34:35,101 Created temporary directory: /tmp/pip-ephem-wheel-cache-mvwg3btv 2026-09-07T10:34:35,103 Created temporary directory: /tmp/pip-build-tracker-bv2dslqz 2026-09-07T10:34:35,104 Initialized build tracking at /tmp/pip-build-tracker-bv2dslqz 2026-09-07T10:34:35,104 Created build tracker: /tmp/pip-build-tracker-bv2dslqz 2026-09-07T10:34:35,105 Entered build tracker: /tmp/pip-build-tracker-bv2dslqz 2026-09-07T10:34:35,105 Created temporary directory: /tmp/pip-wheel-x_p3i44e 2026-09-07T10:34:35,108 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-07T10:34:35,111 Created temporary directory: /tmp/pip-ephem-wheel-cache-vta4eo22 2026-09-07T10:34:35,133 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-07T10:34:35,136 2 location(s) to search for versions of pysam: 2026-09-07T10:34:35,136 * https://pypi.org/simple/pysam/ 2026-09-07T10:34:35,136 * https://www.piwheels.org/simple/pysam/ 2026-09-07T10:34:35,137 Fetching project page and analyzing links: https://pypi.org/simple/pysam/ 2026-09-07T10:34:35,138 Getting page https://pypi.org/simple/pysam/ 2026-09-07T10:34:35,139 Found index url https://pypi.org/simple 2026-09-07T10:34:35,359 Fetched page https://pypi.org/simple/pysam/ as application/vnd.pypi.simple.v1+json 2026-09-07T10:34:35,453 Found link https://files.pythonhosted.org/packages/7f/ce/e9405fcf72096f78dc7d75e8ce2a1cd907e1b4a9af0dbf1fc4dac5770f81/pysam-0.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4 2026-09-07T10:34:35,454 Found link https://files.pythonhosted.org/packages/df/58/508dc40f603551d34b815560d52d9532dd243f1a8c35d9317ebff15d27e7/pysam-0.4.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.4.1 2026-09-07T10:34:35,455 Found link https://files.pythonhosted.org/packages/64/7b/09ff2b61c7600a5aefd7ee0c37cec60140d31f8194d237e1d63c4d457931/pysam-0.7.6.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.6 2026-09-07T10:34:35,456 Found link https://files.pythonhosted.org/packages/46/b5/877f40fbb84f588b69b4afcb1409b8bdeed7ef980113d3e8ef69bab26e09/pysam-0.7.7.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.7 2026-09-07T10:34:35,456 Found link https://files.pythonhosted.org/packages/b5/0f/436d15f08096dd9869a956e502fd119c15efbd84896aa53df50c7c6c0e13/pysam-0.7.8.tar.gz (from https://pypi.org/simple/pysam/), version: 0.7.8 2026-09-07T10:34:35,457 Found link https://files.pythonhosted.org/packages/a4/ea/901d47d5621f15c05079dcf45e746a77bab21dbf0f9ce272993a3ca3a367/pysam-0.8.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.0 2026-09-07T10:34:35,458 Found link https://files.pythonhosted.org/packages/0e/4a/d1625792b2fd3a172d4bad096ab1559bcb7a81fa5fa6f9bc3937de23340d/pysam-0.8.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.1 2026-09-07T10:34:35,459 Found link https://files.pythonhosted.org/packages/10/42/7f51e1ad0c283e1d6bf826d3a193fa0644e675c9c6d42263b69fefc3b527/pysam-0.8.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2 2026-09-07T10:34:35,460 Found link https://files.pythonhosted.org/packages/07/6b/3f48a2f05fbde46f2c52fc5f9adc15d928951cd54035109d553e14b774c7/pysam-0.8.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.2.1 2026-09-07T10:34:35,461 Found link https://files.pythonhosted.org/packages/f9/b9/8cfad46376335001f0cbbc46bf402fa107b0e8af8fe9e4192702b251f628/pysam-0.8.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.3 2026-09-07T10:34:35,461 Found link https://files.pythonhosted.org/packages/27/89/bf8c44d0bfe9d0cadab062893806994c168c9f490f67370fc56d6e8ba224/pysam-0.8.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.8.4 2026-09-07T10:34:35,462 Found link https://files.pythonhosted.org/packages/0f/37/fa514cb2163997551e95f63ec12f7bec7b640a601456f1d0ab3ab900c05f/pysam-0.9.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.0 2026-09-07T10:34:35,463 Found link https://files.pythonhosted.org/packages/40/15/20b22dc3d017ec123e533d062b982b111b0214168905de3221b5caf5f766/pysam-0.9.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1 2026-09-07T10:34:35,464 Found link https://files.pythonhosted.org/packages/f7/ae/59341d9fd2bed1cc32225115fc3f866a0e4e020f31073d698785c956360f/pysam-0.9.1.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.1 2026-09-07T10:34:35,465 Found link https://files.pythonhosted.org/packages/76/62/908776209238850eca22e7139cc23ce2ba14b2941ceb438b1572f84e8d82/pysam-0.9.1.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.2 2026-09-07T10:34:35,465 Found link https://files.pythonhosted.org/packages/e7/e9/db49c8bd39673c1f48200f69ccc34784016d664136f36e03a090411a95fc/pysam-0.9.1.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.3 2026-09-07T10:34:35,466 Found link https://files.pythonhosted.org/packages/de/03/02934438b204565bc5231f38a11da840a3c3e4b2beac8c8770d675770668/pysam-0.9.1.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.9.1.4 2026-09-07T10:34:35,467 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/5a/0b25d6d734e1797c7ce06442ff6714af53cb1c8cd6c6cfd1a32df4587e33/pysam-0.10.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,467 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/72/d2/d106b2fc317e838f7eea7140c8d0ad4df4fde6a456a526649a58397f638c/pysam-0.10.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,468 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0c/55/d775726477bfe55e06c88701c8cf9a4b2596a877b09e562551c00cf4a931/pysam-0.10.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,468 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/ea/01735cceef15296bad16873979ae6848efebbbc9ab20eba244d532846dbf/pysam-0.10.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,469 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/09/526378006226fb39eb54d9935c407c9b3c0302792c89e50d6b4f14d6f4b8/pysam-0.10.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,470 Found link https://files.pythonhosted.org/packages/87/8e/d2d8238558970df37c7aa01ddec63057a98042334e939b4c1c69cb9a2504/pysam-0.10.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.10.0 2026-09-07T10:34:35,470 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/93/f5/bfca0394bb90cc5993b7595d7c6aeebfc43dce8bf97394df4bfba9141caf/pysam-0.11-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,471 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/ff/7e0c6169883a26cee912ce25ef98893c13966cce1064fd6136b53e28d365/pysam-0.11-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,472 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/ba/91614d3e18818011decdb5cda8991cea11330d274399492822fb50b7478e/pysam-0.11-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,472 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3e/6f/2b166df4d7d55e2f69551b85ec2bba01048e5dc2307163ab8ad7d694bde1/pysam-0.11-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,473 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0b/28/cd6fde9c19444f779130e27195b4c1d9d896266e4e0b0bc8d515c031854f/pysam-0.11-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,474 Found link https://files.pythonhosted.org/packages/f4/bb/c5fcaace8857bdf8a430de41b5298c602fdce4917494f7a941c038e5861a/pysam-0.11.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11 2026-09-07T10:34:35,474 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/81/01/2304e5367c566f538cf64bad1bd41ec41e47d8aeefd197a209c8c1cf14fa/pysam-0.11.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,475 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/b3/b7ea200fc6e16af0cd2397659a2a2dd383f4ea71d2e0948f7215e73fb6a6/pysam-0.11.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,475 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/00/0d55946c0b1c781caee096ef9c4e9e54047ecf897874bf791c5ea8351df3/pysam-0.11.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,476 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/2a/b5e9e88b0d5097fa45f0832a05acfb39879679a087e55145198d47bb6099/pysam-0.11.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,476 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6e/0e/967ed910f8ce74ed5ea6b7a4775a86d05205963bf927a8452604ad277913/pysam-0.11.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,477 Found link https://files.pythonhosted.org/packages/be/70/16cdd6c5ef799b2db2af4fd5f9720df0f3206b0a06ed40e03692aa80ae25/pysam-0.11.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.1 2026-09-07T10:34:35,478 Found link https://files.pythonhosted.org/packages/89/d9/52995323a3a15e14f2cd579a49f953c804b36a1a7d7dc09a08b7de3591d2/pysam-0.11.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2 2026-09-07T10:34:35,478 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/23/12b4829036ce49ec068c61a28057029dd19a6a1a29855dff0efb785e0d12/pysam-0.11.2.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,479 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0a/d8/daa0986a5049b66b4ab2fc8093a17a961cedc75d1a39e1a4821d19f4f13f/pysam-0.11.2.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,480 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/5f/254cec485fedd72269c061262eb2bc36f8a438a5badb78c8582e46905623/pysam-0.11.2.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,480 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/cc/47ae71c341bd822dfeec2148f6521c1bba690e4581814114519b3cc611d4/pysam-0.11.2.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,481 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c7/b0/4acf13c3b125db232e8ed93fec3e5b3a90abe47fd27aaacc15c9e03caf6f/pysam-0.11.2.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,481 Found link https://files.pythonhosted.org/packages/4b/d2/152284e08c551471c7a7b9b23b4d0916637705ee4f979314ca1750b37c83/pysam-0.11.2.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.1 2026-09-07T10:34:35,482 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/dd/2a9226b90d8c98482209617c2376434e1c19da4981de49c78af0e763988f/pysam-0.11.2.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,483 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/9d/d30859cf5a7555719e9b28d34f61bbd4ef0e811fb8a857a986ee9913b79a/pysam-0.11.2.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,483 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/34/b0a7ece94bf7af7d482282ccd8430fe291147960d900b514b7aa606c9170/pysam-0.11.2.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,485 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9d/a0/2bc18552108cf9605e0ffa7c31673bc56653c0cd7521730a2d5eeb06939f/pysam-0.11.2.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,485 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/c0/18436ad1db0ed38c997b7fda42db8b6489c50abcb321320015de12bdd164/pysam-0.11.2.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,486 Found link https://files.pythonhosted.org/packages/a4/1b/b6dfd92aea876647d20d9a8bd8618e4f2af6300539426be83c8bb0912d6f/pysam-0.11.2.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.11.2.2 2026-09-07T10:34:35,486 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/be/3c/9c0d31f4baa506057e781641325f52f709ca4fe777065e39be08e690752b/pysam-0.12-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,487 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/5e/f1/28f7e3df4941ac01c2c1794b1009000fad81cf026da6c04e223e5e86e6ad/pysam-0.12-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,487 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e7/a7/9225250a464b91caba6c88e82b59755e07a30aa803085febbb923655d2d5/pysam-0.12-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,488 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c6/ce/08728c6f395b46cdb75b79d4c554184b624fbe344a6a99b62b1a7f58a5df/pysam-0.12-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,488 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ef/bd/a741af36309bfbd8d40e5c5c9fc9f2ca3c7a86c2d1ff7c2563a81d851a44/pysam-0.12-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,489 Found link https://files.pythonhosted.org/packages/0f/e0/19046ae89307ddeadfa8dabc305a9cfce67865de06b762057edd84bc0fd6/pysam-0.12.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12 2026-09-07T10:34:35,490 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/bc/9d27138acddecbeca3a010691e71e89ad02e5c6dc3a38ca9d8cc94c92295/pysam-0.12.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,490 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/29/d9/7a508464feb23b750ba0d56e10e014f0d1a8cd6a4e8fe3887c75affa5fa9/pysam-0.12.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,491 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/d5/4b67f2767fc352d8246c3eed4ce0f5d61fdbf6cef6e5b57d433ed63f7ed8/pysam-0.12.0.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,492 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/d9/91db21a596a3a896365a90c5b44c6722b4e0acfd5e90c52071175e77aad4/pysam-0.12.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,492 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/50/28/f3a3989a9a34fa6c84fdba3d80b4b1624b2c253d7906a13638152b20555b/pysam-0.12.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,493 Found link https://files.pythonhosted.org/packages/b9/98/d98b250f98a6b91df71a03083219bec786cdda5408f77997f8ad81d06058/pysam-0.12.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.12.0.1 2026-09-07T10:34:35,494 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/cd/676a08a4bd77fd21716add76f946235780a5673c75c7408b2449db2dde5a/pysam-0.13-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,495 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/59/7e/55048651e80ca7ebbed41489ec53da863a500d536fbff5884175e81b40c1/pysam-0.13-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,495 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fc/63/4a758298dafa37a719540fd55c4e76de15e3ad6be0201c9e0e6ed59b3d8c/pysam-0.13-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,495 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8b/08/8f6ea307458945f9e5db70e460b7902f210f08646af35800372907095f06/pysam-0.13-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,496 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/dd/5f41722f95749537e2f5a84414a4b08fc4e14d39552df8171e375129edf5/pysam-0.13-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,497 Found link https://files.pythonhosted.org/packages/31/17/31d317006a74941d2caddac97c5106601fe4da467653d0f061702e9ead95/pysam-0.13.tar.gz (from https://pypi.org/simple/pysam/), version: 0.13 2026-09-07T10:34:35,497 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c9/0b/ca7620a778a1ac5a6669b750ab82cd8e2ca29f671cf2ab929cf907338bf5/pysam-0.14-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,498 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/ff/a7cdcde7f79ca59cd6a6921f55f0cce8fb3d4ff273257e313efc3e52853a/pysam-0.14-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,498 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/51/c1/474c632acbbd7c06921a4ad31b237c3f41fe662101ec775be6a9c3c8cf20/pysam-0.14-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,499 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/53/6e677a66b02755d9d631a7ffa37b23b8eca7b2463faf14dcf3bcbbcbec24/pysam-0.14-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,500 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/96/7b/845e49997825cf2aaef3719853e8d2d07b43d3a5e096cb9863208b7d0af8/pysam-0.14-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,500 Found link https://files.pythonhosted.org/packages/d8/78/8b3fad13d3bd8787c0d922056061727c2a0cf91c45a836c98342594dd293/pysam-0.14.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14 2026-09-07T10:34:35,501 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/cd/9b/2627df910452b49bef57dd5ce720832d49faadea3e3d86f940f168b807b4/pysam-0.14.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,502 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/96/a9b21863c30c00bde76ab9bd3b538ed9f4d872f6767217c930cd0246fd21/pysam-0.14.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,502 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a0/ba/95ee9ea7921ae153c51880ffe047269a7ccf396442214f4fc965cc66ea68/pysam-0.14.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,503 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/a9/d74aa164efb28ce328cd4890b0182ccdf2e781c192910072717c965765c6/pysam-0.14.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,503 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/97/bb/65b3a258ffca71251ae1d07c1d3eb54448da31ee74106e49e2f251f066d4/pysam-0.14.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,504 Found link https://files.pythonhosted.org/packages/fc/9b/4bb8d016406dcff47e2866e14d3dcb10741ec3920649e8c521996830944f/pysam-0.14.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.14.1 2026-09-07T10:34:35,505 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2f/d8/57e6c36c4069e3b240115b3cb98bf1d5a2989d76815aff14fb0149d27781/pysam-0.15.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,505 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dc/af/c14708a4d43effb82bd14302e41e9fa818b724ada9b9d89283319a22a585/pysam-0.15.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,506 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/15/77/2e258a5ff090226516c4338d682c6f8ed13e5be2ac7a67e6b452b04b0237/pysam-0.15.0-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,506 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/5d/d96d3662647a3cf33b1e3fe6d21eaecd00f47d39edbe4cd85486639cb603/pysam-0.15.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,507 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/da/6a0cc06c65acaea0b8830e632712d53fa8bc88ea19096038b3bef22b25da/pysam-0.15.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,507 Found link https://files.pythonhosted.org/packages/f9/c4/f1b6963a05f415aa69c8efd64ebe460d56d03ecc75db70b0e8606b589ade/pysam-0.15.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.0 2026-09-07T10:34:35,508 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b4/d8/9afa92bd4b48ebd6896d22bb7cdaeb5aa4577983333df5e99160c62fb6ff/pysam-0.15.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,509 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/66/6b/f1a4f142d884b6e1cda6542bf4b89ce88ad8465197511d83994f2cf6484d/pysam-0.15.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,509 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/5f/030c774b44932d2e23d773558679d553fb31dd5ecdb094b8e26b316de784/pysam-0.15.1-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,510 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/37/27/7d7ce83c0acac59b95849f2fb678484147f1e1393162ee0975cb7f84e53c/pysam-0.15.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,511 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6f/f4/e12faf1618e977a868fe66d40288fc3dd989a10cc4c77603da33a7634a18/pysam-0.15.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,511 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1e/04/3e22a04ade5291e968b3f3e9195929574221d86fd8982a4976a40b045060/pysam-0.15.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,512 Found link https://files.pythonhosted.org/packages/73/59/c319f1bde3019bbce4583cecb12b9e3e52ffcfbe2c96d8b1fb131c0d4fb7/pysam-0.15.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.1 2026-09-07T10:34:35,513 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/7d/68b6555c7bb414b655495305d2add784c251fc83d4e698878e6d1d35fc9a/pysam-0.15.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,513 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0f/bd/f5ab828a9ff45a6ca14d5ea2a3580f720134052db258cd7ef929a4ed1d7a/pysam-0.15.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,514 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4b/04/d5a6386b6d124bcdf27d81ab952e5d24e37ff98b97f992aa5b83c647e9c9/pysam-0.15.2-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,515 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/aa/e6/0b18d30c30e3690c5774446c1d7246c5e37c4710e38d93a20bb56cad4bc0/pysam-0.15.2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,515 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/fc/d2be1a093bd8494ab63e3168aca36c2494753bbff190f3201ce2e7da9cda/pysam-0.15.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,516 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/1a/4fd27da2d19f7d914f757097605709a6509776b4cb63f42bca63f3531058/pysam-0.15.2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,516 Found link https://files.pythonhosted.org/packages/15/f6/ce0611aaa1865a616f7dc164fbf046eaf38f2b17c6d404403c56250beb93/pysam-0.15.2.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.2 2026-09-07T10:34:35,517 Found link https://files.pythonhosted.org/packages/15/e7/2dab8bb0ac739555e69586f1492f0ff6bc4a1f8312992a83001d3deb77ac/pysam-0.15.3.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.3 2026-09-07T10:34:35,517 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/bc/99/5b711afad53f7ebdafc182bae1642fd764e569a8c0de9408ea6138c668b0/pysam-0.15.4-cp27-cp27m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,518 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/28/60742ebf8afa6efdf7d2cc3552cbef24da33bf0f76b26b5afef2406683fd/pysam-0.15.4-cp27-cp27m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,519 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f2/c1/8f1562c2b89bc5606a3e8c57add0078af4cee3050507eac4b67b37309b16/pysam-0.15.4-cp27-cp27m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,519 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0e/f3/2b9802c61089f6c94c73f902f17046c416793da9242dfe73462e79ec4635/pysam-0.15.4-cp27-cp27mu-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,520 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/68/7b/a54f66a8b126c0d6eefa3f71ebdd46bf967c0452759b553432e845e927f3/pysam-0.15.4-cp27-cp27mu-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,521 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/c6/a337077e2cbae228a7f1b0ee1d97b240609c9377b6d46df9dc0a477eff73/pysam-0.15.4-cp35-cp35m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,522 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/55/9c/b064140318b64910f0a7938b385f10b88428aaa50f720038b2927a7db908/pysam-0.15.4-cp35-cp35m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,522 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/b4/075c25bf8e1aaa11d178fdfe267d73f1ea14f9e90ecb0fe58cb98911bdc5/pysam-0.15.4-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,523 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/78/df321a985e93be0d2dbf2249e9d79a33131381e8d9ef5c965db643183561/pysam-0.15.4-cp36-cp36m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,524 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/cc/a9546377a762a84bd17ca313f182e8eba833e579a568c3d62571edd8c2f7/pysam-0.15.4-cp36-cp36m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,525 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2b/01/2be4def91aeb50ccb963879b8193ca667087308696f2fe6aa86c6da9db72/pysam-0.15.4-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,525 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c1/b9/4a37921da49d89c855b0fae747843b7d07187edd4f35d0069a7b02ce89cc/pysam-0.15.4-cp37-cp37m-macosx_10_6_intel.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,526 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/46/d3abc41217b9cdd97109ab648094915ea55038bfa1d7d880012652704b37/pysam-0.15.4-cp37-cp37m-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,526 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/ee/2c5dacd21d02d3bb7c7baf03dba8f42bc4af8b02370b7e52b6e5425d2366/pysam-0.15.4-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,527 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ae/1d/8569d5bb7592afa48796e2fc743372eb690c776fe21dce0ccb9607a202cd/pysam-0.15.4-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,527 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d3/77/b885532e487e15db1b78fa2ecf00ef6edf5f4743025080941f60924da6ea/pysam-0.15.4-cp38-cp38-manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,527 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/78/63/0e143ae469f418cfab28fb165936d4101e1b813e3ce657762d51723ab38a/pysam-0.15.4-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,528 Found link https://files.pythonhosted.org/packages/25/7e/098753acbdac54ace0c6dc1f8a74b54c8028ab73fb027f6a4215487d1fea/pysam-0.15.4.tar.gz (from https://pypi.org/simple/pysam/), version: 0.15.4 2026-09-07T10:34:35,529 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/55/6f5ce9cfe9631c32b58d50be54b2d1ef7e53937d6e9208ac98ea41cc264b/pysam-0.16.0-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,530 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1d/c6/49045eba4ae325d15e9de03802a633fe0d8e9ac2d02ad6de723ca99a9772/pysam-0.16.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,530 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9c/24/537e86533e773c3dcb6bd05de60bf118cf8ccf60dcf24386a5c3807120bd/pysam-0.16.0-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,531 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/92/44f62c9b75b8f01f4671e7d4ac0951d3379126c7e2d280ebdcba3d7cb0df/pysam-0.16.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,532 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f9/21/dc7ec647d83a21a3b805a20f0039f466d5cfd4acc40f411aaf78da83ebb4/pysam-0.16.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,532 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b6/ad/442c56d798a3e8c762f71af8c8c7f75c16599f6e51e1f6dd4df1688ad6d7/pysam-0.16.0-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,533 Found link https://files.pythonhosted.org/packages/18/74/69018650a6ec9dae2eb2f710e158fa395134ce579c605f152e41890e7f3c/pysam-0.16.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0 2026-09-07T10:34:35,534 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/57/65c688a9f5757c82fc3954e5562725dbeaf3866f13d71d92d715263cd707/pysam-0.16.0.1-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,535 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9b/ab/a7f2637b5bc8fb278aa9b5a5d4eab70856625c09b1d95328e3b78132847c/pysam-0.16.0.1-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,535 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ca/09/ad780f4430777a7bfca63ee2d4d4584436d2f31f010d6bab743cfc97da48/pysam-0.16.0.1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,536 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/87/a1/73e80a7a873f3fb0e52d368a4343eb9882b737c932b95020d82251f1087e/pysam-0.16.0.1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,536 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/20/85/335857b9888f6d9a13b03a8f21b0a6228b180c361631d9d70e7be3e22163/pysam-0.16.0.1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,537 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8c/e6/a26fac418a7481b5ce1ffc162fe033edc9a935536f893a0838842c011371/pysam-0.16.0.1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,537 Found link https://files.pythonhosted.org/packages/99/5a/fc440eb5fffb5346e61a38b49991aa552e4b8b31e8493a101d2833ed1e19/pysam-0.16.0.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.16.0.1 2026-09-07T10:34:35,538 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a5/28/88c9bc6527429dc7de1e8eee674cea4c9c6a0e6791b711a7dcf28ce96592/pysam-0.17.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,538 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/88/721b1d38c80f8183887dadc96be3422cdad13fb0acc7ffa73594f9bf1dac/pysam-0.17.0-cp36-cp36m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,539 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/ef/6e7342dbe0571fa078bd312f07dcb9b0693b89f8f6fbdf7876e4423374b9/pysam-0.17.0-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,540 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/99/f7/e01c12c24e73fdf2d87cc601ff119a4e175a6215efe9eb7b19c4ad37e22c/pysam-0.17.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,540 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/71/7b479540c2baf07a082cf266d0ca34c73f8c77298fad12942225c7d580ac/pysam-0.17.0-cp37-cp37m-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,541 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d7/67/72012321601a2a0ff98903a4d5b71f695682baa034f10d6f675c9c8d0aea/pysam-0.17.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,542 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/47/4a/63786ee93e636a16c478a06aa2589fb9280eb41199dfc2182313ff56c3f8/pysam-0.17.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,542 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/02/9f79e6d100f3520e9dd33398ca5727d126fb81075ed78d797c3cf8eb8f3c/pysam-0.17.0-cp38-cp38-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,543 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/22/94/f6b8e682f9456ff7e29715207169c0eb2d5a98741d82bc89daf3fa048f7b/pysam-0.17.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,544 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/b6/1534473335178ece5b2133337564db90472b12b8dffe21124445b1847457/pysam-0.17.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,544 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/24/21/01fdca4c351f969629556a720599ea2daca3ce0bcf7cddc4b7c78b83da17/pysam-0.17.0-cp39-cp39-manylinux_2_5_i686.manylinux1_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,545 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/af/723d22ff52b846efdbb693e00e8bdbc39bdcb2952b1deeb8551a9c842691/pysam-0.17.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,545 Found link https://files.pythonhosted.org/packages/bf/a6/b1802ac26bb501ce8dada6f41dd83cdf591ecc834f2c208b07c6d97eba84/pysam-0.17.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.17.0 2026-09-07T10:34:35,546 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/63/9a/d75f5da85e0bd0f9f56a6a70dbd01a27c06dc6e22a5821b0ed38abf4b78a/pysam-0.18.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,546 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/77/72/e3ca6db84546a87fe2932c0078a6f85df62b5358e0a34ac7225bbc23fc52/pysam-0.18.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,547 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d8/01/c2917cad72433c4fad038b80cfd52eb79e9364636cd581efcc5fa1a6e0e0/pysam-0.18.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,547 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c5/10/a07e015f79b8f3a946a5f960cdf817e75bce99498acafc534b3355c73fa9/pysam-0.18.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,548 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/df/d556f87e14106fb467be0a0c9a960930f5e6d0d825c99060e248831a3457/pysam-0.18.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,549 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/69/9f/9be10fcf302feb446244d4691008a4899e94e19b3c8aeea461bd89c7ec3f/pysam-0.18.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,550 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ee/d2/ee6a3cb818db9c8cca8e7edd29526e2dca93fed1316a6c6cf7a9465a5b3b/pysam-0.18.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,550 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/0b/ae4a2a28d7f84f6bb09de5392e093c17a3d232b902b54bd3415b0919c9d8/pysam-0.18.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,551 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b9/bc/2df0c67e2c2d6130b01fa0e4f8c137d5749bfb3d618d1c6a7dab450133aa/pysam-0.18.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,551 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/35/9a/dd9abdaacae2c23982612a218810f866e3f82ef3925f305d640bc9df7f28/pysam-0.18.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,552 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4f/5a/cfb4cb6102335003a238e6d98e31ca23b42c9bef79cdf4ee55a1ab8b4cac/pysam-0.18.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,553 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/41/0f/4ffdea619a8898c936f6f1b909759486167976d761fc265f931119f0da1e/pysam-0.18.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,553 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/32/fb/4b78459c42ed9e7f5cee1304b6ecedcfcb74843619855ca4a1f15704a4bd/pysam-0.18.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,554 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/52/19/786e6b77ea6d3545ee145179da8d3d7a07ee9480a930ad6c647bf1e764f5/pysam-0.18.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,554 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b3/8b/13f22de05979c3aa2d2fb1c6627cf1846a59677ee457d30fe6e528d5938e/pysam-0.18.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,555 Found link https://files.pythonhosted.org/packages/15/79/00249a37089a6aecb70a4080f8af8d88e7005e2019c71e505c3ad3a0a018/pysam-0.18.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.18.0 2026-09-07T10:34:35,555 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/45/0a/2b0c483ea77567834b6e8185cd17cae2e40cca00534c5d8d61470b9efa90/pysam-0.19.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,556 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/17/4e4228ce33b8064b72266e68145911080eea227568a6b9c788e74ce5536f/pysam-0.19.0-cp310-cp310-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,557 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/a2/021bb0875543d0712823884c41b25e52189315a6081fdf53a32861382b37/pysam-0.19.0-cp310-cp310-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,557 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/b2/e1f9fff5d7c6afd26ff1b1798d5404822d99185cebbf3ade43ceed4e6a7b/pysam-0.19.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,558 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2e/a2/38e006ddb689d20c7842f7f00176f4f3c92a881350df67dde9c5894f8c7f/pysam-0.19.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,559 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ea/37/3c0c1ab1ad34d8c67db3052cb9301daeddedd3c84289b61cb95872324570/pysam-0.19.0-cp36-cp36m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,559 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/45/c5020545abf3138c1f94a5324bc59dba5b4e42634fafebb171dc6fe13574/pysam-0.19.0-cp36-cp36m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,560 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/49/a21697b94eac17fa3a73c419c8bf999f5bef8d37e03c3dbfc987c7709572/pysam-0.19.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,560 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e0/bb/26dabfedf33529cd17ea859450b46c2547b73aac6eff90573d1b8154abd1/pysam-0.19.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,561 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/da/70/79fec72c55234486f516684225a76903228511ba672783c245d0d4409a1b/pysam-0.19.0-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,562 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2a/6f/159e60484c50fabfac44783edce6208f1b8864eb001d690550a191f154b0/pysam-0.19.0-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,562 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/09/56/16bdbd513b9d9df090ce7d5d03eeaa26b794b109fefda4fb8af7165446b9/pysam-0.19.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,563 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/79/a7/da0e9848b3a78c5c3770e8b77ae3e46dc42f0f8e7f1239e825a7a9c1fac1/pysam-0.19.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,563 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dd/c5/8bb6517beb7acc3bb384ca98a66c9286003a946643bfd6de3ed1f9ea63a7/pysam-0.19.0-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,564 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3f/ee/24ddc6dd4425d83bf9fb0b24aa840134d99a09509d819b6b1393fcb27e16/pysam-0.19.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,564 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/41/4b65a3840c8bc14a4c97d9c66f66a6c08a30d8cc58ef9b45ee9de3bf5fe4/pysam-0.19.0-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,565 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/05/28/475ceedb85a8ef357af5b5394e9ef4ae0a317de651ff9ac6307e6f527b2d/pysam-0.19.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,566 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7e/fb/347f914e5873ec7405b95891fa605c3330d24462f00e7d230b7eb8e3df4c/pysam-0.19.0-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,567 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fa/31/570861d7b2eb6d605454a80ded377a0945bcc0cd19e804f29503d0f38aca/pysam-0.19.0-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,567 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/03/86/c40d02c99a7da3026ed69add5b2581a31f8d18676f2401811df227d17655/pysam-0.19.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,568 Found link https://files.pythonhosted.org/packages/ee/95/aef9a843807c00bb6b4e6c0cad0e69aa161ecc0591f3ece985fd24298f21/pysam-0.19.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.0 2026-09-07T10:34:35,569 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a7/82/968480f3e29bcc8dfd8b0a70654eb9e68f6b4d1e82e2a097615a8fa23d1a/pysam-0.19.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,570 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8f/fd/ff98658c0ca63a18269937330229447bcecda36845b896bc53b0ccf0e3c8/pysam-0.19.1-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,571 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b7/fd/2a054df7bed8080b6e973d5cece0c1a0b2b29fc7caec305bd74a957a4694/pysam-0.19.1-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,572 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/85/74/25e9707eca858bd1d838673798da26388e4bb70b5055e6a932857e8d7193/pysam-0.19.1-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,573 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/42/b8/22dca6472627ca6db890b8b96fe3072c1664bcc8dea0de72bc4ad5d5c06d/pysam-0.19.1-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,573 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/4e/80/6a74aa85894649e1fe6c54cc967b34c5038184504b30babb2dfa4e659aca/pysam-0.19.1-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,574 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/16/9698f98a5158e6a54af67a690791e96de5e7bec25fc0a85c71f07562d4dc/pysam-0.19.1-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,574 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1b/76/a240c320d38f7b1b0276ec813a86b62706d0889e10e45a3b75199d46d21d/pysam-0.19.1-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,575 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/9a/b5331a776d809d480ae8de43e3dfd4f4f95e0c8fde2ae7ba1834f55541c1/pysam-0.19.1-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,575 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/06/3f/19b41f46e1d3d87c436953561d58b13cd7cb0d1cb427dab43219ac772d21/pysam-0.19.1-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,576 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a3/df/d21eb45113df10eed4643a3dccc88dcc9ffaaaa68b05cc64c95224e17682/pysam-0.19.1-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,577 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/89/aa/8d3f39218e6195306226bde4501ca472ea6a949bffaae3ed524a0979d197/pysam-0.19.1-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,577 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f5/b8/0d014ca37b39e082de98c8e663082ffc2dae5ee96ce9781527f5f8e1339d/pysam-0.19.1-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,578 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/39/d6/3dcb9d0304c265e95bf2f75e1f3caa1c9994569215f513f164bef22b8ff6/pysam-0.19.1-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,579 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/16/3a/c8705be2ef8c58abf5acd99d9acc4da2b4587db883622fbbe4064d79cd7d/pysam-0.19.1-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,579 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/69/4618c6f6fc55fc014f32b273d572244244180dd2c38c21b3a4bd4b7db482/pysam-0.19.1-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,580 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c2/ba/ad4f8bf3c1040c383480315dc95430c191ae5efc90e425498b84f7b277d5/pysam-0.19.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,581 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/18/87/deed4855181dd5c2ebd0781aa80e8d2978d43b0ce0faefec609b45bd2767/pysam-0.19.1-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,581 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a8/21/97ca4f1e0766aae90bce672581edfbd791656f7b65689dc38de6c906ee86/pysam-0.19.1-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,582 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a6/b8/ca778d0daaf989a10afac71db2427784b430b2b73c586cb9a0bfa408afd4/pysam-0.19.1-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,583 Found link https://files.pythonhosted.org/packages/a0/10/f6d705984838f8620ff597dd99d3904aea7727b4824bee22de8f44b4ebd4/pysam-0.19.1.tar.gz (from https://pypi.org/simple/pysam/), version: 0.19.1 2026-09-07T10:34:35,583 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/12/e8/1157591647bef8afbdda82b3a9aeeacc3b57dcff22ec546b2b7dc03641a2/pysam-0.20.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,584 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/10/b5/1fe09bbff3ea6bbb6d8211758736327144c00505204a942bb312f5a869c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,584 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e5/67/42f8148cdc23559593023a4394b3043c280efc1439dd2f5f414f38e6f2c1/pysam-0.20.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,585 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/90/6408a9015530685cc76182605ffc3ec5ecf20c194ef2fcca287b289d36e2/pysam-0.20.0-cp310-cp310-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,585 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d4/48/35ffba4dcfda138c0722fefa986584d53614c2d049ab1fb67d9d87a00c0a/pysam-0.20.0-cp36-cp36m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,586 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/76/2d/0d56cdb2b0a8a9823a3a221a551d6c630815f0c407a33d5ce1c47910029a/pysam-0.20.0-cp36-cp36m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,587 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b2/23/7091e3182e685a7832425178f6b6e73593f9cff0ba51b5a71b43ef2525b9/pysam-0.20.0-cp36-cp36m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,587 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e8/2c/f989a55927eb416520e64ee711665ef589b8095a385c2564e1e15226e597/pysam-0.20.0-cp36-cp36m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,588 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/6a/8d73eda449bede59734254688ccb182493667467aa8c2be0dbf64fa68689/pysam-0.20.0-cp37-cp37m-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,589 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/eb/65/e69e94905ea18ee478066b96863ef2d91f026661f4bb18106f6b0a532f24/pysam-0.20.0-cp37-cp37m-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,589 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d9/49/a5d747be0e8f0044f52610ceed25b27a15a419b3f46f425507636f137484/pysam-0.20.0-cp37-cp37m-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,590 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1a/f1/05fa22e7917afa8b0506d9dadc885324544f759d8a25cdd331bdad47d580/pysam-0.20.0-cp37-cp37m-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,590 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c3/2c/23e8e5cdd6a91a50923653a77c05db872f865a43becac463f0b2963a8199/pysam-0.20.0-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,591 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/31/e7/019194574aa007c7dd6fe7ac1558d540fb397da4e8eb765542fdb92ec25b/pysam-0.20.0-cp38-cp38-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,592 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/34/3a/b0d850cfd1fc16ebfd44015af3dfe300eb3f7a39f495629b30685daa9e50/pysam-0.20.0-cp38-cp38-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,592 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/58/3f/746463a52b7e43ccd7ace167a4c64f96cb8a5fcd14a3cdae9c36deb28d41/pysam-0.20.0-cp38-cp38-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,593 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/db158ef30ca895c78c9265f70be9c8e225857d2aa62825d879c775879cf7/pysam-0.20.0-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,593 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fd/97/91a89da0db78e9f60d9107131b5725dd114d6c109cd78728b1c793dd884d/pysam-0.20.0-cp39-cp39-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,594 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/2c/22/85a2be2a21e3c31657b6c4726237dd1335faff64aeadb999f31671a3cbb5/pysam-0.20.0-cp39-cp39-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,594 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ad/dc/93c92f425e61b22ae175cf4a83d8ba192bc82e9671f1cce262a92ae86911/pysam-0.20.0-cp39-cp39-manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pysam/) 2026-09-07T10:34:35,595 Found link https://files.pythonhosted.org/packages/e3/ad/b300abaf0de2834104b671db5aebe71616d7a36fa09a2b8a03068eb7e932/pysam-0.20.0.tar.gz (from https://pypi.org/simple/pysam/), version: 0.20.0 2026-09-07T10:34:35,596 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/f8/301c2f966eeefa53ed5447b8909a7b123971d711794efe787dc2601ab9b4/pysam-0.21.0-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:35,596 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9f/d1/b5a212aeb99ba3a17a93ea5846bc36fd0c9e5dc26d9395c89b72243813ca/pysam-0.21.0-cp310-cp310-manylinux_2_24_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:35,597 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8e/6b/48e0bed14999ca1c6bf9c8127d9c0df9bd0de97159d4d8169aed0e2a1e9d/pysam-0.21.0-cp310-cp310-manylinux_2_24_i686.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:35,598 Skipping link: No binaries permitted for pysam: 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https://files.pythonhosted.org/packages/af/de/f7e57c109e4389e2b36c387588ff685c2379af750400d33d9ff60896c1b8/pysam-0.22.0-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:35,625 Found link https://files.pythonhosted.org/packages/35/22/3d01778c13f1103401313f1232c1c0596d97aaee21c1d60564640f3049bd/pysam-0.22.0.tar.gz (from https://pypi.org/simple/pysam/) (requires-python:>=3.6), version: 0.22.0 2026-09-07T10:34:35,626 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1a/69/8bb2a2c480f3b50f31da6d2b8a9a8b4439be09def92ead91b2347ba9c962/pysam-0.22.1-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:35,627 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/23/dc/141cb9377349ad99673764090c483bf2f768768592f0de8fa378a87b8d96/pysam-0.22.1-cp310-cp310-macosx_11_0_arm64.whl (from 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https://files.pythonhosted.org/packages/79/83/da2a48e27140704ce2b9482ef75ae0b47f647616f99fbf2ba4510341fab1/pysam-0.23.2-cp38-cp38-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,699 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/62/95/08c724423348afc05be0c5d4e8ed3e080c87cdd571f8c9b6829a9b43639a/pysam-0.23.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,700 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/33/23/2dd40665f139d03b3ecd1e4a59007aa124c27297ceb425dc7faea09d9857/pysam-0.23.2-cp38-cp38-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,700 Skipping link: No binaries permitted for pysam: 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https://files.pythonhosted.org/packages/f6/ad/43ededc53c433425863d54102f01fda1873bc023710a679155893bbbe4a5/pysam-0.23.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,703 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/13/85/ba39ea8bce5644bdba3ea0244454035c431076bc3881f763cc5b0d831a60/pysam-0.23.2-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,703 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/5f/8b/6bc8526993faa65eedf20f6442114b43c283538a6cc81e44aee35be72945/pysam-0.23.2-cp39-cp39-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,704 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3b/70/d58205bda8f7d018822a5709c02d83302acddbe3a4fde418fedab20c9c96/pysam-0.23.2-cp39-cp39-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,705 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/97/67ec04336b8e6b81e69fc3df907753d3216df6906f09b4d482298a718e75/pysam-0.23.2-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,705 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6f/87/154126c39e272b182fb368179c0e05c561dc34edfd224f31483a65ce86cb/pysam-0.23.2-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,706 Found link https://files.pythonhosted.org/packages/06/55/0a4898c9ccbf6e5e9a08ce6a47b32ad58c1b56fc85b810ae055e240de8c5/pysam-0.23.2.tar.gz (from https://pypi.org/simple/pysam/) 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https://files.pythonhosted.org/packages/8e/1a/79a2c1bea757cd432a2d67087feb1e3dc8226b49fc926f2d844b3badd147/pysam-0.23.3-cp310-cp310-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,709 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ae/ac/fc98ab9bc6bd5d1205fd71c7fd49e33663199cc66645ab0e8db1e572f774/pysam-0.23.3-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,710 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8e/0b/0ff157244e2af25e1a8a880f4d2c050d6b49791b32342dc8886a27d388c4/pysam-0.23.3-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,710 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/71/59/74eccdbb18a26a49d99b9cef50e3630b76b1c430756e6f04891d12f4d43f/pysam-0.23.3-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,711 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/de/12/ae4e639c9187bfd60f3110d9166bf079044e091011f400173bebf2740eae/pysam-0.23.3-cp311-cp311-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,712 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a7/f3/e8cd509f5250e0656076cd0f4a6c9e7d2c520e5599272a8519a3d50ca6ba/pysam-0.23.3-cp311-cp311-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,712 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7b/98/936efaa190ad843c71ca397addc02e676ea4fb389437e2ca0471ad39efb0/pysam-0.23.3-cp311-cp311-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,713 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/dd/432569a859c5820b882fb692628b0df7cc9de1fe61c5eb5b979df31a7720/pysam-0.23.3-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,714 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8e/6b/2a8060a279373eb64c5c77e7a0ef2e5bd0d3adc85623aa228d877038f2a2/pysam-0.23.3-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,714 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a2/6b/dd9f94da44463ecfddb7075f1048c044155c725d7d79fde2e7957561a3b0/pysam-0.23.3-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,715 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f3/e9/686e711a559a02e4c3ba0bc78cf031d9ddb525e9f0b2984d1b66536ba94a/pysam-0.23.3-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,715 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/8a/82/fca396e13969d1020956b02e567e0d357be0af0f3aebc2b4d97bed780a6d/pysam-0.23.3-cp312-cp312-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,716 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/df/a6/c100df6c8118b4ce1f9c086bb9cf5bccd4f71d05ceb2ecf474f3b0ea87b8/pysam-0.23.3-cp312-cp312-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,716 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f1/92/32e1b13f30f16fe2c948f9b9e04c6e7698beaa539ea1a2bcddc51ed6c9b7/pysam-0.23.3-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,717 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/fa/7d/ccfaa2d6f9f07b357696b07883d5c5471f980938c2293324631425d95523/pysam-0.23.3-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,717 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/88/87/55cabf614bcc96f4a548ab4cf5fe465dd562d193f4f4cd5246cc0a1a18ab/pysam-0.23.3-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,718 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/1f/2f/4708f52028610af96fa82e3ef46bcf96a35f1bd3c38aa6f015b31b578fff/pysam-0.23.3-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,719 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d9/35/e65f76cfa17d680017bbb61f2a2b3ad34169de5c3747ed4273c194ad13b3/pysam-0.23.3-cp313-cp313-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,719 Skipping link: No binaries permitted for pysam: 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https://files.pythonhosted.org/packages/55/0f/e7f1ff3a1cabc6c4486a7ee1b0506aedf2f5f8329760ac1f4e8032feef2b/pysam-0.24.0-cp312-cp312-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,739 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/11/34/877f20c2e5416e054036f6521fc6606ced8d2819bfb84979a2632b30db11/pysam-0.24.0-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,739 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/e0/5ef3228359045ee546cebd7ffa602699d4aaf9bf60dac3511afb8cbfa151/pysam-0.24.0-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,740 Skipping link: No binaries permitted for pysam: 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https://files.pythonhosted.org/packages/67/68/23e35297fa8906040f33db2908baf20e7f79a767a150cc6cc068b3135e89/pysam-0.24.0-cp314-cp314-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,746 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0f/61/8a4c6af099d7d5e0026bc4cdbf9479efa396ef6a53d814e8e0faaed05f2a/pysam-0.24.0-cp314-cp314-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,747 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/14/6d/106e39a8ed7f3cce18e819c475d15828f6bb67202410e61b8d0e5c966e2b/pysam-0.24.0-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:35,747 Skipping link: No binaries permitted for pysam: 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link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/3c/41/f64118e637b26e9b5fd33dc6da68cf9ccc835ee4463613584eb8c9c274c9/pysam-0.24.1-cp310-cp310-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,757 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/17/42/bd0bc04a61d3bdc7460d97f771787db9c59056348a9bf5afd98de0baef6d/pysam-0.24.1-cp310-cp310-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,758 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b8/ab/25f3d1ee4b214875e7e0eda4ddb61ee70cb654fdef5242d8841b2681b147/pysam-0.24.1-cp310-cp310-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,759 Skipping link: No binaries permitted for pysam: 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https://files.pythonhosted.org/packages/41/1c/c42de8b2f3ead1fa48067a7eee054d9b242e493261bb0c59f054c9537788/pysam-0.24.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,761 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/0d/bd/fc983700175e925e4c671bdc11aa30496b4cc6674ba6bfc8d01e1dd78fd5/pysam-0.24.1-cp311-cp311-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,761 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/62/c2/ffa499e23512c20ce0821864dd75447cf01dd7d2a65e88ddae792f787526/pysam-0.24.1-cp311-cp311-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,762 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ac/8b/6fdeef39a463f0b9a6caef0bef94440787e8257d32c0cbf5b69f78793932/pysam-0.24.1-cp312-cp312-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,763 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/b5/e3/1f19fb881fab22d6d61a5730a02e1717e2203dd61dbc4b4a9122ac99e631/pysam-0.24.1-cp312-cp312-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,763 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/28/89/d98c26790de1a9919a7cb7fa6abdd1b9a3de69b50fd218ba51731b555e08/pysam-0.24.1-cp312-cp312-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,764 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/79/9b/311c844a72b22b87b0bab85a448580650f11da67edf98e8358138cfd9831/pysam-0.24.1-cp312-cp312-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,764 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f7/ec/ff189a7a348b6fbd3832fc57a73c5569e2ff2ef24ce087bda8b73d8bf2d8/pysam-0.24.1-cp312-cp312-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,765 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/cf/4d/cee15526047bf71db881b33b0777a6d6b262659c7529027d1fa7d8718539/pysam-0.24.1-cp312-cp312-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,765 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/40/dd/24b130d14e32aab94d98c0d4455464e597dbbba8d3a8371fcbf9b4d90f65/pysam-0.24.1-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,766 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/64/5d/4c9752e034e9f0e27477efd68273d2835eedcffdb6b19d9a91c427773baa/pysam-0.24.1-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,767 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/7c/0e/3dc08db282ac19cbdc6fa464da7472a046ecf29565be3a98497f918bd0a0/pysam-0.24.1-cp313-cp313-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,767 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/35/ba/02b95fafb87b1ff6a4f6a79b06d70bbaf4657f86e95b993ac10104a8f804/pysam-0.24.1-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,768 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a4/43/b45f9f89053ad25a1bb76d391c630f5492de5dea37d36f2d96e6ab7c6f4a/pysam-0.24.1-cp313-cp313-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,769 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/27/21/385b43c1b0743252bdd3a1a0228cba1648b585d3a257342e19a8f7387302/pysam-0.24.1-cp313-cp313-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,769 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/9c/11/31157b5ab9b814e1c8ad6955096143bde70260177eb70ce7d73f886d739f/pysam-0.24.1-cp314-cp314-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,770 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/48/e6/df265ba6504499a93b98f35f62227c3db1f8eb27eec51105eb48973e35a0/pysam-0.24.1-cp314-cp314-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,771 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/61/39/530a9ebeacb19e33f8ed2f1d74696ea29e90d69015fd8c8baa3be8b185b2/pysam-0.24.1-cp314-cp314-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,771 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ec/1a/da6bfc10e301558e6ba481dcf722dbdd90daf14f4c4dfc6fb011630640e0/pysam-0.24.1-cp314-cp314-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,772 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/ae/c2/42c4d6c889119fa89f93119dc33fdd3331a6dffccce042b6281cb0a98eee/pysam-0.24.1-cp314-cp314-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,772 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/86/7a/231623e056c6fc87f051880986f9d06423aea54683690d784ff535c8094f/pysam-0.24.1-cp314-cp314-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,773 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/dc/ab/561b71a720a9540ea1bfc9d1d2c2a4a0282a9ff30fdbae38af87118c81d6/pysam-0.24.1-cp315-cp315-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,773 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/49/c8/7d533dd8f399bb5760afa78c9c6aeddea42b0d31769c171f5995853bb57f/pysam-0.24.1-cp315-cp315-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,774 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/67/47/ef5d14fde4f84882b6bed5241cfdbfd2971536a82e89b2b69890b64a9403/pysam-0.24.1-cp315-cp315-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,774 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/f8/10/43d5b23c54eb83649fffae04112914a033a849bb14b46a8517e097faf1b6/pysam-0.24.1-cp315-cp315-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,775 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/70/b7/d92607e8d302d4665a4e5eefe0a9bef8b18279f34d18e0c2e6c86614c326/pysam-0.24.1-cp315-cp315-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,776 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/21/21/975bdd2e09ed82f27c5adbbf985360fc4cf637998fc6840b6b30585cea43/pysam-0.24.1-cp315-cp315-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,776 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/e8/18/e87b3ee243794826274d99d0b3041c62c8607a8bb300b712f4f76e8780ea/pysam-0.24.1-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,777 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/25/22/83d513d0e3404865ae0aa51a42ceb0f8cf2444ebbdf35ca7dac977701fc3/pysam-0.24.1-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,778 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/d4/95/50f7dfb0fd283258f1c6ca65198929700b4753a389b5464adfc9b3cef970/pysam-0.24.1-cp39-cp39-manylinux_2_24_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,778 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/6b/31/9e6af1611bb63c242afa7fdd1c025d302e0c2f443af5eb4ef369d7938b1a/pysam-0.24.1-cp39-cp39-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,779 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/a9/4b/049aefbb04be477d1bb5b3bd0bb1bc078ecae6fd04e3bb546b39fb370e0e/pysam-0.24.1-cp39-cp39-musllinux_1_2_aarch64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,779 Skipping link: No binaries permitted for pysam: https://files.pythonhosted.org/packages/c4/56/c1cf6ed6c4bfd4f0c24e4832d3b3be29991b12f138f7cdde6b811b782022/pysam-0.24.1-cp39-cp39-musllinux_1_2_x86_64.whl (from https://pypi.org/simple/pysam/) (requires-python:>=3.9) 2026-09-07T10:34:35,780 Found link https://files.pythonhosted.org/packages/01/d0/e9271669f97ce454d1aa97f9ce0d3e84376295f352ad6c5d2c3998e38f66/pysam-0.24.1.tar.gz (from https://pypi.org/simple/pysam/) (requires-python:>=3.9), version: 0.24.1 2026-09-07T10:34:35,781 Fetching project page and analyzing links: https://www.piwheels.org/simple/pysam/ 2026-09-07T10:34:35,782 Getting page https://www.piwheels.org/simple/pysam/ 2026-09-07T10:34:35,783 Found index url https://www.piwheels.org/simple 2026-09-07T10:34:36,134 Fetched page https://www.piwheels.org/simple/pysam/ as text/html 2026-09-07T10:34:36,182 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.24.0-cp39-cp39-linux_armv6l.whl#sha256=0ec7cf23c80802f1b11edbccd395edad20a1c8f907e1a447e3ab78c87f62f2fb (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:36,183 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.24.0-cp39-cp39-linux_armv7l.whl#sha256=0ec7cf23c80802f1b11edbccd395edad20a1c8f907e1a447e3ab78c87f62f2fb (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:36,183 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.24.0-cp311-cp311-linux_armv6l.whl#sha256=c4d511363751a313bebc4c997232f3c9401d67345e7732831018948703c584fb (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:36,184 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.24.0-cp311-cp311-linux_armv7l.whl#sha256=c4d511363751a313bebc4c997232f3c9401d67345e7732831018948703c584fb (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:36,185 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.24.0-cp313-cp313-linux_armv6l.whl#sha256=068d6e30bc721aacb5ddbeef54877121a6b426013b6add1d70e8406f94c760fc (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:36,186 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.24.0-cp313-cp313-linux_armv7l.whl#sha256=068d6e30bc721aacb5ddbeef54877121a6b426013b6add1d70e8406f94c760fc (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:36,186 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.23.1-cp311-cp311-linux_armv7l.whl#sha256=0c081381938d072c28b760226a343c55363318b59ba7676eb6c70d6db9f3e7f0 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.8) 2026-09-07T10:34:36,187 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.23.0-cp311-cp311-linux_armv6l.whl#sha256=48851994805a29b955b8b7beb5cadd5399cd69f8b2a8e07532b0fa0a4e98981c (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,187 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.23.0-cp311-cp311-linux_armv7l.whl#sha256=48851994805a29b955b8b7beb5cadd5399cd69f8b2a8e07532b0fa0a4e98981c (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,188 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.23.0-cp39-cp39-linux_armv6l.whl#sha256=dd6c49d1fe99448c798f4424a82f36dfb8a2f2246799f5e5cc2b3c2ccd1ff571 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,189 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.23.0-cp39-cp39-linux_armv7l.whl#sha256=dd6c49d1fe99448c798f4424a82f36dfb8a2f2246799f5e5cc2b3c2ccd1ff571 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,189 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.1-cp37-cp37m-linux_armv6l.whl#sha256=d7890b6c500754f344eb67d7ce8cd3bcfd9d257615d5f7a4a256caa3e2dcf990 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,190 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.1-cp37-cp37m-linux_armv7l.whl#sha256=d7890b6c500754f344eb67d7ce8cd3bcfd9d257615d5f7a4a256caa3e2dcf990 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,190 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.1-cp311-cp311-linux_armv6l.whl#sha256=00a94665cab5e16c8b006ce9e4eb95f21e9d04afa3762f0d29fbed42911c7919 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,191 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.1-cp311-cp311-linux_armv7l.whl#sha256=00a94665cab5e16c8b006ce9e4eb95f21e9d04afa3762f0d29fbed42911c7919 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,191 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.1-cp39-cp39-linux_armv6l.whl#sha256=55353610d4249fa4984342fdbecae3e12b833cd6b14f6ba410a74f25bc8df08c (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,192 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.1-cp39-cp39-linux_armv7l.whl#sha256=55353610d4249fa4984342fdbecae3e12b833cd6b14f6ba410a74f25bc8df08c (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,193 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.1-cp313-cp313-linux_armv6l.whl#sha256=e6a84557b59507c0151dd7bed5c649539374566dfd9e0737fe99850434dbc6c6 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,193 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.1-cp313-cp313-linux_armv7l.whl#sha256=e6a84557b59507c0151dd7bed5c649539374566dfd9e0737fe99850434dbc6c6 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,194 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.0-cp311-cp311-linux_armv6l.whl#sha256=5a4512ae0b78c15a4e6cdab0dbe74604e8dcc7dea326c81d676e6c5c2a8df26c (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,194 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.0-cp311-cp311-linux_armv7l.whl#sha256=5a4512ae0b78c15a4e6cdab0dbe74604e8dcc7dea326c81d676e6c5c2a8df26c (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,195 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.0-cp37-cp37m-linux_armv6l.whl#sha256=4ce671b9486dca0a5151703c3b70aba44b745ac8a49205759b241a1a3906b729 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,196 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.0-cp37-cp37m-linux_armv7l.whl#sha256=4ce671b9486dca0a5151703c3b70aba44b745ac8a49205759b241a1a3906b729 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,196 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.0-cp39-cp39-linux_armv6l.whl#sha256=8f9c27a435ceb9a0352306fd0a0dc107b50456a050ea10ea077af928352babc6 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,197 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.22.0-cp39-cp39-linux_armv7l.whl#sha256=8f9c27a435ceb9a0352306fd0a0dc107b50456a050ea10ea077af928352babc6 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,197 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.21.0-cp37-cp37m-linux_armv6l.whl#sha256=9c3272be6b4de106121816d6293381c004b78ba8a3d7307e48b0a594cef33224 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,198 Skipping link: No binaries permitted for pysam: 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https://archive1.piwheels.org/simple/pysam/pysam-0.21.0-cp311-cp311-linux_armv6l.whl#sha256=528cb2c664f544f58a4e15ecb6d9e1c6bcfee699d56f0c438f627fa88e6a58d8 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,200 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.21.0-cp311-cp311-linux_armv7l.whl#sha256=528cb2c664f544f58a4e15ecb6d9e1c6bcfee699d56f0c438f627fa88e6a58d8 (from https://www.piwheels.org/simple/pysam/) (requires-python:>=3.6) 2026-09-07T10:34:36,200 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.20.0-cp37-cp37m-linux_armv6l.whl#sha256=4081475d7ce179d2af0551894162bc12f3ebc2a9b5972cc673d6544ca9e2ceee (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,201 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,203 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.19.1-cp35-cp35m-linux_armv7l.whl#sha256=ff1cdd21402402c39bafb46fe2a8a7ce876b42357bca356a304320b873cb2282 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,204 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.19.1-cp37-cp37m-linux_armv6l.whl#sha256=2330513e39b52a262391ff1a6d42ed45855452935626eebcc5d881eb4be1b2c1 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,205 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.19.1-cp37-cp37m-linux_armv7l.whl#sha256=2330513e39b52a262391ff1a6d42ed45855452935626eebcc5d881eb4be1b2c1 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,205 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.19.1-cp39-cp39-linux_armv6l.whl#sha256=048151df693a8d132abc090b4b7c148deb484684316e3a945d7771fb140740b1 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,206 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.19.1-cp39-cp39-linux_armv7l.whl#sha256=048151df693a8d132abc090b4b7c148deb484684316e3a945d7771fb140740b1 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,206 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.19.0-cp35-cp35m-linux_armv6l.whl#sha256=7e6c3ed0b982b419a6598567be404d2d3950648edae8f3abd3c23d3e7d98d163 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,207 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.19.0-cp35-cp35m-linux_armv7l.whl#sha256=7e6c3ed0b982b419a6598567be404d2d3950648edae8f3abd3c23d3e7d98d163 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,207 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.19.0-cp39-cp39-linux_armv6l.whl#sha256=abc5f7ca00dd7854f7f5be295b785c43b5b3c29f155ad73f0da2e75af9bbd0b6 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,208 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.19.0-cp39-cp39-linux_armv7l.whl#sha256=abc5f7ca00dd7854f7f5be295b785c43b5b3c29f155ad73f0da2e75af9bbd0b6 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,209 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.18.0-cp35-cp35m-linux_armv6l.whl#sha256=43c9d64012c0bfedaed47b3e6a06d9191b018d315a9894ec814d3f6482421c05 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,209 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.18.0-cp35-cp35m-linux_armv7l.whl#sha256=43c9d64012c0bfedaed47b3e6a06d9191b018d315a9894ec814d3f6482421c05 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,210 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv6l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,210 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.18.0-cp37-cp37m-linux_armv7l.whl#sha256=ffb98d45af97cc1a83877daaa66e751cac89ef2bafb7309355bcc7aad746cae7 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,211 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv6l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,212 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.18.0-cp39-cp39-linux_armv7l.whl#sha256=bced640fbf8ace81d87f3987edb796cd87595e2187087985e55a19a09f61beae (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,212 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv6l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,213 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.17.0-cp37-cp37m-linux_armv7l.whl#sha256=2fc2f9d80047eb421cc31c6ae3a0c03344b1d5f4dd4d930bf3a77a1c996ff4d5 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,213 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,215 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv6l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,216 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp34-cp34m-linux_armv7l.whl#sha256=eda5dc98fdf3820ff830d0bfdcf4f1cd4b165073480d35425d31270ff4461e91 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,217 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp35-cp35m-linux_armv7l.whl#sha256=8653f518db5c738aab3b6a12e0fbfd36245ddd78375cee9a0f6e5c066070f892 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,217 Skipping link: No binaries permitted for pysam: 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https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,220 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0.1-cp39-cp39-linux_armv7l.whl#sha256=5dd1936e862f220b58ec528032224b67ebb11d86663004141e538c25818d7d5d (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,220 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv6l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,221 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp34-cp34m-linux_armv7l.whl#sha256=be9af17f6da8f632329820756855738acaa0af49cfec713f718923b46a300231 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,222 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv6l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,223 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp35-cp35m-linux_armv7l.whl#sha256=3f2ab4eb88bd29ebdadb6a030db9daa1a08093930c19ee9d6d2e132d3cc7fbfb (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,223 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv6l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,224 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp37-cp37m-linux_armv7l.whl#sha256=0ea8f2a31eb4fe9b63faa9568018f24905a3eec27d604487bf016925d66a5e6b (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,224 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv6l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,225 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.16.0-cp39-cp39-linux_armv7l.whl#sha256=f362a21d3d76e12110a57f6a4318e7c6ce8d4428993de45100ee729c34870663 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,225 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv6l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,226 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp37-cp37m-linux_armv7l.whl#sha256=7cb3ca927656dba4156f14b6b3610b966278b18f444e00aea9ffac982ba819d1 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,226 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv7l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,227 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp35-cp35m-linux_armv6l.whl#sha256=514cc53d8ace068080cb48124d3a172bcad548b5fcb5c283c3c3595d5837c924 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,228 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv6l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,228 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.4-cp39-cp39-linux_armv7l.whl#sha256=4cfa381ee91c4311118a9780b7b07170f4f9550e5d5e4dd0da3bd4a16d7786fb (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,229 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv6l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,229 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.3-cp35-cp35m-linux_armv7l.whl#sha256=5c047d54e81b6a5b5e981f5cb06c1a254a88430aab077f1383a46f1cf3a89c53 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,230 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv6l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,231 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.3-cp37-cp37m-linux_armv7l.whl#sha256=8c6118b4d383a61894eae23d146e36c0f0afdf8b5743c53eab210b7211a4eb6b (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,231 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv7l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,232 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp37-cp37m-linux_armv6l.whl#sha256=3d027ddcbfc55b9a3f2d7783d1c40d6a7f4aac2f5553ff18b18b9a2db18c8818 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,232 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv6l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,233 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp34-cp34m-linux_armv7l.whl#sha256=5d8b5904f634744175e0a043ed83158fed4b4f550eda55f17f1daebdb8b96b55 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,233 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv6l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,234 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.2-cp35-cp35m-linux_armv7l.whl#sha256=820073712c7e0bf84113e262c24f403dc5cc2c1e99fdd2e4136805108492e779 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,235 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv7l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,235 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.1-cp37-cp37m-linux_armv6l.whl#sha256=4cf9c66d12eab8e186c6f9ae62025a81a1571339aa90fa8620e599e6b5914096 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,236 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv7l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,237 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.1-cp35-cp35m-linux_armv6l.whl#sha256=36c58484ffb0bc79775ede3b973fa8119a25e285a9aa1fd925c7b2a7585cd96f (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,237 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv7l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,238 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.15.0-cp35-cp35m-linux_armv6l.whl#sha256=40b2010ca6af5e85f9945799141129378049c795c08e72e1902be7afa7d8760c (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,238 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv7l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,239 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14.1-cp34-cp34m-linux_armv6l.whl#sha256=6809122ab699bd5343f81145b23d4b92fc0c763836707bf7a880cf0dfd6124c1 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,240 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv6l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,241 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14.1-cp35-cp35m-linux_armv7l.whl#sha256=5fc63ab19662a4ca7867b75a6b7a7c3572efd7dc7df32334fd63bd4aaf889c77 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,241 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv7l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,242 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14-cp34-cp34m-linux_armv6l.whl#sha256=7162669bbd0f8d7b5550fecaa602a09bb12f82e5d355c23e65b27fa86628ce58 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,242 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv7l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,243 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.14-cp35-cp35m-linux_armv6l.whl#sha256=df8dc9fd830a1e2e415d0e8066351e70e1a332e25f7e77c39a28580e9ce44fd3 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,243 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv6l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,244 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.13-cp34-cp34m-linux_armv7l.whl#sha256=11aaa19bb5ed9aa6d8c7966168380dfef9a21071e47c8b51b8a6d27938178859 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,245 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv7l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,245 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.13-cp35-cp35m-linux_armv6l.whl#sha256=d63b372a841d42bbc4c63b6147419a3174c1382c2188ac9560e195f44a06de72 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,246 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12.0.1-cp34-cp34m-linux_armv7l.whl#sha256=448531babc920f3709eac98ea2cf570cc10d0f7aa1b1e9be63ae30ed486e9b2c (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,247 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv6l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,247 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12.0.1-cp35-cp35m-linux_armv7l.whl#sha256=1632c7664591cdf1025c90d351eadf4e982f22e8eb5265f101e8c1bad3f2bfcc (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,248 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12-cp34-cp34m-linux_armv7l.whl#sha256=c94eb91b2a476b0f28dffe6194d72d1853055291b9453996e0414cf39391af23 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,248 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv6l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,250 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.12-cp35-cp35m-linux_armv7l.whl#sha256=822538c1598af9814465b2d57bd13f4a72f3084489090e3ad84abb3b9b7e5cc8 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,250 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv6l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,250 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.2-cp35-cp35m-linux_armv7l.whl#sha256=1f1f6f20aec143dc81cdc6ea8fb982878908d6be7fb215138f52a317af39b007 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,251 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv7l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,251 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.2-cp34-cp34m-linux_armv6l.whl#sha256=8b007f54c76d032f142f66ce3f52ab28ecbfe04b90140f1c094c7ee27a8efc20 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,252 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv7l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,252 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.1-cp35-cp35m-linux_armv6l.whl#sha256=541b1cec39154bca0eb370ea340d25e5f99906d5ab48ac2e9a6e36d07fe62acb (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,253 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv7l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,254 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2.1-cp34-cp34m-linux_armv6l.whl#sha256=9f13d6f9766fa718aab7a502acbeab90b9d973cd6104099d296c2123e17df4c8 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,254 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv7l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,255 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.2-cp35-cp35m-linux_armv6l.whl#sha256=3fd464df4ebf726c766df1e7259bf9ed27efbd15b054fea9ff61317c1642bdff (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,256 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv7l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,256 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.1-cp34-cp34m-linux_armv6l.whl#sha256=130adc0c1b0f703615373fe89ccad779c842d4f817d9eee51cb4d7f1d583fb66 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,257 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv6l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,258 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11.1-cp35-cp35m-linux_armv7l.whl#sha256=38bdff111afd0e08e7c45083834ff94f952d6b1d721effe141ee16709e8c43a9 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,259 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv6l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,259 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11-cp35-cp35m-linux_armv7l.whl#sha256=9e42cacee2c0d3d6262960825be47e53245b36b9176166d7a0c8b34793ab3e4c (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,259 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv7l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,260 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.11-cp34-cp34m-linux_armv6l.whl#sha256=caa6a1fe172960233e539844a6ec94ff5f730450b8e5d75546ed95e72093d251 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,261 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv7l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,261 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.10.0-cp35-cp35m-linux_armv6l.whl#sha256=430e1e1aac92b57c6061b2b035d1ce4a896772fdaecc3a7a6c79d20636998060 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,262 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv7l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,262 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.4-cp35-cp35m-linux_armv6l.whl#sha256=e08db72fe5fe0c0fdaaa68e90317bfd49d91724f88a0c7336ee58cb5434e057f (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,263 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv7l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,264 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.4-cp34-cp34m-linux_armv6l.whl#sha256=6d5642b4b9d4406ee1c1a1e6707988f7e1e1eb95175d6e696db12cc33239bdbc (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,264 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv7l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,265 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.3-cp34-cp34m-linux_armv6l.whl#sha256=91ff3cf00dd79a8388f4cc57b59b16e6b526c4162d6f76e880cfb98f9861d70d (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,265 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv6l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,266 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.3-cp35-cp35m-linux_armv7l.whl#sha256=a80a0b5409d947fd714eee1f6d5e417d80c81116ea054ad449f66cfffe7faef9 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,267 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv7l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,267 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.2-cp35-cp35m-linux_armv6l.whl#sha256=c720ae8dd1d59c930e40bd060397fa5a19b3ee23f5bf285b6691799ea1585c6f (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,268 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv7l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,268 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.2-cp34-cp34m-linux_armv6l.whl#sha256=92f79453d075cab8b9c95cc0a346d4190c95f9648f1edb66ed894e5fb1fae0b3 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,269 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv7l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,269 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.1-cp34-cp34m-linux_armv6l.whl#sha256=44559cce52369b4859a83b983afc5ab44d4a8757199ec1e09dad43c503615f26 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,270 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv7l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,270 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1.1-cp35-cp35m-linux_armv6l.whl#sha256=c1bd616061b68894916b9830ac6e0c3bda4cf391b2e0b12dc1909f09fdef5e1a (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,271 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv6l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,272 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1-cp35-cp35m-linux_armv7l.whl#sha256=8fd5cdc4e53ddd0cf566144d5bb0e6cd9e48f30e2f2e689a08929c7fe6436adb (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,272 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv7l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,273 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.1-cp34-cp34m-linux_armv6l.whl#sha256=eb027c4d0ca3fe3db175bb40d240b0006948161df1f6aee9bb37026023ed6ad1 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,273 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv7l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,274 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.0-cp35-cp35m-linux_armv6l.whl#sha256=95e7e97fc794ef3999eb115ee35e1b90e7599c0c4664e53509edbd95970b0253 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,275 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv7l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,276 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.9.0-cp34-cp34m-linux_armv6l.whl#sha256=339bad8ad3b9679676c129c90dec0e50726b9718bb1cb947865efbc0aed518c0 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,276 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv7l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,277 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.4-cp35-cp35m-linux_armv6l.whl#sha256=0f6e3e082682baee36123ad2dfdccc21ca209d7f6138ae8aa7eaa6cf846b463b (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,277 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv7l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,278 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.4-cp34-cp34m-linux_armv6l.whl#sha256=6847c5b03d052b38a4b9e2fecca445c28a2e1b739c6b78db6b35bb7059cc1edd (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,278 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv7l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,279 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.3-cp34-cp34m-linux_armv6l.whl#sha256=f9590cb1e4aa53d7fba838ab7f024ad1d6634af160a28030e42177d769107d7c (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,279 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv6l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,280 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.3-cp35-cp35m-linux_armv7l.whl#sha256=0e9f56eab761851799543b69d6789aedf7c3b4cf9f435b49924145ad17578da9 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,281 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv6l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,281 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2.1-cp35-cp35m-linux_armv7l.whl#sha256=06d7abe7ada0496d0562d699f3870f16b053149fde78eb8161eee3d6a1804e06 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,282 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv7l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,283 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2.1-cp34-cp34m-linux_armv6l.whl#sha256=3922a006fb3ebf65663b7b939cbf5910c86f5a7296cb7a3872d48922b4d8c797 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,283 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv6l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,284 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2-cp35-cp35m-linux_armv7l.whl#sha256=c81d7b98d9aed718e77d931e08c561c48a95c4ad3e041b26c88ca3673ecfcf7d (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,285 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv7l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,285 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.2-cp34-cp34m-linux_armv6l.whl#sha256=8539e2409d8466e0706c2c8022075f1e218ae4e0950f4747032fdf35f3d34d8e (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,286 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv6l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,286 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.1-cp35-cp35m-linux_armv7l.whl#sha256=b20c922d81b119eba54e72ff66c829aec476e09664cd89d654556d740bec9b12 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,287 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv7l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,287 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.1-cp34-cp34m-linux_armv6l.whl#sha256=ec65574154de7191d834235df8d3e1eaf427adb45344a1f3641a1363e11734f5 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,288 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv7l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,288 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.8.0-cp34-cp34m-linux_armv6l.whl#sha256=6030cc5a597c0317594de522e1ef9401e1ec4480d086fdcdc8fe61cedb149084 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,289 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv7l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,289 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.8-cp34-cp34m-linux_armv6l.whl#sha256=5ff0cd52bfbaf46b34fbfed5bcd5611ee602a28c3ef915ab04f80e8faff03906 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,290 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv7l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,291 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.7-cp34-cp34m-linux_armv6l.whl#sha256=116fc51605a8eb89dba9220b844cbe8006453019223950169ea6337886e06de7 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,291 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv7l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,292 Skipping link: No binaries permitted for pysam: https://archive1.piwheels.org/simple/pysam/pysam-0.7.6-cp34-cp34m-linux_armv6l.whl#sha256=eff228d61049aef6592c8e93f2629f0b1e2a080b37065f21646ff9f393020207 (from https://www.piwheels.org/simple/pysam/) 2026-09-07T10:34:36,293 Skipping link: not a file: https://www.piwheels.org/simple/pysam/ 2026-09-07T10:34:36,294 Skipping link: not a file: https://pypi.org/simple/pysam/ 2026-09-07T10:34:36,318 Given no hashes to check 1 links for project 'pysam': discarding no candidates 2026-09-07T10:34:36,336 Collecting pysam==0.24.1 2026-09-07T10:34:36,339 Created temporary directory: /tmp/pip-unpack-fnnefssh 2026-09-07T10:34:36,495 Downloading pysam-0.24.1.tar.gz (5.4 MB) 2026-09-07T10:34:39,076 Added pysam==0.24.1 from https://files.pythonhosted.org/packages/01/d0/e9271669f97ce454d1aa97f9ce0d3e84376295f352ad6c5d2c3998e38f66/pysam-0.24.1.tar.gz to build tracker '/tmp/pip-build-tracker-bv2dslqz' 2026-09-07T10:34:39,082 Created temporary directory: /tmp/pip-build-env-7nw058ko 2026-09-07T10:34:39,086 Installing build dependencies: started 2026-09-07T10:34:39,087 Running command pip subprocess to install build dependencies 2026-09-07T10:34:40,244 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-09-07T10:34:40,700 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-07T10:34:40,723 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-07T10:34:42,564 Collecting setuptools>=59.0 2026-09-07T10:34:42,565 Obtaining dependency information for setuptools>=59.0 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-09-07T10:34:42,580 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-09-07T10:34:44,779 Collecting Cython<4,>=3 2026-09-07T10:34:44,780 Obtaining dependency information for Cython<4,>=3 from https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl.metadata 2026-09-07T10:34:44,797 Using cached https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl.metadata (28 kB) 2026-09-07T10:34:45,844 Using cached https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl (11.2 MB) 2026-09-07T10:34:46,096 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-07T10:34:46,925 Using cached https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl (11.2 MB) 2026-09-07T10:34:47,287 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-07T10:34:50,004 Installing collected packages: setuptools, Cython 2026-09-07T10:34:56,080 Creating /tmp/pip-build-env-7nw058ko/overlay/local/bin 2026-09-07T10:34:56,082 changing mode of /tmp/pip-build-env-7nw058ko/overlay/local/bin/cygdb to 755 2026-09-07T10:34:56,084 changing mode of /tmp/pip-build-env-7nw058ko/overlay/local/bin/cython to 755 2026-09-07T10:34:56,086 changing mode of /tmp/pip-build-env-7nw058ko/overlay/local/bin/cythonize to 755 2026-09-07T10:34:56,112 Successfully installed Cython-3.3.0 setuptools-84.0.0 2026-09-07T10:34:56,495 Installing build dependencies: finished with status 'done' 2026-09-07T10:34:56,502 Getting requirements to build wheel: started 2026-09-07T10:34:56,503 Running command Getting requirements to build wheel 2026-09-07T10:34:57,110 # pysam: Cython 3.3.0 is available - using cythonize if necessary 2026-09-07T10:34:57,110 # pysam: htslib mode is shared 2026-09-07T10:34:57,111 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2026-09-07T10:34:57,112 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2026-09-07T10:34:57,112 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC 2026-09-07T10:34:57,113 # pysam: (sysconfig) LDFLAGS=-g -fwrapv -O2 2026-09-07T10:34:57,443 checking for gcc... arm-linux-gnueabihf-gcc 2026-09-07T10:34:57,730 checking whether the C compiler works... yes 2026-09-07T10:34:57,731 checking for C compiler default output file name... a.out 2026-09-07T10:34:57,901 checking for suffix of executables... 2026-09-07T10:34:58,108 checking whether we are cross compiling... no 2026-09-07T10:34:58,227 checking for suffix of object files... o 2026-09-07T10:34:58,306 checking whether the compiler supports GNU C... yes 2026-09-07T10:34:58,382 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2026-09-07T10:34:58,522 checking for arm-linux-gnueabihf-gcc option to enable C23 features... unsupported 2026-09-07T10:34:58,696 checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed 2026-09-07T10:34:58,701 checking for ranlib... ranlib 2026-09-07T10:34:58,710 checking for grep that handles long lines and -e... /usr/bin/grep 2026-09-07T10:34:58,787 checking for C compiler warning flags... -Wall 2026-09-07T10:34:58,982 checking for arm-linux-gnueabihf-gcc options to detect undeclared functions... none needed 2026-09-07T10:34:59,127 checking for arm-linux-gnueabihf-gcc options to ignore future-version functions... none needed 2026-09-07T10:34:59,218 checking for stdio.h... yes 2026-09-07T10:34:59,328 checking for stdlib.h... yes 2026-09-07T10:34:59,446 checking for string.h... yes 2026-09-07T10:34:59,565 checking for inttypes.h... yes 2026-09-07T10:34:59,686 checking for stdint.h... yes 2026-09-07T10:34:59,806 checking for strings.h... yes 2026-09-07T10:34:59,930 checking for sys/stat.h... yes 2026-09-07T10:35:00,054 checking for sys/types.h... yes 2026-09-07T10:35:00,189 checking for unistd.h... yes 2026-09-07T10:35:00,347 checking for sys/param.h... yes 2026-09-07T10:35:00,528 checking whether _XOPEN_SOURCE is declared... no 2026-09-07T10:35:00,650 checking whether __get_cpuid_max is declared... no 2026-09-07T10:35:00,742 checking whether __cpuid_count is declared... no 2026-09-07T10:35:00,879 checking for x86intrin.h... no 2026-09-07T10:35:00,884 checking for pkg-config... /usr/bin/pkg-config 2026-09-07T10:35:00,889 checking pkg-config is at least version 0.9.0... yes 2026-09-07T10:35:01,073 checking for arm-linux-gnueabihf-gcc option to support large files... -D_FILE_OFFSET_BITS=64 2026-09-07T10:35:01,080 checking shared library type for unknown-Linux... plain .so 2026-09-07T10:35:01,191 checking whether the linker supports versioned symbols... no 2026-09-07T10:35:01,374 checking whether the compiler accepts -fvisibility=hidden... yes 2026-09-07T10:35:01,600 checking build system type... armv7l-unknown-linux-gnueabihf 2026-09-07T10:35:01,601 checking host system type... armv7l-unknown-linux-gnueabihf 2026-09-07T10:35:01,784 checking for getpagesize... yes 2026-09-07T10:35:02,115 checking for working mmap... yes 2026-09-07T10:35:02,322 checking for gmtime_r... yes 2026-09-07T10:35:02,510 checking for fsync... yes 2026-09-07T10:35:02,696 checking for drand48... yes 2026-09-07T10:35:02,902 checking for srand48_deterministic... no 2026-09-07T10:35:03,089 checking for getauxval... yes 2026-09-07T10:35:03,296 checking for elf_aux_info... no 2026-09-07T10:35:03,498 checking for posix_memalign... yes 2026-09-07T10:35:03,662 checking whether fdatasync is declared... yes 2026-09-07T10:35:03,882 checking for fdatasync... yes 2026-09-07T10:35:04,054 checking for __attribute__((constructor))... yes 2026-09-07T10:35:04,251 checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes 2026-09-07T10:35:04,686 checking for library containing log... -lm 2026-09-07T10:35:04,790 checking for zlib.h... yes 2026-09-07T10:35:04,974 checking for inflate in -lz... yes 2026-09-07T10:35:05,158 checking for library containing recv... none required 2026-09-07T10:35:05,249 checking for bzlib.h... yes 2026-09-07T10:35:05,450 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2026-09-07T10:35:05,674 checking for lzma.h... yes 2026-09-07T10:35:05,862 checking for lzma_easy_buffer_encode in -llzma... yes 2026-09-07T10:35:05,865 checking whether htscodecs files are present... yes 2026-09-07T10:35:05,945 checking for libdeflate.h... yes 2026-09-07T10:35:06,131 checking for libdeflate_deflate_compress in -ldeflate... yes 2026-09-07T10:35:06,316 checking for curl/curl.h... yes 2026-09-07T10:35:06,685 checking for curl_easy_pause in -lcurl... yes 2026-09-07T10:35:06,899 checking for CCHmac... no 2026-09-07T10:35:07,496 checking for library containing HMAC... -lcrypto 2026-09-07T10:35:07,693 checking for library containing regcomp... none required 2026-09-07T10:35:07,767 configure: creating ./config.status 2026-09-07T10:35:08,077 config.status: creating config.mk 2026-09-07T10:35:08,117 config.status: creating htslib.pc.tmp 2026-09-07T10:35:08,162 config.status: creating config.h 2026-09-07T10:35:08,194 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2026-09-07T10:35:08,476 /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-09-07T10:35:08,477 !! 2026-09-07T10:35:08,478 ******************************************************************************** 2026-09-07T10:35:08,479 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-09-07T10:35:08,480 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-09-07T10:35:08,481 or your builds will no longer be supported. 2026-09-07T10:35:08,483 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-07T10:35:08,483 ******************************************************************************** 2026-09-07T10:35:08,485 !! 2026-09-07T10:35:08,486 corresp(dist, value, root_dir) 2026-09-07T10:35:08,748 # pysam: htslib configure options: --enable-libcurl 2026-09-07T10:35:08,748 # pysam: htslib_config HTS_CFLAGS_AVX2= 2026-09-07T10:35:08,749 # pysam: htslib_config HTS_CFLAGS_AVX512= 2026-09-07T10:35:08,750 # pysam: htslib_config HTS_CFLAGS_SSE4= 2026-09-07T10:35:08,751 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o 2026-09-07T10:35:08,751 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2026-09-07T10:35:08,752 # pysam: htslib_config PLATFORM=default 2026-09-07T10:35:08,753 # pysam: config_option: ENABLE_GCS=1 2026-09-07T10:35:08,753 # pysam: config_option: ENABLE_PLUGINS=0 2026-09-07T10:35:08,754 # pysam: config_option: ENABLE_S3=1 2026-09-07T10:35:08,754 # pysam: config_option: HAVE_COMMONCRYPTO=0 2026-09-07T10:35:08,755 # pysam: config_option: HAVE_HMAC=1 2026-09-07T10:35:08,756 # pysam: config_option: HAVE_LIBBZ2=1 2026-09-07T10:35:08,756 # pysam: config_option: HAVE_LIBCURL=1 2026-09-07T10:35:08,757 # pysam: config_option: HAVE_LIBDEFLATE=1 2026-09-07T10:35:08,758 # pysam: config_option: HAVE_LIBLZMA=1 2026-09-07T10:35:08,758 # pysam: config_option: HAVE_MMAP=1 2026-09-07T10:35:08,759 running egg_info 2026-09-07T10:35:08,762 writing pysam.egg-info/PKG-INFO 2026-09-07T10:35:08,766 writing dependency_links to pysam.egg-info/dependency_links.txt 2026-09-07T10:35:08,768 writing top-level names to pysam.egg-info/top_level.txt 2026-09-07T10:35:08,821 reading manifest file 'pysam.egg-info/SOURCES.txt' 2026-09-07T10:35:08,862 reading manifest template 'MANIFEST.in' 2026-09-07T10:35:08,864 warning: no files found matching 'KNOWN_BUGS' 2026-09-07T10:35:08,865 warning: no files found matching 'THANKS' 2026-09-07T10:35:08,875 no previously-included directories found matching 'tests' 2026-09-07T10:35:09,017 adding license file 'COPYING' 2026-09-07T10:35:09,017 adding license file 'AUTHORS' 2026-09-07T10:35:09,043 writing manifest file 'pysam.egg-info/SOURCES.txt' 2026-09-07T10:35:09,164 Getting requirements to build wheel: finished with status 'done' 2026-09-07T10:35:09,167 Created temporary directory: /tmp/pip-modern-metadata-fme0tfye 2026-09-07T10:35:09,170 Preparing metadata (pyproject.toml): started 2026-09-07T10:35:09,171 Running command Preparing metadata (pyproject.toml) 2026-09-07T10:35:09,748 # pysam: Cython 3.3.0 is available - using cythonize if necessary 2026-09-07T10:35:09,748 # pysam: htslib mode is shared 2026-09-07T10:35:09,749 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2026-09-07T10:35:09,750 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2026-09-07T10:35:09,750 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC 2026-09-07T10:35:09,751 # pysam: (sysconfig) LDFLAGS=-g -fwrapv -O2 2026-09-07T10:35:10,049 checking for gcc... arm-linux-gnueabihf-gcc 2026-09-07T10:35:10,331 checking whether the C compiler works... yes 2026-09-07T10:35:10,332 checking for C compiler default output file name... a.out 2026-09-07T10:35:10,500 checking for suffix of executables... 2026-09-07T10:35:10,736 checking whether we are cross compiling... no 2026-09-07T10:35:10,823 checking for suffix of object files... o 2026-09-07T10:35:10,900 checking whether the compiler supports GNU C... yes 2026-09-07T10:35:10,975 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2026-09-07T10:35:11,116 checking for arm-linux-gnueabihf-gcc option to enable C23 features... unsupported 2026-09-07T10:35:11,292 checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed 2026-09-07T10:35:11,296 checking for ranlib... ranlib 2026-09-07T10:35:11,304 checking for grep that handles long lines and -e... /usr/bin/grep 2026-09-07T10:35:11,383 checking for C compiler warning flags... -Wall 2026-09-07T10:35:11,601 checking for arm-linux-gnueabihf-gcc options to detect undeclared functions... none needed 2026-09-07T10:35:11,716 checking for arm-linux-gnueabihf-gcc options to ignore future-version functions... none needed 2026-09-07T10:35:11,803 checking for stdio.h... yes 2026-09-07T10:35:11,915 checking for stdlib.h... yes 2026-09-07T10:35:12,036 checking for string.h... yes 2026-09-07T10:35:12,166 checking for inttypes.h... yes 2026-09-07T10:35:12,290 checking for stdint.h... yes 2026-09-07T10:35:12,455 checking for strings.h... yes 2026-09-07T10:35:12,633 checking for sys/stat.h... yes 2026-09-07T10:35:12,770 checking for sys/types.h... yes 2026-09-07T10:35:12,924 checking for unistd.h... yes 2026-09-07T10:35:13,100 checking for sys/param.h... yes 2026-09-07T10:35:13,304 checking whether _XOPEN_SOURCE is declared... no 2026-09-07T10:35:13,406 checking whether __get_cpuid_max is declared... no 2026-09-07T10:35:13,508 checking whether __cpuid_count is declared... no 2026-09-07T10:35:13,672 checking for x86intrin.h... no 2026-09-07T10:35:13,676 checking for pkg-config... /usr/bin/pkg-config 2026-09-07T10:35:13,683 checking pkg-config is at least version 0.9.0... yes 2026-09-07T10:35:13,873 checking for arm-linux-gnueabihf-gcc option to support large files... -D_FILE_OFFSET_BITS=64 2026-09-07T10:35:13,880 checking shared library type for unknown-Linux... plain .so 2026-09-07T10:35:13,995 checking whether the linker supports versioned symbols... no 2026-09-07T10:35:14,169 checking whether the compiler accepts -fvisibility=hidden... yes 2026-09-07T10:35:14,350 checking build system type... armv7l-unknown-linux-gnueabihf 2026-09-07T10:35:14,351 checking host system type... armv7l-unknown-linux-gnueabihf 2026-09-07T10:35:14,536 checking for getpagesize... yes 2026-09-07T10:35:14,910 checking for working mmap... yes 2026-09-07T10:35:15,101 checking for gmtime_r... yes 2026-09-07T10:35:15,288 checking for fsync... yes 2026-09-07T10:35:15,478 checking for drand48... yes 2026-09-07T10:35:15,714 checking for srand48_deterministic... no 2026-09-07T10:35:15,900 checking for getauxval... yes 2026-09-07T10:35:16,106 checking for elf_aux_info... no 2026-09-07T10:35:16,325 checking for posix_memalign... yes 2026-09-07T10:35:16,542 checking whether fdatasync is declared... yes 2026-09-07T10:35:16,727 checking for fdatasync... yes 2026-09-07T10:35:16,899 checking for __attribute__((constructor))... yes 2026-09-07T10:35:17,093 checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes 2026-09-07T10:35:17,535 checking for library containing log... -lm 2026-09-07T10:35:17,640 checking for zlib.h... yes 2026-09-07T10:35:17,826 checking for inflate in -lz... yes 2026-09-07T10:35:18,019 checking for library containing recv... none required 2026-09-07T10:35:18,132 checking for bzlib.h... yes 2026-09-07T10:35:18,314 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2026-09-07T10:35:18,511 checking for lzma.h... yes 2026-09-07T10:35:18,701 checking for lzma_easy_buffer_encode in -llzma... yes 2026-09-07T10:35:18,704 checking whether htscodecs files are present... yes 2026-09-07T10:35:18,783 checking for libdeflate.h... yes 2026-09-07T10:35:19,002 checking for libdeflate_deflate_compress in -ldeflate... yes 2026-09-07T10:35:19,147 checking for curl/curl.h... yes 2026-09-07T10:35:19,505 checking for curl_easy_pause in -lcurl... yes 2026-09-07T10:35:19,747 checking for CCHmac... no 2026-09-07T10:35:20,340 checking for library containing HMAC... -lcrypto 2026-09-07T10:35:20,531 checking for library containing regcomp... none required 2026-09-07T10:35:20,604 configure: creating ./config.status 2026-09-07T10:35:20,905 config.status: creating config.mk 2026-09-07T10:35:20,946 config.status: creating htslib.pc.tmp 2026-09-07T10:35:20,991 config.status: creating config.h 2026-09-07T10:35:21,012 config.status: config.h is unchanged 2026-09-07T10:35:21,018 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2026-09-07T10:35:21,278 /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-09-07T10:35:21,278 !! 2026-09-07T10:35:21,280 ******************************************************************************** 2026-09-07T10:35:21,280 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-09-07T10:35:21,281 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-09-07T10:35:21,282 or your builds will no longer be supported. 2026-09-07T10:35:21,283 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-07T10:35:21,283 ******************************************************************************** 2026-09-07T10:35:21,285 !! 2026-09-07T10:35:21,285 corresp(dist, value, root_dir) 2026-09-07T10:35:21,532 # pysam: htslib configure options: --enable-libcurl 2026-09-07T10:35:21,532 # pysam: htslib_config HTS_CFLAGS_AVX2= 2026-09-07T10:35:21,533 # pysam: htslib_config HTS_CFLAGS_AVX512= 2026-09-07T10:35:21,534 # pysam: htslib_config HTS_CFLAGS_SSE4= 2026-09-07T10:35:21,534 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o 2026-09-07T10:35:21,535 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2026-09-07T10:35:21,535 # pysam: htslib_config PLATFORM=default 2026-09-07T10:35:21,536 # pysam: config_option: ENABLE_GCS=1 2026-09-07T10:35:21,536 # pysam: config_option: ENABLE_PLUGINS=0 2026-09-07T10:35:21,537 # pysam: config_option: ENABLE_S3=1 2026-09-07T10:35:21,537 # pysam: config_option: HAVE_COMMONCRYPTO=0 2026-09-07T10:35:21,537 # pysam: config_option: HAVE_HMAC=1 2026-09-07T10:35:21,538 # pysam: config_option: HAVE_LIBBZ2=1 2026-09-07T10:35:21,538 # pysam: config_option: HAVE_LIBCURL=1 2026-09-07T10:35:21,539 # pysam: config_option: HAVE_LIBDEFLATE=1 2026-09-07T10:35:21,540 # pysam: config_option: HAVE_LIBLZMA=1 2026-09-07T10:35:21,540 # pysam: config_option: HAVE_MMAP=1 2026-09-07T10:35:21,541 running dist_info 2026-09-07T10:35:21,546 creating /tmp/pip-modern-metadata-fme0tfye/pysam.egg-info 2026-09-07T10:35:21,547 writing /tmp/pip-modern-metadata-fme0tfye/pysam.egg-info/PKG-INFO 2026-09-07T10:35:21,550 writing dependency_links to /tmp/pip-modern-metadata-fme0tfye/pysam.egg-info/dependency_links.txt 2026-09-07T10:35:21,552 writing top-level names to /tmp/pip-modern-metadata-fme0tfye/pysam.egg-info/top_level.txt 2026-09-07T10:35:21,554 writing manifest file '/tmp/pip-modern-metadata-fme0tfye/pysam.egg-info/SOURCES.txt' 2026-09-07T10:35:21,631 reading manifest file '/tmp/pip-modern-metadata-fme0tfye/pysam.egg-info/SOURCES.txt' 2026-09-07T10:35:21,633 reading manifest template 'MANIFEST.in' 2026-09-07T10:35:21,635 warning: no files found matching 'KNOWN_BUGS' 2026-09-07T10:35:21,636 warning: no files found matching 'THANKS' 2026-09-07T10:35:21,646 no previously-included directories found matching 'tests' 2026-09-07T10:35:21,768 adding license file 'COPYING' 2026-09-07T10:35:21,768 adding license file 'AUTHORS' 2026-09-07T10:35:21,788 writing manifest file '/tmp/pip-modern-metadata-fme0tfye/pysam.egg-info/SOURCES.txt' 2026-09-07T10:35:21,789 creating '/tmp/pip-modern-metadata-fme0tfye/pysam-0.24.1.dist-info' 2026-09-07T10:35:21,935 Preparing metadata (pyproject.toml): finished with status 'done' 2026-09-07T10:35:21,940 Source in /tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d has version 0.24.1, which satisfies requirement pysam==0.24.1 from https://files.pythonhosted.org/packages/01/d0/e9271669f97ce454d1aa97f9ce0d3e84376295f352ad6c5d2c3998e38f66/pysam-0.24.1.tar.gz 2026-09-07T10:35:21,941 Removed pysam==0.24.1 from https://files.pythonhosted.org/packages/01/d0/e9271669f97ce454d1aa97f9ce0d3e84376295f352ad6c5d2c3998e38f66/pysam-0.24.1.tar.gz from build tracker '/tmp/pip-build-tracker-bv2dslqz' 2026-09-07T10:35:21,947 Created temporary directory: /tmp/pip-unpack-5u_3bgh4 2026-09-07T10:35:21,947 Building wheels for collected packages: pysam 2026-09-07T10:35:21,952 Created temporary directory: /tmp/pip-wheel-dgg3m3w6 2026-09-07T10:35:21,952 Destination directory: /tmp/pip-wheel-dgg3m3w6 2026-09-07T10:35:21,954 Building wheel for pysam (pyproject.toml): started 2026-09-07T10:35:21,956 Running command Building wheel for pysam (pyproject.toml) 2026-09-07T10:35:22,518 # pysam: Cython 3.3.0 is available - using cythonize if necessary 2026-09-07T10:35:22,518 # pysam: htslib mode is shared 2026-09-07T10:35:22,518 # pysam: HTSLIB_CONFIGURE_OPTIONS=None 2026-09-07T10:35:22,519 # pysam: (sysconfig) CC=arm-linux-gnueabihf-gcc 2026-09-07T10:35:22,520 # pysam: (sysconfig) CFLAGS=-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC 2026-09-07T10:35:22,520 # pysam: (sysconfig) LDFLAGS=-g -fwrapv -O2 2026-09-07T10:35:22,818 checking for gcc... arm-linux-gnueabihf-gcc 2026-09-07T10:35:23,097 checking whether the C compiler works... yes 2026-09-07T10:35:23,098 checking for C compiler default output file name... a.out 2026-09-07T10:35:23,265 checking for suffix of executables... 2026-09-07T10:35:23,511 checking whether we are cross compiling... no 2026-09-07T10:35:23,598 checking for suffix of object files... o 2026-09-07T10:35:23,675 checking whether the compiler supports GNU C... yes 2026-09-07T10:35:23,749 checking whether arm-linux-gnueabihf-gcc accepts -g... yes 2026-09-07T10:35:23,889 checking for arm-linux-gnueabihf-gcc option to enable C23 features... unsupported 2026-09-07T10:35:24,075 checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed 2026-09-07T10:35:24,079 checking for ranlib... ranlib 2026-09-07T10:35:24,087 checking for grep that handles long lines and -e... /usr/bin/grep 2026-09-07T10:35:24,170 checking for C compiler warning flags... -Wall 2026-09-07T10:35:24,400 checking for arm-linux-gnueabihf-gcc options to detect undeclared functions... none needed 2026-09-07T10:35:24,507 checking for arm-linux-gnueabihf-gcc options to ignore future-version functions... none needed 2026-09-07T10:35:24,595 checking for stdio.h... yes 2026-09-07T10:35:24,708 checking for stdlib.h... yes 2026-09-07T10:35:24,824 checking for string.h... yes 2026-09-07T10:35:24,944 checking for inttypes.h... yes 2026-09-07T10:35:25,065 checking for stdint.h... yes 2026-09-07T10:35:25,222 checking for strings.h... yes 2026-09-07T10:35:25,347 checking for sys/stat.h... yes 2026-09-07T10:35:25,471 checking for sys/types.h... yes 2026-09-07T10:35:25,609 checking for unistd.h... yes 2026-09-07T10:35:25,771 checking for sys/param.h... yes 2026-09-07T10:35:25,977 checking whether _XOPEN_SOURCE is declared... no 2026-09-07T10:35:26,080 checking whether __get_cpuid_max is declared... no 2026-09-07T10:35:26,187 checking whether __cpuid_count is declared... no 2026-09-07T10:35:26,346 checking for x86intrin.h... no 2026-09-07T10:35:26,351 checking for pkg-config... /usr/bin/pkg-config 2026-09-07T10:35:26,356 checking pkg-config is at least version 0.9.0... yes 2026-09-07T10:35:26,566 checking for arm-linux-gnueabihf-gcc option to support large files... -D_FILE_OFFSET_BITS=64 2026-09-07T10:35:26,574 checking shared library type for unknown-Linux... plain .so 2026-09-07T10:35:26,694 checking whether the linker supports versioned symbols... no 2026-09-07T10:35:26,897 checking whether the compiler accepts -fvisibility=hidden... yes 2026-09-07T10:35:27,108 checking build system type... armv7l-unknown-linux-gnueabihf 2026-09-07T10:35:27,109 checking host system type... armv7l-unknown-linux-gnueabihf 2026-09-07T10:35:27,327 checking for getpagesize... yes 2026-09-07T10:35:27,667 checking for working mmap... yes 2026-09-07T10:35:27,860 checking for gmtime_r... yes 2026-09-07T10:35:28,048 checking for fsync... yes 2026-09-07T10:35:28,285 checking for drand48... yes 2026-09-07T10:35:28,495 checking for srand48_deterministic... no 2026-09-07T10:35:28,681 checking for getauxval... yes 2026-09-07T10:35:28,887 checking for elf_aux_info... no 2026-09-07T10:35:29,121 checking for posix_memalign... yes 2026-09-07T10:35:29,286 checking whether fdatasync is declared... yes 2026-09-07T10:35:29,474 checking for fdatasync... yes 2026-09-07T10:35:29,646 checking for __attribute__((constructor))... yes 2026-09-07T10:35:29,851 checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes 2026-09-07T10:35:30,330 checking for library containing log... -lm 2026-09-07T10:35:30,434 checking for zlib.h... yes 2026-09-07T10:35:30,622 checking for inflate in -lz... yes 2026-09-07T10:35:30,808 checking for library containing recv... none required 2026-09-07T10:35:30,931 checking for bzlib.h... yes 2026-09-07T10:35:31,114 checking for BZ2_bzBuffToBuffCompress in -lbz2... yes 2026-09-07T10:35:31,312 checking for lzma.h... yes 2026-09-07T10:35:31,502 checking for lzma_easy_buffer_encode in -llzma... yes 2026-09-07T10:35:31,504 checking whether htscodecs files are present... yes 2026-09-07T10:35:31,583 checking for libdeflate.h... yes 2026-09-07T10:35:31,809 checking for libdeflate_deflate_compress in -ldeflate... yes 2026-09-07T10:35:31,957 checking for curl/curl.h... yes 2026-09-07T10:35:32,320 checking for curl_easy_pause in -lcurl... yes 2026-09-07T10:35:32,562 checking for CCHmac... no 2026-09-07T10:35:33,165 checking for library containing HMAC... -lcrypto 2026-09-07T10:35:33,387 checking for library containing regcomp... none required 2026-09-07T10:35:33,461 configure: creating ./config.status 2026-09-07T10:35:33,769 config.status: creating config.mk 2026-09-07T10:35:33,810 config.status: creating htslib.pc.tmp 2026-09-07T10:35:33,855 config.status: creating config.h 2026-09-07T10:35:33,874 config.status: config.h is unchanged 2026-09-07T10:35:33,880 config.status: linking htscodecs_bundled.mk to htscodecs.mk 2026-09-07T10:35:34,136 /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-09-07T10:35:34,137 !! 2026-09-07T10:35:34,139 ******************************************************************************** 2026-09-07T10:35:34,140 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-09-07T10:35:34,141 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-09-07T10:35:34,142 or your builds will no longer be supported. 2026-09-07T10:35:34,143 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-07T10:35:34,144 ******************************************************************************** 2026-09-07T10:35:34,146 !! 2026-09-07T10:35:34,147 corresp(dist, value, root_dir) 2026-09-07T10:35:34,380 # pysam: htslib configure options: --enable-libcurl 2026-09-07T10:35:34,381 # pysam: htslib_config HTS_CFLAGS_AVX2= 2026-09-07T10:35:34,381 # pysam: htslib_config HTS_CFLAGS_AVX512= 2026-09-07T10:35:34,382 # pysam: htslib_config HTS_CFLAGS_SSE4= 2026-09-07T10:35:34,383 # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o 2026-09-07T10:35:34,383 # pysam: htslib_config LIBS=-ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto 2026-09-07T10:35:34,384 # pysam: htslib_config PLATFORM=default 2026-09-07T10:35:34,384 # pysam: config_option: ENABLE_GCS=1 2026-09-07T10:35:34,385 # pysam: config_option: ENABLE_PLUGINS=0 2026-09-07T10:35:34,385 # pysam: config_option: ENABLE_S3=1 2026-09-07T10:35:34,386 # pysam: config_option: HAVE_COMMONCRYPTO=0 2026-09-07T10:35:34,386 # pysam: config_option: HAVE_HMAC=1 2026-09-07T10:35:34,387 # pysam: config_option: HAVE_LIBBZ2=1 2026-09-07T10:35:34,387 # pysam: config_option: HAVE_LIBCURL=1 2026-09-07T10:35:34,388 # pysam: config_option: HAVE_LIBDEFLATE=1 2026-09-07T10:35:34,388 # pysam: config_option: HAVE_LIBLZMA=1 2026-09-07T10:35:34,389 # pysam: config_option: HAVE_MMAP=1 2026-09-07T10:35:34,389 running bdist_wheel 2026-09-07T10:35:34,397 running build 2026-09-07T10:35:34,398 running build_py 2026-09-07T10:35:34,405 creating build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,407 copying pysam/config.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,409 copying pysam/samtools.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,411 copying pysam/Pileup.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,414 copying pysam/__init__.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,416 copying pysam/utils.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,418 copying pysam/bcftools.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,420 copying pysam/version.py -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,422 creating build/lib.linux-armv7l-cpython-311/pysam/include 2026-09-07T10:35:34,423 copying pysam/include/__init__.py -> build/lib.linux-armv7l-cpython-311/pysam/include 2026-09-07T10:35:34,464 copying pysam/libctabix.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,466 copying pysam/libcalignmentfile.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,469 copying pysam/libcvcf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,471 copying pysam/libcalignedsegment.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,474 copying pysam/version.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,476 copying pysam/libcbcftools.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,478 copying pysam/libctabixproxies.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,480 copying pysam/libchtslib.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,483 copying pysam/libcsamtools.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,485 copying pysam/libcfaidx.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,487 copying pysam/libcbcf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,490 copying pysam/libcbgzf.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,492 copying pysam/libcutils.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,495 copying pysam/libcsamfile.pyi -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,497 copying pysam/py.typed -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,499 copying pysam/libctabixproxies.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,501 copying pysam/libchtslib.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,505 copying pysam/libcfaidx.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,507 copying pysam/libcsamtools.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,509 copying pysam/libcsamfile.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,512 copying pysam/libcbcf.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,514 copying pysam/libctabix.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,516 copying pysam/libcvcf.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,518 copying pysam/libcalignedsegment.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,521 copying pysam/libcbcftools.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,523 copying pysam/libcutils.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,525 copying pysam/libcalignmentfile.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,527 copying pysam/libcbgzf.pxd -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,529 copying pysam/htslib_util.h -> build/lib.linux-armv7l-cpython-311/pysam 2026-09-07T10:35:34,531 creating build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,532 copying samtools/samtools.pysam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,535 copying samtools/bam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,537 copying samtools/samtools.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,539 copying samtools/consensus_pileup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,542 copying samtools/sam_utils.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,545 copying samtools/splaysort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,547 copying samtools/sam_opts.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,550 copying samtools/bam_consensus_tab.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,553 copying samtools/tmp_file.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,556 copying samtools/bam_plbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,558 copying samtools/stats_isize.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,560 copying samtools/sample.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,563 copying samtools/bam_lpileup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,565 copying samtools/bam_ampliconclip.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,567 copying samtools/bedidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,570 copying samtools/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/samtools 2026-09-07T10:35:34,572 creating build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,573 copying bcftools/variantkey.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,577 copying bcftools/extsort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,579 copying bcftools/gff.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,582 copying bcftools/vcfbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,585 copying bcftools/bam2bcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,588 copying bcftools/rbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,591 copying bcftools/dist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,593 copying bcftools/khash_str2str.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,596 copying bcftools/kheap.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,598 copying bcftools/bam_sample.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,601 copying bcftools/str_finder.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,604 copying bcftools/bcftools.pysam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,606 copying bcftools/utlist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,610 copying bcftools/bcftools.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,612 copying bcftools/tsv2vcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,614 copying bcftools/read_consensus.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,617 copying bcftools/abuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,619 copying bcftools/cols.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,621 copying bcftools/cigar_state.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,623 copying bcftools/convert.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,626 copying bcftools/edlib.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,628 copying bcftools/gvcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,631 copying bcftools/filter.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,633 copying bcftools/bin.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,636 copying bcftools/dbuf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,638 copying bcftools/hex.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,640 copying bcftools/hclust.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,643 copying bcftools/regidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,645 copying bcftools/smpl_ilist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,648 copying bcftools/ploidy.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,651 copying bcftools/call.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,654 copying bcftools/kmin.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,656 copying bcftools/vcmp.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,659 copying bcftools/mw.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,663 copying bcftools/prob1.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,665 copying bcftools/HMM.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,667 copying bcftools/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/bcftools 2026-09-07T10:35:34,670 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,671 copying htslib/header.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,674 copying htslib/hts_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,676 copying htslib/textutils_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,679 copying htslib/sam_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,682 copying htslib/hfile_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,685 copying htslib/bgzf_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,687 copying htslib/thread_pool_internal.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,690 copying htslib/hts_time_funcs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,693 copying htslib/bcf_sr_sort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,696 copying htslib/fuzz_settings.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,698 copying htslib/config.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib 2026-09-07T10:35:34,701 creating build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,702 copying htslib/htslib/cram.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,705 copying htslib/htslib/hfile.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,709 copying htslib/htslib/klist.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,712 copying htslib/htslib/vcf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,716 copying htslib/htslib/khash_str2int.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,718 copying htslib/htslib/hts_alloc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,721 copying htslib/htslib/faidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,724 copying htslib/htslib/thread_pool.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,726 copying htslib/htslib/vcfutils.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,729 copying htslib/htslib/hts_defs.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,732 copying htslib/htslib/bgzf.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,734 copying htslib/htslib/sam.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,738 copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,741 copying htslib/htslib/hts_log.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,744 copying htslib/htslib/kfunc.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,746 copying htslib/htslib/vcf_sweep.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,748 copying htslib/htslib/tbx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,751 copying htslib/htslib/kseq.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,754 copying htslib/htslib/kbitset.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,757 copying htslib/htslib/hts.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,760 copying htslib/htslib/hts_endian.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,763 copying htslib/htslib/hts_expr.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,766 copying htslib/htslib/kroundup.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,768 copying htslib/htslib/knetfile.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,770 copying htslib/htslib/regidx.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,773 copying htslib/htslib/hts_os.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,775 copying htslib/htslib/ksort.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,778 copying htslib/htslib/khash.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,781 copying htslib/htslib/kstring.h -> build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib 2026-09-07T10:35:34,787 running build_ext 2026-09-07T10:35:34,796 checking for arm-linux-gnueabihf-gcc option to enable C99 features... 2026-09-07T10:35:34,797 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/usr/include/python3.11 -c pysam/conftest_cstd.c -o build/temp.linux-armv7l-cpython-311/pysam/conftest_cstd.o 2026-09-07T10:35:34,909 arm-linux-gnueabihf-gcc option to enable C99 features: none needed 2026-09-07T10:35:34,909 creating htslib/config_vars.h for 'pysam.libchtslib' extension 2026-09-07T10:35:34,910 building 'libhts.a' 2026-09-07T10:35:34,940 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kfunc.o kfunc.c 2026-09-07T10:35:35,395 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kstring.o kstring.c 2026-09-07T10:35:36,403 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bcf_sr_sort.o bcf_sr_sort.c 2026-09-07T10:35:39,211 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bgzf.o bgzf.c 2026-09-07T10:35:42,550 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o errmod.o errmod.c 2026-09-07T10:35:43,253 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o faidx.o faidx.c 2026-09-07T10:35:45,361 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o header.o header.c 2026-09-07T10:35:50,843 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile.o hfile.c 2026-09-07T10:35:52,628 echo '#define HTS_VERSION_TEXT "1.24"' > version.h 2026-09-07T10:35:52,633 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts.o hts.c 2026-09-07T10:36:02,362 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_expr.o hts_expr.c 2026-09-07T10:36:04,302 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_os.o hts_os.c 2026-09-07T10:36:04,407 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o md5.o md5.c 2026-09-07T10:36:05,048 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o multipart.o multipart.c 2026-09-07T10:36:05,611 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o probaln.o probaln.c 2026-09-07T10:36:06,381 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o realn.o realn.c 2026-09-07T10:36:07,375 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o regidx.o regidx.c 2026-09-07T10:36:08,995 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o region.o region.c 2026-09-07T10:36:09,641 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam.o sam.c 2026-09-07T10:36:24,075 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam_mods.o sam_mods.c 2026-09-07T10:36:25,194 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o simd.o simd.c 2026-09-07T10:36:25,354 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o synced_bcf_reader.o synced_bcf_reader.c 2026-09-07T10:36:28,528 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf_sweep.o vcf_sweep.c 2026-09-07T10:36:28,875 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o tbx.o tbx.c 2026-09-07T10:36:30,165 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c 2026-09-07T10:36:31,144 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o thread_pool.o thread_pool.c 2026-09-07T10:36:32,102 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf.o vcf.c 2026-09-07T10:36:49,608 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcfutils.o vcfutils.c 2026-09-07T10:36:54,226 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_codecs.o cram/cram_codecs.c 2026-09-07T10:36:57,661 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_decode.o cram/cram_decode.c 2026-09-07T10:37:03,921 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_encode.o cram/cram_encode.c 2026-09-07T10:37:12,796 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_external.o cram/cram_external.c 2026-09-07T10:37:14,182 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_index.o cram/cram_index.c 2026-09-07T10:37:16,104 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_io.o cram/cram_io.c 2026-09-07T10:37:22,946 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_stats.o cram/cram_stats.c 2026-09-07T10:37:23,747 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/mFILE.o cram/mFILE.c 2026-09-07T10:37:24,435 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/open_trace_file.o cram/open_trace_file.c 2026-09-07T10:37:25,049 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/pooled_alloc.o cram/pooled_alloc.c 2026-09-07T10:37:25,269 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/string_alloc.o cram/string_alloc.c 2026-09-07T10:37:25,490 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c 2026-09-07T10:37:29,201 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c 2026-09-07T10:37:32,796 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c 2026-09-07T10:37:32,864 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c 2026-09-07T10:37:33,641 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c 2026-09-07T10:37:38,606 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx2.c 2026-09-07T10:37:38,665 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_avx512.c 2026-09-07T10:37:38,722 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_sse4.c 2026-09-07T10:37:38,781 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c 2026-09-07T10:37:38,840 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c 2026-09-07T10:37:42,042 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c 2026-09-07T10:37:44,132 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c 2026-09-07T10:37:44,588 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c 2026-09-07T10:37:47,661 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c 2026-09-07T10:37:47,930 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_libcurl.o hfile_libcurl.c 2026-09-07T10:37:50,710 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_gcs.o hfile_gcs.c 2026-09-07T10:37:51,214 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile_s3.o hfile_s3.c 2026-09-07T10:37:55,994 ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o hfile_libcurl.o hfile_gcs.o hfile_s3.o 2026-09-07T10:37:56,342 ranlib libhts.a 2026-09-07T10:38:03,028 Compiling pysam/libchtslib.pyx because it depends on /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/unistd.pxd. 2026-09-07T10:38:03,029 [1/1] Cythonizing pysam/libchtslib.pyx 2026-09-07T10:38:03,030 building 'pysam.libchtslib' extension 2026-09-07T10:38:03,032 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/htslib_util.c -o build/temp.linux-armv7l-cpython-311/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:03,342 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libchtslib.c -o build/temp.linux-armv7l-cpython-311/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:22,742 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/htslib_util.o build/temp.linux-armv7l-cpython-311/pysam/libchtslib.o htslib/kfunc.o htslib/kstring.o htslib/bcf_sr_sort.o htslib/bgzf.o htslib/errmod.o htslib/faidx.o htslib/header.o htslib/hfile.o htslib/hts.o htslib/hts_expr.o htslib/hts_os.o htslib/md5.o htslib/multipart.o htslib/probaln.o htslib/realn.o htslib/regidx.o htslib/region.o htslib/sam.o htslib/sam_mods.o htslib/simd.o htslib/synced_bcf_reader.o htslib/vcf_sweep.o htslib/tbx.o htslib/textutils.o htslib/thread_pool.o htslib/vcf.o htslib/vcfutils.o htslib/cram/cram_codecs.o htslib/cram/cram_decode.o htslib/cram/cram_encode.o htslib/cram/cram_external.o htslib/cram/cram_index.o htslib/cram/cram_io.o htslib/cram/cram_stats.o htslib/cram/mFILE.o htslib/cram/open_trace_file.o htslib/cram/pooled_alloc.o htslib/cram/string_alloc.o htslib/htscodecs/htscodecs/arith_dynamic.o htslib/htscodecs/htscodecs/fqzcomp_qual.o htslib/htscodecs/htscodecs/htscodecs.o htslib/htscodecs/htscodecs/pack.o htslib/htscodecs/htscodecs/rANS_static4x16pr.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.o htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.o htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.o htslib/htscodecs/htscodecs/rANS_static32x16pr.o htslib/htscodecs/htscodecs/rANS_static.o htslib/htscodecs/htscodecs/rle.o htslib/htscodecs/htscodecs/tokenise_name3.o htslib/htscodecs/htscodecs/utils.o htslib/hfile_libcurl.o htslib/hfile_gcs.o htslib/hfile_s3.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -o build/lib.linux-armv7l-cpython-311/pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:38:23,387 creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension 2026-09-07T10:38:23,395 building 'pysam.libcsamtools' extension 2026-09-07T10:38:23,410 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libcsamtools.c -o build/temp.linux-armv7l-cpython-311/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:25,604 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:29,759 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:30,353 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:32,977 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:33,727 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:36,082 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:36,306 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:37,556 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_checksum.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_checksum.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:39,761 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_color.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:40,050 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:44,376 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:46,808 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:47,189 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_import.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:48,362 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_index.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:48,841 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:49,463 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:54,838 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:57,218 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_md.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:58,328 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:38:58,537 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:03,054 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:03,418 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:04,218 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:05,712 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:06,945 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:07,792 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:18,442 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_split.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:20,295 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:21,104 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:23,448 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bamtk.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:23,957 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bedcov.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:25,025 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/bedidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:26,863 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:27,516 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/coverage.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:28,729 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/cram_size.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:29,818 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/cut_target.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:30,486 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/dict.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:31,548 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/faidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:32,479 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/lz4/lz4.c -o build/temp.linux-armv7l-cpython-311/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:38,629 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/padding.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:39,972 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/phase.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:43,252 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/reference.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:44,228 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/reset.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:45,358 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:45,709 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:46,257 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/sam_view.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:49,684 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/sample.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:50,494 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/samtools.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:50,701 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/stats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:56,493 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:57,151 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-armv7l-cpython-311/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:57,615 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcsamtools.o build/temp.linux-armv7l-cpython-311/samtools/amplicon_stats.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam2depth.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_addrprg.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_aux.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_cat.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_checksum.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_color.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_fastq.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_flags.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_import.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_index.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_lpileup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_markdup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_mate.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_md.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_plbuf.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_plcmd.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_quickcheck.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_reheader.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_rmdupse.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_samples.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_sort.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_split.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bam_stat.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bamshuf.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bamtk.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bedcov.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/bedidx.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/consensus_pileup.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/coverage.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/cram_size.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/cut_target.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/dict.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/faidx.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/lz4/lz4.o build/temp.linux-armv7l-cpython-311/samtools/padding.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/phase.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/reference.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/reset.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_opts.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_utils.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sam_view.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/sample.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/samtools.pysam.o build/temp.linux-armv7l-cpython-311/samtools/stats.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/stats_isize.c.pysam.o build/temp.linux-armv7l-cpython-311/samtools/tmp_file.c.pysam.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:39:58,050 building 'pysam.libcbcftools' extension 2026-09-07T10:39:58,066 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/HMM.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:39:59,230 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/abuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:02,113 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:04,882 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:08,079 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:09,855 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:12,367 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:14,515 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/bcftools.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:14,716 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/bin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:15,085 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/ccall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:15,804 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/cols.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:16,035 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:18,865 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/convert.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:25,765 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/csq.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:34,759 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/dist.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:35,056 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/edlib.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:36,012 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/em.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:36,575 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/extsort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:37,125 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/filter.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:52,688 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/gff.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:55,841 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:56,460 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/hclust.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:57,116 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/kmin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:57,554 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/main.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:40:57,897 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/mcall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:01,828 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:04,775 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:05,897 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/prob1.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:07,534 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:09,488 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/regidx.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:10,994 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/reheader.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:14,109 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:14,598 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:15,258 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/tabix.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:15,628 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:16,073 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:27,889 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:30,291 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:33,187 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:35,349 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:38,179 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:42,239 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:43,874 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:47,120 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:47,540 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:48,202 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:50,097 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:41:52,935 bcftools/vcfmerge.c.pysam.c: In function ‘maux_init’: 2026-09-07T10:41:52,936 bcftools/vcfmerge.c.pysam.c:869:34: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2026-09-07T10:41:52,936 869 | ma->gvcf = (gvcf_aux_t*) calloc(ma->n,sizeof(gvcf_aux_t)); // -Walloc-size-larger-than gives a harmless warning caused by signed integer ma->n 2026-09-07T10:41:52,937 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-07T10:41:52,938 In file included from /tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib/htslib/kstring.h:30, 2026-09-07T10:41:52,938 from /tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib/htslib/hts.h:37, 2026-09-07T10:41:52,939 from /tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib/htslib/vcf.h:39, 2026-09-07T10:41:52,939 from bcftools/vcfmerge.c.pysam.c:35: 2026-09-07T10:41:52,940 /usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here 2026-09-07T10:41:52,941 556 | extern void *calloc (size_t __nmemb, size_t __size) 2026-09-07T10:41:52,941 | ^~~~~~ 2026-09-07T10:42:03,327 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:42:13,386 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:42:13,657 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:42:14,978 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:42:17,641 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:42:19,007 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:42:20,448 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:42:25,348 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:42:27,421 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:42:27,869 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c bcftools/version.c.pysam.c -o build/temp.linux-armv7l-cpython-311/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:42:28,324 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libcbcftools.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:42:30,573 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/bcftools/HMM.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/abuf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bam_sample.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bcftools.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/bin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/ccall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/cols.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/convert.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/csq.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/dist.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/edlib.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/em.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/extsort.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/filter.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/gff.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/gvcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/hclust.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/kmin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/main.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/mcall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/mpileup.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/ploidy.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/prob1.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/read_consensus.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/regidx.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/reheader.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/smpl_ilist.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/str_finder.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/tabix.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/tsv2vcf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfannotate.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfbuf.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfcall.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfcnv.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfconcat.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfconvert.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcffilter.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfhead.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfindex.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfisec.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfmerge.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfnorm.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfplugin.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfquery.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfroh.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfsom.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfsort.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfstats.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcfview.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/vcmp.c.pysam.o build/temp.linux-armv7l-cpython-311/bcftools/version.c.pysam.o build/temp.linux-armv7l-cpython-311/pysam/libcbcftools.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:42:34,723 Compiling pysam/libcutils.pyx because it depends on /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/unistd.pxd. 2026-09-07T10:42:34,724 [1/1] Cythonizing pysam/libcutils.pyx 2026-09-07T10:42:34,724 building 'pysam.libcutils' extension 2026-09-07T10:42:34,725 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libcutils.c -o build/temp.linux-armv7l-cpython-311/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:43:01,521 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcutils.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcsamtools.cpython-311-arm-linux-gnueabihf -lcbcftools.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcutils.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:43:06,205 Compiling pysam/libcalignmentfile.pyx because it depends on /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-09-07T10:43:06,206 [1/1] Cythonizing pysam/libcalignmentfile.pyx 2026-09-07T10:43:06,206 building 'pysam.libcalignmentfile' extension 2026-09-07T10:43:06,207 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libcalignmentfile.c -o build/temp.linux-armv7l-cpython-311/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:43:58,753 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcalignmentfile.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:44:01,208 Compiling pysam/libcsamfile.pyx because it depends on /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-09-07T10:44:01,208 [1/1] Cythonizing pysam/libcsamfile.pyx 2026-09-07T10:44:01,209 building 'pysam.libcsamfile' extension 2026-09-07T10:44:01,210 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libcsamfile.c -o build/temp.linux-armv7l-cpython-311/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:44:05,642 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcsamfile.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:44:12,690 Compiling pysam/libcalignedsegment.pyx because it depends on /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-09-07T10:44:12,691 [1/1] Cythonizing pysam/libcalignedsegment.pyx 2026-09-07T10:44:12,691 building 'pysam.libcalignedsegment' extension 2026-09-07T10:44:12,693 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libcalignedsegment.c -o build/temp.linux-armv7l-cpython-311/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:45:15,043 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcalignedsegment.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:45:19,005 Compiling pysam/libctabix.pyx because it depends on /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/unistd.pxd. 2026-09-07T10:45:19,006 [1/1] Cythonizing pysam/libctabix.pyx 2026-09-07T10:45:19,007 building 'pysam.libctabix' extension 2026-09-07T10:45:19,008 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libctabix.c -o build/temp.linux-armv7l-cpython-311/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:45:46,223 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libctabix.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libctabix.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:45:49,372 Compiling pysam/libcfaidx.pyx because it depends on /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-09-07T10:45:49,372 [1/1] Cythonizing pysam/libcfaidx.pyx 2026-09-07T10:45:49,373 building 'pysam.libcfaidx' extension 2026-09-07T10:45:49,374 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libcfaidx.c -o build/temp.linux-armv7l-cpython-311/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:46:04,709 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcfaidx.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:46:12,469 Compiling pysam/libcbcf.pyx because it depends on /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-09-07T10:46:12,470 [1/1] Cythonizing pysam/libcbcf.pyx 2026-09-07T10:46:12,471 building 'pysam.libcbcf' extension 2026-09-07T10:46:12,472 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libcbcf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:47:32,576 In file included from /usr/include/python3.11/Python.h:44, 2026-09-07T10:47:32,577 from pysam/libcbcf.c:89: 2026-09-07T10:47:32,579 In function ‘Py_SIZE’, 2026-09-07T10:47:32,580 inlined from ‘PyBytes_GET_SIZE’ at /usr/include/python3.11/cpython/bytesobject.h:49:12, 2026-09-07T10:47:32,580 inlined from ‘__Pyx_PyObject_ComparePyByteArrayPyBytesBoolNe’ at pysam/libcbcf.c:116592:19, 2026-09-07T10:47:32,581 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116857:20, 2026-09-07T10:47:32,581 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:32,581 /usr/include/python3.11/object.h:142:18: warning: array subscript ‘PyVarObject[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:32,582 142 | return var_ob->ob_size; 2026-09-07T10:47:32,582 | ~~~~~~^~~~~~~~~ 2026-09-07T10:47:32,583 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:32,583 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:32,584 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:32,584 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:32,585 In function ‘__Pyx_PyObject_ComparePyByteArrayPyBytesBoolNe’, 2026-09-07T10:47:32,586 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116857:20, 2026-09-07T10:47:32,586 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:32,698 pysam/libcbcf.c:116604:22: warning: array subscript 16 is outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:32,699 116604 | if (ps1[0] != ps2[0]) goto __pyx_return_true; 2026-09-07T10:47:32,699 | ~~~^~~ 2026-09-07T10:47:32,700 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:32,701 /usr/include/python3.11/object.h:646:22: note: at offset 16 into object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:32,701 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:32,702 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:32,703 In function ‘Py_SIZE’, 2026-09-07T10:47:32,703 inlined from ‘PyByteArray_GET_SIZE’ at /usr/include/python3.11/cpython/bytearrayobject.h:34:12, 2026-09-07T10:47:32,704 inlined from ‘__Pyx_PyObject_ComparePyByteArrayPyByteArrayBoolNe’ at pysam/libcbcf.c:116625:19, 2026-09-07T10:47:32,704 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116854:20, 2026-09-07T10:47:32,705 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:32,705 /usr/include/python3.11/object.h:142:18: warning: array subscript ‘PyVarObject[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:32,706 142 | return var_ob->ob_size; 2026-09-07T10:47:32,706 | ~~~~~~^~~~~~~~~ 2026-09-07T10:47:32,707 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:32,708 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:32,709 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:32,709 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:32,709 In file included from /usr/include/python3.11/bytearrayobject.h:37, 2026-09-07T10:47:32,710 from /usr/include/python3.11/Python.h:49: 2026-09-07T10:47:32,710 In function ‘PyByteArray_AS_STRING’, 2026-09-07T10:47:32,711 inlined from ‘__Pyx_PyObject_ComparePyByteArrayPyByteArrayBoolNe’ at pysam/libcbcf.c:116627:11, 2026-09-07T10:47:32,711 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116854:20, 2026-09-07T10:47:32,712 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:32,712 /usr/include/python3.11/cpython/bytearrayobject.h:24:20: warning: array subscript ‘PyByteArrayObject[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:32,712 24 | return self->ob_start; 2026-09-07T10:47:32,713 | ~~~~^~~~~~~~~~ 2026-09-07T10:47:32,713 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:32,714 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:32,714 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:32,715 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:32,715 In function ‘PyByteArray_AS_STRING’, 2026-09-07T10:47:32,715 inlined from ‘__Pyx_PyObject_ComparePyByteArrayPyByteArrayBoolNe’ at pysam/libcbcf.c:116627:11, 2026-09-07T10:47:32,716 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116854:20, 2026-09-07T10:47:32,717 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:32,717 /usr/include/python3.11/cpython/bytearrayobject.h:24:20: warning: array subscript ‘PyByteArrayObject[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:32,718 24 | return self->ob_start; 2026-09-07T10:47:32,718 | ~~~~^~~~~~~~~~ 2026-09-07T10:47:32,719 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:32,720 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:32,720 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:32,721 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:32,721 In function ‘Py_SIZE’, 2026-09-07T10:47:32,722 inlined from ‘PyByteArray_GET_SIZE’ at /usr/include/python3.11/cpython/bytearrayobject.h:34:12, 2026-09-07T10:47:32,723 inlined from ‘__Pyx_PyObject_ComparePyBytesPyByteArrayBoolNe’ at pysam/libcbcf.c:116560:19, 2026-09-07T10:47:32,723 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116845:20, 2026-09-07T10:47:32,724 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:32,724 /usr/include/python3.11/object.h:142:18: warning: array subscript ‘PyVarObject[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:32,725 142 | return var_ob->ob_size; 2026-09-07T10:47:32,725 | ~~~~~~^~~~~~~~~ 2026-09-07T10:47:32,726 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:32,727 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:32,727 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:32,728 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:32,729 In function ‘PyByteArray_AS_STRING’, 2026-09-07T10:47:32,729 inlined from ‘__Pyx_PyObject_ComparePyBytesPyByteArrayBoolNe’ at pysam/libcbcf.c:116562:11, 2026-09-07T10:47:32,729 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116845:20, 2026-09-07T10:47:32,730 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:32,730 /usr/include/python3.11/cpython/bytearrayobject.h:24:20: warning: array subscript ‘PyByteArrayObject[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:32,731 24 | return self->ob_start; 2026-09-07T10:47:32,731 | ~~~~^~~~~~~~~~ 2026-09-07T10:47:32,731 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:32,732 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:32,732 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:32,733 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:32,733 In function ‘Py_SIZE’, 2026-09-07T10:47:32,733 inlined from ‘PyBytes_GET_SIZE’ at /usr/include/python3.11/cpython/bytesobject.h:49:12, 2026-09-07T10:47:32,734 inlined from ‘__Pyx_PyObject_ComparePyBytesPyBytesBoolNe’ at pysam/libcbcf.c:116524:19, 2026-09-07T10:47:32,734 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116842:20, 2026-09-07T10:47:32,735 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:32,735 /usr/include/python3.11/object.h:142:18: warning: array subscript ‘PyVarObject[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:32,736 142 | return var_ob->ob_size; 2026-09-07T10:47:32,736 | ~~~~~~^~~~~~~~~ 2026-09-07T10:47:32,737 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:32,737 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:32,738 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:32,739 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:32,739 In function ‘__Pyx_PyObject_ComparePyBytesPyBytesBoolNe’, 2026-09-07T10:47:32,740 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116842:20, 2026-09-07T10:47:32,741 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:32,836 pysam/libcbcf.c:116534:22: warning: array subscript 16 is outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:32,837 116534 | if (ps1[0] != ps2[0]) goto __pyx_return_true; 2026-09-07T10:47:32,837 | ~~~^~~ 2026-09-07T10:47:32,838 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:32,839 /usr/include/python3.11/object.h:646:22: note: at offset 16 into object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:32,839 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:32,840 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:32,840 In function ‘__Pyx_PyObject_CompareIntFloatBoolNe’, 2026-09-07T10:47:32,841 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116825:20, 2026-09-07T10:47:32,841 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:32,944 pysam/libcbcf.c:116708:12: warning: array subscript ‘PyFloatObject[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:32,944 116708 | double float_op2 = __Pyx_PyFloat_AS_DOUBLE(op2); 2026-09-07T10:47:32,946 | ^~~~~~~~~ 2026-09-07T10:47:32,946 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:32,946 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:32,947 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:32,947 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:32,948 In function ‘Py_SIZE’, 2026-09-07T10:47:32,948 inlined from ‘__Pyx_PyObject_CompareIntIntBoolNe’ at pysam/libcbcf.c:116762:22, 2026-09-07T10:47:32,948 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116822:20, 2026-09-07T10:47:32,949 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:32,949 /usr/include/python3.11/object.h:142:18: warning: array subscript ‘PyVarObject[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:32,950 142 | return var_ob->ob_size; 2026-09-07T10:47:32,950 | ~~~~~~^~~~~~~~~ 2026-09-07T10:47:32,951 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:32,951 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:32,951 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:32,952 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:32,952 In function ‘__Pyx_PyObject_CompareIntIntBoolNe’, 2026-09-07T10:47:32,953 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116822:20, 2026-09-07T10:47:32,954 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:33,055 pysam/libcbcf.c:116769:69: warning: array subscript 3 is outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:33,055 116769 | cmp = (Py_ssize_t) digits1[0] - (Py_ssize_t) digits2[0]; 2026-09-07T10:47:33,056 | ~~~~~~~^~~ 2026-09-07T10:47:33,057 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:33,057 /usr/include/python3.11/object.h:646:22: note: at offset 12 into object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:33,058 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:33,059 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:33,059 In function ‘Py_SIZE’, 2026-09-07T10:47:33,060 inlined from ‘__Pyx_PyObject_CompareFloatIntBoolNe’ at pysam/libcbcf.c:116660:9, 2026-09-07T10:47:33,060 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116815:20, 2026-09-07T10:47:33,061 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:33,062 /usr/include/python3.11/object.h:142:18: warning: array subscript ‘PyVarObject[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:33,062 142 | return var_ob->ob_size; 2026-09-07T10:47:33,062 | ~~~~~~^~~~~~~~~ 2026-09-07T10:47:33,063 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:33,064 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:33,064 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:33,065 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:33,065 In function ‘__Pyx_PyObject_CompareFloatIntBoolNe’, 2026-09-07T10:47:33,066 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116815:20, 2026-09-07T10:47:33,067 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:33,177 pysam/libcbcf.c:1642:94: warning: array subscript ‘PyLongObject {aka struct _longobject}[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:33,178 1642 | ((Py_SIZE(x) == 0) ? (sdigit) 0 : ((Py_SIZE(x) < 0) ? -(sdigit)__Pyx_PyLong_Digits(x)[0] : (sdigit)__Pyx_PyLong_Digits(x)[0])) 2026-09-07T10:47:33,178 | ^ 2026-09-07T10:47:33,179 pysam/libcbcf.c:116661:27: note: in expansion of macro ‘__Pyx_PyLong_CompactValue’ 2026-09-07T10:47:33,179 116661 | Py_ssize_t iop2 = __Pyx_PyLong_CompactValue(op2); 2026-09-07T10:47:33,180 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-07T10:47:33,180 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:33,181 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:33,181 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:33,181 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:33,182 In function ‘__Pyx_PyObject_CompareFloatIntBoolNe’, 2026-09-07T10:47:33,182 inlined from ‘__Pyx_PyObject_CompareBoolNe_object_object’ at pysam/libcbcf.c:116815:20, 2026-09-07T10:47:33,183 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:33,297 pysam/libcbcf.c:1642:130: warning: array subscript ‘PyLongObject {aka struct _longobject}[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:33,298 1642 | ((Py_SIZE(x) == 0) ? (sdigit) 0 : ((Py_SIZE(x) < 0) ? -(sdigit)__Pyx_PyLong_Digits(x)[0] : (sdigit)__Pyx_PyLong_Digits(x)[0])) 2026-09-07T10:47:33,299 | ^ 2026-09-07T10:47:33,299 pysam/libcbcf.c:116661:27: note: in expansion of macro ‘__Pyx_PyLong_CompactValue’ 2026-09-07T10:47:33,300 116661 | Py_ssize_t iop2 = __Pyx_PyLong_CompactValue(op2); 2026-09-07T10:47:33,301 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-07T10:47:33,301 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:33,302 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:33,303 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:33,303 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:33,304 In function ‘__Pyx_PyObject_CompareBoolNe_object_object’, 2026-09-07T10:47:33,304 inlined from ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’ at pysam/libcbcf.c:15865:17: 2026-09-07T10:47:33,405 pysam/libcbcf.c:116808:20: warning: array subscript ‘PyFloatObject[0]’ is partly outside array bounds of ‘PyObject[1]’ {aka ‘struct _object[1]’} [-Warray-bounds] 2026-09-07T10:47:33,406 116808 | double float_op2 = __Pyx_PyFloat_AS_DOUBLE(op2); 2026-09-07T10:47:33,407 | ^~~~~~~~~ 2026-09-07T10:47:33,407 /usr/include/python3.11/object.h: In function ‘__pyx_f_5pysam_7libcbcf_bcf_check_values’: 2026-09-07T10:47:33,408 /usr/include/python3.11/object.h:646:22: note: object ‘_Py_NoneStruct’ of size 8 2026-09-07T10:47:33,409 646 | PyAPI_DATA(PyObject) _Py_NoneStruct; /* Don't use this directly */ 2026-09-07T10:47:33,410 | ^~~~~~~~~~~~~~ 2026-09-07T10:47:55,454 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcbcf.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:47:58,759 Compiling pysam/libcbgzf.pyx because it depends on /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-09-07T10:47:58,760 [1/1] Cythonizing pysam/libcbgzf.pyx 2026-09-07T10:47:58,761 building 'pysam.libcbgzf' extension 2026-09-07T10:47:58,762 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libcbgzf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:48:06,929 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcbgzf.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:48:08,912 Compiling pysam/libctabixproxies.pyx because it depends on /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/Cython/Includes/libc/string.pxd. 2026-09-07T10:48:08,912 [1/1] Cythonizing pysam/libctabixproxies.pyx 2026-09-07T10:48:08,913 building 'pysam.libctabixproxies' extension 2026-09-07T10:48:08,914 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libctabixproxies.c -o build/temp.linux-armv7l-cpython-311/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:48:38,244 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libctabixproxies.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:48:38,760 warning: pysam/libcvcf.pyx:1084:27: Unreachable code 2026-09-07T10:48:42,641 Compiling pysam/libcvcf.pyx because it depends on /tmp/pip-build-env-7nw058ko/overlay/local/lib/python3.11/dist-packages/Cython/Includes/posix/types.pxd. 2026-09-07T10:48:42,642 [1/1] Cythonizing pysam/libcvcf.pyx 2026-09-07T10:48:42,642 building 'pysam.libcvcf' extension 2026-09-07T10:48:42,643 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/htslib -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/samtools/lz4 -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/bcftools -I/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -I/usr/include/python3.11 -c pysam/libcvcf.c -o build/temp.linux-armv7l-cpython-311/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement 2026-09-07T10:49:30,807 pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.constprop’: 2026-09-07T10:49:30,831 pysam/libcvcf.c:26178:15: warning: ‘__pyx_v_qual’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-07T10:49:30,832 26178 | __pyx_t_2 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 874, __pyx_L1_error) 2026-09-07T10:49:30,833 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-07T10:49:30,851 pysam/libcvcf.c:21661:10: note: ‘__pyx_v_qual’ was declared here 2026-09-07T10:49:30,852 21661 | double __pyx_v_qual; 2026-09-07T10:49:30,853 | ^~~~~~~~~~~~ 2026-09-07T10:49:48,992 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/pysam/libcvcf.o -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d/pysam -L/tmp/pip-wheel-x_p3i44e/pysam_4d1f955d23344d66a0742048a7367c0d -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -Lbuild/lib.linux-armv7l-cpython-311/pysam -L/usr/lib/arm-linux-gnueabihf -lz -ldeflate -llzma -lbz2 -lz -lm -lcurl -lcrypto -lchtslib.cpython-311-arm-linux-gnueabihf -lcutils.cpython-311-arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so -Wl,-rpath,$ORIGIN 2026-09-07T10:49:50,251 installing to build/bdist.linux-armv7l/wheel 2026-09-07T10:49:50,252 running install 2026-09-07T10:49:50,275 running install_lib 2026-09-07T10:49:50,282 creating build/bdist.linux-armv7l/wheel 2026-09-07T10:49:50,286 creating build/bdist.linux-armv7l/wheel/pysam 2026-09-07T10:49:50,287 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,289 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,363 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,365 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,368 copying build/lib.linux-armv7l-cpython-311/pysam/py.typed -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,369 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,412 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,416 copying build/lib.linux-armv7l-cpython-311/pysam/config.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,418 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,440 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,442 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,480 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,481 copying build/lib.linux-armv7l-cpython-311/pysam/samtools.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,483 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,506 copying build/lib.linux-armv7l-cpython-311/pysam/Pileup.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,508 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,510 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,512 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,514 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,517 copying build/lib.linux-armv7l-cpython-311/pysam/version.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,518 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,520 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,535 creating build/bdist.linux-armv7l/wheel/pysam/include 2026-09-07T10:49:50,538 creating build/bdist.linux-armv7l/wheel/pysam/include/samtools 2026-09-07T10:49:50,539 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/samtools.pysam.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,541 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,543 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/samtools.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,545 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/consensus_pileup.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,548 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_utils.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,550 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/splaysort.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,553 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sam_opts.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,555 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_consensus_tab.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,558 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/tmp_file.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,560 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_plbuf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,562 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/stats_isize.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,564 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/sample.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,566 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_lpileup.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,568 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bam_ampliconclip.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,570 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/bedidx.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,572 copying build/lib.linux-armv7l-cpython-311/pysam/include/samtools/config.h -> build/bdist.linux-armv7l/wheel/./pysam/include/samtools 2026-09-07T10:49:50,574 copying build/lib.linux-armv7l-cpython-311/pysam/include/__init__.py -> build/bdist.linux-armv7l/wheel/./pysam/include 2026-09-07T10:49:50,576 creating build/bdist.linux-armv7l/wheel/pysam/include/bcftools 2026-09-07T10:49:50,577 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/variantkey.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,580 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/extsort.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,582 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gff.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,585 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcfbuf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,587 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam2bcf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,590 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/rbuf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,593 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dist.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,595 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/khash_str2str.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,597 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kheap.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,599 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bam_sample.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,601 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/str_finder.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,603 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bcftools.pysam.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,605 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/utlist.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,608 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bcftools.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,610 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/tsv2vcf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,612 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/read_consensus.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,614 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/abuf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,616 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cols.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,618 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/cigar_state.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,620 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/convert.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,622 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/edlib.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,624 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/gvcf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,626 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/filter.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,628 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/bin.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,630 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/dbuf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,632 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hex.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,634 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/hclust.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,635 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/regidx.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,638 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/smpl_ilist.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,640 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/ploidy.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,642 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/call.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,644 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/kmin.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,646 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/vcmp.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,648 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/mw.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,651 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/prob1.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,653 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/HMM.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,656 copying build/lib.linux-armv7l-cpython-311/pysam/include/bcftools/config.h -> build/bdist.linux-armv7l/wheel/./pysam/include/bcftools 2026-09-07T10:49:50,658 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib 2026-09-07T10:49:50,659 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/header.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-09-07T10:49:50,662 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-09-07T10:49:50,664 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/textutils_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-09-07T10:49:50,666 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/sam_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-09-07T10:49:50,668 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hfile_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-09-07T10:49:50,670 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bgzf_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-09-07T10:49:50,672 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/thread_pool_internal.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-09-07T10:49:50,674 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/hts_time_funcs.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-09-07T10:49:50,677 creating build/bdist.linux-armv7l/wheel/pysam/include/htslib/htslib 2026-09-07T10:49:50,678 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/cram.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,681 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hfile.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,684 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/klist.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,687 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,690 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/khash_str2int.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,692 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_alloc.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,694 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/faidx.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,696 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/thread_pool.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,699 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcfutils.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,701 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_defs.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,704 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/bgzf.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,706 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/sam.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,710 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/synced_bcf_reader.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,713 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_log.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,715 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kfunc.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,717 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/vcf_sweep.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,719 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/tbx.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,721 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kseq.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,723 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kbitset.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,726 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,729 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_endian.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,731 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_expr.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,734 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kroundup.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,735 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/knetfile.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,737 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/regidx.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,740 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/hts_os.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,742 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/ksort.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,744 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/khash.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,747 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/htslib/kstring.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib/htslib 2026-09-07T10:49:50,749 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/bcf_sr_sort.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-09-07T10:49:50,752 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/fuzz_settings.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-09-07T10:49:50,754 copying build/lib.linux-armv7l-cpython-311/pysam/include/htslib/config.h -> build/bdist.linux-armv7l/wheel/./pysam/include/htslib 2026-09-07T10:49:50,756 copying build/lib.linux-armv7l-cpython-311/pysam/__init__.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,758 copying build/lib.linux-armv7l-cpython-311/pysam/libctabixproxies.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,760 copying build/lib.linux-armv7l-cpython-311/pysam/utils.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,762 copying build/lib.linux-armv7l-cpython-311/pysam/libctabix.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,764 copying build/lib.linux-armv7l-cpython-311/pysam/libchtslib.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,766 copying build/lib.linux-armv7l-cpython-311/pysam/htslib_util.h -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,768 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,807 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,876 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,935 copying build/lib.linux-armv7l-cpython-311/pysam/libcvcf.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,938 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,940 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamtools.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,942 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,951 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,973 copying build/lib.linux-armv7l-cpython-311/pysam/libcfaidx.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:50,975 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,016 copying build/lib.linux-armv7l-cpython-311/pysam/bcftools.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,019 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcftools.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,021 copying build/lib.linux-armv7l-cpython-311/pysam/libcbcf.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,024 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,026 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,028 copying build/lib.linux-armv7l-cpython-311/pysam/version.py -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,030 copying build/lib.linux-armv7l-cpython-311/pysam/libcalignmentfile.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,033 copying build/lib.linux-armv7l-cpython-311/pysam/libcutils.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,035 copying build/lib.linux-armv7l-cpython-311/pysam/libcbgzf.pxd -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,038 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.pyi -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,040 copying build/lib.linux-armv7l-cpython-311/pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./pysam 2026-09-07T10:49:51,048 running install_egg_info 2026-09-07T10:49:51,059 running egg_info 2026-09-07T10:49:51,066 writing pysam.egg-info/PKG-INFO 2026-09-07T10:49:51,070 writing dependency_links to pysam.egg-info/dependency_links.txt 2026-09-07T10:49:51,072 writing top-level names to pysam.egg-info/top_level.txt 2026-09-07T10:49:51,133 reading manifest file 'pysam.egg-info/SOURCES.txt' 2026-09-07T10:49:51,191 reading manifest template 'MANIFEST.in' 2026-09-07T10:49:51,193 warning: no files found matching 'KNOWN_BUGS' 2026-09-07T10:49:51,194 warning: no files found matching 'THANKS' 2026-09-07T10:49:51,204 no previously-included directories found matching 'tests' 2026-09-07T10:49:51,371 adding license file 'COPYING' 2026-09-07T10:49:51,372 adding license file 'AUTHORS' 2026-09-07T10:49:51,410 writing manifest file 'pysam.egg-info/SOURCES.txt' 2026-09-07T10:49:51,413 Copying pysam.egg-info to build/bdist.linux-armv7l/wheel/./pysam-0.24.1-py3.11.egg-info 2026-09-07T10:49:51,423 running install_scripts 2026-09-07T10:49:51,478 creating build/bdist.linux-armv7l/wheel/pysam-0.24.1.dist-info/WHEEL 2026-09-07T10:49:51,482 creating '/tmp/pip-wheel-dgg3m3w6/.tmp-6ud9qh9u/pysam-0.24.1-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-09-07T10:49:51,486 adding 'pysam/Pileup.py' 2026-09-07T10:49:51,488 adding 'pysam/__init__.py' 2026-09-07T10:49:51,490 adding 'pysam/bcftools.py' 2026-09-07T10:49:51,491 adding 'pysam/config.py' 2026-09-07T10:49:51,493 adding 'pysam/htslib_util.h' 2026-09-07T10:49:52,074 adding 'pysam/libcalignedsegment.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:52,094 adding 'pysam/libcalignedsegment.pxd' 2026-09-07T10:49:52,096 adding 'pysam/libcalignedsegment.pyi' 2026-09-07T10:49:52,579 adding 'pysam/libcalignmentfile.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:52,596 adding 'pysam/libcalignmentfile.pxd' 2026-09-07T10:49:52,598 adding 'pysam/libcalignmentfile.pyi' 2026-09-07T10:49:53,385 adding 'pysam/libcbcf.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:53,415 adding 'pysam/libcbcf.pxd' 2026-09-07T10:49:53,417 adding 'pysam/libcbcf.pyi' 2026-09-07T10:49:54,359 adding 'pysam/libcbcftools.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:54,386 adding 'pysam/libcbcftools.pxd' 2026-09-07T10:49:54,388 adding 'pysam/libcbcftools.pyi' 2026-09-07T10:49:54,485 adding 'pysam/libcbgzf.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:54,489 adding 'pysam/libcbgzf.pxd' 2026-09-07T10:49:54,491 adding 'pysam/libcbgzf.pyi' 2026-09-07T10:49:54,669 adding 'pysam/libcfaidx.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:54,675 adding 'pysam/libcfaidx.pxd' 2026-09-07T10:49:54,677 adding 'pysam/libcfaidx.pyi' 2026-09-07T10:49:55,832 adding 'pysam/libchtslib.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:55,871 adding 'pysam/libchtslib.pxd' 2026-09-07T10:49:55,872 adding 'pysam/libchtslib.pyi' 2026-09-07T10:49:55,925 adding 'pysam/libcsamfile.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:55,928 adding 'pysam/libcsamfile.pxd' 2026-09-07T10:49:55,930 adding 'pysam/libcsamfile.pyi' 2026-09-07T10:49:56,593 adding 'pysam/libcsamtools.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:56,612 adding 'pysam/libcsamtools.pxd' 2026-09-07T10:49:56,613 adding 'pysam/libcsamtools.pyi' 2026-09-07T10:49:56,868 adding 'pysam/libctabix.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:56,877 adding 'pysam/libctabix.pxd' 2026-09-07T10:49:56,879 adding 'pysam/libctabix.pyi' 2026-09-07T10:49:57,177 adding 'pysam/libctabixproxies.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:57,188 adding 'pysam/libctabixproxies.pxd' 2026-09-07T10:49:57,189 adding 'pysam/libctabixproxies.pyi' 2026-09-07T10:49:57,470 adding 'pysam/libcutils.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:57,479 adding 'pysam/libcutils.pxd' 2026-09-07T10:49:57,480 adding 'pysam/libcutils.pyi' 2026-09-07T10:49:57,996 adding 'pysam/libcvcf.cpython-311-arm-linux-gnueabihf.so' 2026-09-07T10:49:58,013 adding 'pysam/libcvcf.pxd' 2026-09-07T10:49:58,014 adding 'pysam/libcvcf.pyi' 2026-09-07T10:49:58,016 adding 'pysam/py.typed' 2026-09-07T10:49:58,017 adding 'pysam/samtools.py' 2026-09-07T10:49:58,019 adding 'pysam/utils.py' 2026-09-07T10:49:58,020 adding 'pysam/version.py' 2026-09-07T10:49:58,022 adding 'pysam/version.pyi' 2026-09-07T10:49:58,023 adding 'pysam/include/__init__.py' 2026-09-07T10:49:58,026 adding 'pysam/include/bcftools/HMM.h' 2026-09-07T10:49:58,028 adding 'pysam/include/bcftools/abuf.h' 2026-09-07T10:49:58,030 adding 'pysam/include/bcftools/bam2bcf.h' 2026-09-07T10:49:58,031 adding 'pysam/include/bcftools/bam_sample.h' 2026-09-07T10:49:58,033 adding 'pysam/include/bcftools/bcftools.h' 2026-09-07T10:49:58,035 adding 'pysam/include/bcftools/bcftools.pysam.h' 2026-09-07T10:49:58,036 adding 'pysam/include/bcftools/bin.h' 2026-09-07T10:49:58,038 adding 'pysam/include/bcftools/call.h' 2026-09-07T10:49:58,039 adding 'pysam/include/bcftools/cigar_state.h' 2026-09-07T10:49:58,041 adding 'pysam/include/bcftools/cols.h' 2026-09-07T10:49:58,043 adding 'pysam/include/bcftools/config.h' 2026-09-07T10:49:58,044 adding 'pysam/include/bcftools/convert.h' 2026-09-07T10:49:58,045 adding 'pysam/include/bcftools/dbuf.h' 2026-09-07T10:49:58,047 adding 'pysam/include/bcftools/dist.h' 2026-09-07T10:49:58,049 adding 'pysam/include/bcftools/edlib.h' 2026-09-07T10:49:58,050 adding 'pysam/include/bcftools/extsort.h' 2026-09-07T10:49:58,052 adding 'pysam/include/bcftools/filter.h' 2026-09-07T10:49:58,054 adding 'pysam/include/bcftools/gff.h' 2026-09-07T10:49:58,055 adding 'pysam/include/bcftools/gvcf.h' 2026-09-07T10:49:58,057 adding 'pysam/include/bcftools/hclust.h' 2026-09-07T10:49:58,058 adding 'pysam/include/bcftools/hex.h' 2026-09-07T10:49:58,060 adding 'pysam/include/bcftools/khash_str2str.h' 2026-09-07T10:49:58,061 adding 'pysam/include/bcftools/kheap.h' 2026-09-07T10:49:58,063 adding 'pysam/include/bcftools/kmin.h' 2026-09-07T10:49:58,065 adding 'pysam/include/bcftools/mw.h' 2026-09-07T10:49:58,067 adding 'pysam/include/bcftools/ploidy.h' 2026-09-07T10:49:58,069 adding 'pysam/include/bcftools/prob1.h' 2026-09-07T10:49:58,071 adding 'pysam/include/bcftools/rbuf.h' 2026-09-07T10:49:58,072 adding 'pysam/include/bcftools/read_consensus.h' 2026-09-07T10:49:58,074 adding 'pysam/include/bcftools/regidx.h' 2026-09-07T10:49:58,075 adding 'pysam/include/bcftools/smpl_ilist.h' 2026-09-07T10:49:58,076 adding 'pysam/include/bcftools/str_finder.h' 2026-09-07T10:49:58,078 adding 'pysam/include/bcftools/tsv2vcf.h' 2026-09-07T10:49:58,081 adding 'pysam/include/bcftools/utlist.h' 2026-09-07T10:49:58,084 adding 'pysam/include/bcftools/variantkey.h' 2026-09-07T10:49:58,086 adding 'pysam/include/bcftools/vcfbuf.h' 2026-09-07T10:49:58,087 adding 'pysam/include/bcftools/vcmp.h' 2026-09-07T10:49:58,089 adding 'pysam/include/htslib/bcf_sr_sort.h' 2026-09-07T10:49:58,091 adding 'pysam/include/htslib/bgzf_internal.h' 2026-09-07T10:49:58,093 adding 'pysam/include/htslib/config.h' 2026-09-07T10:49:58,094 adding 'pysam/include/htslib/fuzz_settings.h' 2026-09-07T10:49:58,096 adding 'pysam/include/htslib/header.h' 2026-09-07T10:49:58,098 adding 'pysam/include/htslib/hfile_internal.h' 2026-09-07T10:49:58,099 adding 'pysam/include/htslib/hts_internal.h' 2026-09-07T10:49:58,101 adding 'pysam/include/htslib/hts_time_funcs.h' 2026-09-07T10:49:58,103 adding 'pysam/include/htslib/sam_internal.h' 2026-09-07T10:49:58,105 adding 'pysam/include/htslib/textutils_internal.h' 2026-09-07T10:49:58,107 adding 'pysam/include/htslib/thread_pool_internal.h' 2026-09-07T10:49:58,111 adding 'pysam/include/htslib/htslib/bgzf.h' 2026-09-07T10:49:58,115 adding 'pysam/include/htslib/htslib/cram.h' 2026-09-07T10:49:58,117 adding 'pysam/include/htslib/htslib/faidx.h' 2026-09-07T10:49:58,119 adding 'pysam/include/htslib/htslib/hfile.h' 2026-09-07T10:49:58,127 adding 'pysam/include/htslib/htslib/hts.h' 2026-09-07T10:49:58,130 adding 'pysam/include/htslib/htslib/hts_alloc.h' 2026-09-07T10:49:58,131 adding 'pysam/include/htslib/htslib/hts_defs.h' 2026-09-07T10:49:58,133 adding 'pysam/include/htslib/htslib/hts_endian.h' 2026-09-07T10:49:58,135 adding 'pysam/include/htslib/htslib/hts_expr.h' 2026-09-07T10:49:58,136 adding 'pysam/include/htslib/htslib/hts_log.h' 2026-09-07T10:49:58,138 adding 'pysam/include/htslib/htslib/hts_os.h' 2026-09-07T10:49:58,139 adding 'pysam/include/htslib/htslib/kbitset.h' 2026-09-07T10:49:58,141 adding 'pysam/include/htslib/htslib/kfunc.h' 2026-09-07T10:49:58,144 adding 'pysam/include/htslib/htslib/khash.h' 2026-09-07T10:49:58,146 adding 'pysam/include/htslib/htslib/khash_str2int.h' 2026-09-07T10:49:58,148 adding 'pysam/include/htslib/htslib/klist.h' 2026-09-07T10:49:58,150 adding 'pysam/include/htslib/htslib/knetfile.h' 2026-09-07T10:49:58,152 adding 'pysam/include/htslib/htslib/kroundup.h' 2026-09-07T10:49:58,154 adding 'pysam/include/htslib/htslib/kseq.h' 2026-09-07T10:49:58,156 adding 'pysam/include/htslib/htslib/ksort.h' 2026-09-07T10:49:58,158 adding 'pysam/include/htslib/htslib/kstring.h' 2026-09-07T10:49:58,160 adding 'pysam/include/htslib/htslib/regidx.h' 2026-09-07T10:49:58,172 adding 'pysam/include/htslib/htslib/sam.h' 2026-09-07T10:49:58,175 adding 'pysam/include/htslib/htslib/synced_bcf_reader.h' 2026-09-07T10:49:58,177 adding 'pysam/include/htslib/htslib/tbx.h' 2026-09-07T10:49:58,179 adding 'pysam/include/htslib/htslib/thread_pool.h' 2026-09-07T10:49:58,189 adding 'pysam/include/htslib/htslib/vcf.h' 2026-09-07T10:49:58,191 adding 'pysam/include/htslib/htslib/vcf_sweep.h' 2026-09-07T10:49:58,193 adding 'pysam/include/htslib/htslib/vcfutils.h' 2026-09-07T10:49:58,195 adding 'pysam/include/samtools/bam.h' 2026-09-07T10:49:58,197 adding 'pysam/include/samtools/bam_ampliconclip.h' 2026-09-07T10:49:58,200 adding 'pysam/include/samtools/bam_consensus_tab.h' 2026-09-07T10:49:58,201 adding 'pysam/include/samtools/bam_lpileup.h' 2026-09-07T10:49:58,202 adding 'pysam/include/samtools/bam_plbuf.h' 2026-09-07T10:49:58,204 adding 'pysam/include/samtools/bedidx.h' 2026-09-07T10:49:58,205 adding 'pysam/include/samtools/config.h' 2026-09-07T10:49:58,206 adding 'pysam/include/samtools/consensus_pileup.h' 2026-09-07T10:49:58,208 adding 'pysam/include/samtools/sam_opts.h' 2026-09-07T10:49:58,209 adding 'pysam/include/samtools/sam_utils.h' 2026-09-07T10:49:58,210 adding 'pysam/include/samtools/sample.h' 2026-09-07T10:49:58,212 adding 'pysam/include/samtools/samtools.h' 2026-09-07T10:49:58,213 adding 'pysam/include/samtools/samtools.pysam.h' 2026-09-07T10:49:58,215 adding 'pysam/include/samtools/splaysort.h' 2026-09-07T10:49:58,216 adding 'pysam/include/samtools/stats_isize.h' 2026-09-07T10:49:58,218 adding 'pysam/include/samtools/tmp_file.h' 2026-09-07T10:49:58,221 adding 'pysam-0.24.1.dist-info/licenses/AUTHORS' 2026-09-07T10:49:58,222 adding 'pysam-0.24.1.dist-info/licenses/COPYING' 2026-09-07T10:49:58,223 adding 'pysam-0.24.1.dist-info/METADATA' 2026-09-07T10:49:58,224 adding 'pysam-0.24.1.dist-info/WHEEL' 2026-09-07T10:49:58,225 adding 'pysam-0.24.1.dist-info/top_level.txt' 2026-09-07T10:49:58,228 adding 'pysam-0.24.1.dist-info/RECORD' 2026-09-07T10:49:58,379 removing build/bdist.linux-armv7l/wheel 2026-09-07T10:50:00,540 Building wheel for pysam (pyproject.toml): finished with status 'done' 2026-09-07T10:50:00,806 Created wheel for pysam: filename=pysam-0.24.1-cp311-cp311-linux_armv7l.whl size=13084952 sha256=7f86760d57c6f02011830a5065ec625d8b521149cc5ae999fced82c870a906a7 2026-09-07T10:50:00,807 Stored in directory: /tmp/pip-ephem-wheel-cache-vta4eo22/wheels/50/df/29/53a98ea86c9c4caab0a17fe4f937fb0ba39377a68365d37faa 2026-09-07T10:50:00,827 Successfully built pysam 2026-09-07T10:50:01,140 Removed build tracker: '/tmp/pip-build-tracker-bv2dslqz'