2026-09-15T21:38:06,258 Created temporary directory: /tmp/pip-ephem-wheel-cache-sgigrgcj 2026-09-15T21:38:06,260 Created temporary directory: /tmp/pip-build-tracker-qna4m98r 2026-09-15T21:38:06,260 Initialized build tracking at /tmp/pip-build-tracker-qna4m98r 2026-09-15T21:38:06,261 Created build tracker: /tmp/pip-build-tracker-qna4m98r 2026-09-15T21:38:06,261 Entered build tracker: /tmp/pip-build-tracker-qna4m98r 2026-09-15T21:38:06,262 Created temporary directory: /tmp/pip-wheel-g3233jii 2026-09-15T21:38:06,265 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-15T21:38:06,267 Created temporary directory: /tmp/pip-ephem-wheel-cache-gmoeci1n 2026-09-15T21:38:06,289 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-15T21:38:06,293 2 location(s) to search for versions of isovar: 2026-09-15T21:38:06,293 * https://pypi.org/simple/isovar/ 2026-09-15T21:38:06,293 * https://www.piwheels.org/simple/isovar/ 2026-09-15T21:38:06,294 Fetching project page and analyzing links: https://pypi.org/simple/isovar/ 2026-09-15T21:38:06,294 Getting page https://pypi.org/simple/isovar/ 2026-09-15T21:38:06,296 Found index url https://pypi.org/simple 2026-09-15T21:38:06,454 Fetched page https://pypi.org/simple/isovar/ as application/vnd.pypi.simple.v1+json 2026-09-15T21:38:06,480 Found link https://files.pythonhosted.org/packages/b6/80/350ac9b97f7c872d7f2422a11bdb228a0286661fe2983884724735bff630/isovar-0.0.5.tar.gz (from https://pypi.org/simple/isovar/), 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2026-09-15T21:38:06,926 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.7.0-py3-none-any.whl#sha256=7bc474c6a53e930506940e34737ec9f85116cb86eed696db0ea545b5687c112a (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,927 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.6.1-py3-none-any.whl#sha256=a67ea479f0c73cc43fde0d35c8801f6ed3c81f062476dbaf39b5c410c0ba4b7d (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,928 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.6.0-py3-none-any.whl#sha256=37e7cace0e90e2ad432e97fbb4eea705b840edb66fd89ac70f50baf1f7f5d24b (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,928 Skipping link: No binaries permitted for isovar: 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2026-09-15T21:38:06,930 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.2.3-py3-none-any.whl#sha256=f12eae279834045a239b4762d1849c44173b29617a7858de5ead71a13d1f39cc (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,930 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.2.2-py3-none-any.whl#sha256=9b8ea377bb2e317603890ef935ddaca811af4337780d82fc56c33517a277182b (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,931 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.2.1-py3-none-any.whl#sha256=a027a8f2bb06d45c573a79bfec0ed8dce083f9120aec3e91482dc74401039e46 (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,932 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.2.0-py3-none-any.whl#sha256=ab7b0e6349d9a2c4802489d7cc7a867b23e3c2972f66283839629ac8f858cbce (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,932 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.1.5-py3-none-any.whl#sha256=ba9438ba3b8c2a1e59345d0c9fbfb207ded65feaf93b8d4dbf0972c7de89035c (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,933 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.1.3-py3-none-any.whl#sha256=c266801b0b080abcaf155870dfcd593ca904b27565767a27067326c819f0b15c (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,933 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.1.0-py3-none-any.whl#sha256=272454342ccc3da1af19007ad496e6d33165a4482470cef97f1e1bd4a898aee8 (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,934 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.0.6-py3-none-any.whl#sha256=04d869c163e51c11ed2d2bb125bffaf7e0c89cb17d906bcbc52914d1fa888e72 (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,935 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.0.5-py3-none-any.whl#sha256=57d3b95575aae8439f0aaa54ce12c1cb00b1bcb2e4fec582550cb0484903bcbc (from https://www.piwheels.org/simple/isovar/) 2026-09-15T21:38:06,935 Skipping link: not a file: https://www.piwheels.org/simple/isovar/ 2026-09-15T21:38:06,936 Skipping link: not a file: https://pypi.org/simple/isovar/ 2026-09-15T21:38:06,966 Given no hashes to check 1 links for project 'isovar': discarding no candidates 2026-09-15T21:38:06,984 Collecting isovar==1.11.0 2026-09-15T21:38:06,987 Created temporary directory: /tmp/pip-unpack-esnclcgv 2026-09-15T21:38:07,142 Downloading isovar-1.11.0.tar.gz (229 kB) 2026-09-15T21:38:07,539 Added isovar==1.11.0 from https://files.pythonhosted.org/packages/44/6f/b6f21846c51a6c925310685b7e71dd7ce2855cbd2b3f55933241bd3394e1/isovar-1.11.0.tar.gz to build tracker '/tmp/pip-build-tracker-qna4m98r' 2026-09-15T21:38:07,544 Created temporary directory: /tmp/pip-build-env-q4pq682e 2026-09-15T21:38:07,549 Installing build dependencies: started 2026-09-15T21:38:07,550 Running command pip subprocess to install build dependencies 2026-09-15T21:38:08,761 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-09-15T21:38:09,236 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-15T21:38:09,262 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-15T21:38:11,120 Collecting setuptools>=64 2026-09-15T21:38:11,121 Obtaining dependency information for setuptools>=64 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-09-15T21:38:11,134 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-09-15T21:38:11,381 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-15T21:38:11,462 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-15T21:38:14,234 Installing collected packages: setuptools 2026-09-15T21:38:16,489 Successfully installed setuptools-84.0.0 2026-09-15T21:38:16,761 Installing build dependencies: finished with status 'done' 2026-09-15T21:38:16,767 Getting requirements to build wheel: started 2026-09-15T21:38:16,769 Running command Getting requirements to build wheel 2026-09-15T21:38:17,487 /tmp/pip-build-env-q4pq682e/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-15T21:38:17,487 !! 2026-09-15T21:38:17,488 ******************************************************************************** 2026-09-15T21:38:17,489 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-15T21:38:17,490 License :: OSI Approved :: Apache Software License 2026-09-15T21:38:17,491 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-15T21:38:17,492 ******************************************************************************** 2026-09-15T21:38:17,493 !! 2026-09-15T21:38:17,493 dist._finalize_license_expression() 2026-09-15T21:38:17,494 /tmp/pip-build-env-q4pq682e/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-15T21:38:17,494 !! 2026-09-15T21:38:17,496 ******************************************************************************** 2026-09-15T21:38:17,496 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-15T21:38:17,497 License :: OSI Approved :: Apache Software License 2026-09-15T21:38:17,499 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-15T21:38:17,499 ******************************************************************************** 2026-09-15T21:38:17,500 !! 2026-09-15T21:38:17,501 self._finalize_license_expression() 2026-09-15T21:38:17,501 running egg_info 2026-09-15T21:38:17,505 writing isovar.egg-info/PKG-INFO 2026-09-15T21:38:17,509 writing dependency_links to isovar.egg-info/dependency_links.txt 2026-09-15T21:38:17,511 writing entry points to isovar.egg-info/entry_points.txt 2026-09-15T21:38:17,512 writing requirements to isovar.egg-info/requires.txt 2026-09-15T21:38:17,513 writing top-level names to isovar.egg-info/top_level.txt 2026-09-15T21:38:17,539 reading manifest file 'isovar.egg-info/SOURCES.txt' 2026-09-15T21:38:17,547 reading manifest template 'MANIFEST.in' 2026-09-15T21:38:17,549 adding license file 'LICENSE' 2026-09-15T21:38:17,557 writing manifest file 'isovar.egg-info/SOURCES.txt' 2026-09-15T21:38:17,655 Getting requirements to build wheel: finished with status 'done' 2026-09-15T21:38:17,659 Created temporary directory: /tmp/pip-modern-metadata-gwfbj11_ 2026-09-15T21:38:17,662 Preparing metadata (pyproject.toml): started 2026-09-15T21:38:17,663 Running command Preparing metadata (pyproject.toml) 2026-09-15T21:38:18,346 /tmp/pip-build-env-q4pq682e/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-15T21:38:18,347 !! 2026-09-15T21:38:18,348 ******************************************************************************** 2026-09-15T21:38:18,348 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-15T21:38:18,349 License :: OSI Approved :: Apache Software License 2026-09-15T21:38:18,350 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-15T21:38:18,351 ******************************************************************************** 2026-09-15T21:38:18,352 !! 2026-09-15T21:38:18,352 dist._finalize_license_expression() 2026-09-15T21:38:18,353 /tmp/pip-build-env-q4pq682e/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-15T21:38:18,354 !! 2026-09-15T21:38:18,355 ******************************************************************************** 2026-09-15T21:38:18,355 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-15T21:38:18,357 License :: OSI Approved :: Apache Software License 2026-09-15T21:38:18,358 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-15T21:38:18,358 ******************************************************************************** 2026-09-15T21:38:18,359 !! 2026-09-15T21:38:18,360 self._finalize_license_expression() 2026-09-15T21:38:18,360 running dist_info 2026-09-15T21:38:18,370 creating /tmp/pip-modern-metadata-gwfbj11_/isovar.egg-info 2026-09-15T21:38:18,372 writing /tmp/pip-modern-metadata-gwfbj11_/isovar.egg-info/PKG-INFO 2026-09-15T21:38:18,377 writing dependency_links to /tmp/pip-modern-metadata-gwfbj11_/isovar.egg-info/dependency_links.txt 2026-09-15T21:38:18,379 writing entry points to /tmp/pip-modern-metadata-gwfbj11_/isovar.egg-info/entry_points.txt 2026-09-15T21:38:18,381 writing requirements to /tmp/pip-modern-metadata-gwfbj11_/isovar.egg-info/requires.txt 2026-09-15T21:38:18,382 writing top-level names to /tmp/pip-modern-metadata-gwfbj11_/isovar.egg-info/top_level.txt 2026-09-15T21:38:18,384 writing manifest file '/tmp/pip-modern-metadata-gwfbj11_/isovar.egg-info/SOURCES.txt' 2026-09-15T21:38:18,408 reading manifest file '/tmp/pip-modern-metadata-gwfbj11_/isovar.egg-info/SOURCES.txt' 2026-09-15T21:38:18,410 reading manifest template 'MANIFEST.in' 2026-09-15T21:38:18,411 adding license file 'LICENSE' 2026-09-15T21:38:18,417 writing manifest file '/tmp/pip-modern-metadata-gwfbj11_/isovar.egg-info/SOURCES.txt' 2026-09-15T21:38:18,419 creating '/tmp/pip-modern-metadata-gwfbj11_/isovar-1.11.0.dist-info' 2026-09-15T21:38:18,547 Preparing metadata (pyproject.toml): finished with status 'done' 2026-09-15T21:38:18,553 Source in /tmp/pip-wheel-g3233jii/isovar_c6f53be18197483c9dde1abd8d82d7b0 has version 1.11.0, which satisfies requirement isovar==1.11.0 from https://files.pythonhosted.org/packages/44/6f/b6f21846c51a6c925310685b7e71dd7ce2855cbd2b3f55933241bd3394e1/isovar-1.11.0.tar.gz 2026-09-15T21:38:18,554 Removed isovar==1.11.0 from https://files.pythonhosted.org/packages/44/6f/b6f21846c51a6c925310685b7e71dd7ce2855cbd2b3f55933241bd3394e1/isovar-1.11.0.tar.gz from build tracker '/tmp/pip-build-tracker-qna4m98r' 2026-09-15T21:38:18,562 Created temporary directory: /tmp/pip-unpack-2csfg5fw 2026-09-15T21:38:18,562 Building wheels for collected packages: isovar 2026-09-15T21:38:18,567 Created temporary directory: /tmp/pip-wheel-h17ptm1o 2026-09-15T21:38:18,567 Destination directory: /tmp/pip-wheel-h17ptm1o 2026-09-15T21:38:18,569 Building wheel for isovar (pyproject.toml): started 2026-09-15T21:38:18,570 Running command Building wheel for isovar (pyproject.toml) 2026-09-15T21:38:19,203 /tmp/pip-build-env-q4pq682e/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-15T21:38:19,204 !! 2026-09-15T21:38:19,205 ******************************************************************************** 2026-09-15T21:38:19,205 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-15T21:38:19,206 License :: OSI Approved :: Apache Software License 2026-09-15T21:38:19,207 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-15T21:38:19,208 ******************************************************************************** 2026-09-15T21:38:19,209 !! 2026-09-15T21:38:19,210 dist._finalize_license_expression() 2026-09-15T21:38:19,210 /tmp/pip-build-env-q4pq682e/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-15T21:38:19,211 !! 2026-09-15T21:38:19,212 ******************************************************************************** 2026-09-15T21:38:19,213 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-15T21:38:19,214 License :: OSI Approved :: Apache Software License 2026-09-15T21:38:19,215 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-15T21:38:19,216 ******************************************************************************** 2026-09-15T21:38:19,217 !! 2026-09-15T21:38:19,217 self._finalize_license_expression() 2026-09-15T21:38:19,218 running bdist_wheel 2026-09-15T21:38:19,230 running build 2026-09-15T21:38:19,231 running build_py 2026-09-15T21:38:19,238 creating build/lib/isovar 2026-09-15T21:38:19,240 copying isovar/logging.py -> build/lib/isovar 2026-09-15T21:38:19,243 copying isovar/translation_helpers.py -> build/lib/isovar 2026-09-15T21:38:19,245 copying isovar/effect_prediction.py -> build/lib/isovar 2026-09-15T21:38:19,247 copying isovar/dataframe_helpers.py -> build/lib/isovar 2026-09-15T21:38:19,249 copying isovar/variant_orf_helpers.py -> build/lib/isovar 2026-09-15T21:38:19,252 copying isovar/alignment_score.py -> build/lib/isovar 2026-09-15T21:38:19,254 copying isovar/reference_context.py -> build/lib/isovar 2026-09-15T21:38:19,256 copying isovar/genetic_code.py -> build/lib/isovar 2026-09-15T21:38:19,258 copying isovar/mutant_transcript_source.py -> build/lib/isovar 2026-09-15T21:38:19,261 copying isovar/isovar_result.py -> build/lib/isovar 2026-09-15T21:38:19,263 copying isovar/dataframe_builder.py -> build/lib/isovar 2026-09-15T21:38:19,266 copying isovar/variant_sequence_creator.py -> build/lib/isovar 2026-09-15T21:38:19,268 copying isovar/transcript_compatibility.py -> build/lib/isovar 2026-09-15T21:38:19,270 copying isovar/read_collector.py -> build/lib/isovar 2026-09-15T21:38:19,273 copying isovar/read_evidence.py -> build/lib/isovar 2026-09-15T21:38:19,275 copying isovar/transcript_assembly_edit.py -> build/lib/isovar 2026-09-15T21:38:19,277 copying isovar/translation.py -> build/lib/isovar 2026-09-15T21:38:19,279 copying isovar/string_helpers.py -> build/lib/isovar 2026-09-15T21:38:19,281 copying isovar/reference_coding_sequence_key.py -> build/lib/isovar 2026-09-15T21:38:19,284 copying isovar/phase_group.py -> build/lib/isovar 2026-09-15T21:38:19,286 copying isovar/reference_context_helpers.py -> build/lib/isovar 2026-09-15T21:38:19,288 copying isovar/protein_sequence_creator.py -> build/lib/isovar 2026-09-15T21:38:19,290 copying isovar/dna.py -> build/lib/isovar 2026-09-15T21:38:19,292 copying isovar/locus_read.py -> build/lib/isovar 2026-09-15T21:38:19,294 copying isovar/filtering.py -> build/lib/isovar 2026-09-15T21:38:19,296 copying isovar/variant_orf.py -> build/lib/isovar 2026-09-15T21:38:19,299 copying isovar/__init__.py -> build/lib/isovar 2026-09-15T21:38:19,300 copying isovar/common.py -> build/lib/isovar 2026-09-15T21:38:19,302 copying isovar/translation_key.py -> build/lib/isovar 2026-09-15T21:38:19,304 copying isovar/protein_sequence.py -> build/lib/isovar 2026-09-15T21:38:19,307 copying isovar/variant_sequence_helpers.py -> build/lib/isovar 2026-09-15T21:38:19,309 copying isovar/variant_sequence.py -> build/lib/isovar 2026-09-15T21:38:19,311 copying isovar/default_parameters.py -> build/lib/isovar 2026-09-15T21:38:19,314 copying isovar/isovar_result_provider.py -> build/lib/isovar 2026-09-15T21:38:19,315 copying isovar/allele_read.py -> build/lib/isovar 2026-09-15T21:38:19,318 copying isovar/main.py -> build/lib/isovar 2026-09-15T21:38:19,320 copying isovar/transcript_edit_helpers.py -> build/lib/isovar 2026-09-15T21:38:19,322 copying isovar/read_phasing.py -> build/lib/isovar 2026-09-15T21:38:19,324 copying isovar/protein_sequence_helpers.py -> build/lib/isovar 2026-09-15T21:38:19,327 copying isovar/reference_sequence_key.py -> build/lib/isovar 2026-09-15T21:38:19,329 copying isovar/variant_helpers.py -> build/lib/isovar 2026-09-15T21:38:19,331 copying isovar/assembly.py -> build/lib/isovar 2026-09-15T21:38:19,334 copying isovar/allele_read_helpers.py -> build/lib/isovar 2026-09-15T21:38:19,336 copying isovar/phasing.py -> build/lib/isovar 2026-09-15T21:38:19,338 copying isovar/value_object.py -> build/lib/isovar 2026-09-15T21:38:19,341 creating build/lib/isovar/cli 2026-09-15T21:38:19,342 copying isovar/cli/rna_args.py -> build/lib/isovar/cli 2026-09-15T21:38:19,344 copying isovar/cli/variant_sequences_args.py -> build/lib/isovar/cli 2026-09-15T21:38:19,349 copying isovar/cli/isovar_translations.py -> build/lib/isovar/cli 2026-09-15T21:38:19,351 copying isovar/cli/main_args.py -> build/lib/isovar/cli 2026-09-15T21:38:19,353 copying isovar/cli/isovar_protein_sequences.py -> build/lib/isovar/cli 2026-09-15T21:38:19,355 copying isovar/cli/reference_context_args.py -> build/lib/isovar/cli 2026-09-15T21:38:19,357 copying isovar/cli/translation_args.py -> build/lib/isovar/cli 2026-09-15T21:38:19,359 copying isovar/cli/isovar_main.py -> build/lib/isovar/cli 2026-09-15T21:38:19,361 copying isovar/cli/isovar_reference_contexts.py -> build/lib/isovar/cli 2026-09-15T21:38:19,362 copying isovar/cli/isovar_allele_counts.py -> build/lib/isovar/cli 2026-09-15T21:38:19,364 copying isovar/cli/isovar_variant_reads.py -> build/lib/isovar/cli 2026-09-15T21:38:19,366 copying isovar/cli/__init__.py -> build/lib/isovar/cli 2026-09-15T21:38:19,368 copying isovar/cli/isovar_allele_reads.py -> build/lib/isovar/cli 2026-09-15T21:38:19,370 copying isovar/cli/isovar_variant_sequences.py -> build/lib/isovar/cli 2026-09-15T21:38:19,372 copying isovar/cli/filter_args.py -> build/lib/isovar/cli 2026-09-15T21:38:19,374 copying isovar/cli/output_args.py -> build/lib/isovar/cli 2026-09-15T21:38:19,375 copying isovar/cli/protein_sequence_args.py -> build/lib/isovar/cli 2026-09-15T21:38:19,377 running egg_info 2026-09-15T21:38:19,386 writing isovar.egg-info/PKG-INFO 2026-09-15T21:38:19,389 writing dependency_links to isovar.egg-info/dependency_links.txt 2026-09-15T21:38:19,391 writing entry points to isovar.egg-info/entry_points.txt 2026-09-15T21:38:19,393 writing requirements to isovar.egg-info/requires.txt 2026-09-15T21:38:19,394 writing top-level names to isovar.egg-info/top_level.txt 2026-09-15T21:38:19,408 reading manifest file 'isovar.egg-info/SOURCES.txt' 2026-09-15T21:38:19,419 reading manifest template 'MANIFEST.in' 2026-09-15T21:38:19,420 adding license file 'LICENSE' 2026-09-15T21:38:19,428 writing manifest file 'isovar.egg-info/SOURCES.txt' 2026-09-15T21:38:19,433 copying isovar/logging.conf -> build/lib/isovar 2026-09-15T21:38:19,446 installing to build/bdist.linux-armv7l/wheel 2026-09-15T21:38:19,447 running install 2026-09-15T21:38:19,469 running install_lib 2026-09-15T21:38:19,475 creating build/bdist.linux-armv7l/wheel 2026-09-15T21:38:19,477 creating build/bdist.linux-armv7l/wheel/isovar 2026-09-15T21:38:19,478 copying build/lib/isovar/logging.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,480 copying build/lib/isovar/translation_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,482 copying build/lib/isovar/effect_prediction.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,484 copying build/lib/isovar/dataframe_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,486 copying build/lib/isovar/variant_orf_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,489 copying build/lib/isovar/alignment_score.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,491 copying build/lib/isovar/reference_context.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,493 copying build/lib/isovar/genetic_code.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,495 copying build/lib/isovar/mutant_transcript_source.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,497 copying build/lib/isovar/isovar_result.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,499 copying build/lib/isovar/dataframe_builder.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,501 copying build/lib/isovar/variant_sequence_creator.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,504 copying build/lib/isovar/transcript_compatibility.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,506 copying build/lib/isovar/read_collector.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,509 copying build/lib/isovar/read_evidence.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,511 copying build/lib/isovar/transcript_assembly_edit.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,513 copying build/lib/isovar/translation.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,515 copying build/lib/isovar/string_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,517 copying build/lib/isovar/reference_coding_sequence_key.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,519 copying build/lib/isovar/phase_group.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,521 copying build/lib/isovar/reference_context_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,523 copying build/lib/isovar/protein_sequence_creator.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,526 copying build/lib/isovar/dna.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,528 copying build/lib/isovar/locus_read.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,530 copying build/lib/isovar/filtering.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,532 copying build/lib/isovar/variant_orf.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,534 copying build/lib/isovar/__init__.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,536 copying build/lib/isovar/common.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,538 copying build/lib/isovar/translation_key.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,540 copying build/lib/isovar/protein_sequence.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,542 copying build/lib/isovar/variant_sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,545 copying build/lib/isovar/variant_sequence.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,547 copying build/lib/isovar/default_parameters.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,549 copying build/lib/isovar/isovar_result_provider.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,551 copying build/lib/isovar/allele_read.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,553 copying build/lib/isovar/main.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,555 copying build/lib/isovar/logging.conf -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,558 creating build/bdist.linux-armv7l/wheel/isovar/cli 2026-09-15T21:38:19,559 copying build/lib/isovar/cli/rna_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,562 copying build/lib/isovar/cli/variant_sequences_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,564 copying build/lib/isovar/cli/isovar_translations.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,566 copying build/lib/isovar/cli/main_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,567 copying build/lib/isovar/cli/isovar_protein_sequences.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,569 copying build/lib/isovar/cli/reference_context_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,571 copying build/lib/isovar/cli/translation_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,573 copying build/lib/isovar/cli/isovar_main.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,575 copying build/lib/isovar/cli/isovar_reference_contexts.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,577 copying build/lib/isovar/cli/isovar_allele_counts.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,579 copying build/lib/isovar/cli/isovar_variant_reads.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,581 copying build/lib/isovar/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,583 copying build/lib/isovar/cli/isovar_allele_reads.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,585 copying build/lib/isovar/cli/isovar_variant_sequences.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,587 copying build/lib/isovar/cli/filter_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,589 copying build/lib/isovar/cli/output_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,591 copying build/lib/isovar/cli/protein_sequence_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-15T21:38:19,593 copying build/lib/isovar/transcript_edit_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,595 copying build/lib/isovar/read_phasing.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,597 copying build/lib/isovar/protein_sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,600 copying build/lib/isovar/reference_sequence_key.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,602 copying build/lib/isovar/variant_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,604 copying build/lib/isovar/assembly.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,606 copying build/lib/isovar/allele_read_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,608 copying build/lib/isovar/phasing.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,611 copying build/lib/isovar/value_object.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-15T21:38:19,612 running install_egg_info 2026-09-15T21:38:19,617 Copying isovar.egg-info to build/bdist.linux-armv7l/wheel/./isovar-1.11.0-py3.11.egg-info 2026-09-15T21:38:19,630 running install_scripts 2026-09-15T21:38:19,643 creating build/bdist.linux-armv7l/wheel/isovar-1.11.0.dist-info/WHEEL 2026-09-15T21:38:19,646 creating '/tmp/pip-wheel-h17ptm1o/.tmp-yf2n1bhn/isovar-1.11.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-09-15T21:38:19,649 adding 'isovar/__init__.py' 2026-09-15T21:38:19,650 adding 'isovar/alignment_score.py' 2026-09-15T21:38:19,652 adding 'isovar/allele_read.py' 2026-09-15T21:38:19,654 adding 'isovar/allele_read_helpers.py' 2026-09-15T21:38:19,656 adding 'isovar/assembly.py' 2026-09-15T21:38:19,658 adding 'isovar/common.py' 2026-09-15T21:38:19,660 adding 'isovar/dataframe_builder.py' 2026-09-15T21:38:19,662 adding 'isovar/dataframe_helpers.py' 2026-09-15T21:38:19,664 adding 'isovar/default_parameters.py' 2026-09-15T21:38:19,665 adding 'isovar/dna.py' 2026-09-15T21:38:19,667 adding 'isovar/effect_prediction.py' 2026-09-15T21:38:19,668 adding 'isovar/filtering.py' 2026-09-15T21:38:19,670 adding 'isovar/genetic_code.py' 2026-09-15T21:38:19,674 adding 'isovar/isovar_result.py' 2026-09-15T21:38:19,676 adding 'isovar/isovar_result_provider.py' 2026-09-15T21:38:19,677 adding 'isovar/locus_read.py' 2026-09-15T21:38:19,679 adding 'isovar/logging.conf' 2026-09-15T21:38:19,680 adding 'isovar/logging.py' 2026-09-15T21:38:19,681 adding 'isovar/main.py' 2026-09-15T21:38:19,683 adding 'isovar/mutant_transcript_source.py' 2026-09-15T21:38:19,684 adding 'isovar/phase_group.py' 2026-09-15T21:38:19,686 adding 'isovar/phasing.py' 2026-09-15T21:38:19,688 adding 'isovar/protein_sequence.py' 2026-09-15T21:38:19,692 adding 'isovar/protein_sequence_creator.py' 2026-09-15T21:38:19,693 adding 'isovar/protein_sequence_helpers.py' 2026-09-15T21:38:19,699 adding 'isovar/read_collector.py' 2026-09-15T21:38:19,701 adding 'isovar/read_evidence.py' 2026-09-15T21:38:19,702 adding 'isovar/read_phasing.py' 2026-09-15T21:38:19,704 adding 'isovar/reference_coding_sequence_key.py' 2026-09-15T21:38:19,706 adding 'isovar/reference_context.py' 2026-09-15T21:38:19,707 adding 'isovar/reference_context_helpers.py' 2026-09-15T21:38:19,709 adding 'isovar/reference_sequence_key.py' 2026-09-15T21:38:19,711 adding 'isovar/string_helpers.py' 2026-09-15T21:38:19,712 adding 'isovar/transcript_assembly_edit.py' 2026-09-15T21:38:19,713 adding 'isovar/transcript_compatibility.py' 2026-09-15T21:38:19,715 adding 'isovar/transcript_edit_helpers.py' 2026-09-15T21:38:19,717 adding 'isovar/translation.py' 2026-09-15T21:38:19,718 adding 'isovar/translation_helpers.py' 2026-09-15T21:38:19,719 adding 'isovar/translation_key.py' 2026-09-15T21:38:19,721 adding 'isovar/value_object.py' 2026-09-15T21:38:19,722 adding 'isovar/variant_helpers.py' 2026-09-15T21:38:19,724 adding 'isovar/variant_orf.py' 2026-09-15T21:38:19,726 adding 'isovar/variant_orf_helpers.py' 2026-09-15T21:38:19,728 adding 'isovar/variant_sequence.py' 2026-09-15T21:38:19,730 adding 'isovar/variant_sequence_creator.py' 2026-09-15T21:38:19,732 adding 'isovar/variant_sequence_helpers.py' 2026-09-15T21:38:19,734 adding 'isovar/cli/__init__.py' 2026-09-15T21:38:19,736 adding 'isovar/cli/filter_args.py' 2026-09-15T21:38:19,737 adding 'isovar/cli/isovar_allele_counts.py' 2026-09-15T21:38:19,738 adding 'isovar/cli/isovar_allele_reads.py' 2026-09-15T21:38:19,739 adding 'isovar/cli/isovar_main.py' 2026-09-15T21:38:19,741 adding 'isovar/cli/isovar_protein_sequences.py' 2026-09-15T21:38:19,742 adding 'isovar/cli/isovar_reference_contexts.py' 2026-09-15T21:38:19,743 adding 'isovar/cli/isovar_translations.py' 2026-09-15T21:38:19,745 adding 'isovar/cli/isovar_variant_reads.py' 2026-09-15T21:38:19,746 adding 'isovar/cli/isovar_variant_sequences.py' 2026-09-15T21:38:19,747 adding 'isovar/cli/main_args.py' 2026-09-15T21:38:19,749 adding 'isovar/cli/output_args.py' 2026-09-15T21:38:19,750 adding 'isovar/cli/protein_sequence_args.py' 2026-09-15T21:38:19,752 adding 'isovar/cli/reference_context_args.py' 2026-09-15T21:38:19,753 adding 'isovar/cli/rna_args.py' 2026-09-15T21:38:19,755 adding 'isovar/cli/translation_args.py' 2026-09-15T21:38:19,756 adding 'isovar/cli/variant_sequences_args.py' 2026-09-15T21:38:19,759 adding 'isovar-1.11.0.dist-info/licenses/LICENSE' 2026-09-15T21:38:19,762 adding 'isovar-1.11.0.dist-info/METADATA' 2026-09-15T21:38:19,763 adding 'isovar-1.11.0.dist-info/WHEEL' 2026-09-15T21:38:19,764 adding 'isovar-1.11.0.dist-info/entry_points.txt' 2026-09-15T21:38:19,765 adding 'isovar-1.11.0.dist-info/top_level.txt' 2026-09-15T21:38:19,767 adding 'isovar-1.11.0.dist-info/RECORD' 2026-09-15T21:38:19,770 removing build/bdist.linux-armv7l/wheel 2026-09-15T21:38:19,886 Building wheel for isovar (pyproject.toml): finished with status 'done' 2026-09-15T21:38:19,893 Created wheel for isovar: filename=isovar-1.11.0-py3-none-any.whl size=140335 sha256=a90d2fddbb8d935dc5555556fbf4725e4f007191aa44a42eecc2c80bf323ea61 2026-09-15T21:38:19,895 Stored in directory: /tmp/pip-ephem-wheel-cache-gmoeci1n/wheels/9b/86/2b/8ced80f405c0206a76be2faecb37be69c90017354b6ce94043 2026-09-15T21:38:19,910 Successfully built isovar 2026-09-15T21:38:19,917 Removed build tracker: '/tmp/pip-build-tracker-qna4m98r'