2026-09-14T19:26:36,990 Created temporary directory: /tmp/pip-ephem-wheel-cache-9sk54nu8 2026-09-14T19:26:36,992 Created temporary directory: /tmp/pip-build-tracker-84lzjuo4 2026-09-14T19:26:36,993 Initialized build tracking at /tmp/pip-build-tracker-84lzjuo4 2026-09-14T19:26:36,993 Created build tracker: /tmp/pip-build-tracker-84lzjuo4 2026-09-14T19:26:36,994 Entered build tracker: /tmp/pip-build-tracker-84lzjuo4 2026-09-14T19:26:36,994 Created temporary directory: /tmp/pip-wheel-aa96pkh2 2026-09-14T19:26:36,997 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-14T19:26:37,000 Created temporary directory: /tmp/pip-ephem-wheel-cache-52pf6pql 2026-09-14T19:26:37,022 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-14T19:26:37,026 2 location(s) to search for versions of pinder: 2026-09-14T19:26:37,026 * https://pypi.org/simple/pinder/ 2026-09-14T19:26:37,026 * https://www.piwheels.org/simple/pinder/ 2026-09-14T19:26:37,027 Fetching project page and analyzing links: https://pypi.org/simple/pinder/ 2026-09-14T19:26:37,027 Getting page https://pypi.org/simple/pinder/ 2026-09-14T19:26:37,029 Found index url https://pypi.org/simple 2026-09-14T19:26:37,263 Fetched page https://pypi.org/simple/pinder/ as application/vnd.pypi.simple.v1+json 2026-09-14T19:26:37,269 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/cd/e5/a5976b9e493a4eef6196cdb33a92dc132b838830f9874b88d6bd591f55d0/pinder-0.0.1-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,270 Found link https://files.pythonhosted.org/packages/d3/6f/77f4349b73c26cff13e2a6e2f0712ae1b388424418f6df8980e4c055d628/pinder-0.0.1.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.0.1 2026-09-14T19:26:37,271 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/e5/43/851118d282d427f812093f3fa6445e37ced3717d0f46c3b7afd212cd790b/pinder-0.0.2-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,272 Found link https://files.pythonhosted.org/packages/0e/1f/a2705bfa2581b207d597b233ef90f4cc96223200aeca63e3742afa042058/pinder-0.0.2.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.0.2 2026-09-14T19:26:37,273 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/cc/63/767408e6559ee9f7d812f98610373e1545f2e422a33f006f26527200748b/pinder-0.1.0-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,274 Found link https://files.pythonhosted.org/packages/f5/87/b3c268b46c39039ba71cdd1da68e5b81a9770d7237ddd2fcd4ed5025481c/pinder-0.1.0.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.1.0 2026-09-14T19:26:37,275 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/50/35/2674eebb95f4ad1210acaa15df1835cc89b0a6ad528a1343271068086788/pinder-0.1.1-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,276 Found link https://files.pythonhosted.org/packages/83/f2/42f3c2701eed80f4a407fe8030db25cf112c46c3da0ef63719479289f3a5/pinder-0.1.1.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.1.1 2026-09-14T19:26:37,277 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/f5/c9/131d358b165252dde6eb12c80ea9bb9cf5fa831a1b27bbfd5106b9209a9e/pinder-0.2.0-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,278 Found link https://files.pythonhosted.org/packages/07/f9/43d7096a4a74e94b41638802d2bf21afa4885d505a773f1b6ff8f30b9afc/pinder-0.2.0.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.2.0 2026-09-14T19:26:37,279 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/c7/3b/d550a9c785bb5a037f51b476f47dffcd76cfc872e6f2f5a530f98d69b02d/pinder-0.2.1-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,280 Found link https://files.pythonhosted.org/packages/c5/37/8b628861aa8cf7d0cb31a27014a2bc4d476deee1c876726296b01bf4e8c5/pinder-0.2.1.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.2.1 2026-09-14T19:26:37,280 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/5a/3b/eb0ce8d115576afd37caecc05cb895e975f45268e6c21778c045ff7f0dd8/pinder-0.2.2-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,281 Found link https://files.pythonhosted.org/packages/73/c4/47dfd298c5aaf8a913a534e798a7f71b5a34c34a99ea5fdee378a1a49d1a/pinder-0.2.2.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.2.2 2026-09-14T19:26:37,282 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/22/62/5d97011b770ba4051f93dacc25dd80140c8f546a26c8f0c4f5d9db607a01/pinder-0.3.0-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,283 Found link https://files.pythonhosted.org/packages/f4/84/b7462c65d63155ccaa355098c410ba2d709206ecd65ecb07562b1d84eed4/pinder-0.3.0.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.3.0 2026-09-14T19:26:37,283 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/dc/b0/c0a504ac1a65f76b1c2d4a7929429e506f1b0187427fb10fd44d6ef28170/pinder-0.3.1-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,284 Found link https://files.pythonhosted.org/packages/c5/24/12fc4083920900cd4e0b9a05044b9e383841ebd39dd08e513ef01f4c37fa/pinder-0.3.1.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.3.1 2026-09-14T19:26:37,285 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/ce/2a/968a35126513bab9239903537df47216f4970837292b0bdc1d3b0f41317c/pinder-0.3.2-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,286 Found link https://files.pythonhosted.org/packages/0f/7c/ed7de54057a1e3963af0624307d25b637186b2424df3e2198cdb93b12d13/pinder-0.3.2.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.3.2 2026-09-14T19:26:37,287 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/3d/41/49cb2bee798a9061bcd33053c3eb643ab9f94bda1955197ac0202ebc00ac/pinder-0.4.0-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,288 Found link https://files.pythonhosted.org/packages/45/7c/db6dc138126caa49fdf00f0411a6342142d5c72ac20aae7761bb537ae4bb/pinder-0.4.0.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.4.0 2026-09-14T19:26:37,289 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/6a/50/bb112518abb8918349f161005ab2d631b8becc8e43995aabca0ae15af4a2/pinder-0.4.1-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,289 Found link https://files.pythonhosted.org/packages/af/92/00947109dd794d03f2bc6f198bae39d6a0fa4075cd87638c531da41be74d/pinder-0.4.1.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.9), version: 0.4.1 2026-09-14T19:26:37,290 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/42/bc/e0cdc1153dec4b89b64bac61088b059e01875c5cd5a1be0fc7b9a96a4850/pinder-0.5.0-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.10) 2026-09-14T19:26:37,291 Found link https://files.pythonhosted.org/packages/f2/c6/f10a875cc61fdf549fe1740a1bb14ecb5ef00b3c42b6fcb5b3f4db9d8eeb/pinder-0.5.0.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.10), version: 0.5.0 2026-09-14T19:26:37,292 Skipping link: No binaries permitted for pinder: https://files.pythonhosted.org/packages/8d/09/729c6a48155ec8eff1c563f34cbb68de06f4b9fad952b2f350d069df3ff7/pinder-0.6.0-py3-none-any.whl (from https://pypi.org/simple/pinder/) (requires-python:>=3.10) 2026-09-14T19:26:37,293 Found link https://files.pythonhosted.org/packages/04/f9/3bb3e1a4e53c658fe97006141b1aa4178c1fb239d86590e9cd93d4ec27b3/pinder-0.6.0.tar.gz (from https://pypi.org/simple/pinder/) (requires-python:>=3.10), version: 0.6.0 2026-09-14T19:26:37,294 Fetching project page and analyzing links: https://www.piwheels.org/simple/pinder/ 2026-09-14T19:26:37,294 Getting page https://www.piwheels.org/simple/pinder/ 2026-09-14T19:26:37,295 Found index url https://www.piwheels.org/simple 2026-09-14T19:26:37,485 Fetched page https://www.piwheels.org/simple/pinder/ as text/html 2026-09-14T19:26:37,490 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.5.0-py3-none-any.whl#sha256=b18f6c04f39bc31132bf379613d301b90a5c49269eac3181b711e3936b7506f9 (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.10) 2026-09-14T19:26:37,491 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.4.1-py3-none-any.whl#sha256=ff6708bc78241e40e5a8ec68e7c68d01a688bf5abeb7e88a8bc04c4978df2a5a (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,492 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.4.0-py3-none-any.whl#sha256=75c8894c57cfb7c0b1fa25f50c553930683727c3df425358e3c8ce3bdd31bfe4 (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,492 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.3.2-py3-none-any.whl#sha256=782fd8b364b8d339bcfa0ff6d3cf5e98db667227b8fdc24257ae0786810234be (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,493 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.3.1-py3-none-any.whl#sha256=4fdaf867303df89d564336bccb1efb59b1c05b29c77bfddb0ddefe2819cce507 (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,493 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.3.0-py3-none-any.whl#sha256=7120c81db3cf283370ea9d43655fe01577d9863908d67a003da3963d20f3fcf6 (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,494 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.2.2-py3-none-any.whl#sha256=ad4e3d1af044361c04f970e16e3512d63810997bf714eb416646530b76d7a21e (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,495 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.2.1-py3-none-any.whl#sha256=43f9e95ab8077175226f4a7bf572b9e67f01ccac8b439bef1eaa9f02963a6998 (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,495 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.2.0-py3-none-any.whl#sha256=5bb82f1290778a8fa3621aa36fb16ebe7864648b4f26e0712f01c57b3d52cc23 (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,496 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.1.1-py3-none-any.whl#sha256=7d7f8df15d65aba26c25ddc4c9aa725004b93d4dc8aa4f1fd8eeed647a37e969 (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,496 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.1.0-py3-none-any.whl#sha256=ebafa7af636eb571e07e8637b69301b3598bc29a5ae5915e37df128056ef331a (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,497 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.0.2-py3-none-any.whl#sha256=9234e7e104e69b8ac7b192ec747e5e3ccd78f92461e14fd32e70e4d4d6b08bc4 (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,498 Skipping link: No binaries permitted for pinder: https://archive1.piwheels.org/simple/pinder/pinder-0.0.1-py3-none-any.whl#sha256=97b2cdf453c1be4089f3a80b58baa3f648d953bb9473357dad6a7bbdbeb162f2 (from https://www.piwheels.org/simple/pinder/) (requires-python:>=3.9) 2026-09-14T19:26:37,498 Skipping link: not a file: https://www.piwheels.org/simple/pinder/ 2026-09-14T19:26:37,499 Skipping link: not a file: https://pypi.org/simple/pinder/ 2026-09-14T19:26:37,519 Given no hashes to check 1 links for project 'pinder': discarding no candidates 2026-09-14T19:26:37,537 Collecting pinder==0.6.0 2026-09-14T19:26:37,540 Created temporary directory: /tmp/pip-unpack-t09skv5b 2026-09-14T19:26:37,694 Downloading pinder-0.6.0.tar.gz (22.7 MB) 2026-09-14T19:26:42,991 Added pinder==0.6.0 from https://files.pythonhosted.org/packages/04/f9/3bb3e1a4e53c658fe97006141b1aa4178c1fb239d86590e9cd93d4ec27b3/pinder-0.6.0.tar.gz to build tracker '/tmp/pip-build-tracker-84lzjuo4' 2026-09-14T19:26:43,000 Created temporary directory: /tmp/pip-build-env-3y0js8gf 2026-09-14T19:26:43,004 Installing build dependencies: started 2026-09-14T19:26:43,005 Running command pip subprocess to install build dependencies 2026-09-14T19:26:44,135 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-09-14T19:26:44,562 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-14T19:26:44,585 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-14T19:26:45,198 Collecting build==0.10.0 2026-09-14T19:26:45,199 Obtaining dependency information for build==0.10.0 from https://www.piwheels.org/simple/build/build-0.10.0-py3-none-any.whl.metadata 2026-09-14T19:26:45,210 Downloading https://www.piwheels.org/simple/build/build-0.10.0-py3-none-any.whl.metadata (4.1 kB) 2026-09-14T19:26:46,678 Collecting setuptools>=65.4.0 2026-09-14T19:26:46,679 Obtaining dependency information for setuptools>=65.4.0 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-09-14T19:26:46,697 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-09-14T19:26:47,069 Collecting setuptools_scm[toml]>=7.1.0 2026-09-14T19:26:47,075 Using cached setuptools_scm-10.3.1-py3-none-any.whl (30 kB) 2026-09-14T19:26:47,346 Collecting packaging>=19.0 2026-09-14T19:26:47,347 Obtaining dependency information for packaging>=19.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-09-14T19:26:47,361 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-09-14T19:26:47,723 Collecting pyproject_hooks 2026-09-14T19:26:47,724 Obtaining dependency information for pyproject_hooks from https://www.piwheels.org/simple/pyproject-hooks/pyproject_hooks-1.2.0-py3-none-any.whl.metadata 2026-09-14T19:26:47,739 Using cached https://www.piwheels.org/simple/pyproject-hooks/pyproject_hooks-1.2.0-py3-none-any.whl.metadata (1.3 kB) 2026-09-14T19:26:47,858 Collecting vcs-versioning<3,>=2.4.0.dev0 2026-09-14T19:26:47,859 Obtaining dependency information for vcs-versioning<3,>=2.4.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.4.0-py3-none-any.whl.metadata 2026-09-14T19:26:47,873 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.4.0-py3-none-any.whl.metadata (1.7 kB) 2026-09-14T19:26:48,162 Downloading https://www.piwheels.org/simple/build/build-0.10.0-py3-none-any.whl (17 kB) 2026-09-14T19:26:48,191 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-14T19:26:48,215 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.4.0-py3-none-any.whl (120 kB) 2026-09-14T19:26:48,233 Using cached https://www.piwheels.org/simple/pyproject-hooks/pyproject_hooks-1.2.0-py3-none-any.whl (10 kB) 2026-09-14T19:26:48,317 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-14T19:26:48,353 Using cached https://www.piwheels.org/simple/build/build-0.10.0-py3-none-any.whl (17 kB) 2026-09-14T19:26:48,380 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-14T19:26:48,412 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.4.0-py3-none-any.whl (120 kB) 2026-09-14T19:26:48,437 Using cached https://www.piwheels.org/simple/pyproject-hooks/pyproject_hooks-1.2.0-py3-none-any.whl (10 kB) 2026-09-14T19:26:48,511 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-14T19:26:51,391 Installing collected packages: setuptools, pyproject_hooks, packaging, vcs-versioning, build, setuptools_scm 2026-09-14T19:26:54,404 Creating /tmp/pip-build-env-3y0js8gf/overlay/local/bin 2026-09-14T19:26:54,406 changing mode of /tmp/pip-build-env-3y0js8gf/overlay/local/bin/vcs-versioning to 755 2026-09-14T19:26:54,471 changing mode of /tmp/pip-build-env-3y0js8gf/overlay/local/bin/pyproject-build to 755 2026-09-14T19:26:54,615 changing mode of /tmp/pip-build-env-3y0js8gf/overlay/local/bin/setuptools-scm to 755 2026-09-14T19:26:54,660 Successfully installed build-0.10.0 packaging-26.3 pyproject_hooks-1.2.0 setuptools-84.0.0 setuptools_scm-10.3.1 vcs-versioning-2.4.0 2026-09-14T19:26:54,960 Installing build dependencies: finished with status 'done' 2026-09-14T19:26:54,968 Getting requirements to build wheel: started 2026-09-14T19:26:54,969 Running command Getting requirements to build wheel 2026-09-14T19:26:55,828 /tmp/pip-build-env-3y0js8gf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-14T19:26:55,829 !! 2026-09-14T19:26:55,830 ******************************************************************************** 2026-09-14T19:26:55,830 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-14T19:26:55,831 License :: OSI Approved :: Apache Software License 2026-09-14T19:26:55,832 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-14T19:26:55,833 ******************************************************************************** 2026-09-14T19:26:55,834 !! 2026-09-14T19:26:55,835 dist._finalize_license_expression() 2026-09-14T19:26:55,835 /tmp/pip-build-env-3y0js8gf/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-14T19:26:55,836 !! 2026-09-14T19:26:55,837 ******************************************************************************** 2026-09-14T19:26:55,838 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-14T19:26:55,839 License :: OSI Approved :: Apache Software License 2026-09-14T19:26:55,840 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-14T19:26:55,840 ******************************************************************************** 2026-09-14T19:26:55,842 !! 2026-09-14T19:26:55,842 self._finalize_license_expression() 2026-09-14T19:26:55,843 running egg_info 2026-09-14T19:26:55,853 writing pinder.egg-info/PKG-INFO 2026-09-14T19:26:55,870 writing dependency_links to pinder.egg-info/dependency_links.txt 2026-09-14T19:26:55,872 writing entry points to pinder.egg-info/entry_points.txt 2026-09-14T19:26:55,880 writing requirements to pinder.egg-info/requires.txt 2026-09-14T19:26:55,881 writing top-level names to pinder.egg-info/top_level.txt 2026-09-14T19:26:56,005 adding license file 'LICENSE' 2026-09-14T19:26:56,032 writing manifest file 'pinder.egg-info/SOURCES.txt' 2026-09-14T19:26:56,142 Getting requirements to build wheel: finished with status 'done' 2026-09-14T19:26:56,145 Created temporary directory: /tmp/pip-modern-metadata-sq8mlnh9 2026-09-14T19:26:56,147 Preparing metadata (pyproject.toml): started 2026-09-14T19:26:56,149 Running command Preparing metadata (pyproject.toml) 2026-09-14T19:26:56,948 /tmp/pip-build-env-3y0js8gf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-14T19:26:56,948 !! 2026-09-14T19:26:56,949 ******************************************************************************** 2026-09-14T19:26:56,950 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-14T19:26:56,951 License :: OSI Approved :: Apache Software License 2026-09-14T19:26:56,952 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-14T19:26:56,952 ******************************************************************************** 2026-09-14T19:26:56,953 !! 2026-09-14T19:26:56,954 dist._finalize_license_expression() 2026-09-14T19:26:56,956 /tmp/pip-build-env-3y0js8gf/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-14T19:26:56,957 !! 2026-09-14T19:26:56,958 ******************************************************************************** 2026-09-14T19:26:56,959 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-14T19:26:56,960 License :: OSI Approved :: Apache Software License 2026-09-14T19:26:56,961 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-14T19:26:56,962 ******************************************************************************** 2026-09-14T19:26:56,963 !! 2026-09-14T19:26:56,964 self._finalize_license_expression() 2026-09-14T19:26:56,966 running dist_info 2026-09-14T19:26:56,968 creating /tmp/pip-modern-metadata-sq8mlnh9/pinder.egg-info 2026-09-14T19:26:56,983 writing /tmp/pip-modern-metadata-sq8mlnh9/pinder.egg-info/PKG-INFO 2026-09-14T19:26:56,999 writing dependency_links to /tmp/pip-modern-metadata-sq8mlnh9/pinder.egg-info/dependency_links.txt 2026-09-14T19:26:57,001 writing entry points to /tmp/pip-modern-metadata-sq8mlnh9/pinder.egg-info/entry_points.txt 2026-09-14T19:26:57,008 writing requirements to /tmp/pip-modern-metadata-sq8mlnh9/pinder.egg-info/requires.txt 2026-09-14T19:26:57,010 writing top-level names to /tmp/pip-modern-metadata-sq8mlnh9/pinder.egg-info/top_level.txt 2026-09-14T19:26:57,013 writing manifest file '/tmp/pip-modern-metadata-sq8mlnh9/pinder.egg-info/SOURCES.txt' 2026-09-14T19:26:57,061 adding license file 'LICENSE' 2026-09-14T19:26:57,088 writing manifest file '/tmp/pip-modern-metadata-sq8mlnh9/pinder.egg-info/SOURCES.txt' 2026-09-14T19:26:57,090 creating '/tmp/pip-modern-metadata-sq8mlnh9/pinder-0.6.0.dist-info' 2026-09-14T19:26:57,241 Preparing metadata (pyproject.toml): finished with status 'done' 2026-09-14T19:26:57,253 Source in /tmp/pip-wheel-aa96pkh2/pinder_b6758edc1ee3444996091806ba625657 has version 0.6.0, which satisfies requirement pinder==0.6.0 from https://files.pythonhosted.org/packages/04/f9/3bb3e1a4e53c658fe97006141b1aa4178c1fb239d86590e9cd93d4ec27b3/pinder-0.6.0.tar.gz 2026-09-14T19:26:57,254 Removed pinder==0.6.0 from https://files.pythonhosted.org/packages/04/f9/3bb3e1a4e53c658fe97006141b1aa4178c1fb239d86590e9cd93d4ec27b3/pinder-0.6.0.tar.gz from build tracker '/tmp/pip-build-tracker-84lzjuo4' 2026-09-14T19:26:57,268 Created temporary directory: /tmp/pip-unpack-oj_qiq8v 2026-09-14T19:26:57,269 Building wheels for collected packages: pinder 2026-09-14T19:26:57,274 Created temporary directory: /tmp/pip-wheel-ds82lmj4 2026-09-14T19:26:57,274 Destination directory: /tmp/pip-wheel-ds82lmj4 2026-09-14T19:26:57,277 Building wheel for pinder (pyproject.toml): started 2026-09-14T19:26:57,278 Running command Building wheel for pinder (pyproject.toml) 2026-09-14T19:26:58,051 /tmp/pip-build-env-3y0js8gf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-14T19:26:58,051 !! 2026-09-14T19:26:58,052 ******************************************************************************** 2026-09-14T19:26:58,053 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-14T19:26:58,054 License :: OSI Approved :: Apache Software License 2026-09-14T19:26:58,055 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-14T19:26:58,055 ******************************************************************************** 2026-09-14T19:26:58,056 !! 2026-09-14T19:26:58,057 dist._finalize_license_expression() 2026-09-14T19:26:58,059 /tmp/pip-build-env-3y0js8gf/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-14T19:26:58,059 !! 2026-09-14T19:26:58,060 ******************************************************************************** 2026-09-14T19:26:58,061 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-14T19:26:58,062 License :: OSI Approved :: Apache Software License 2026-09-14T19:26:58,063 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-14T19:26:58,064 ******************************************************************************** 2026-09-14T19:26:58,065 !! 2026-09-14T19:26:58,066 self._finalize_license_expression() 2026-09-14T19:26:58,066 running bdist_wheel 2026-09-14T19:26:58,088 running build 2026-09-14T19:26:58,089 running build_py 2026-09-14T19:26:58,090 creating build/lib/pinder/core 2026-09-14T19:26:58,093 copying src/pinder-core/pinder/core/__init__.py -> build/lib/pinder/core 2026-09-14T19:26:58,095 copying src/pinder-core/pinder/core/_version.py -> build/lib/pinder/core 2026-09-14T19:26:58,097 creating build/lib/pinder/core/loader 2026-09-14T19:26:58,099 copying src/pinder-core/pinder/core/loader/structure.py -> build/lib/pinder/core/loader 2026-09-14T19:26:58,101 copying src/pinder-core/pinder/core/loader/utils.py -> build/lib/pinder/core/loader 2026-09-14T19:26:58,103 copying src/pinder-core/pinder/core/loader/filters.py -> build/lib/pinder/core/loader 2026-09-14T19:26:58,106 copying src/pinder-core/pinder/core/loader/__init__.py -> build/lib/pinder/core/loader 2026-09-14T19:26:58,107 copying src/pinder-core/pinder/core/loader/geodata.py -> build/lib/pinder/core/loader 2026-09-14T19:26:58,110 copying src/pinder-core/pinder/core/loader/transforms.py -> build/lib/pinder/core/loader 2026-09-14T19:26:58,111 copying src/pinder-core/pinder/core/loader/writer.py -> build/lib/pinder/core/loader 2026-09-14T19:26:58,113 copying src/pinder-core/pinder/core/loader/loader.py -> build/lib/pinder/core/loader 2026-09-14T19:26:58,116 copying src/pinder-core/pinder/core/loader/dataset.py -> build/lib/pinder/core/loader 2026-09-14T19:26:58,119 creating build/lib/pinder/core/utils 2026-09-14T19:26:58,120 copying src/pinder-core/pinder/core/utils/dataclass.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,122 copying src/pinder-core/pinder/core/utils/process.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,124 copying src/pinder-core/pinder/core/utils/timer.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,126 copying src/pinder-core/pinder/core/utils/constants.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,128 copying src/pinder-core/pinder/core/utils/__init__.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,130 copying src/pinder-core/pinder/core/utils/string.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,132 copying src/pinder-core/pinder/core/utils/retry.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,133 copying src/pinder-core/pinder/core/utils/paths.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,136 copying src/pinder-core/pinder/core/utils/log.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,138 copying src/pinder-core/pinder/core/utils/cloud.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,141 copying src/pinder-core/pinder/core/utils/unbound.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,143 copying src/pinder-core/pinder/core/utils/pdb_utils.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,145 copying src/pinder-core/pinder/core/utils/dataset.py -> build/lib/pinder/core/utils 2026-09-14T19:26:58,147 creating build/lib/pinder/core/submit 2026-09-14T19:26:58,148 copying src/pinder-core/pinder/core/submit/__init__.py -> build/lib/pinder/core/submit 2026-09-14T19:26:58,150 creating build/lib/pinder/core/index 2026-09-14T19:26:58,151 copying src/pinder-core/pinder/core/index/system.py -> build/lib/pinder/core/index 2026-09-14T19:26:58,154 copying src/pinder-core/pinder/core/index/utils.py -> build/lib/pinder/core/index 2026-09-14T19:26:58,157 copying src/pinder-core/pinder/core/index/__init__.py -> build/lib/pinder/core/index 2026-09-14T19:26:58,159 copying src/pinder-core/pinder/core/index/id.py -> build/lib/pinder/core/index 2026-09-14T19:26:58,162 creating build/lib/pinder/core/structure 2026-09-14T19:26:58,163 copying src/pinder-core/pinder/core/structure/contacts.py -> build/lib/pinder/core/structure 2026-09-14T19:26:58,165 copying src/pinder-core/pinder/core/structure/superimpose.py -> build/lib/pinder/core/structure 2026-09-14T19:26:58,168 copying src/pinder-core/pinder/core/structure/atoms.py -> build/lib/pinder/core/structure 2026-09-14T19:26:58,170 copying src/pinder-core/pinder/core/structure/surgery.py -> build/lib/pinder/core/structure 2026-09-14T19:26:58,173 copying src/pinder-core/pinder/core/structure/__init__.py -> build/lib/pinder/core/structure 2026-09-14T19:26:58,174 copying src/pinder-core/pinder/core/structure/models.py -> build/lib/pinder/core/structure 2026-09-14T19:26:58,177 creating build/lib/pinder/data 2026-09-14T19:26:58,178 copying src/pinder-data/pinder/data/csv_utils.py -> build/lib/pinder/data 2026-09-14T19:26:58,180 copying src/pinder-data/pinder/data/rcsb_rsync.py -> build/lib/pinder/data 2026-09-14T19:26:58,182 copying src/pinder-data/pinder/data/find_transitive_hits.py -> build/lib/pinder/data 2026-09-14T19:26:58,185 copying src/pinder-data/pinder/data/system.py -> build/lib/pinder/data 2026-09-14T19:26:58,186 copying src/pinder-data/pinder/data/run.py -> build/lib/pinder/data 2026-09-14T19:26:58,189 copying src/pinder-data/pinder/data/get_annotations.py -> build/lib/pinder/data 2026-09-14T19:26:58,191 copying src/pinder-data/pinder/data/alignment_utils.py -> build/lib/pinder/data 2026-09-14T19:26:58,194 copying src/pinder-data/pinder/data/foldseek_utils.py -> build/lib/pinder/data 2026-09-14T19:26:58,196 copying src/pinder-data/pinder/data/get_alignment_similarity.py -> build/lib/pinder/data 2026-09-14T19:26:58,199 copying src/pinder-data/pinder/data/get_test_set.py -> build/lib/pinder/data 2026-09-14T19:26:58,201 copying src/pinder-data/pinder/data/get_dimers.py -> build/lib/pinder/data 2026-09-14T19:26:58,204 copying src/pinder-data/pinder/data/get_clusters.py -> build/lib/pinder/data 2026-09-14T19:26:58,207 copying src/pinder-data/pinder/data/__init__.py -> build/lib/pinder/data 2026-09-14T19:26:58,208 copying src/pinder-data/pinder/data/get_splits.py -> build/lib/pinder/data 2026-09-14T19:26:58,211 copying src/pinder-data/pinder/data/get_data.py -> build/lib/pinder/data 2026-09-14T19:26:58,213 copying src/pinder-data/pinder/data/_version.py -> build/lib/pinder/data 2026-09-14T19:26:58,215 copying src/pinder-data/pinder/data/graph_utils.py -> build/lib/pinder/data 2026-09-14T19:26:58,217 copying src/pinder-data/pinder/data/config.py -> build/lib/pinder/data 2026-09-14T19:26:58,220 copying src/pinder-data/pinder/data/apo_utils.py -> build/lib/pinder/data 2026-09-14T19:26:58,222 copying src/pinder-data/pinder/data/get_apo.py -> build/lib/pinder/data 2026-09-14T19:26:58,226 creating build/lib/pinder/data/annotation 2026-09-14T19:26:58,227 copying src/pinder-data/pinder/data/annotation/planarity.py -> build/lib/pinder/data/annotation 2026-09-14T19:26:58,228 copying src/pinder-data/pinder/data/annotation/sabdab.py -> build/lib/pinder/data/annotation 2026-09-14T19:26:58,231 copying src/pinder-data/pinder/data/annotation/interface_gaps.py -> build/lib/pinder/data/annotation 2026-09-14T19:26:58,233 copying src/pinder-data/pinder/data/annotation/constants.py -> build/lib/pinder/data/annotation 2026-09-14T19:26:58,235 copying src/pinder-data/pinder/data/annotation/detached_components.py -> build/lib/pinder/data/annotation 2026-09-14T19:26:58,236 copying src/pinder-data/pinder/data/annotation/canonical_apo.py -> build/lib/pinder/data/annotation 2026-09-14T19:26:58,239 copying src/pinder-data/pinder/data/annotation/graphql.py -> build/lib/pinder/data/annotation 2026-09-14T19:26:58,241 copying src/pinder-data/pinder/data/annotation/contact_classification.py -> build/lib/pinder/data/annotation 2026-09-14T19:26:58,243 copying src/pinder-data/pinder/data/annotation/__init__.py -> build/lib/pinder/data/annotation 2026-09-14T19:26:58,245 copying src/pinder-data/pinder/data/annotation/elongation.py -> build/lib/pinder/data/annotation 2026-09-14T19:26:58,247 creating build/lib/pinder/data/pipeline 2026-09-14T19:26:58,248 copying src/pinder-data/pinder/data/pipeline/data_pipeline.py -> build/lib/pinder/data/pipeline 2026-09-14T19:26:58,251 copying src/pinder-data/pinder/data/pipeline/constants.py -> build/lib/pinder/data/pipeline 2026-09-14T19:26:58,253 copying src/pinder-data/pinder/data/pipeline/tasks.py -> build/lib/pinder/data/pipeline 2026-09-14T19:26:58,255 copying src/pinder-data/pinder/data/pipeline/__init__.py -> build/lib/pinder/data/pipeline 2026-09-14T19:26:58,256 copying src/pinder-data/pinder/data/pipeline/cache.py -> build/lib/pinder/data/pipeline 2026-09-14T19:26:58,258 copying src/pinder-data/pinder/data/pipeline/scatter.py -> build/lib/pinder/data/pipeline 2026-09-14T19:26:58,261 creating build/lib/pinder/data/qc 2026-09-14T19:26:58,262 copying src/pinder-data/pinder/data/qc/run.py -> build/lib/pinder/data/qc 2026-09-14T19:26:58,264 copying src/pinder-data/pinder/data/qc/pfam_diversity.py -> build/lib/pinder/data/qc 2026-09-14T19:26:58,266 copying src/pinder-data/pinder/data/qc/utils.py -> build/lib/pinder/data/qc 2026-09-14T19:26:58,268 copying src/pinder-data/pinder/data/qc/similarity_check.py -> build/lib/pinder/data/qc 2026-09-14T19:26:58,271 copying src/pinder-data/pinder/data/qc/annotation_check.py -> build/lib/pinder/data/qc 2026-09-14T19:26:58,273 copying src/pinder-data/pinder/data/qc/__init__.py -> build/lib/pinder/data/qc 2026-09-14T19:26:58,275 copying src/pinder-data/pinder/data/qc/ialign.py -> build/lib/pinder/data/qc 2026-09-14T19:26:58,277 copying src/pinder-data/pinder/data/qc/uniprot_leakage.py -> build/lib/pinder/data/qc 2026-09-14T19:26:58,280 creating build/lib/pinder/data/plot 2026-09-14T19:26:58,281 copying src/pinder-data/pinder/data/plot/leaderboards.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,283 copying src/pinder-data/pinder/data/plot/run.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,285 copying src/pinder-data/pinder/data/plot/plot.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,287 copying src/pinder-data/pinder/data/plot/datasets.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,290 copying src/pinder-data/pinder/data/plot/constants.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,292 copying src/pinder-data/pinder/data/plot/leakage.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,294 copying src/pinder-data/pinder/data/plot/figure_utils.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,296 copying src/pinder-data/pinder/data/plot/difficulty.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,298 copying src/pinder-data/pinder/data/plot/__init__.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,300 copying src/pinder-data/pinder/data/plot/validity.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,302 copying src/pinder-data/pinder/data/plot/image.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,304 copying src/pinder-data/pinder/data/plot/annotations.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,306 copying src/pinder-data/pinder/data/plot/performance.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,308 copying src/pinder-data/pinder/data/plot/categories.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,311 copying src/pinder-data/pinder/data/plot/structure_case_studies.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,313 copying src/pinder-data/pinder/data/plot/families.py -> build/lib/pinder/data/plot 2026-09-14T19:26:58,316 creating build/lib/pinder/eval 2026-09-14T19:26:58,317 copying src/pinder-eval/pinder/eval/run.py -> build/lib/pinder/eval 2026-09-14T19:26:58,319 copying src/pinder-eval/pinder/eval/create_submission.py -> build/lib/pinder/eval 2026-09-14T19:26:58,320 copying src/pinder-eval/pinder/eval/__init__.py -> build/lib/pinder/eval 2026-09-14T19:26:58,322 copying src/pinder-eval/pinder/eval/_version.py -> build/lib/pinder/eval 2026-09-14T19:26:58,324 creating build/lib/pinder/eval/clashes 2026-09-14T19:26:58,325 copying src/pinder-eval/pinder/eval/clashes/__init__.py -> build/lib/pinder/eval/clashes 2026-09-14T19:26:58,328 creating build/lib/pinder/eval/dockq 2026-09-14T19:26:58,329 copying src/pinder-eval/pinder/eval/dockq/biotite_dockq.py -> build/lib/pinder/eval/dockq 2026-09-14T19:26:58,331 copying src/pinder-eval/pinder/eval/dockq/metrics.py -> build/lib/pinder/eval/dockq 2026-09-14T19:26:58,334 copying src/pinder-eval/pinder/eval/dockq/__init__.py -> build/lib/pinder/eval/dockq 2026-09-14T19:26:58,335 copying src/pinder-eval/pinder/eval/dockq/method.py -> build/lib/pinder/eval/dockq 2026-09-14T19:26:58,338 copying src/pinder-eval/pinder/eval/dockq/unbound.py -> build/lib/pinder/eval/dockq 2026-09-14T19:26:58,341 creating build/lib/pinder/methods 2026-09-14T19:26:58,342 copying src/pinder-methods/pinder/methods/main.py -> build/lib/pinder/methods 2026-09-14T19:26:58,344 copying src/pinder-methods/pinder/methods/__init__.py -> build/lib/pinder/methods 2026-09-14T19:26:58,346 copying src/pinder-methods/pinder/methods/_version.py -> build/lib/pinder/methods 2026-09-14T19:26:58,348 creating build/lib/pinder/methods/preprocess 2026-09-14T19:26:58,349 copying src/pinder-methods/pinder/methods/preprocess/__init__.py -> build/lib/pinder/methods/preprocess 2026-09-14T19:26:58,351 creating build/lib/pinder/methods/run 2026-09-14T19:26:58,352 copying src/pinder-methods/pinder/methods/run/__init__.py -> build/lib/pinder/methods/run 2026-09-14T19:26:58,354 creating build/lib/pinder/methods/train 2026-09-14T19:26:58,355 copying src/pinder-methods/pinder/methods/train/__init__.py -> build/lib/pinder/methods/train 2026-09-14T19:26:58,357 creating build/lib/pinder/methods/run/frodock 2026-09-14T19:26:58,358 copying src/pinder-methods/pinder/methods/run/frodock/__init__.py -> build/lib/pinder/methods/run/frodock 2026-09-14T19:26:58,360 copying src/pinder-methods/pinder/methods/run/frodock/predict.py -> build/lib/pinder/methods/run/frodock 2026-09-14T19:26:58,363 creating build/lib/pinder/methods/run/patchdock 2026-09-14T19:26:58,364 copying src/pinder-methods/pinder/methods/run/patchdock/__init__.py -> build/lib/pinder/methods/run/patchdock 2026-09-14T19:26:58,365 copying src/pinder-methods/pinder/methods/run/patchdock/predict.py -> build/lib/pinder/methods/run/patchdock 2026-09-14T19:26:58,368 creating build/lib/pinder/methods/run/hdock 2026-09-14T19:26:58,369 copying src/pinder-methods/pinder/methods/run/hdock/__init__.py -> build/lib/pinder/methods/run/hdock 2026-09-14T19:26:58,370 copying src/pinder-methods/pinder/methods/run/hdock/predict.py -> build/lib/pinder/methods/run/hdock 2026-09-14T19:26:58,373 creating build/lib/pinder/methods/run/af2mm 2026-09-14T19:26:58,374 copying src/pinder-methods/pinder/methods/run/af2mm/__init__.py -> build/lib/pinder/methods/run/af2mm 2026-09-14T19:26:58,375 running egg_info 2026-09-14T19:26:58,393 writing pinder.egg-info/PKG-INFO 2026-09-14T19:26:58,409 writing dependency_links to pinder.egg-info/dependency_links.txt 2026-09-14T19:26:58,411 writing entry points to pinder.egg-info/entry_points.txt 2026-09-14T19:26:58,417 writing requirements to pinder.egg-info/requires.txt 2026-09-14T19:26:58,418 writing top-level names to pinder.egg-info/top_level.txt 2026-09-14T19:26:58,458 adding license file 'LICENSE' 2026-09-14T19:26:58,484 writing manifest file 'pinder.egg-info/SOURCES.txt' 2026-09-14T19:26:58,520 copying src/pinder-data/pinder/data/README.md -> build/lib/pinder/data 2026-09-14T19:26:58,523 copying src/pinder-methods/pinder/methods/README.md -> build/lib/pinder/methods 2026-09-14T19:26:58,549 installing to build/bdist.linux-armv7l/wheel 2026-09-14T19:26:58,549 running install 2026-09-14T19:26:58,572 running install_lib 2026-09-14T19:26:58,580 creating build/bdist.linux-armv7l/wheel 2026-09-14T19:26:58,582 creating build/bdist.linux-armv7l/wheel/pinder 2026-09-14T19:26:58,584 creating build/bdist.linux-armv7l/wheel/pinder/data 2026-09-14T19:26:58,585 copying build/lib/pinder/data/csv_utils.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,587 copying build/lib/pinder/data/rcsb_rsync.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,589 copying build/lib/pinder/data/find_transitive_hits.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,592 creating build/bdist.linux-armv7l/wheel/pinder/data/annotation 2026-09-14T19:26:58,593 copying build/lib/pinder/data/annotation/planarity.py -> build/bdist.linux-armv7l/wheel/./pinder/data/annotation 2026-09-14T19:26:58,595 copying build/lib/pinder/data/annotation/sabdab.py -> build/bdist.linux-armv7l/wheel/./pinder/data/annotation 2026-09-14T19:26:58,597 copying build/lib/pinder/data/annotation/interface_gaps.py -> build/bdist.linux-armv7l/wheel/./pinder/data/annotation 2026-09-14T19:26:58,599 copying build/lib/pinder/data/annotation/constants.py -> build/bdist.linux-armv7l/wheel/./pinder/data/annotation 2026-09-14T19:26:58,602 copying build/lib/pinder/data/annotation/detached_components.py -> build/bdist.linux-armv7l/wheel/./pinder/data/annotation 2026-09-14T19:26:58,603 copying build/lib/pinder/data/annotation/canonical_apo.py -> build/bdist.linux-armv7l/wheel/./pinder/data/annotation 2026-09-14T19:26:58,605 copying build/lib/pinder/data/annotation/graphql.py -> build/bdist.linux-armv7l/wheel/./pinder/data/annotation 2026-09-14T19:26:58,608 copying build/lib/pinder/data/annotation/contact_classification.py -> build/bdist.linux-armv7l/wheel/./pinder/data/annotation 2026-09-14T19:26:58,610 copying build/lib/pinder/data/annotation/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/data/annotation 2026-09-14T19:26:58,612 copying build/lib/pinder/data/annotation/elongation.py -> build/bdist.linux-armv7l/wheel/./pinder/data/annotation 2026-09-14T19:26:58,613 copying build/lib/pinder/data/README.md -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,616 copying build/lib/pinder/data/system.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,618 copying build/lib/pinder/data/run.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,620 copying build/lib/pinder/data/get_annotations.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,622 copying build/lib/pinder/data/alignment_utils.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,625 creating build/bdist.linux-armv7l/wheel/pinder/data/pipeline 2026-09-14T19:26:58,626 copying build/lib/pinder/data/pipeline/data_pipeline.py -> build/bdist.linux-armv7l/wheel/./pinder/data/pipeline 2026-09-14T19:26:58,629 copying build/lib/pinder/data/pipeline/constants.py -> build/bdist.linux-armv7l/wheel/./pinder/data/pipeline 2026-09-14T19:26:58,631 copying build/lib/pinder/data/pipeline/tasks.py -> build/bdist.linux-armv7l/wheel/./pinder/data/pipeline 2026-09-14T19:26:58,633 copying build/lib/pinder/data/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/data/pipeline 2026-09-14T19:26:58,634 copying build/lib/pinder/data/pipeline/cache.py -> build/bdist.linux-armv7l/wheel/./pinder/data/pipeline 2026-09-14T19:26:58,636 copying build/lib/pinder/data/pipeline/scatter.py -> build/bdist.linux-armv7l/wheel/./pinder/data/pipeline 2026-09-14T19:26:58,638 copying build/lib/pinder/data/foldseek_utils.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,641 copying build/lib/pinder/data/get_alignment_similarity.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,643 copying build/lib/pinder/data/get_test_set.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,645 copying build/lib/pinder/data/get_dimers.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,649 creating build/bdist.linux-armv7l/wheel/pinder/data/qc 2026-09-14T19:26:58,650 copying build/lib/pinder/data/qc/run.py -> build/bdist.linux-armv7l/wheel/./pinder/data/qc 2026-09-14T19:26:58,652 copying build/lib/pinder/data/qc/pfam_diversity.py -> build/bdist.linux-armv7l/wheel/./pinder/data/qc 2026-09-14T19:26:58,654 copying build/lib/pinder/data/qc/utils.py -> build/bdist.linux-armv7l/wheel/./pinder/data/qc 2026-09-14T19:26:58,656 copying build/lib/pinder/data/qc/similarity_check.py -> build/bdist.linux-armv7l/wheel/./pinder/data/qc 2026-09-14T19:26:58,659 copying build/lib/pinder/data/qc/annotation_check.py -> build/bdist.linux-armv7l/wheel/./pinder/data/qc 2026-09-14T19:26:58,661 copying build/lib/pinder/data/qc/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/data/qc 2026-09-14T19:26:58,663 copying build/lib/pinder/data/qc/ialign.py -> build/bdist.linux-armv7l/wheel/./pinder/data/qc 2026-09-14T19:26:58,665 copying build/lib/pinder/data/qc/uniprot_leakage.py -> build/bdist.linux-armv7l/wheel/./pinder/data/qc 2026-09-14T19:26:58,667 copying build/lib/pinder/data/get_clusters.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,669 copying build/lib/pinder/data/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,671 copying build/lib/pinder/data/get_splits.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,673 copying build/lib/pinder/data/get_data.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,676 copying build/lib/pinder/data/_version.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,679 creating build/bdist.linux-armv7l/wheel/pinder/data/plot 2026-09-14T19:26:58,680 copying build/lib/pinder/data/plot/leaderboards.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,682 copying build/lib/pinder/data/plot/run.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,684 copying build/lib/pinder/data/plot/plot.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,687 copying build/lib/pinder/data/plot/datasets.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,689 copying build/lib/pinder/data/plot/constants.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,691 copying build/lib/pinder/data/plot/leakage.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,694 copying build/lib/pinder/data/plot/figure_utils.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,695 copying build/lib/pinder/data/plot/difficulty.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,698 copying build/lib/pinder/data/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,699 copying build/lib/pinder/data/plot/validity.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,702 copying build/lib/pinder/data/plot/image.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,703 copying build/lib/pinder/data/plot/annotations.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,706 copying build/lib/pinder/data/plot/performance.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,708 copying build/lib/pinder/data/plot/categories.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,711 copying build/lib/pinder/data/plot/structure_case_studies.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,713 copying build/lib/pinder/data/plot/families.py -> build/bdist.linux-armv7l/wheel/./pinder/data/plot 2026-09-14T19:26:58,716 copying build/lib/pinder/data/graph_utils.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,718 copying build/lib/pinder/data/config.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,721 copying build/lib/pinder/data/apo_utils.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,724 copying build/lib/pinder/data/get_apo.py -> build/bdist.linux-armv7l/wheel/./pinder/data 2026-09-14T19:26:58,727 creating build/bdist.linux-armv7l/wheel/pinder/eval 2026-09-14T19:26:58,729 creating build/bdist.linux-armv7l/wheel/pinder/eval/clashes 2026-09-14T19:26:58,730 copying build/lib/pinder/eval/clashes/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/eval/clashes 2026-09-14T19:26:58,733 copying build/lib/pinder/eval/run.py -> build/bdist.linux-armv7l/wheel/./pinder/eval 2026-09-14T19:26:58,735 creating build/bdist.linux-armv7l/wheel/pinder/eval/dockq 2026-09-14T19:26:58,737 copying build/lib/pinder/eval/dockq/biotite_dockq.py -> build/bdist.linux-armv7l/wheel/./pinder/eval/dockq 2026-09-14T19:26:58,739 copying build/lib/pinder/eval/dockq/metrics.py -> build/bdist.linux-armv7l/wheel/./pinder/eval/dockq 2026-09-14T19:26:58,742 copying build/lib/pinder/eval/dockq/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/eval/dockq 2026-09-14T19:26:58,744 copying build/lib/pinder/eval/dockq/method.py -> build/bdist.linux-armv7l/wheel/./pinder/eval/dockq 2026-09-14T19:26:58,747 copying build/lib/pinder/eval/dockq/unbound.py -> build/bdist.linux-armv7l/wheel/./pinder/eval/dockq 2026-09-14T19:26:58,750 copying build/lib/pinder/eval/create_submission.py -> build/bdist.linux-armv7l/wheel/./pinder/eval 2026-09-14T19:26:58,752 copying build/lib/pinder/eval/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/eval 2026-09-14T19:26:58,754 copying build/lib/pinder/eval/_version.py -> build/bdist.linux-armv7l/wheel/./pinder/eval 2026-09-14T19:26:58,756 creating build/bdist.linux-armv7l/wheel/pinder/methods 2026-09-14T19:26:58,758 copying build/lib/pinder/methods/README.md -> build/bdist.linux-armv7l/wheel/./pinder/methods 2026-09-14T19:26:58,761 copying build/lib/pinder/methods/main.py -> build/bdist.linux-armv7l/wheel/./pinder/methods 2026-09-14T19:26:58,764 creating build/bdist.linux-armv7l/wheel/pinder/methods/preprocess 2026-09-14T19:26:58,765 copying build/lib/pinder/methods/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/methods/preprocess 2026-09-14T19:26:58,767 copying build/lib/pinder/methods/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/methods 2026-09-14T19:26:58,770 creating build/bdist.linux-armv7l/wheel/pinder/methods/run 2026-09-14T19:26:58,772 creating build/bdist.linux-armv7l/wheel/pinder/methods/run/frodock 2026-09-14T19:26:58,773 copying build/lib/pinder/methods/run/frodock/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/methods/run/frodock 2026-09-14T19:26:58,775 copying build/lib/pinder/methods/run/frodock/predict.py -> build/bdist.linux-armv7l/wheel/./pinder/methods/run/frodock 2026-09-14T19:26:58,778 creating build/bdist.linux-armv7l/wheel/pinder/methods/run/patchdock 2026-09-14T19:26:58,780 copying build/lib/pinder/methods/run/patchdock/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/methods/run/patchdock 2026-09-14T19:26:58,782 copying build/lib/pinder/methods/run/patchdock/predict.py -> build/bdist.linux-armv7l/wheel/./pinder/methods/run/patchdock 2026-09-14T19:26:58,785 creating build/bdist.linux-armv7l/wheel/pinder/methods/run/hdock 2026-09-14T19:26:58,786 copying build/lib/pinder/methods/run/hdock/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/methods/run/hdock 2026-09-14T19:26:58,788 copying build/lib/pinder/methods/run/hdock/predict.py -> build/bdist.linux-armv7l/wheel/./pinder/methods/run/hdock 2026-09-14T19:26:58,791 copying build/lib/pinder/methods/run/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/methods/run 2026-09-14T19:26:58,793 creating build/bdist.linux-armv7l/wheel/pinder/methods/run/af2mm 2026-09-14T19:26:58,794 copying build/lib/pinder/methods/run/af2mm/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/methods/run/af2mm 2026-09-14T19:26:58,796 copying build/lib/pinder/methods/_version.py -> build/bdist.linux-armv7l/wheel/./pinder/methods 2026-09-14T19:26:58,799 creating build/bdist.linux-armv7l/wheel/pinder/methods/train 2026-09-14T19:26:58,801 copying build/lib/pinder/methods/train/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/methods/train 2026-09-14T19:26:58,803 creating build/bdist.linux-armv7l/wheel/pinder/core 2026-09-14T19:26:58,805 creating build/bdist.linux-armv7l/wheel/pinder/core/loader 2026-09-14T19:26:58,807 copying build/lib/pinder/core/loader/structure.py -> build/bdist.linux-armv7l/wheel/./pinder/core/loader 2026-09-14T19:26:58,810 copying build/lib/pinder/core/loader/utils.py -> build/bdist.linux-armv7l/wheel/./pinder/core/loader 2026-09-14T19:26:58,812 copying build/lib/pinder/core/loader/filters.py -> build/bdist.linux-armv7l/wheel/./pinder/core/loader 2026-09-14T19:26:58,815 copying build/lib/pinder/core/loader/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/core/loader 2026-09-14T19:26:58,817 copying build/lib/pinder/core/loader/geodata.py -> build/bdist.linux-armv7l/wheel/./pinder/core/loader 2026-09-14T19:26:58,819 copying build/lib/pinder/core/loader/transforms.py -> build/bdist.linux-armv7l/wheel/./pinder/core/loader 2026-09-14T19:26:58,821 copying build/lib/pinder/core/loader/writer.py -> build/bdist.linux-armv7l/wheel/./pinder/core/loader 2026-09-14T19:26:58,824 copying build/lib/pinder/core/loader/loader.py -> build/bdist.linux-armv7l/wheel/./pinder/core/loader 2026-09-14T19:26:58,827 copying build/lib/pinder/core/loader/dataset.py -> build/bdist.linux-armv7l/wheel/./pinder/core/loader 2026-09-14T19:26:58,830 copying build/lib/pinder/core/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/core 2026-09-14T19:26:58,832 creating build/bdist.linux-armv7l/wheel/pinder/core/utils 2026-09-14T19:26:58,834 copying build/lib/pinder/core/utils/dataclass.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,836 copying build/lib/pinder/core/utils/process.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,839 copying build/lib/pinder/core/utils/timer.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,841 copying build/lib/pinder/core/utils/constants.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,844 copying build/lib/pinder/core/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,846 copying build/lib/pinder/core/utils/string.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,848 copying build/lib/pinder/core/utils/retry.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,851 copying build/lib/pinder/core/utils/paths.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,853 copying build/lib/pinder/core/utils/log.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,856 copying build/lib/pinder/core/utils/cloud.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,859 copying build/lib/pinder/core/utils/unbound.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,862 copying build/lib/pinder/core/utils/pdb_utils.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,864 copying build/lib/pinder/core/utils/dataset.py -> build/bdist.linux-armv7l/wheel/./pinder/core/utils 2026-09-14T19:26:58,867 copying build/lib/pinder/core/_version.py -> build/bdist.linux-armv7l/wheel/./pinder/core 2026-09-14T19:26:58,869 creating build/bdist.linux-armv7l/wheel/pinder/core/submit 2026-09-14T19:26:58,871 copying build/lib/pinder/core/submit/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/core/submit 2026-09-14T19:26:58,873 creating build/bdist.linux-armv7l/wheel/pinder/core/index 2026-09-14T19:26:58,875 copying build/lib/pinder/core/index/system.py -> build/bdist.linux-armv7l/wheel/./pinder/core/index 2026-09-14T19:26:58,878 copying build/lib/pinder/core/index/utils.py -> build/bdist.linux-armv7l/wheel/./pinder/core/index 2026-09-14T19:26:58,881 copying build/lib/pinder/core/index/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/core/index 2026-09-14T19:26:58,883 copying build/lib/pinder/core/index/id.py -> build/bdist.linux-armv7l/wheel/./pinder/core/index 2026-09-14T19:26:58,887 creating build/bdist.linux-armv7l/wheel/pinder/core/structure 2026-09-14T19:26:58,888 copying build/lib/pinder/core/structure/contacts.py -> build/bdist.linux-armv7l/wheel/./pinder/core/structure 2026-09-14T19:26:58,891 copying build/lib/pinder/core/structure/superimpose.py -> build/bdist.linux-armv7l/wheel/./pinder/core/structure 2026-09-14T19:26:58,894 copying build/lib/pinder/core/structure/atoms.py -> build/bdist.linux-armv7l/wheel/./pinder/core/structure 2026-09-14T19:26:58,898 copying build/lib/pinder/core/structure/surgery.py -> build/bdist.linux-armv7l/wheel/./pinder/core/structure 2026-09-14T19:26:58,900 copying build/lib/pinder/core/structure/__init__.py -> build/bdist.linux-armv7l/wheel/./pinder/core/structure 2026-09-14T19:26:58,902 copying build/lib/pinder/core/structure/models.py -> build/bdist.linux-armv7l/wheel/./pinder/core/structure 2026-09-14T19:26:58,904 running install_egg_info 2026-09-14T19:26:58,912 Copying pinder.egg-info to build/bdist.linux-armv7l/wheel/./pinder-0.6.0-py3.11.egg-info 2026-09-14T19:26:58,932 running install_scripts 2026-09-14T19:26:58,946 creating build/bdist.linux-armv7l/wheel/pinder-0.6.0.dist-info/WHEEL 2026-09-14T19:26:58,950 creating '/tmp/pip-wheel-ds82lmj4/.tmp-co1y61n9/pinder-0.6.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-09-14T19:26:58,952 adding 'pinder/core/__init__.py' 2026-09-14T19:26:58,954 adding 'pinder/core/_version.py' 2026-09-14T19:26:58,956 adding 'pinder/core/index/__init__.py' 2026-09-14T19:26:58,958 adding 'pinder/core/index/id.py' 2026-09-14T19:26:58,962 adding 'pinder/core/index/system.py' 2026-09-14T19:26:58,967 adding 'pinder/core/index/utils.py' 2026-09-14T19:26:58,969 adding 'pinder/core/loader/__init__.py' 2026-09-14T19:26:58,973 adding 'pinder/core/loader/dataset.py' 2026-09-14T19:26:58,975 adding 'pinder/core/loader/filters.py' 2026-09-14T19:26:58,977 adding 'pinder/core/loader/geodata.py' 2026-09-14T19:26:58,980 adding 'pinder/core/loader/loader.py' 2026-09-14T19:26:58,984 adding 'pinder/core/loader/structure.py' 2026-09-14T19:26:58,985 adding 'pinder/core/loader/transforms.py' 2026-09-14T19:26:58,986 adding 'pinder/core/loader/utils.py' 2026-09-14T19:26:58,988 adding 'pinder/core/loader/writer.py' 2026-09-14T19:26:58,989 adding 'pinder/core/structure/__init__.py' 2026-09-14T19:26:58,994 adding 'pinder/core/structure/atoms.py' 2026-09-14T19:26:58,996 adding 'pinder/core/structure/contacts.py' 2026-09-14T19:26:58,997 adding 'pinder/core/structure/models.py' 2026-09-14T19:26:58,999 adding 'pinder/core/structure/superimpose.py' 2026-09-14T19:26:59,001 adding 'pinder/core/structure/surgery.py' 2026-09-14T19:26:59,002 adding 'pinder/core/submit/__init__.py' 2026-09-14T19:26:59,004 adding 'pinder/core/utils/__init__.py' 2026-09-14T19:26:59,008 adding 'pinder/core/utils/cloud.py' 2026-09-14T19:26:59,011 adding 'pinder/core/utils/constants.py' 2026-09-14T19:26:59,012 adding 'pinder/core/utils/dataclass.py' 2026-09-14T19:26:59,014 adding 'pinder/core/utils/dataset.py' 2026-09-14T19:26:59,016 adding 'pinder/core/utils/log.py' 2026-09-14T19:26:59,017 adding 'pinder/core/utils/paths.py' 2026-09-14T19:26:59,019 adding 'pinder/core/utils/pdb_utils.py' 2026-09-14T19:26:59,020 adding 'pinder/core/utils/process.py' 2026-09-14T19:26:59,022 adding 'pinder/core/utils/retry.py' 2026-09-14T19:26:59,023 adding 'pinder/core/utils/string.py' 2026-09-14T19:26:59,024 adding 'pinder/core/utils/timer.py' 2026-09-14T19:26:59,026 adding 'pinder/core/utils/unbound.py' 2026-09-14T19:26:59,029 adding 'pinder/data/README.md' 2026-09-14T19:26:59,031 adding 'pinder/data/__init__.py' 2026-09-14T19:26:59,032 adding 'pinder/data/_version.py' 2026-09-14T19:26:59,035 adding 'pinder/data/alignment_utils.py' 2026-09-14T19:26:59,039 adding 'pinder/data/apo_utils.py' 2026-09-14T19:26:59,041 adding 'pinder/data/config.py' 2026-09-14T19:26:59,043 adding 'pinder/data/csv_utils.py' 2026-09-14T19:26:59,046 adding 'pinder/data/find_transitive_hits.py' 2026-09-14T19:26:59,049 adding 'pinder/data/foldseek_utils.py' 2026-09-14T19:26:59,052 adding 'pinder/data/get_alignment_similarity.py' 2026-09-14T19:26:59,054 adding 'pinder/data/get_annotations.py' 2026-09-14T19:26:59,058 adding 'pinder/data/get_apo.py' 2026-09-14T19:26:59,060 adding 'pinder/data/get_clusters.py' 2026-09-14T19:26:59,065 adding 'pinder/data/get_data.py' 2026-09-14T19:26:59,071 adding 'pinder/data/get_dimers.py' 2026-09-14T19:26:59,075 adding 'pinder/data/get_splits.py' 2026-09-14T19:26:59,078 adding 'pinder/data/get_test_set.py' 2026-09-14T19:26:59,080 adding 'pinder/data/graph_utils.py' 2026-09-14T19:26:59,082 adding 'pinder/data/rcsb_rsync.py' 2026-09-14T19:26:59,084 adding 'pinder/data/run.py' 2026-09-14T19:26:59,085 adding 'pinder/data/system.py' 2026-09-14T19:26:59,087 adding 'pinder/data/annotation/__init__.py' 2026-09-14T19:26:59,088 adding 'pinder/data/annotation/canonical_apo.py' 2026-09-14T19:26:59,090 adding 'pinder/data/annotation/constants.py' 2026-09-14T19:26:59,092 adding 'pinder/data/annotation/contact_classification.py' 2026-09-14T19:26:59,093 adding 'pinder/data/annotation/detached_components.py' 2026-09-14T19:26:59,094 adding 'pinder/data/annotation/elongation.py' 2026-09-14T19:26:59,097 adding 'pinder/data/annotation/graphql.py' 2026-09-14T19:26:59,098 adding 'pinder/data/annotation/interface_gaps.py' 2026-09-14T19:26:59,100 adding 'pinder/data/annotation/planarity.py' 2026-09-14T19:26:59,102 adding 'pinder/data/annotation/sabdab.py' 2026-09-14T19:26:59,104 adding 'pinder/data/pipeline/__init__.py' 2026-09-14T19:26:59,105 adding 'pinder/data/pipeline/cache.py' 2026-09-14T19:26:59,106 adding 'pinder/data/pipeline/constants.py' 2026-09-14T19:26:59,110 adding 'pinder/data/pipeline/data_pipeline.py' 2026-09-14T19:26:59,112 adding 'pinder/data/pipeline/scatter.py' 2026-09-14T19:26:59,113 adding 'pinder/data/pipeline/tasks.py' 2026-09-14T19:26:59,115 adding 'pinder/data/plot/__init__.py' 2026-09-14T19:26:59,117 adding 'pinder/data/plot/annotations.py' 2026-09-14T19:26:59,119 adding 'pinder/data/plot/categories.py' 2026-09-14T19:26:59,121 adding 'pinder/data/plot/constants.py' 2026-09-14T19:26:59,122 adding 'pinder/data/plot/datasets.py' 2026-09-14T19:26:59,124 adding 'pinder/data/plot/difficulty.py' 2026-09-14T19:26:59,126 adding 'pinder/data/plot/families.py' 2026-09-14T19:26:59,128 adding 'pinder/data/plot/figure_utils.py' 2026-09-14T19:26:59,129 adding 'pinder/data/plot/image.py' 2026-09-14T19:26:59,131 adding 'pinder/data/plot/leaderboards.py' 2026-09-14T19:26:59,133 adding 'pinder/data/plot/leakage.py' 2026-09-14T19:26:59,137 adding 'pinder/data/plot/performance.py' 2026-09-14T19:26:59,142 adding 'pinder/data/plot/plot.py' 2026-09-14T19:26:59,145 adding 'pinder/data/plot/run.py' 2026-09-14T19:26:59,148 adding 'pinder/data/plot/structure_case_studies.py' 2026-09-14T19:26:59,152 adding 'pinder/data/plot/validity.py' 2026-09-14T19:26:59,154 adding 'pinder/data/qc/__init__.py' 2026-09-14T19:26:59,159 adding 'pinder/data/qc/annotation_check.py' 2026-09-14T19:26:59,161 adding 'pinder/data/qc/ialign.py' 2026-09-14T19:26:59,165 adding 'pinder/data/qc/pfam_diversity.py' 2026-09-14T19:26:59,167 adding 'pinder/data/qc/run.py' 2026-09-14T19:26:59,171 adding 'pinder/data/qc/similarity_check.py' 2026-09-14T19:26:59,173 adding 'pinder/data/qc/uniprot_leakage.py' 2026-09-14T19:26:59,176 adding 'pinder/data/qc/utils.py' 2026-09-14T19:26:59,178 adding 'pinder/eval/__init__.py' 2026-09-14T19:26:59,180 adding 'pinder/eval/_version.py' 2026-09-14T19:26:59,182 adding 'pinder/eval/create_submission.py' 2026-09-14T19:26:59,184 adding 'pinder/eval/run.py' 2026-09-14T19:26:59,187 adding 'pinder/eval/clashes/__init__.py' 2026-09-14T19:26:59,189 adding 'pinder/eval/dockq/__init__.py' 2026-09-14T19:26:59,193 adding 'pinder/eval/dockq/biotite_dockq.py' 2026-09-14T19:26:59,199 adding 'pinder/eval/dockq/method.py' 2026-09-14T19:26:59,202 adding 'pinder/eval/dockq/metrics.py' 2026-09-14T19:26:59,205 adding 'pinder/eval/dockq/unbound.py' 2026-09-14T19:26:59,208 adding 'pinder/methods/README.md' 2026-09-14T19:26:59,210 adding 'pinder/methods/__init__.py' 2026-09-14T19:26:59,212 adding 'pinder/methods/_version.py' 2026-09-14T19:26:59,214 adding 'pinder/methods/main.py' 2026-09-14T19:26:59,216 adding 'pinder/methods/preprocess/__init__.py' 2026-09-14T19:26:59,219 adding 'pinder/methods/run/__init__.py' 2026-09-14T19:26:59,221 adding 'pinder/methods/run/af2mm/__init__.py' 2026-09-14T19:26:59,223 adding 'pinder/methods/run/frodock/__init__.py' 2026-09-14T19:26:59,226 adding 'pinder/methods/run/frodock/predict.py' 2026-09-14T19:26:59,228 adding 'pinder/methods/run/hdock/__init__.py' 2026-09-14T19:26:59,231 adding 'pinder/methods/run/hdock/predict.py' 2026-09-14T19:26:59,233 adding 'pinder/methods/run/patchdock/__init__.py' 2026-09-14T19:26:59,235 adding 'pinder/methods/run/patchdock/predict.py' 2026-09-14T19:26:59,238 adding 'pinder/methods/train/__init__.py' 2026-09-14T19:26:59,241 adding 'pinder-0.6.0.dist-info/licenses/LICENSE' 2026-09-14T19:26:59,249 adding 'pinder-0.6.0.dist-info/METADATA' 2026-09-14T19:26:59,250 adding 'pinder-0.6.0.dist-info/WHEEL' 2026-09-14T19:26:59,251 adding 'pinder-0.6.0.dist-info/entry_points.txt' 2026-09-14T19:26:59,252 adding 'pinder-0.6.0.dist-info/top_level.txt' 2026-09-14T19:26:59,254 adding 'pinder-0.6.0.dist-info/RECORD' 2026-09-14T19:26:59,266 removing build/bdist.linux-armv7l/wheel 2026-09-14T19:26:59,422 Building wheel for pinder (pyproject.toml): finished with status 'done' 2026-09-14T19:26:59,435 Created wheel for pinder: filename=pinder-0.6.0-py3-none-any.whl size=350644 sha256=08dc6fde38a4d0fe9bc193fd12d0ffbc034938b0269bf101b81dd40eec41f1e1 2026-09-14T19:26:59,436 Stored in directory: /tmp/pip-ephem-wheel-cache-52pf6pql/wheels/c5/5a/c1/2811049858c6d32326cb03535b2b5b3426dfc5d4aef70ebd9e 2026-09-14T19:26:59,465 Successfully built pinder 2026-09-14T19:26:59,482 Removed build tracker: '/tmp/pip-build-tracker-84lzjuo4'