2026-09-09T18:47:05,456 Created temporary directory: /tmp/pip-ephem-wheel-cache-ujamq4ds 2026-09-09T18:47:05,458 Created temporary directory: /tmp/pip-build-tracker-0qngpowc 2026-09-09T18:47:05,458 Initialized build tracking at /tmp/pip-build-tracker-0qngpowc 2026-09-09T18:47:05,459 Created build tracker: /tmp/pip-build-tracker-0qngpowc 2026-09-09T18:47:05,459 Entered build tracker: /tmp/pip-build-tracker-0qngpowc 2026-09-09T18:47:05,460 Created temporary directory: /tmp/pip-wheel-p6dhieyq 2026-09-09T18:47:05,463 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-09T18:47:05,465 Created temporary directory: /tmp/pip-ephem-wheel-cache-86c5tqcm 2026-09-09T18:47:05,487 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-09T18:47:05,491 2 location(s) to search for versions of fairscape-models: 2026-09-09T18:47:05,491 * https://pypi.org/simple/fairscape-models/ 2026-09-09T18:47:05,491 * https://www.piwheels.org/simple/fairscape-models/ 2026-09-09T18:47:05,492 Fetching project page and analyzing links: https://pypi.org/simple/fairscape-models/ 2026-09-09T18:47:05,492 Getting page https://pypi.org/simple/fairscape-models/ 2026-09-09T18:47:05,494 Found index url https://pypi.org/simple 2026-09-09T18:47:05,728 Fetched page https://pypi.org/simple/fairscape-models/ as application/vnd.pypi.simple.v1+json 2026-09-09T18:47:05,744 Found link https://files.pythonhosted.org/packages/c7/25/b0a684923f1dc966a8f38d7b87d995b611370b7a4517be988f3b99c76737/fairscape-models-0.1.0.tar.gz (from https://pypi.org/simple/fairscape-models/) (requires-python:>=3.6), version: 0.1.0 2026-09-09T18:47:05,744 Skipping link: No binaries permitted for fairscape-models: https://files.pythonhosted.org/packages/01/44/b3ae3b73fca2e41e4fcb9e69576177f2a38a7f41e3f005d26b4107d6ab0b/fairscape_models-0.1.0-py3-none-any.whl (from https://pypi.org/simple/fairscape-models/) (requires-python:>=3.6) 2026-09-09T18:47:05,746 Found link https://files.pythonhosted.org/packages/cf/d9/d2e165d67e4f04868755cd7383d11909ea211514f3aa87264046d119b937/fairscape-models-0.1.2.tar.gz (from https://pypi.org/simple/fairscape-models/) (requires-python:>=3.6), version: 0.1.2 2026-09-09T18:47:05,746 Skipping link: No binaries permitted for fairscape-models: https://files.pythonhosted.org/packages/cb/0f/86c32178f315f2ce3cd0eeac26db9a723a87a6916287d75bfc65fb35f4f9/fairscape_models-0.1.2-py3-none-any.whl (from https://pypi.org/simple/fairscape-models/) (requires-python:>=3.6) 2026-09-09T18:47:05,747 Skipping link: No binaries permitted for fairscape-models: https://files.pythonhosted.org/packages/35/7d/91cce8fbd310eed404df04d8aeee265299585884c260777e7fa1c7a8f06a/fairscape_models-1.0.1-py3-none-any.whl (from https://pypi.org/simple/fairscape-models/) (requires-python:>=3.8) 2026-09-09T18:47:05,748 Found link https://files.pythonhosted.org/packages/1a/cf/17a8765e941c961ce4c9be53b4a8fd9396874aee584dc441c73e223d6984/fairscape_models-1.0.1.tar.gz (from https://pypi.org/simple/fairscape-models/) (requires-python:>=3.8), version: 1.0.1 2026-09-09T18:47:05,749 Skipping link: No binaries permitted for fairscape-models: 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https://pypi.org/simple/fairscape-models/) (requires-python:>=3.8), version: 1.0.3 2026-09-09T18:47:05,753 Skipping link: No binaries permitted for fairscape-models: https://files.pythonhosted.org/packages/fd/bb/fb5d4ce8cbfc90243140b8c99f078af3f6f1a660731513a67eb443830622/fairscape_models-1.0.4-py3-none-any.whl (from https://pypi.org/simple/fairscape-models/) (requires-python:>=3.8) 2026-09-09T18:47:05,754 Found link https://files.pythonhosted.org/packages/c9/af/0874fbe81394871414bd5c596e4f8beb92e4d5c34facbcc0cefd399cb1c3/fairscape_models-1.0.4.tar.gz (from https://pypi.org/simple/fairscape-models/) (requires-python:>=3.8), version: 1.0.4 2026-09-09T18:47:05,754 Skipping link: No binaries permitted for fairscape-models: https://files.pythonhosted.org/packages/59/7f/e6b41f2f3a1f764b4285c70ecc5e0dcd456ec8bf1d80d6f98a807025aa81/fairscape_models-1.0.5-py3-none-any.whl (from https://pypi.org/simple/fairscape-models/) (requires-python:>=3.8) 2026-09-09T18:47:05,755 Found link 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fairscape-models: https://archive1.piwheels.org/simple/fairscape-models/fairscape_models-1.0.4-py3-none-any.whl#sha256=b9497e8591642cceba8f7053037294b1dd22d80666e795cf31fc7801e88f557a (from https://www.piwheels.org/simple/fairscape-models/) (requires-python:>=3.8) 2026-09-09T18:47:06,032 Skipping link: No binaries permitted for fairscape-models: https://archive1.piwheels.org/simple/fairscape-models/fairscape_models-1.0.2-py3-none-any.whl#sha256=0d1ddead75068fa8de00a58989c0da1fd9a2ca9fc60dc5e4a8772ffb404cfedd (from https://www.piwheels.org/simple/fairscape-models/) (requires-python:>=3.8) 2026-09-09T18:47:06,033 Skipping link: No binaries permitted for fairscape-models: https://archive1.piwheels.org/simple/fairscape-models/fairscape_models-0.1.2-py3-none-any.whl#sha256=3fb2e9ee9be7d95fec3254e8412ef90a94d8d7adeae1226d6b11482651d12670 (from https://www.piwheels.org/simple/fairscape-models/) (requires-python:>=3.6) 2026-09-09T18:47:06,033 Skipping link: No binaries permitted for fairscape-models: https://archive1.piwheels.org/simple/fairscape-models/fairscape_models-0.1.0-py3-none-any.whl#sha256=8355af32690f0ca28c12c6c2e295f3d80a9e0bacb4850b0b0f2ce1608517e2a3 (from https://www.piwheels.org/simple/fairscape-models/) (requires-python:>=3.6) 2026-09-09T18:47:06,034 Skipping link: not a file: https://www.piwheels.org/simple/fairscape-models/ 2026-09-09T18:47:06,034 Skipping link: not a file: https://pypi.org/simple/fairscape-models/ 2026-09-09T18:47:06,058 Given no hashes to check 1 links for project 'fairscape-models': discarding no candidates 2026-09-09T18:47:06,076 Collecting fairscape-models==1.2.4 2026-09-09T18:47:06,078 Created temporary directory: /tmp/pip-unpack-w9u4tw9d 2026-09-09T18:47:06,230 Downloading fairscape_models-1.2.4.tar.gz (815 kB) 2026-09-09T18:47:06,980 Added fairscape-models==1.2.4 from https://files.pythonhosted.org/packages/c3/ab/99495c1f5c2786fb5bc9386bbe78541e0c94ac57b31a1d9ce09ae277dd44/fairscape_models-1.2.4.tar.gz to build tracker '/tmp/pip-build-tracker-0qngpowc' 2026-09-09T18:47:06,986 Created temporary directory: /tmp/pip-build-env-aqdozx0y 2026-09-09T18:47:06,990 Installing build dependencies: started 2026-09-09T18:47:06,991 Running command pip subprocess to install build dependencies 2026-09-09T18:47:08,116 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-09-09T18:47:08,534 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-09T18:47:08,557 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-09T18:47:10,325 Collecting setuptools>=80.0.0 2026-09-09T18:47:10,326 Obtaining dependency information for setuptools>=80.0.0 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-09-09T18:47:10,340 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-09-09T18:47:10,574 Collecting wheel 2026-09-09T18:47:10,576 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-09-09T18:47:10,588 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-09-09T18:47:10,774 Collecting packaging>=24.0 2026-09-09T18:47:10,775 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-09-09T18:47:10,789 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-09-09T18:47:10,979 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-09-09T18:47:11,001 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-09T18:47:11,079 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-09T18:47:11,107 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-09-09T18:47:11,135 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-09T18:47:11,213 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-09T18:47:13,979 Installing collected packages: setuptools, packaging, wheel 2026-09-09T18:47:16,681 Creating /tmp/pip-build-env-aqdozx0y/overlay/local/bin 2026-09-09T18:47:16,683 changing mode of /tmp/pip-build-env-aqdozx0y/overlay/local/bin/wheel to 755 2026-09-09T18:47:16,704 Successfully installed packaging-26.3 setuptools-84.0.0 wheel-0.48.0 2026-09-09T18:47:16,989 Installing build dependencies: finished with status 'done' 2026-09-09T18:47:16,995 Getting requirements to build wheel: started 2026-09-09T18:47:16,996 Running command Getting requirements to build wheel 2026-09-09T18:47:17,617 /tmp/pip-build-env-aqdozx0y/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-09-09T18:47:17,617 corresp(dist, value, root_dir) 2026-09-09T18:47:17,704 running egg_info 2026-09-09T18:47:17,710 writing fairscape_models.egg-info/PKG-INFO 2026-09-09T18:47:17,716 writing dependency_links to fairscape_models.egg-info/dependency_links.txt 2026-09-09T18:47:17,720 writing requirements to fairscape_models.egg-info/requires.txt 2026-09-09T18:47:17,722 writing top-level names to fairscape_models.egg-info/top_level.txt 2026-09-09T18:47:17,750 reading manifest file 'fairscape_models.egg-info/SOURCES.txt' 2026-09-09T18:47:17,774 adding license file 'LICENSE' 2026-09-09T18:47:17,783 writing manifest file 'fairscape_models.egg-info/SOURCES.txt' 2026-09-09T18:47:17,882 Getting requirements to build wheel: finished with status 'done' 2026-09-09T18:47:17,886 Created temporary directory: /tmp/pip-modern-metadata-wnettw4d 2026-09-09T18:47:17,888 Preparing metadata (pyproject.toml): started 2026-09-09T18:47:17,890 Running command Preparing metadata (pyproject.toml) 2026-09-09T18:47:18,486 /tmp/pip-build-env-aqdozx0y/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-09-09T18:47:18,486 corresp(dist, value, root_dir) 2026-09-09T18:47:18,569 running dist_info 2026-09-09T18:47:18,580 creating /tmp/pip-modern-metadata-wnettw4d/fairscape_models.egg-info 2026-09-09T18:47:18,581 writing /tmp/pip-modern-metadata-wnettw4d/fairscape_models.egg-info/PKG-INFO 2026-09-09T18:47:18,588 writing dependency_links to /tmp/pip-modern-metadata-wnettw4d/fairscape_models.egg-info/dependency_links.txt 2026-09-09T18:47:18,592 writing requirements to /tmp/pip-modern-metadata-wnettw4d/fairscape_models.egg-info/requires.txt 2026-09-09T18:47:18,593 writing top-level names to /tmp/pip-modern-metadata-wnettw4d/fairscape_models.egg-info/top_level.txt 2026-09-09T18:47:18,595 writing manifest file '/tmp/pip-modern-metadata-wnettw4d/fairscape_models.egg-info/SOURCES.txt' 2026-09-09T18:47:18,620 reading manifest file '/tmp/pip-modern-metadata-wnettw4d/fairscape_models.egg-info/SOURCES.txt' 2026-09-09T18:47:18,622 adding license file 'LICENSE' 2026-09-09T18:47:18,626 writing manifest file '/tmp/pip-modern-metadata-wnettw4d/fairscape_models.egg-info/SOURCES.txt' 2026-09-09T18:47:18,628 creating '/tmp/pip-modern-metadata-wnettw4d/fairscape_models-1.2.4.dist-info' 2026-09-09T18:47:18,752 Preparing metadata (pyproject.toml): finished with status 'done' 2026-09-09T18:47:18,757 Source in /tmp/pip-wheel-p6dhieyq/fairscape-models_047591c698da423ab8312ffc406726a5 has version 1.2.4, which satisfies requirement fairscape-models==1.2.4 from https://files.pythonhosted.org/packages/c3/ab/99495c1f5c2786fb5bc9386bbe78541e0c94ac57b31a1d9ce09ae277dd44/fairscape_models-1.2.4.tar.gz 2026-09-09T18:47:18,759 Removed fairscape-models==1.2.4 from https://files.pythonhosted.org/packages/c3/ab/99495c1f5c2786fb5bc9386bbe78541e0c94ac57b31a1d9ce09ae277dd44/fairscape_models-1.2.4.tar.gz from build tracker '/tmp/pip-build-tracker-0qngpowc' 2026-09-09T18:47:18,764 Created temporary directory: /tmp/pip-unpack-qxqcf1y8 2026-09-09T18:47:18,765 Building wheels for collected packages: fairscape-models 2026-09-09T18:47:18,770 Created temporary directory: /tmp/pip-wheel-6qct_nwa 2026-09-09T18:47:18,771 Destination directory: /tmp/pip-wheel-6qct_nwa 2026-09-09T18:47:18,773 Building wheel for fairscape-models (pyproject.toml): started 2026-09-09T18:47:18,774 Running command Building wheel for fairscape-models (pyproject.toml) 2026-09-09T18:47:19,337 /tmp/pip-build-env-aqdozx0y/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-09-09T18:47:19,338 corresp(dist, value, root_dir) 2026-09-09T18:47:19,408 running bdist_wheel 2026-09-09T18:47:19,426 running build 2026-09-09T18:47:19,426 running build_py 2026-09-09T18:47:19,433 creating build/lib/fairscape_models 2026-09-09T18:47:19,435 copying fairscape_models/patient.py -> build/lib/fairscape_models 2026-09-09T18:47:19,436 copying fairscape_models/annotated_computation.py -> build/lib/fairscape_models 2026-09-09T18:47:19,438 copying fairscape_models/software.py -> build/lib/fairscape_models 2026-09-09T18:47:19,440 copying fairscape_models/sample.py -> build/lib/fairscape_models 2026-09-09T18:47:19,442 copying fairscape_models/activity.py -> build/lib/fairscape_models 2026-09-09T18:47:19,443 copying fairscape_models/article.py -> build/lib/fairscape_models 2026-09-09T18:47:19,445 copying fairscape_models/digital_object.py -> build/lib/fairscape_models 2026-09-09T18:47:19,447 copying fairscape_models/medical_condition.py -> build/lib/fairscape_models 2026-09-09T18:47:19,448 copying fairscape_models/claim.py -> build/lib/fairscape_models 2026-09-09T18:47:19,450 copying fairscape_models/mlmodel.py -> build/lib/fairscape_models 2026-09-09T18:47:19,451 copying fairscape_models/rocrate.py -> build/lib/fairscape_models 2026-09-09T18:47:19,454 copying fairscape_models/annotated_evidence_graph.py -> build/lib/fairscape_models 2026-09-09T18:47:19,456 copying fairscape_models/experiment.py -> build/lib/fairscape_models 2026-09-09T18:47:19,458 copying fairscape_models/__init__.py -> build/lib/fairscape_models 2026-09-09T18:47:19,459 copying fairscape_models/fairscape_base.py -> build/lib/fairscape_models 2026-09-09T18:47:19,461 copying fairscape_models/container.py -> build/lib/fairscape_models 2026-09-09T18:47:19,463 copying fairscape_models/defined_term.py -> build/lib/fairscape_models 2026-09-09T18:47:19,465 copying fairscape_models/biochem_entity.py -> build/lib/fairscape_models 2026-09-09T18:47:19,467 copying fairscape_models/_version.py -> build/lib/fairscape_models 2026-09-09T18:47:19,468 copying fairscape_models/service.py -> build/lib/fairscape_models 2026-09-09T18:47:19,470 copying fairscape_models/person.py -> build/lib/fairscape_models 2026-09-09T18:47:19,472 copying fairscape_models/annotation.py -> build/lib/fairscape_models 2026-09-09T18:47:19,474 copying fairscape_models/computation.py -> build/lib/fairscape_models 2026-09-09T18:47:19,476 copying fairscape_models/instrument.py -> build/lib/fairscape_models 2026-09-09T18:47:19,478 copying fairscape_models/dataset.py -> build/lib/fairscape_models 2026-09-09T18:47:19,481 copying fairscape_models/model_card.py -> build/lib/fairscape_models 2026-09-09T18:47:19,483 creating build/lib/fairscape_models/schema 2026-09-09T18:47:19,485 copying fairscape_models/schema/hdf5.py -> build/lib/fairscape_models/schema 2026-09-09T18:47:19,487 copying fairscape_models/schema/signal.py -> build/lib/fairscape_models/schema 2026-09-09T18:47:19,490 copying fairscape_models/schema/tabular.py -> build/lib/fairscape_models/schema 2026-09-09T18:47:19,492 copying fairscape_models/schema/__init__.py -> build/lib/fairscape_models/schema 2026-09-09T18:47:19,494 copying fairscape_models/schema/base.py -> build/lib/fairscape_models/schema 2026-09-09T18:47:19,497 copying fairscape_models/schema/image.py -> build/lib/fairscape_models/schema 2026-09-09T18:47:19,499 copying fairscape_models/schema/registry.py -> build/lib/fairscape_models/schema 2026-09-09T18:47:19,502 copying fairscape_models/schema/ontology.py -> build/lib/fairscape_models/schema 2026-09-09T18:47:19,504 copying fairscape_models/schema/ndarray.py -> build/lib/fairscape_models/schema 2026-09-09T18:47:19,506 creating build/lib/fairscape_models/conversion 2026-09-09T18:47:19,507 copying fairscape_models/conversion/converter.py -> build/lib/fairscape_models/conversion 2026-09-09T18:47:19,510 copying fairscape_models/conversion/__init__.py -> build/lib/fairscape_models/conversion 2026-09-09T18:47:19,511 copying fairscape_models/conversion/d4d_converter.py -> build/lib/fairscape_models/conversion 2026-09-09T18:47:19,514 creating build/lib/fairscape_models/conversion/models 2026-09-09T18:47:19,515 copying fairscape_models/conversion/models/linkset.py -> build/lib/fairscape_models/conversion/models 2026-09-09T18:47:19,518 copying fairscape_models/conversion/models/d4d.py -> build/lib/fairscape_models/conversion/models 2026-09-09T18:47:19,524 copying fairscape_models/conversion/models/FairscapeDatasheet.py -> build/lib/fairscape_models/conversion/models 2026-09-09T18:47:19,526 copying fairscape_models/conversion/models/__init__.py -> build/lib/fairscape_models/conversion/models 2026-09-09T18:47:19,528 copying fairscape_models/conversion/models/AIReady.py -> build/lib/fairscape_models/conversion/models 2026-09-09T18:47:19,530 copying fairscape_models/conversion/models/Datasheet.py -> build/lib/fairscape_models/conversion/models 2026-09-09T18:47:19,532 copying fairscape_models/conversion/models/croissant.py -> build/lib/fairscape_models/conversion/models 2026-09-09T18:47:19,535 creating build/lib/fairscape_models/conversion/mapping 2026-09-09T18:47:19,536 copying fairscape_models/conversion/mapping/linkset.py -> build/lib/fairscape_models/conversion/mapping 2026-09-09T18:47:19,539 copying fairscape_models/conversion/mapping/subcrate_utils.py -> build/lib/fairscape_models/conversion/mapping 2026-09-09T18:47:19,542 copying fairscape_models/conversion/mapping/d4d_to_rocrate.py -> build/lib/fairscape_models/conversion/mapping 2026-09-09T18:47:19,544 copying fairscape_models/conversion/mapping/utils.py -> build/lib/fairscape_models/conversion/mapping 2026-09-09T18:47:19,546 copying fairscape_models/conversion/mapping/d4d.py -> build/lib/fairscape_models/conversion/mapping 2026-09-09T18:47:19,548 copying fairscape_models/conversion/mapping/FairscapeDatasheet.py -> build/lib/fairscape_models/conversion/mapping 2026-09-09T18:47:19,551 copying fairscape_models/conversion/mapping/__init__.py -> build/lib/fairscape_models/conversion/mapping 2026-09-09T18:47:19,553 copying fairscape_models/conversion/mapping/AIReady.py -> build/lib/fairscape_models/conversion/mapping 2026-09-09T18:47:19,556 copying fairscape_models/conversion/mapping/croissant.py -> build/lib/fairscape_models/conversion/mapping 2026-09-09T18:47:19,558 running egg_info 2026-09-09T18:47:19,568 writing fairscape_models.egg-info/PKG-INFO 2026-09-09T18:47:19,574 writing dependency_links to fairscape_models.egg-info/dependency_links.txt 2026-09-09T18:47:19,578 writing requirements to fairscape_models.egg-info/requires.txt 2026-09-09T18:47:19,579 writing top-level names to fairscape_models.egg-info/top_level.txt 2026-09-09T18:47:19,596 reading manifest file 'fairscape_models.egg-info/SOURCES.txt' 2026-09-09T18:47:19,606 adding license file 'LICENSE' 2026-09-09T18:47:19,615 writing manifest file 'fairscape_models.egg-info/SOURCES.txt' 2026-09-09T18:47:19,618 /tmp/pip-build-env-aqdozx0y/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'fairscape_models.schema.reference_tables' is absent from the `packages` configuration. 2026-09-09T18:47:19,619 !! 2026-09-09T18:47:19,620 ******************************************************************************** 2026-09-09T18:47:19,620 ############################ 2026-09-09T18:47:19,621 # Package would be ignored # 2026-09-09T18:47:19,622 ############################ 2026-09-09T18:47:19,622 Python recognizes 'fairscape_models.schema.reference_tables' as an importable package[^1], 2026-09-09T18:47:19,623 but it is absent from setuptools' `packages` configuration. 2026-09-09T18:47:19,624 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-09T18:47:19,624 package, please make sure that 'fairscape_models.schema.reference_tables' is explicitly added 2026-09-09T18:47:19,624 to the `packages` configuration field. 2026-09-09T18:47:19,625 Alternatively, you can also rely on setuptools' discovery methods 2026-09-09T18:47:19,626 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-09T18:47:19,626 instead of `find_packages(...)`/`find:`). 2026-09-09T18:47:19,627 You can read more about "package discovery" on setuptools documentation page: 2026-09-09T18:47:19,628 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-09T18:47:19,629 If you don't want 'fairscape_models.schema.reference_tables' to be distributed and are 2026-09-09T18:47:19,630 already explicitly excluding 'fairscape_models.schema.reference_tables' via 2026-09-09T18:47:19,630 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-09T18:47:19,631 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-09T18:47:19,631 combination with a more fine grained `package-data` configuration. 2026-09-09T18:47:19,632 You can read more about "package data files" on setuptools documentation page: 2026-09-09T18:47:19,633 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-09T18:47:19,635 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-09T18:47:19,636 even if it does not contain any `.py` files. 2026-09-09T18:47:19,636 On the other hand, currently there is no concept of package data 2026-09-09T18:47:19,637 directory, all directories are treated like packages. 2026-09-09T18:47:19,637 ******************************************************************************** 2026-09-09T18:47:19,638 !! 2026-09-09T18:47:19,639 check.warn(importable) 2026-09-09T18:47:19,640 creating build/lib/fairscape_models/schema/reference_tables 2026-09-09T18:47:19,641 copying fairscape_models/schema/reference_tables/dicom_bodypart_snomed.csv -> build/lib/fairscape_models/schema/reference_tables 2026-09-09T18:47:19,641 copying fairscape_models/schema/reference_tables/dicom_modality.csv -> build/lib/fairscape_models/schema/reference_tables 2026-09-09T18:47:19,642 copying fairscape_models/schema/reference_tables/units_qudt.csv -> build/lib/fairscape_models/schema/reference_tables 2026-09-09T18:47:19,648 installing to build/bdist.linux-armv7l/wheel 2026-09-09T18:47:19,649 running install 2026-09-09T18:47:19,671 running install_lib 2026-09-09T18:47:19,677 creating build/bdist.linux-armv7l/wheel 2026-09-09T18:47:19,679 creating build/bdist.linux-armv7l/wheel/fairscape_models 2026-09-09T18:47:19,680 copying build/lib/fairscape_models/patient.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,682 copying build/lib/fairscape_models/annotated_computation.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,684 copying build/lib/fairscape_models/software.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,686 copying build/lib/fairscape_models/sample.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,688 copying build/lib/fairscape_models/activity.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,690 copying build/lib/fairscape_models/article.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,691 copying build/lib/fairscape_models/digital_object.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,693 copying build/lib/fairscape_models/medical_condition.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,696 creating build/bdist.linux-armv7l/wheel/fairscape_models/schema 2026-09-09T18:47:19,696 copying build/lib/fairscape_models/schema/hdf5.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema 2026-09-09T18:47:19,699 copying build/lib/fairscape_models/schema/signal.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema 2026-09-09T18:47:19,701 copying build/lib/fairscape_models/schema/tabular.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema 2026-09-09T18:47:19,703 copying build/lib/fairscape_models/schema/__init__.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema 2026-09-09T18:47:19,705 copying build/lib/fairscape_models/schema/base.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema 2026-09-09T18:47:19,707 copying build/lib/fairscape_models/schema/image.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema 2026-09-09T18:47:19,709 copying build/lib/fairscape_models/schema/registry.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema 2026-09-09T18:47:19,712 creating build/bdist.linux-armv7l/wheel/fairscape_models/schema/reference_tables 2026-09-09T18:47:19,713 copying build/lib/fairscape_models/schema/reference_tables/dicom_modality.csv -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema/reference_tables 2026-09-09T18:47:19,715 copying build/lib/fairscape_models/schema/reference_tables/units_qudt.csv -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema/reference_tables 2026-09-09T18:47:19,717 copying build/lib/fairscape_models/schema/reference_tables/dicom_bodypart_snomed.csv -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema/reference_tables 2026-09-09T18:47:19,719 copying build/lib/fairscape_models/schema/ontology.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema 2026-09-09T18:47:19,721 copying build/lib/fairscape_models/schema/ndarray.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/schema 2026-09-09T18:47:19,724 creating build/bdist.linux-armv7l/wheel/fairscape_models/conversion 2026-09-09T18:47:19,725 creating build/bdist.linux-armv7l/wheel/fairscape_models/conversion/models 2026-09-09T18:47:19,726 copying build/lib/fairscape_models/conversion/models/linkset.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/models 2026-09-09T18:47:19,728 copying build/lib/fairscape_models/conversion/models/d4d.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/models 2026-09-09T18:47:19,735 copying build/lib/fairscape_models/conversion/models/FairscapeDatasheet.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/models 2026-09-09T18:47:19,737 copying build/lib/fairscape_models/conversion/models/__init__.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/models 2026-09-09T18:47:19,738 copying build/lib/fairscape_models/conversion/models/AIReady.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/models 2026-09-09T18:47:19,741 copying build/lib/fairscape_models/conversion/models/Datasheet.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/models 2026-09-09T18:47:19,743 copying build/lib/fairscape_models/conversion/models/croissant.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/models 2026-09-09T18:47:19,745 copying build/lib/fairscape_models/conversion/converter.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion 2026-09-09T18:47:19,748 creating build/bdist.linux-armv7l/wheel/fairscape_models/conversion/mapping 2026-09-09T18:47:19,749 copying build/lib/fairscape_models/conversion/mapping/linkset.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/mapping 2026-09-09T18:47:19,752 copying build/lib/fairscape_models/conversion/mapping/subcrate_utils.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/mapping 2026-09-09T18:47:19,754 copying build/lib/fairscape_models/conversion/mapping/d4d_to_rocrate.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/mapping 2026-09-09T18:47:19,757 copying build/lib/fairscape_models/conversion/mapping/utils.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/mapping 2026-09-09T18:47:19,758 copying build/lib/fairscape_models/conversion/mapping/d4d.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/mapping 2026-09-09T18:47:19,761 copying build/lib/fairscape_models/conversion/mapping/FairscapeDatasheet.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/mapping 2026-09-09T18:47:19,763 copying build/lib/fairscape_models/conversion/mapping/__init__.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/mapping 2026-09-09T18:47:19,764 copying build/lib/fairscape_models/conversion/mapping/AIReady.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/mapping 2026-09-09T18:47:19,767 copying build/lib/fairscape_models/conversion/mapping/croissant.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion/mapping 2026-09-09T18:47:19,769 copying build/lib/fairscape_models/conversion/__init__.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion 2026-09-09T18:47:19,771 copying build/lib/fairscape_models/conversion/d4d_converter.py -> build/bdist.linux-armv7l/wheel/./fairscape_models/conversion 2026-09-09T18:47:19,773 copying build/lib/fairscape_models/claim.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,774 copying build/lib/fairscape_models/mlmodel.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,776 copying build/lib/fairscape_models/rocrate.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,779 copying build/lib/fairscape_models/annotated_evidence_graph.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,781 copying build/lib/fairscape_models/experiment.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,782 copying build/lib/fairscape_models/__init__.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,784 copying build/lib/fairscape_models/fairscape_base.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,786 copying build/lib/fairscape_models/container.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,788 copying build/lib/fairscape_models/defined_term.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,789 copying build/lib/fairscape_models/biochem_entity.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,791 copying build/lib/fairscape_models/_version.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,793 copying build/lib/fairscape_models/service.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,794 copying build/lib/fairscape_models/person.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,796 copying build/lib/fairscape_models/annotation.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,798 copying build/lib/fairscape_models/computation.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,800 copying build/lib/fairscape_models/instrument.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,802 copying build/lib/fairscape_models/dataset.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,804 copying build/lib/fairscape_models/model_card.py -> build/bdist.linux-armv7l/wheel/./fairscape_models 2026-09-09T18:47:19,806 running install_egg_info 2026-09-09T18:47:19,811 Copying fairscape_models.egg-info to build/bdist.linux-armv7l/wheel/./fairscape_models-1.2.4-py3.11.egg-info 2026-09-09T18:47:19,820 running install_scripts 2026-09-09T18:47:19,830 creating build/bdist.linux-armv7l/wheel/fairscape_models-1.2.4.dist-info/WHEEL 2026-09-09T18:47:19,833 creating '/tmp/pip-wheel-6qct_nwa/.tmp-mrejo_ro/fairscape_models-1.2.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-09-09T18:47:19,835 adding 'fairscape_models/__init__.py' 2026-09-09T18:47:19,836 adding 'fairscape_models/_version.py' 2026-09-09T18:47:19,838 adding 'fairscape_models/activity.py' 2026-09-09T18:47:19,839 adding 'fairscape_models/annotated_computation.py' 2026-09-09T18:47:19,840 adding 'fairscape_models/annotated_evidence_graph.py' 2026-09-09T18:47:19,841 adding 'fairscape_models/annotation.py' 2026-09-09T18:47:19,843 adding 'fairscape_models/article.py' 2026-09-09T18:47:19,844 adding 'fairscape_models/biochem_entity.py' 2026-09-09T18:47:19,845 adding 'fairscape_models/claim.py' 2026-09-09T18:47:19,846 adding 'fairscape_models/computation.py' 2026-09-09T18:47:19,847 adding 'fairscape_models/container.py' 2026-09-09T18:47:19,849 adding 'fairscape_models/dataset.py' 2026-09-09T18:47:19,850 adding 'fairscape_models/defined_term.py' 2026-09-09T18:47:19,852 adding 'fairscape_models/digital_object.py' 2026-09-09T18:47:19,853 adding 'fairscape_models/experiment.py' 2026-09-09T18:47:19,855 adding 'fairscape_models/fairscape_base.py' 2026-09-09T18:47:19,856 adding 'fairscape_models/instrument.py' 2026-09-09T18:47:19,857 adding 'fairscape_models/medical_condition.py' 2026-09-09T18:47:19,858 adding 'fairscape_models/mlmodel.py' 2026-09-09T18:47:19,860 adding 'fairscape_models/model_card.py' 2026-09-09T18:47:19,861 adding 'fairscape_models/patient.py' 2026-09-09T18:47:19,862 adding 'fairscape_models/person.py' 2026-09-09T18:47:19,868 adding 'fairscape_models/rocrate.py' 2026-09-09T18:47:19,869 adding 'fairscape_models/sample.py' 2026-09-09T18:47:19,870 adding 'fairscape_models/service.py' 2026-09-09T18:47:19,872 adding 'fairscape_models/software.py' 2026-09-09T18:47:19,873 adding 'fairscape_models/conversion/__init__.py' 2026-09-09T18:47:19,875 adding 'fairscape_models/conversion/converter.py' 2026-09-09T18:47:19,877 adding 'fairscape_models/conversion/d4d_converter.py' 2026-09-09T18:47:19,880 adding 'fairscape_models/conversion/mapping/AIReady.py' 2026-09-09T18:47:19,883 adding 'fairscape_models/conversion/mapping/FairscapeDatasheet.py' 2026-09-09T18:47:19,884 adding 'fairscape_models/conversion/mapping/__init__.py' 2026-09-09T18:47:19,886 adding 'fairscape_models/conversion/mapping/croissant.py' 2026-09-09T18:47:19,887 adding 'fairscape_models/conversion/mapping/d4d.py' 2026-09-09T18:47:19,890 adding 'fairscape_models/conversion/mapping/d4d_to_rocrate.py' 2026-09-09T18:47:19,892 adding 'fairscape_models/conversion/mapping/linkset.py' 2026-09-09T18:47:19,895 adding 'fairscape_models/conversion/mapping/subcrate_utils.py' 2026-09-09T18:47:19,897 adding 'fairscape_models/conversion/mapping/utils.py' 2026-09-09T18:47:19,899 adding 'fairscape_models/conversion/models/AIReady.py' 2026-09-09T18:47:19,900 adding 'fairscape_models/conversion/models/Datasheet.py' 2026-09-09T18:47:19,902 adding 'fairscape_models/conversion/models/FairscapeDatasheet.py' 2026-09-09T18:47:19,903 adding 'fairscape_models/conversion/models/__init__.py' 2026-09-09T18:47:19,905 adding 'fairscape_models/conversion/models/croissant.py' 2026-09-09T18:47:19,925 adding 'fairscape_models/conversion/models/d4d.py' 2026-09-09T18:47:19,929 adding 'fairscape_models/conversion/models/linkset.py' 2026-09-09T18:47:19,931 adding 'fairscape_models/schema/__init__.py' 2026-09-09T18:47:19,932 adding 'fairscape_models/schema/base.py' 2026-09-09T18:47:19,934 adding 'fairscape_models/schema/hdf5.py' 2026-09-09T18:47:19,936 adding 'fairscape_models/schema/image.py' 2026-09-09T18:47:19,937 adding 'fairscape_models/schema/ndarray.py' 2026-09-09T18:47:19,939 adding 'fairscape_models/schema/ontology.py' 2026-09-09T18:47:19,941 adding 'fairscape_models/schema/registry.py' 2026-09-09T18:47:19,943 adding 'fairscape_models/schema/signal.py' 2026-09-09T18:47:19,945 adding 'fairscape_models/schema/tabular.py' 2026-09-09T18:47:19,948 adding 'fairscape_models/schema/reference_tables/dicom_bodypart_snomed.csv' 2026-09-09T18:47:19,950 adding 'fairscape_models/schema/reference_tables/dicom_modality.csv' 2026-09-09T18:47:19,951 adding 'fairscape_models/schema/reference_tables/units_qudt.csv' 2026-09-09T18:47:19,954 adding 'fairscape_models-1.2.4.dist-info/licenses/LICENSE' 2026-09-09T18:47:19,955 adding 'fairscape_models-1.2.4.dist-info/METADATA' 2026-09-09T18:47:19,956 adding 'fairscape_models-1.2.4.dist-info/WHEEL' 2026-09-09T18:47:19,957 adding 'fairscape_models-1.2.4.dist-info/top_level.txt' 2026-09-09T18:47:19,958 adding 'fairscape_models-1.2.4.dist-info/RECORD' 2026-09-09T18:47:19,962 removing build/bdist.linux-armv7l/wheel 2026-09-09T18:47:20,081 Building wheel for fairscape-models (pyproject.toml): finished with status 'done' 2026-09-09T18:47:20,088 Created wheel for fairscape-models: filename=fairscape_models-1.2.4-py3-none-any.whl size=150063 sha256=4e2e49852c08d6e8a4e114db2d60f0425570d693724be47084bdf14df0b88699 2026-09-09T18:47:20,089 Stored in directory: /tmp/pip-ephem-wheel-cache-86c5tqcm/wheels/a1/12/8d/7533ceb8dbb95864043342b7181a4d8001ac8bb92a96f6eaab 2026-09-09T18:47:20,102 Successfully built fairscape-models 2026-09-09T18:47:20,109 Removed build tracker: '/tmp/pip-build-tracker-0qngpowc'