2026-09-18T12:51:56,126 Created temporary directory: /tmp/pip-ephem-wheel-cache-6qkmslzs 2026-09-18T12:51:56,128 Created temporary directory: /tmp/pip-build-tracker-_x6ducvc 2026-09-18T12:51:56,128 Initialized build tracking at /tmp/pip-build-tracker-_x6ducvc 2026-09-18T12:51:56,129 Created build tracker: /tmp/pip-build-tracker-_x6ducvc 2026-09-18T12:51:56,129 Entered build tracker: /tmp/pip-build-tracker-_x6ducvc 2026-09-18T12:51:56,130 Created temporary directory: /tmp/pip-wheel-kk1ck5vt 2026-09-18T12:51:56,133 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-18T12:51:56,135 Created temporary directory: /tmp/pip-ephem-wheel-cache-gi2xgdo5 2026-09-18T12:51:56,160 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-18T12:51:56,164 2 location(s) to search for versions of libsonata: 2026-09-18T12:51:56,164 * https://pypi.org/simple/libsonata/ 2026-09-18T12:51:56,164 * https://www.piwheels.org/simple/libsonata/ 2026-09-18T12:51:56,164 Fetching project page and analyzing links: https://pypi.org/simple/libsonata/ 2026-09-18T12:51:56,165 Getting page https://pypi.org/simple/libsonata/ 2026-09-18T12:51:56,167 Found index url https://pypi.org/simple 2026-09-18T12:51:56,450 Fetched page https://pypi.org/simple/libsonata/ as application/vnd.pypi.simple.v1+json 2026-09-18T12:51:56,557 Skipping link: No binaries permitted for libsonata: 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link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/43/35/2a6035c56587c469f566f58934e9862e84f7f2b57abf29addfef0cd6b28b/libsonata-0.0.2-cp27-cp27m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,565 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/be/54/2101e715781231ac29891c966d8f264bc28a9adbefe3ee2a3722cb611279/libsonata-0.0.2-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,565 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/31/9a/f730a6d76acb6cc3f63150e122b36d99e15689a9c3771fc2528219a68dfe/libsonata-0.0.2-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,566 Skipping link: No binaries permitted for libsonata: 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https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,568 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/aa/8e/1c4b7dcdc1fc9ef2e1af129ab8325cadee8905907857b345d3e7611caa7d/libsonata-0.0.2-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,569 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/ed/cb/6f09262c0f61e770bab0505f1799f65f2a1c1ba6239c7045d215fecd80cc/libsonata-0.0.2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,569 Found link https://files.pythonhosted.org/packages/e6/85/09b8effcbb7da55d80afa4b60eb09fbf9eaa13bd03ba7590afb495d454de/libsonata-0.0.2.tar.gz (from https://pypi.org/simple/libsonata/), version: 0.0.2 2026-09-18T12:51:56,570 Skipping link: No binaries permitted for libsonata: 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https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,572 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/b6/02/3261964c678e2ed05b467963d7e48812fef22dd12eac95e3c3e3b7ccbc1d/libsonata-0.0.3-cp34-cp34m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,574 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/43/63/2b949a52a8a05a2d72e2567e257bdb510a6bcb8b27140a6c4d83f20e72ac/libsonata-0.0.3-cp34-cp34m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,574 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/03/9b/9676d8a49705be8e3b9aa35513128ec581b1a231418bdadb98cb80f34f7d/libsonata-0.0.3-cp35-cp35m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,574 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/20/ca/5bcd62c475eb0c40892bf494517ff1400793c43247f473e5f4a89b1e3ab2/libsonata-0.0.3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,575 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/76/95/8d24395d8b4169a0379535c1494103b59a0dc889685bc17b2da11c9c048a/libsonata-0.0.3-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,575 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/a5/22/3a61e4853f3b52581c7833105c109f93707ff83f559e593259fadc7d0541/libsonata-0.0.3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,576 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/08/a0/baa1e4ee480d7e3b1f548ff6062a2a6bb2e7e62ea0872e2cc514f6da4f52/libsonata-0.0.3-cp37-cp37m-manylinux1_i686.whl (from 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https://files.pythonhosted.org/packages/2e/b5/b5af8ffcf0f8abf3119f8a6aa84133a0ead70d2e0f69822892af05ac2376/libsonata-0.1.0-cp27-cp27mu-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,579 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/8b/c0/2eb5dd03f008b08bab336f56c38811039c1af0a14e14e9d0736c0aec6575/libsonata-0.1.0-cp27-cp27mu-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,580 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/6a/45/3e842fcd598173f40b593e56c1ca213c68f99bc1b3343666e6a22bf19b32/libsonata-0.1.0-cp36-cp36m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,580 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/72/e1/72dc9ac956101522c4f14ac4996214b032967c81d5635acf7ed7a017af30/libsonata-0.1.0-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,581 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/d0/58/f74c17d6f0fef9444fbe68958159b4810745052fdca33c0a9decc5e94593/libsonata-0.1.0-cp37-cp37m-manylinux1_i686.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,582 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/3e/82/f3da097e0619d333731b2c6adb4e955eede0aabdb08a93bfc3911bbdbc67/libsonata-0.1.0-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/libsonata/) 2026-09-18T12:51:56,582 Found link https://files.pythonhosted.org/packages/04/45/8cab82e154b64a54df0e89682e5e01522028f293f520a052a69a2353f6de/libsonata-0.1.0.tar.gz (from https://pypi.org/simple/libsonata/), version: 0.1.0 2026-09-18T12:51:56,583 Skipping link: No binaries permitted for libsonata: 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https://files.pythonhosted.org/packages/d3/f8/6cca34aee901cf34c06f8c705797b9c3180ae930936771da43f3ab1af2a5/libsonata-0.2.1-cp315-cp315t-macosx_10_15_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-09-18T12:51:56,912 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/bf/8f/5d8bd6ca14c9a791833c56398cc2119d81231f2269899bb0fc3319ce1eb5/libsonata-0.2.1-cp315-cp315t-macosx_11_0_arm64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-09-18T12:51:56,913 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/b6/aa/5fd90e5c60483b5567daf30a4191639648ec1701ee5e3f4cfcb078528197/libsonata-0.2.1-cp315-cp315t-manylinux_2_28_aarch64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-09-18T12:51:56,913 Skipping link: No binaries permitted for libsonata: https://files.pythonhosted.org/packages/63/91/d054743c096cdfa4c45e453c102cf935f1981b0447c69ef1e45f98cc1c6d/libsonata-0.2.1-cp315-cp315t-manylinux_2_28_x86_64.whl (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9) 2026-09-18T12:51:56,914 Found link https://files.pythonhosted.org/packages/61/20/32592e0c507fc994059f16c2c79955245fbe6cf9b4be2f96a0a42345edc7/libsonata-0.2.1.tar.gz (from https://pypi.org/simple/libsonata/) (requires-python:>=3.9), version: 0.2.1 2026-09-18T12:51:56,915 Fetching project page and analyzing links: https://www.piwheels.org/simple/libsonata/ 2026-09-18T12:51:56,916 Getting page https://www.piwheels.org/simple/libsonata/ 2026-09-18T12:51:56,917 Found index url https://www.piwheels.org/simple 2026-09-18T12:51:57,381 Fetched page https://www.piwheels.org/simple/libsonata/ as text/html 2026-09-18T12:51:57,436 Skipping link: No binaries permitted for libsonata: 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https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp39-cp39-linux_armv6l.whl#sha256=fc1cc822ef384ad0e88e2719699879097bab54387b9521dc81432910da5d74b6 (from https://www.piwheels.org/simple/libsonata/) 2026-09-18T12:51:57,555 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp39-cp39-linux_armv7l.whl#sha256=fc1cc822ef384ad0e88e2719699879097bab54387b9521dc81432910da5d74b6 (from https://www.piwheels.org/simple/libsonata/) 2026-09-18T12:51:57,556 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp37-cp37m-linux_armv6l.whl#sha256=925b4b49068389e9077eecce0764b703c81b3e7be3fad084659f089d2ac9fbd9 (from https://www.piwheels.org/simple/libsonata/) 2026-09-18T12:51:57,556 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp37-cp37m-linux_armv7l.whl#sha256=925b4b49068389e9077eecce0764b703c81b3e7be3fad084659f089d2ac9fbd9 (from https://www.piwheels.org/simple/libsonata/) 2026-09-18T12:51:57,557 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp34-cp34m-linux_armv7l.whl#sha256=61fc7e05cf8d7d8748546aa9b11044f17bdc5f029ca2fe78e54c36a689ae0b25 (from https://www.piwheels.org/simple/libsonata/) 2026-09-18T12:51:57,557 Skipping link: No binaries permitted for libsonata: https://archive1.piwheels.org/simple/libsonata/libsonata-0.0.2-cp34-cp34m-linux_armv6l.whl#sha256=61fc7e05cf8d7d8748546aa9b11044f17bdc5f029ca2fe78e54c36a689ae0b25 (from https://www.piwheels.org/simple/libsonata/) 2026-09-18T12:51:57,558 Skipping link: not a file: https://www.piwheels.org/simple/libsonata/ 2026-09-18T12:51:57,559 Skipping link: not a file: https://pypi.org/simple/libsonata/ 2026-09-18T12:51:57,583 Given no hashes to check 1 links for project 'libsonata': discarding no candidates 2026-09-18T12:51:57,600 Collecting libsonata==0.2.1 2026-09-18T12:51:57,602 Created temporary directory: /tmp/pip-unpack-olwd1w60 2026-09-18T12:51:57,768 Downloading libsonata-0.2.1.tar.gz (2.5 MB) 2026-09-18T12:51:59,652 Added libsonata==0.2.1 from https://files.pythonhosted.org/packages/61/20/32592e0c507fc994059f16c2c79955245fbe6cf9b4be2f96a0a42345edc7/libsonata-0.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-_x6ducvc' 2026-09-18T12:51:59,657 Created temporary directory: /tmp/pip-build-env-mhxutgjg 2026-09-18T12:51:59,661 Installing build dependencies: started 2026-09-18T12:51:59,663 Running command pip subprocess to install build dependencies 2026-09-18T12:52:00,805 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-09-18T12:52:01,297 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-18T12:52:01,320 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-18T12:52:01,915 Collecting scikit-build-core 2026-09-18T12:52:01,916 Obtaining dependency information for scikit-build-core from https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-1.0.3-py3-none-any.whl.metadata 2026-09-18T12:52:01,935 Using cached https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-1.0.3-py3-none-any.whl.metadata (19 kB) 2026-09-18T12:52:01,948 Discarding https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-1.0.3-py3-none-any.whl#sha256=8285a37fce025fd7bd4eca7665836091dab95a4f9375660e1ffc3cf70dcb6ab2 (from https://www.piwheels.org/simple/scikit-build-core/) (requires-python:>=3.8): Requested scikit-build-core from https://www.piwheels.org/simple/scikit-build-core/scikit_build_core-1.0.3-py3-none-any.whl#sha256=8285a37fce025fd7bd4eca7665836091dab95a4f9375660e1ffc3cf70dcb6ab2 has inconsistent Name: expected 'scikit-build-core', but metadata has 'scikit_build_core' 2026-09-18T12:52:01,976 Using cached scikit_build_core-1.0.3-py3-none-any.whl (278 kB) 2026-09-18T12:52:02,369 Collecting setuptools_scm 2026-09-18T12:52:02,370 Obtaining dependency information for setuptools_scm from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.3-py3-none-any.whl.metadata 2026-09-18T12:52:02,386 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.3-py3-none-any.whl.metadata (6.7 kB) 2026-09-18T12:52:02,396 Discarding https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.3-py3-none-any.whl#sha256=f25971992492ebac8f8385274b2ebf3812b3eb9440ecfd8ff98a49517a3d02b1 (from https://www.piwheels.org/simple/setuptools-scm/) (requires-python:>=3.8): Requested setuptools_scm from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.2.3-py3-none-any.whl#sha256=f25971992492ebac8f8385274b2ebf3812b3eb9440ecfd8ff98a49517a3d02b1 has inconsistent Name: expected 'setuptools_scm', but metadata has 'setuptools-scm' 2026-09-18T12:52:02,421 Using cached setuptools_scm-10.2.3-py3-none-any.whl (29 kB) 2026-09-18T12:52:02,675 Collecting packaging>=23.2 2026-09-18T12:52:02,676 Obtaining dependency information for packaging>=23.2 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-09-18T12:52:02,691 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-09-18T12:52:02,820 Collecting pathspec>=0.12.0 2026-09-18T12:52:02,821 Obtaining dependency information for pathspec>=0.12.0 from https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl.metadata 2026-09-18T12:52:02,836 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl.metadata (14 kB) 2026-09-18T12:52:02,959 Collecting vcs-versioning<3,>=2.3.2.dev0 2026-09-18T12:52:02,960 Obtaining dependency information for vcs-versioning<3,>=2.3.2.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.4.1-py3-none-any.whl.metadata 2026-09-18T12:52:02,973 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.4.1-py3-none-any.whl.metadata (1.7 kB) 2026-09-18T12:52:04,512 Collecting setuptools 2026-09-18T12:52:04,513 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-09-18T12:52:04,529 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-09-18T12:52:04,790 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-18T12:52:04,837 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl (57 kB) 2026-09-18T12:52:04,861 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.4.1-py3-none-any.whl (122 kB) 2026-09-18T12:52:04,930 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-18T12:52:04,969 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-18T12:52:05,005 Using cached https://www.piwheels.org/simple/pathspec/pathspec-1.1.1-py3-none-any.whl (57 kB) 2026-09-18T12:52:05,034 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.4.1-py3-none-any.whl (122 kB) 2026-09-18T12:52:05,122 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-18T12:52:08,021 Installing collected packages: setuptools, pathspec, packaging, vcs-versioning, scikit-build-core, setuptools_scm 2026-09-18T12:52:11,522 Creating /tmp/pip-build-env-mhxutgjg/overlay/local/bin 2026-09-18T12:52:11,525 changing mode of /tmp/pip-build-env-mhxutgjg/overlay/local/bin/vcs-versioning to 755 2026-09-18T12:52:12,354 changing mode of /tmp/pip-build-env-mhxutgjg/overlay/local/bin/scikit-build to 755 2026-09-18T12:52:12,356 changing mode of /tmp/pip-build-env-mhxutgjg/overlay/local/bin/scikit-build-core to 755 2026-09-18T12:52:12,491 changing mode of /tmp/pip-build-env-mhxutgjg/overlay/local/bin/setuptools-scm to 755 2026-09-18T12:52:12,544 Successfully installed packaging-26.3 pathspec-1.1.1 scikit-build-core-1.0.3 setuptools-84.0.0 setuptools_scm-10.2.3 vcs-versioning-2.4.1 2026-09-18T12:52:12,854 Installing build dependencies: finished with status 'done' 2026-09-18T12:52:12,861 Getting requirements to build wheel: started 2026-09-18T12:52:12,862 Running command Getting requirements to build wheel 2026-09-18T12:52:13,569 Getting requirements to build wheel: finished with status 'done' 2026-09-18T12:52:13,581 Created temporary directory: /tmp/pip-modern-metadata-nu318nqe 2026-09-18T12:52:13,583 Preparing metadata (pyproject.toml): started 2026-09-18T12:52:13,585 Running command Preparing metadata (pyproject.toml) 2026-09-18T12:52:14,422 *** scikit-build-core 1.0.3 using CMake 3.25.1 (metadata_wheel) 2026-09-18T12:52:14,543 Preparing metadata (pyproject.toml): finished with status 'done' 2026-09-18T12:52:14,549 Source in /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650 has version 0.2.1, which satisfies requirement libsonata==0.2.1 from https://files.pythonhosted.org/packages/61/20/32592e0c507fc994059f16c2c79955245fbe6cf9b4be2f96a0a42345edc7/libsonata-0.2.1.tar.gz 2026-09-18T12:52:14,551 Removed libsonata==0.2.1 from https://files.pythonhosted.org/packages/61/20/32592e0c507fc994059f16c2c79955245fbe6cf9b4be2f96a0a42345edc7/libsonata-0.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-_x6ducvc' 2026-09-18T12:52:14,557 Created temporary directory: /tmp/pip-unpack-2_4aw7u7 2026-09-18T12:52:14,558 Building wheels for collected packages: libsonata 2026-09-18T12:52:14,562 Created temporary directory: /tmp/pip-wheel-mipgsqsw 2026-09-18T12:52:14,563 Destination directory: /tmp/pip-wheel-mipgsqsw 2026-09-18T12:52:14,565 Building wheel for libsonata (pyproject.toml): started 2026-09-18T12:52:14,566 Running command Building wheel for libsonata (pyproject.toml) 2026-09-18T12:52:15,376 *** scikit-build-core 1.0.3 using CMake 3.25.1 (wheel) 2026-09-18T12:52:15,396 *** Configuring CMake... 2026-09-18T12:52:15,502 loading initial cache file /tmp/tmpj96oajvp/build/CMakeInit.txt 2026-09-18T12:52:15,770 -- The C compiler identification is GNU 12.2.0 2026-09-18T12:52:16,070 -- The CXX compiler identification is GNU 12.2.0 2026-09-18T12:52:16,120 -- Detecting C compiler ABI info 2026-09-18T12:52:16,440 -- Detecting C compiler ABI info - done 2026-09-18T12:52:16,477 -- Check for working C compiler: /usr/bin/arm-linux-gnueabihf-gcc - skipped 2026-09-18T12:52:16,479 -- Detecting C compile features 2026-09-18T12:52:16,481 -- Detecting C compile features - done 2026-09-18T12:52:16,502 -- Detecting CXX compiler ABI info 2026-09-18T12:52:16,822 -- Detecting CXX compiler ABI info - done 2026-09-18T12:52:16,861 -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabihf-g++ - skipped 2026-09-18T12:52:16,862 -- Detecting CXX compile features 2026-09-18T12:52:16,865 -- Detecting CXX compile features - done 2026-09-18T12:52:18,088 -- Found HDF5: /usr/lib/arm-linux-gnueabihf/hdf5/serial/libhdf5.so;/usr/lib/arm-linux-gnueabihf/libcrypto.so;/usr/lib/arm-linux-gnueabihf/libcurl.so;/usr/lib/arm-linux-gnueabihf/libpthread.a;/usr/lib/arm-linux-gnueabihf/libsz.so;/usr/lib/arm-linux-gnueabihf/libz.so;/usr/lib/arm-linux-gnueabihf/libdl.a;/usr/lib/arm-linux-gnueabihf/libm.so (found version "1.10.8") 2026-09-18T12:52:18,116 -- {fmt} version: 11.0.2 2026-09-18T12:52:18,117 -- Build type: Release 2026-09-18T12:52:18,182 -- pybind11 v3.0.1 2026-09-18T12:52:21,242 -- Found Python: /usr/bin/python3 (found suitable version "3.11.2", minimum required is "3.8") found components: Interpreter Development.Module Development.Embed 2026-09-18T12:52:21,395 -- Performing Test HAS_FLTO_AUTO 2026-09-18T12:52:21,935 -- Performing Test HAS_FLTO_AUTO - Success 2026-09-18T12:52:21,942 -- Configuring done 2026-09-18T12:52:22,013 -- Generating done 2026-09-18T12:52:22,070 -- Build files have been written to: /tmp/tmpj96oajvp/build 2026-09-18T12:52:22,145 *** Building project with Ninja... 2026-09-18T12:52:24,165 [1/18] Building CXX object CMakeFiles/sonata.dir/src/common.cpp.o 2026-09-18T12:52:27,928 [2/18] Building CXX object CMakeFiles/sonata.dir/src/hdf5_mutex.cpp.o 2026-09-18T12:52:50,913 [3/18] Building CXX object CMakeFiles/sonata.dir/src/edge_index.cpp.o 2026-09-18T12:52:50,914 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2026-09-18T12:52:50,915 from /usr/include/c++/12/functional:64, 2026-09-18T12:52:50,916 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/population.h:15, 2026-09-18T12:52:50,917 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.h:12, 2026-09-18T12:52:50,918 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.cpp:10: 2026-09-18T12:52:50,919 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:52:50,920 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:52:50,921 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:52:50,922 | ^~~~~~~~~~~~~ 2026-09-18T12:52:50,923 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:52:50,924 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:52:50,925 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-09-18T12:52:50,926 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,927 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:52:50,928 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:52:50,928 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:52:50,929 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:52:50,930 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,932 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:52:50,933 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:52:50,934 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:52:50,935 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,936 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-09-18T12:52:50,937 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:50,938 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-09-18T12:52:50,939 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,940 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:52:50,941 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:50,942 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-09-18T12:52:50,944 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,944 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:50,954 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:52:50,955 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:50,956 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:52:50,956 | ^~~~~~~~~~~~~ 2026-09-18T12:52:50,957 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:52:50,958 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:50,959 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:52:50,960 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,961 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:50,962 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:50,963 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:52:50,964 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,965 In file included from /usr/include/c++/12/vector:70, 2026-09-18T12:52:50,966 from /usr/include/c++/12/functional:62: 2026-09-18T12:52:50,967 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:52:50,968 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:52:50,969 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:52:50,970 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,971 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:52:50,973 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:52:50,974 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:79:14: 2026-09-18T12:52:50,975 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:50,976 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:52:50,977 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,978 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:52:50,978 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,979 1939 | __comp); 2026-09-18T12:52:50,983 | ~~~~~~~ 2026-09-18T12:52:50,984 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:52:50,985 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:52:50,986 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:52:50,987 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:79:14: 2026-09-18T12:52:50,988 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:50,989 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:52:50,990 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,991 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:50,994 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:52:50,995 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:50,996 In file included from /usr/include/c++/12/vector:64: 2026-09-18T12:52:50,997 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:52:51,002 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:89:18: 2026-09-18T12:52:51,003 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:51,004 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:52:51,005 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:52:51,006 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:52:51,007 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:99:26: 2026-09-18T12:52:51,008 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:51,008 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:52:51,009 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:52:51,010 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:52:51,011 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:52:51,012 inlined from ‘bbp::sonata::Selection bbp::sonata::edge_index::resolve(const HighFive::Group&, const std::vector&, const bbp::sonata::Hdf5Reader&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.cpp:68:14: 2026-09-18T12:52:51,024 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:52:51,024 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:52:51,026 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:52:51,027 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:52:51,028 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:51,029 1939 | __comp); 2026-09-18T12:52:51,030 | ~~~~~~~ 2026-09-18T12:52:51,031 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:52:51,032 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:52:51,033 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:52:51,034 inlined from ‘bbp::sonata::Selection bbp::sonata::edge_index::resolve(const HighFive::Group&, const std::vector&, const bbp::sonata::Hdf5Reader&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.cpp:68:14: 2026-09-18T12:52:51,035 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:52:51,036 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:52:51,037 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:51,038 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:52:51,039 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:52:51,040 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:51,041 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:52:51,042 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:52:51,042 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:52:51,043 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:51,044 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:52:51,045 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:52:51,046 inlined from ‘std::unordered_map > > bbp::sonata::edge_index::{anonymous}::_groupNodeRanges(const std::vector&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.cpp:104:41, 2026-09-18T12:52:51,047 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.cpp:137:49: 2026-09-18T12:52:51,048 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:51,049 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:52:51,050 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:51,051 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:52:51,052 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:52:51,053 inlined from ‘std::unordered_map > > bbp::sonata::edge_index::{anonymous}::_groupNodeRanges(const std::vector&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.cpp:110:33, 2026-09-18T12:52:51,054 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.cpp:137:49: 2026-09-18T12:52:51,055 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:51,056 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:52:51,057 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:51,057 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:52:51,058 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:52:51,059 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.cpp:156:35: 2026-09-18T12:52:51,060 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:51,061 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:52:51,061 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:51,062 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:52:51,063 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:52:51,064 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.cpp:159:35: 2026-09-18T12:52:51,065 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:51,066 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:52:51,067 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:52:51,068 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:52:51,069 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:52:51,070 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2026-09-18T12:52:51,072 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:405:18, 2026-09-18T12:52:51,073 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-09-18T12:52:51,074 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = true; _II = array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-09-18T12:52:51,075 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = true; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-09-18T12:52:51,076 inlined from ‘_OI std::move(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:652:38, 2026-09-18T12:52:51,077 inlined from ‘void bbp::sonata::edge_index::{anonymous}::_writeIndexGroup(const std::vector&, uint64_t, HighFive::Group&, const std::string&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.cpp:161:22: 2026-09-18T12:52:51,078 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:52:51,079 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:52:51,080 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:18,815 [4/18] Building CXX object CMakeFiles/sonata.dir/src/hdf5_reader.cpp.o 2026-09-18T12:53:18,815 In file included from /usr/include/c++/12/functional:64, 2026-09-18T12:53:18,818 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/bits/../H5Utility.hpp:12, 2026-09-18T12:53:18,820 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/bits/H5Object_misc.hpp:14, 2026-09-18T12:53:18,821 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/H5Object.hpp:139, 2026-09-18T12:53:18,822 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/H5File.hpp:14, 2026-09-18T12:53:18,823 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/hdf5_reader.h:7, 2026-09-18T12:53:18,824 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/hdf5_reader.cpp:1: 2026-09-18T12:53:18,824 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-09-18T12:53:18,825 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,826 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-09-18T12:53:18,827 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:18,828 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:53:18,829 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,830 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-09-18T12:53:18,830 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:53:18,831 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,832 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-09-18T12:53:18,833 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:53:18,834 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,835 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:53:18,843 | ^~~~~~~~~~~~~ 2026-09-18T12:53:18,853 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:53:18,854 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,856 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:53:18,857 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:53:18,858 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,858 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,859 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:53:18,860 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:18,861 In file included from /usr/include/c++/12/vector:70, 2026-09-18T12:53:18,862 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/hdf5_reader.h:4: 2026-09-18T12:53:18,863 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:53:18,864 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:53:18,865 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:53:18,866 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:18,866 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:53:18,867 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:53:18,868 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:79:14: 2026-09-18T12:53:18,869 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,870 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:53:18,871 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:53:18,884 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:53:18,894 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:18,896 1939 | __comp); 2026-09-18T12:53:18,896 | ~~~~~~~ 2026-09-18T12:53:18,897 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:53:18,898 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:53:18,899 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:53:18,900 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:79:14: 2026-09-18T12:53:18,901 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,902 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:53:18,903 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:18,904 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,905 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:53:18,906 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:18,907 In file included from /usr/include/c++/12/vector:64: 2026-09-18T12:53:18,908 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:53:18,909 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:89:18: 2026-09-18T12:53:18,910 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,911 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:53:18,911 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:53:18,912 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:53:18,913 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:99:26: 2026-09-18T12:53:18,914 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:18,915 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:53:18,916 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:53:21,593 [5/18] Building CXX object CMakeFiles/sonata.dir/src/edges.cpp.o 2026-09-18T12:53:21,594 In file included from /usr/include/c++/12/functional:64, 2026-09-18T12:53:21,596 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/population.h:15, 2026-09-18T12:53:21,597 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edge_index.h:12, 2026-09-18T12:53:21,598 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edges.cpp:10: 2026-09-18T12:53:21,599 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-09-18T12:53:21,600 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,601 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-09-18T12:53:21,602 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:21,603 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:53:21,604 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,605 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-09-18T12:53:21,606 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:53:21,607 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,608 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-09-18T12:53:21,609 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:53:21,610 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,611 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:53:21,612 | ^~~~~~~~~~~~~ 2026-09-18T12:53:21,613 In file included from /usr/include/c++/12/vector:70, 2026-09-18T12:53:21,620 from /usr/include/c++/12/functional:62: 2026-09-18T12:53:21,623 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:53:21,624 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:53:21,625 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:53:21,626 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:21,627 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-09-18T12:53:21,628 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-09-18T12:53:21,629 In file included from /usr/include/c++/12/vector:64: 2026-09-18T12:53:21,630 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:53:21,631 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-09-18T12:53:21,633 inlined from ‘_OutputIterator std::__set_intersection(_InputIterator1, _InputIterator1, _InputIterator2, _InputIterator2, _OutputIterator, _Compare) [with _InputIterator1 = __gnu_cxx::__normal_iterator >; _InputIterator2 = __gnu_cxx::__normal_iterator >; _OutputIterator = back_insert_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:5224:16, 2026-09-18T12:53:21,634 inlined from ‘_OIter std::set_intersection(_IIter1, _IIter1, _IIter2, _IIter2, _OIter) [with _IIter1 = __gnu_cxx::__normal_iterator >; _IIter2 = __gnu_cxx::__normal_iterator >; _OIter = back_insert_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:5274:48, 2026-09-18T12:53:21,643 inlined from ‘bbp::sonata::Selection bbp::sonata::EdgePopulation::connectingEdges(const std::vector&, const std::vector&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/edges.cpp:99:21: 2026-09-18T12:53:21,654 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:21,654 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:53:21,655 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:53:21,656 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:53:21,657 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,657 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:53:21,658 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:53:21,659 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,660 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,661 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:53:21,662 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:21,663 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:53:21,664 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:53:21,665 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:79:14: 2026-09-18T12:53:21,666 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,667 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:53:21,668 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:53:21,669 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:53:21,670 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:21,671 1939 | __comp); 2026-09-18T12:53:21,684 | ~~~~~~~ 2026-09-18T12:53:21,694 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:53:21,695 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:53:21,696 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:53:21,696 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:79:14: 2026-09-18T12:53:21,697 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,698 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:53:21,699 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:21,700 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,701 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:53:21,702 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:21,703 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:53:21,704 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:89:18: 2026-09-18T12:53:21,705 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,706 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:53:21,707 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:53:21,708 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:53:21,709 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:99:26: 2026-09-18T12:53:21,710 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:21,711 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:53:21,712 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:53:30,846 [6/18] Building CXX object CMakeFiles/sonata.dir/src/electrode_reader.cpp.o 2026-09-18T12:53:30,847 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp: In function ‘std::vector bbp::sonata::{anonymous}::coalesceIOBlocks(const NodeLayout&, const std::vector&, size_t)’: 2026-09-18T12:53:30,848 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:172:29: warning: narrowing conversion of ‘(std::array::value_type)(& slices.bbp::sonata::{anonymous}::NodeLayout::ranges.std::vector >::operator[](((__gnu_cxx::__alloc_traits, unsigned int>::value_type)(& io_order)->std::vector::operator[](block_start))))->std::array::operator[](0)’ from ‘std::array::value_type’ {aka ‘long long unsigned int’} to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] 2026-09-18T12:53:30,849 172 | blocks.push_back({block_start, i, slices.ranges[io_order[block_start]][0], prev_end}); 2026-09-18T12:53:30,850 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,851 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:172:88: warning: narrowing conversion of ‘(long long unsigned int)prev_end’ from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] 2026-09-18T12:53:30,852 172 | blocks.push_back({block_start, i, slices.ranges[io_order[block_start]][0], prev_end}); 2026-09-18T12:53:30,853 | ^~~~~~~~ 2026-09-18T12:53:30,854 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:176:21: warning: narrowing conversion of ‘(std::array::value_type)(& slices.bbp::sonata::{anonymous}::NodeLayout::ranges.std::vector >::operator[](((__gnu_cxx::__alloc_traits, unsigned int>::value_type)(& io_order)->std::vector::operator[](block_start))))->std::array::operator[](0)’ from ‘std::array::value_type’ {aka ‘long long unsigned int’} to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] 2026-09-18T12:53:30,854 176 | blocks.push_back({block_start, 2026-09-18T12:53:30,856 | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ 2026-09-18T12:53:30,857 177 | io_order.size(), 2026-09-18T12:53:30,858 | ~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,859 178 | slices.ranges[io_order[block_start]][0], 2026-09-18T12:53:30,860 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,861 179 | slices.ranges[io_order.back()][1]}); 2026-09-18T12:53:30,862 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,863 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:176:21: warning: narrowing conversion of ‘(std::array::value_type)(& slices.bbp::sonata::{anonymous}::NodeLayout::ranges.std::vector >::operator[](((__gnu_cxx::__alloc_traits, unsigned int>::value_type)(& io_order)->std::vector::back())))->std::array::operator[](1)’ from ‘std::array::value_type’ {aka ‘long long unsigned int’} to ‘size_t’ {aka ‘unsigned int’} [-Wnarrowing] 2026-09-18T12:53:30,864 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2026-09-18T12:53:30,865 from /usr/include/c++/12/functional:64, 2026-09-18T12:53:30,866 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/bits/../H5Utility.hpp:12, 2026-09-18T12:53:30,867 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/bits/H5Object_misc.hpp:14, 2026-09-18T12:53:30,868 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/H5Object.hpp:139, 2026-09-18T12:53:30,870 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/H5File.hpp:14, 2026-09-18T12:53:30,870 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_canonical_selection.hpp:3, 2026-09-18T12:53:30,871 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/hdf5_reader.hpp:3, 2026-09-18T12:53:30,872 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:1: 2026-09-18T12:53:30,873 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&):: >]’: 2026-09-18T12:53:30,874 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:30,875 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:53:30,884 | ^~~~~~~~~~~~~ 2026-09-18T12:53:30,885 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&):: >]’: 2026-09-18T12:53:30,886 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:30,887 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:53:30,888 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,889 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:30,890 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:30,891 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:53:30,891 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,892 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&):: >]’: 2026-09-18T12:53:30,893 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:30,894 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-09-18T12:53:30,895 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,896 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:30,897 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, vector >&, std::vector >&, std::vector >&)::Entry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >&, std::vector >&, std::vector >&):: >]’: 2026-09-18T12:53:30,899 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, std::vector >&, std::vector >&, std::vector >&)::Entry> >’ changed in GCC 7.1 2026-09-18T12:53:30,900 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, std::vector >&, std::vector >&, std::vector >&)::Entry> >’ changed in GCC 7.1 2026-09-18T12:53:30,901 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, vector >&, std::vector >&, std::vector >&)::Entry> >; _Distance = int; _Tp = bbp::sonata::{anonymous}::discoverElectrodeMetadata(const HighFive::Group&, const std::string&, std::vector >&, std::vector >&, std::vector >&)::Entry; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >&, std::vector >&, std::vector >&):: >]’: 2026-09-18T12:53:30,902 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, std::vector >&, std::vector >&, std::vector >&)::Entry> >’ changed in GCC 7.1 2026-09-18T12:53:30,903 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:53:30,904 | ^~~~~~~~~~~~~ 2026-09-18T12:53:30,905 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, vector >&, std::vector >&, std::vector >&)::Entry> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >&, std::vector >&, std::vector >&):: >]’: 2026-09-18T12:53:30,906 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, std::vector >&, std::vector >&, std::vector >&)::Entry> >’ changed in GCC 7.1 2026-09-18T12:53:30,923 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:53:30,924 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,925 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, std::vector >&, std::vector >&, std::vector >&)::Entry> >’ changed in GCC 7.1 2026-09-18T12:53:30,926 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, std::vector >&, std::vector >&, std::vector >&)::Entry> >’ changed in GCC 7.1 2026-09-18T12:53:30,927 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:53:30,928 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,929 In file included from /usr/include/c++/12/vector:70, 2026-09-18T12:53:30,930 from /usr/include/c++/12/functional:62: 2026-09-18T12:53:30,931 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-09-18T12:53:30,932 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-09-18T12:53:30,933 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:53:30,934 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,934 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:53:30,935 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:53:30,936 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-09-18T12:53:30,937 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-09-18T12:53:30,938 In file included from /usr/include/c++/12/vector:64: 2026-09-18T12:53:30,939 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:53:30,940 inlined from ‘std::vector bbp::sonata::{anonymous}::resolveElectrodeSelection(const std::optional&, size_t)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:132:35, 2026-09-18T12:53:30,941 inlined from ‘bbp::sonata::ElectrodeScalingFactors bbp::sonata::ElectrodeReader::Population::get(const std::optional&, const std::optional&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:339:92: 2026-09-18T12:53:30,942 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:30,943 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:53:30,944 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:53:30,945 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:53:30,946 inlined from ‘void bbp::sonata::{anonymous}::NodeLayout::add(bbp::sonata::NodeID, bbp::sonata::Selection::Range)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:27:30, 2026-09-18T12:53:30,947 inlined from ‘void bbp::sonata::{anonymous}::NodeLayout::add(const std::vector&, const bbp::sonata::Selection::Ranges&, const std::vector&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:37:16, 2026-09-18T12:53:30,948 inlined from ‘bbp::sonata::{anonymous}::NodeLayout bbp::sonata::{anonymous}::resolveNodeSelection(const std::optional&, const std::vector&, const bbp::sonata::Selection::Ranges&, const std::vector&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:244:19, 2026-09-18T12:53:30,949 inlined from ‘bbp::sonata::ElectrodeScalingFactors bbp::sonata::ElectrodeReader::Population::get(const std::optional&, const std::optional&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:344:92: 2026-09-18T12:53:30,951 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:30,964 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:53:30,964 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,965 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array&}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:53:30,966 inlined from ‘void bbp::sonata::{anonymous}::NodeLayout::add(bbp::sonata::NodeID, bbp::sonata::Selection::Range)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:28:28, 2026-09-18T12:53:30,967 inlined from ‘void bbp::sonata::{anonymous}::NodeLayout::add(const std::vector&, const bbp::sonata::Selection::Ranges&, const std::vector&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:37:16, 2026-09-18T12:53:30,968 inlined from ‘bbp::sonata::{anonymous}::NodeLayout bbp::sonata::{anonymous}::resolveNodeSelection(const std::optional&, const std::vector&, const bbp::sonata::Selection::Ranges&, const std::vector&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:244:19, 2026-09-18T12:53:30,969 inlined from ‘bbp::sonata::ElectrodeScalingFactors bbp::sonata::ElectrodeReader::Population::get(const std::optional&, const std::optional&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:344:92: 2026-09-18T12:53:30,970 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:30,971 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:53:30,972 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,973 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:53:30,975 inlined from ‘void bbp::sonata::{anonymous}::NodeLayout::add(bbp::sonata::NodeID, bbp::sonata::Selection::Range)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:27:30, 2026-09-18T12:53:30,976 inlined from ‘bbp::sonata::{anonymous}::NodeLayout bbp::sonata::{anonymous}::resolveNodeSelection(const std::optional&, const std::vector&, const bbp::sonata::Selection::Ranges&, const std::vector&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:254:27, 2026-09-18T12:53:30,977 inlined from ‘bbp::sonata::ElectrodeScalingFactors bbp::sonata::ElectrodeReader::Population::get(const std::optional&, const std::optional&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:344:92: 2026-09-18T12:53:30,978 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:30,979 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:53:30,980 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,981 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array&}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:53:30,982 inlined from ‘void bbp::sonata::{anonymous}::NodeLayout::add(bbp::sonata::NodeID, bbp::sonata::Selection::Range)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:28:28, 2026-09-18T12:53:30,983 inlined from ‘bbp::sonata::{anonymous}::NodeLayout bbp::sonata::{anonymous}::resolveNodeSelection(const std::optional&, const std::vector&, const bbp::sonata::Selection::Ranges&, const std::vector&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:254:27, 2026-09-18T12:53:30,984 inlined from ‘bbp::sonata::ElectrodeScalingFactors bbp::sonata::ElectrodeReader::Population::get(const std::optional&, const std::optional&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:344:92: 2026-09-18T12:53:30,985 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:30,986 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:53:30,987 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,988 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:53:30,989 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:53:30,990 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:53:30,991 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,992 In file included from /usr/include/c++/12/set:60, 2026-09-18T12:53:30,993 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/population.h:17, 2026-09-18T12:53:30,994 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:7, 2026-09-18T12:53:30,994 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_canonical_selection.hpp:6: 2026-09-18T12:53:30,995 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::ElectrodeReader::Population}; _Key = std::__cxx11::basic_string; _Val = std::pair, bbp::sonata::ElectrodeReader::Population>; _KeyOfValue = std::_Select1st, bbp::sonata::ElectrodeReader::Population> >; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::ElectrodeReader::Population> >]’: 2026-09-18T12:53:30,996 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, bbp::sonata::ElectrodeReader::Population>, std::_Select1st, bbp::sonata::ElectrodeReader::Population> >, std::less >, std::allocator, bbp::sonata::ElectrodeReader::Population> > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:53:30,997 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-09-18T12:53:30,998 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:30,999 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, vector >&, std::vector >&, std::vector >&)::Entry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >&, std::vector >&, std::vector >&):: >]’, 2026-09-18T12:53:31,000 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, vector >&, std::vector >&, std::vector >&)::Entry> >; _Compare = bbp::sonata::{anonymous}::discoverElectrodeMetadata(const HighFive::Group&, const std::string&, std::vector >&, std::vector >&, std::vector >&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:53:31,001 inlined from ‘void bbp::sonata::{anonymous}::discoverElectrodeMetadata(const HighFive::Group&, const std::string&, std::vector >&, std::vector >&, std::vector >&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:106:14: 2026-09-18T12:53:31,002 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, std::vector >&, std::vector >&, std::vector >&)::Entry> >’ changed in GCC 7.1 2026-09-18T12:53:31,003 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:53:31,004 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:53:31,005 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:53:31,006 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:31,007 1939 | __comp); 2026-09-18T12:53:31,008 | ~~~~~~~ 2026-09-18T12:53:31,009 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, vector >&, std::vector >&, std::vector >&)::Entry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >&, std::vector >&, std::vector >&):: >]’, 2026-09-18T12:53:31,010 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, vector >&, std::vector >&, std::vector >&)::Entry> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >&, std::vector >&, std::vector >&):: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:53:31,011 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, vector >&, std::vector >&, std::vector >&)::Entry> >; _Compare = bbp::sonata::{anonymous}::discoverElectrodeMetadata(const HighFive::Group&, const std::string&, std::vector >&, std::vector >&, std::vector >&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:53:31,012 inlined from ‘void bbp::sonata::{anonymous}::discoverElectrodeMetadata(const HighFive::Group&, const std::string&, std::vector >&, std::vector >&, std::vector >&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:106:14: 2026-09-18T12:53:31,013 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, std::vector >&, std::vector >&, std::vector >&)::Entry> >’ changed in GCC 7.1 2026-09-18T12:53:31,014 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:53:31,015 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:31,016 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >&, std::vector >&, std::vector >&)::Entry*, std::vector >&, std::vector >&, std::vector >&)::Entry> >’ changed in GCC 7.1 2026-09-18T12:53:31,017 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:53:31,019 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:31,020 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:53:31,020 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:53:31,022 inlined from ‘bbp::sonata::ElectrodeReader::Population::Population(const HighFive::File&, const std::string&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:288:31: 2026-09-18T12:53:31,023 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:53:31,024 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:53:31,025 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:31,026 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&):: >]’, 2026-09-18T12:53:31,027 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::{anonymous}::buildSortedIndex(const std::vector&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:53:31,029 inlined from ‘std::vector bbp::sonata::{anonymous}::buildSortedIndex(const std::vector&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:54:14, 2026-09-18T12:53:31,030 inlined from ‘bbp::sonata::ElectrodeReader::Population::Population(const HighFive::File&, const std::string&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:291:35: 2026-09-18T12:53:31,031 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:31,032 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:53:31,033 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:53:31,034 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:53:31,044 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:31,044 1939 | __comp); 2026-09-18T12:53:31,045 | ~~~~~~~ 2026-09-18T12:53:31,046 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&):: >]’, 2026-09-18T12:53:31,047 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter&):: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:53:31,048 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::{anonymous}::buildSortedIndex(const std::vector&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:53:31,049 inlined from ‘std::vector bbp::sonata::{anonymous}::buildSortedIndex(const std::vector&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:54:14, 2026-09-18T12:53:31,050 inlined from ‘bbp::sonata::ElectrodeReader::Population::Population(const HighFive::File&, const std::string&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:291:35: 2026-09-18T12:53:31,051 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:31,052 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:53:31,053 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:31,054 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:53:31,055 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:53:31,056 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:53:31,057 In file included from /usr/include/c++/12/map:61, 2026-09-18T12:53:31,058 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/electrode_reader.h:4, 2026-09-18T12:53:31,059 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:3: 2026-09-18T12:53:31,060 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::ElectrodeReader::Population}; _Key = std::__cxx11::basic_string; _Tp = bbp::sonata::ElectrodeReader::Population; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::ElectrodeReader::Population> >]’, 2026-09-18T12:53:31,061 inlined from ‘std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::ElectrodeReader::Population}; _Key = std::__cxx11::basic_string; _Tp = bbp::sonata::ElectrodeReader::Population; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::ElectrodeReader::Population> >]’ at /usr/include/c++/12/bits/stl_map.h:599:22, 2026-09-18T12:53:31,063 inlined from ‘const bbp::sonata::ElectrodeReader::Population& bbp::sonata::ElectrodeReader::openPopulation(const std::string&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/electrode_reader.cpp:420:29: 2026-09-18T12:53:31,063 /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map, bbp::sonata::ElectrodeReader::Population>::const_iterator’ {aka ‘std::_Rb_tree, std::pair, bbp::sonata::ElectrodeReader::Population>, std::_Select1st, bbp::sonata::ElectrodeReader::Population> >, std::less >, std::allocator, bbp::sonata::ElectrodeReader::Population> > >::const_iterator’} changed in GCC 7.1 2026-09-18T12:53:31,064 638 | return _M_t._M_emplace_hint_unique(__pos, 2026-09-18T12:53:31,065 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2026-09-18T12:53:31,066 639 | std::forward<_Args>(__args)...); 2026-09-18T12:53:31,067 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,093 [7/18] Building CXX object CMakeFiles/sonata.dir/src/compartment_sets.cpp.o 2026-09-18T12:54:09,094 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2026-09-18T12:54:09,095 from /usr/include/c++/12/algorithm:61, 2026-09-18T12:54:09,096 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:12, 2026-09-18T12:54:09,097 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/compartment_sets.cpp:4: 2026-09-18T12:54:09,098 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:09,099 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,100 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:54:09,101 | ^~~~~~~~~~~~~ 2026-09-18T12:54:09,102 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:09,103 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,104 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-09-18T12:54:09,105 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,106 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,107 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:09,108 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,108 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:54:09,109 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,110 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,111 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,114 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:54:09,123 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,124 In file included from /usr/include/c++/12/vector:70, 2026-09-18T12:54:09,125 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:16: 2026-09-18T12:54:09,126 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {bbp::sonata::CompartmentLocation}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’: 2026-09-18T12:54:09,127 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-09-18T12:54:09,128 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:54:09,129 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,130 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-09-18T12:54:09,131 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-09-18T12:54:09,132 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const bbp::sonata::CompartmentLocation&}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’: 2026-09-18T12:54:09,133 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-09-18T12:54:09,134 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const bbp::sonata::CompartmentLocation&}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’, 2026-09-18T12:54:09,135 inlined from ‘std::unique_ptr bbp::sonata::detail::CompartmentSet::filter(const bbp::sonata::Selection&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/compartment_sets.cpp:256:38, 2026-09-18T12:54:09,136 inlined from ‘bbp::sonata::CompartmentSet bbp::sonata::CompartmentSet::filter(const bbp::sonata::Selection&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/compartment_sets.cpp:474:40: 2026-09-18T12:54:09,137 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,138 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:09,139 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,140 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:54:09,141 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:54:09,141 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:54:09,143 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,144 In file included from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/hdf5_reader.h:6, 2026-09-18T12:54:09,145 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/population.h:22, 2026-09-18T12:54:09,147 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:18: 2026-09-18T12:54:09,163 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’: 2026-09-18T12:54:09,164 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:144:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,166 144 | Selection Selection::fromValues(Iterator first, Iterator last) { 2026-09-18T12:54:09,167 | ^~~~~~~~~ 2026-09-18T12:54:09,167 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:144:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,168 In file included from /usr/include/c++/12/vector:64: 2026-09-18T12:54:09,169 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:09,170 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:154:33: 2026-09-18T12:54:09,171 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:09,172 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:09,173 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:09,174 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:09,175 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:163:25: 2026-09-18T12:54:09,176 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:09,177 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:09,178 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:09,179 In file included from /usr/include/c++/12/set:60, 2026-09-18T12:54:09,180 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:14: 2026-09-18T12:54:09,180 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’: 2026-09-18T12:54:09,181 /usr/include/c++/12/bits/stl_tree.h:2209:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:09,182 2209 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-09-18T12:54:09,183 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,184 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’: 2026-09-18T12:54:09,185 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:09,186 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-09-18T12:54:09,187 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,188 In file included from /usr/include/c++/12/map:61, 2026-09-18T12:54:09,189 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/nlohmann/nlohmann/json.hpp:175, 2026-09-18T12:54:09,190 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:19: 2026-09-18T12:54:09,191 /usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_12_0::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’: 2026-09-18T12:54:09,191 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:09,192 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-09-18T12:54:09,193 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,194 512 | std::tuple(__k), 2026-09-18T12:54:09,195 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,196 513 | std::tuple<>()); 2026-09-18T12:54:09,197 | ~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,198 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_12_0::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’, 2026-09-18T12:54:09,199 inlined from ‘bool nlohmann::json_abi_v3_12_0::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_12_0::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_12_0::detail::input_stream_adapter]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/nlohmann/nlohmann/json.hpp:9236:83: 2026-09-18T12:54:09,200 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:09,201 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-09-18T12:54:09,202 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,203 512 | std::tuple(__k), 2026-09-18T12:54:09,204 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,205 513 | std::tuple<>()); 2026-09-18T12:54:09,206 | ~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,207 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_12_0::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’, 2026-09-18T12:54:09,208 inlined from ‘bool nlohmann::json_abi_v3_12_0::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_12_0::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_12_0::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/nlohmann/nlohmann/json.hpp:9236:83: 2026-09-18T12:54:09,209 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:09,210 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-09-18T12:54:09,211 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,211 512 | std::tuple(__k), 2026-09-18T12:54:09,223 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,224 513 | std::tuple<>()); 2026-09-18T12:54:09,226 | ~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,227 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:09,227 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/compartment_sets.cpp:219:33: 2026-09-18T12:54:09,228 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,229 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:09,230 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:09,231 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:54:09,232 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:54:09,233 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/compartment_sets.cpp:222:13: 2026-09-18T12:54:09,234 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,235 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:54:09,236 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,237 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:54:09,238 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,239 1939 | __comp); 2026-09-18T12:54:09,240 | ~~~~~~~ 2026-09-18T12:54:09,241 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:54:09,242 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:54:09,243 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:54:09,244 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/compartment_sets.cpp:222:13: 2026-09-18T12:54:09,244 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,245 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:54:09,246 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,247 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,248 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:54:09,249 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:09,250 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/compartment_sets.cpp: In member function ‘bbp::sonata::Selection bbp::sonata::detail::CompartmentSet::nodeIds() const’: 2026-09-18T12:54:09,251 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/compartment_sets.cpp:223:66: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,252 223 | return Selection::fromValues(result.begin(), result.end()); 2026-09-18T12:54:09,253 | ^ 2026-09-18T12:54:09,254 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {bbp::sonata::CompartmentLocation}; _Tp = bbp::sonata::CompartmentLocation; _Alloc = std::allocator]’, 2026-09-18T12:54:09,255 inlined from ‘bbp::sonata::detail::CompartmentSet::CompartmentSet(const nlohmann::json_abi_v3_12_0::json&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/compartment_sets.cpp:155:48: 2026-09-18T12:54:09,256 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:09,257 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:09,258 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,401 [8/18] Building CXX object CMakeFiles/sonata.dir/src/node_sets.cpp.o 2026-09-18T12:54:44,402 In file included from /usr/include/c++/12/vector:70, 2026-09-18T12:54:44,403 from /usr/include/c++/12/functional:62, 2026-09-18T12:54:44,404 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/nlohmann/nlohmann/json.hpp:23, 2026-09-18T12:54:44,405 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/node_sets.cpp:10: 2026-09-18T12:54:44,406 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’: 2026-09-18T12:54:44,407 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:54:44,408 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:54:44,408 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,409 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:54:44,410 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:54:44,411 In file included from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/hdf5_reader.h:6, 2026-09-18T12:54:44,412 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/population.h:22, 2026-09-18T12:54:44,413 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:18, 2026-09-18T12:54:44,414 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/node_sets.cpp:13: 2026-09-18T12:54:44,416 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’: 2026-09-18T12:54:44,417 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:144:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:44,418 144 | Selection Selection::fromValues(Iterator first, Iterator last) { 2026-09-18T12:54:44,419 | ^~~~~~~~~ 2026-09-18T12:54:44,420 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:144:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:44,421 In file included from /usr/include/c++/12/vector:64: 2026-09-18T12:54:44,422 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:44,423 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:154:33: 2026-09-18T12:54:44,424 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:44,425 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:44,434 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:44,445 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:44,446 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:163:25: 2026-09-18T12:54:44,446 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:44,447 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:44,448 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:44,449 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/node_sets.cpp: In member function ‘virtual bbp::sonata::Selection bbp::sonata::detail::NodeSetBasicNodeIds::materialize(const bbp::sonata::detail::NodeSets&, const bbp::sonata::NodePopulation&) const’: 2026-09-18T12:54:44,450 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/node_sets.cpp:236:54: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:44,451 236 | return np.selectAll() & Selection::fromValues(values_.begin(), values_.end()); 2026-09-18T12:54:44,451 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,452 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-09-18T12:54:44,453 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-09-18T12:54:44,454 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:54:44,455 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,456 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long int}; _Tp = long long int; _Alloc = std::allocator]’, 2026-09-18T12:54:44,457 inlined from ‘bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/node_sets.cpp:523:36: 2026-09-18T12:54:44,458 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:44,459 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:44,460 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,461 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:44,462 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:54:44,463 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector]’ at /usr/include/c++/12/bits/stl_iterator.h:743:22, 2026-09-18T12:54:44,464 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = __gnu_cxx::__normal_iterator > >; _OIter = back_insert_iterator >; _UnaryOperation = bbp::sonata::detail::_dispatch_node(const std::string&, const json&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12, 2026-09-18T12:54:44,465 inlined from ‘bbp::sonata::detail::NodeSetRulePtr bbp::sonata::detail::_dispatch_node(const std::string&, const json&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/node_sets.cpp:528:31: 2026-09-18T12:54:44,466 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:44,467 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:44,468 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,468 In file included from /usr/include/c++/12/map:60, 2026-09-18T12:54:44,469 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/nlohmann/nlohmann/json.hpp:175: 2026-09-18T12:54:44,470 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’: 2026-09-18T12:54:44,471 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:44,472 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-09-18T12:54:44,473 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,474 In file included from /usr/include/c++/12/map:61: 2026-09-18T12:54:44,475 /usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_12_0::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’: 2026-09-18T12:54:44,476 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:44,477 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-09-18T12:54:44,478 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,479 512 | std::tuple(__k), 2026-09-18T12:54:44,480 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,481 513 | std::tuple<>()); 2026-09-18T12:54:44,481 | ~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,482 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_12_0::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’, 2026-09-18T12:54:44,483 inlined from ‘bool nlohmann::json_abi_v3_12_0::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_12_0::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_12_0::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/nlohmann/nlohmann/json.hpp:9236:83: 2026-09-18T12:54:44,484 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:44,485 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-09-18T12:54:44,494 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,494 512 | std::tuple(__k), 2026-09-18T12:54:44,495 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,496 513 | std::tuple<>()); 2026-09-18T12:54:44,497 | ~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,498 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_12_0::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’, 2026-09-18T12:54:44,499 inlined from ‘bool nlohmann::json_abi_v3_12_0::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_12_0::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_12_0::detail::input_stream_adapter]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/nlohmann/nlohmann/json.hpp:9236:83: 2026-09-18T12:54:44,500 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:44,501 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-09-18T12:54:44,502 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,503 512 | std::tuple(__k), 2026-09-18T12:54:44,504 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:44,505 513 | std::tuple<>()); 2026-09-18T12:54:44,505 | ~~~~~~~~~~~~~~~ 2026-09-18T12:54:47,705 [9/18] Building CXX object CMakeFiles/sonata.dir/src/population.cpp.o 2026-09-18T12:54:47,706 In file included from /usr/include/c++/12/algorithm:61, 2026-09-18T12:54:47,707 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:10: 2026-09-18T12:54:47,708 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-09-18T12:54:47,709 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,710 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-09-18T12:54:47,710 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:47,711 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:47,712 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,714 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-09-18T12:54:47,715 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:47,715 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,716 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-09-18T12:54:47,717 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:47,718 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,719 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:54:47,720 | ^~~~~~~~~~~~~ 2026-09-18T12:54:47,721 In file included from /usr/include/c++/12/vector:70, 2026-09-18T12:54:47,722 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:16, 2026-09-18T12:54:47,724 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:14: 2026-09-18T12:54:47,725 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:54:47,726 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:54:47,727 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:54:47,728 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:47,728 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-09-18T12:54:47,729 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-09-18T12:54:47,730 In file included from /usr/include/c++/12/vector:64: 2026-09-18T12:54:47,731 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:47,731 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = std::__cxx11::basic_string; UnaryPredicate = std::function)>]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26: 2026-09-18T12:54:47,732 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:47,734 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,743 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,744 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:47,745 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,746 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:54:47,747 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:47,748 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,749 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,750 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:54:47,751 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:47,752 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:54:47,753 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:54:47,754 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:79:14: 2026-09-18T12:54:47,755 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,756 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:54:47,757 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:54:47,758 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:54:47,759 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:47,759 1939 | __comp); 2026-09-18T12:54:47,760 | ~~~~~~~ 2026-09-18T12:54:47,761 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:54:47,762 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:54:47,763 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:54:47,764 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:79:14: 2026-09-18T12:54:47,765 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,766 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:54:47,767 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:47,768 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,769 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:54:47,770 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:47,771 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:47,772 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:89:18: 2026-09-18T12:54:47,773 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,774 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,775 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,776 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:47,777 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:99:26: 2026-09-18T12:54:47,778 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:47,778 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,779 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,794 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:47,795 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = float; UnaryPredicate = std::function]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:47,796 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = float]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:228:46: 2026-09-18T12:54:47,797 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:47,798 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,799 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,800 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:47,803 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = double; UnaryPredicate = std::function]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:47,804 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = double]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:228:46: 2026-09-18T12:54:47,805 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:47,812 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,812 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,813 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:47,814 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = signed char; UnaryPredicate = std::function]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:47,815 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = signed char]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:228:46: 2026-09-18T12:54:47,816 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:47,817 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,818 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,819 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:47,820 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned char; UnaryPredicate = std::function]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:47,833 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = unsigned char]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:228:46: 2026-09-18T12:54:47,843 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:47,844 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,854 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,855 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:47,856 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = short int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:47,857 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = short int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:228:46: 2026-09-18T12:54:47,858 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:47,859 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,860 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,861 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:47,862 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = short unsigned int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:47,863 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = short unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:228:46: 2026-09-18T12:54:47,864 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:47,865 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,866 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,867 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:47,868 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:47,870 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:228:46: 2026-09-18T12:54:47,870 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:47,871 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,872 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,873 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:47,874 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:47,875 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:228:46: 2026-09-18T12:54:47,876 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:47,877 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,878 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,879 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:47,880 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = long long int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:47,894 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = long long int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:228:46: 2026-09-18T12:54:47,904 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:47,905 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,906 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:47,906 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:47,907 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = long long unsigned int; UnaryPredicate = std::function]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:47,908 inlined from ‘bbp::sonata::Selection bbp::sonata::Population::filterAttribute(const std::string&, std::function) const [with T = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.cpp:228:46: 2026-09-18T12:54:47,909 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:47,911 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:47,911 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:50,247 [10/18] Building CXX object CMakeFiles/sonata.dir/src/version.cpp.o 2026-09-18T12:54:53,173 [11/18] Building CXX object CMakeFiles/sonata.dir/src/selection.cpp.o 2026-09-18T12:54:53,174 In file included from /usr/include/c++/12/algorithm:61, 2026-09-18T12:54:53,174 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/fmt/include/fmt/format-inl.h:12, 2026-09-18T12:54:53,175 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/fmt/include/fmt/format.h:4417, 2026-09-18T12:54:53,176 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/selection.cpp:3: 2026-09-18T12:54:53,177 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’: 2026-09-18T12:54:53,178 /usr/include/c++/12/bits/stl_algo.h:1782:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,179 1782 | __unguarded_linear_insert(_RandomAccessIterator __last, 2026-09-18T12:54:53,180 | ^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:53,181 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:53,182 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,183 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-09-18T12:54:53,184 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:53,185 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,186 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-09-18T12:54:53,187 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Distance = int; _Tp = array; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:53,188 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,189 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:54:53,189 | ^~~~~~~~~~~~~ 2026-09-18T12:54:53,190 In file included from /usr/include/c++/12/vector:70, 2026-09-18T12:54:53,191 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:8, 2026-09-18T12:54:53,192 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/selection.cpp:1: 2026-09-18T12:54:53,194 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:54:53,194 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:54:53,195 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:54:53,196 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:53,197 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:54:53,198 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:54:53,199 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:53,200 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,201 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:54:53,202 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:53,203 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,204 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,205 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:54:53,205 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:53,206 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:54:53,207 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:54:53,208 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:79:14: 2026-09-18T12:54:53,209 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,210 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:54:53,211 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:54:53,212 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:54:53,213 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:53,214 1939 | __comp); 2026-09-18T12:54:53,214 | ~~~~~~~ 2026-09-18T12:54:53,215 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:54:53,216 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, vector > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:54:53,217 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:54:53,218 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:79:14: 2026-09-18T12:54:53,219 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,220 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:54:53,221 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:53,222 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,223 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:54:53,224 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:53,225 In file included from /usr/include/c++/12/vector:64: 2026-09-18T12:54:53,226 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:53,234 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:89:18: 2026-09-18T12:54:53,235 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,235 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:53,236 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:53,237 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:53,238 inlined from ‘std::vector bbp::sonata::bulk_read::sortAndMerge(const std::vector&, size_t, size_t) [with Range = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:99:26: 2026-09-18T12:54:53,239 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,240 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:53,241 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:53,242 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:53,243 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-09-18T12:54:53,244 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = const std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18, 2026-09-18T12:54:53,245 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-09-18T12:54:53,245 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-09-18T12:54:53,246 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-09-18T12:54:53,247 inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7, 2026-09-18T12:54:53,248 inlined from ‘bool bbp::sonata::Selection::contains(Value) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/selection.cpp:123:14: 2026-09-18T12:54:53,249 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,250 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:53,251 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:53,252 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’: 2026-09-18T12:54:53,253 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:144:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:53,253 144 | Selection Selection::fromValues(Iterator first, Iterator last) { 2026-09-18T12:54:53,254 | ^~~~~~~~~ 2026-09-18T12:54:53,255 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:144:11: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:53,256 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:53,258 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:154:33: 2026-09-18T12:54:53,259 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,260 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:53,261 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:53,262 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:53,263 inlined from ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(Iterator, Iterator) [with Iterator = __gnu_cxx::__normal_iterator >]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/selection.h:163:25: 2026-09-18T12:54:53,264 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,265 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:53,266 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:53,267 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/selection.cpp: In static member function ‘static bbp::sonata::Selection bbp::sonata::Selection::fromValues(const Values&)’: 2026-09-18T12:54:53,268 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/selection.cpp:71:51: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:53,269 71 | return fromValues(values.begin(), values.end()); 2026-09-18T12:54:53,270 | ^ 2026-09-18T12:54:53,271 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:53,272 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-09-18T12:54:53,283 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = const std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18, 2026-09-18T12:54:53,285 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-09-18T12:54:53,286 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-09-18T12:54:53,287 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-09-18T12:54:53,288 inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7, 2026-09-18T12:54:53,289 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::union_(const Ranges&, const Ranges&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/selection.cpp:57:14: 2026-09-18T12:54:53,290 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,291 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:53,291 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:53,292 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:53,293 inlined from ‘std::back_insert_iterator<_Container>& std::back_insert_iterator<_Container>::operator=(const typename _Container::value_type&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:735:22, 2026-09-18T12:54:53,294 inlined from ‘static _OI std::__copy_move::__copy_m(_II, _II, _OI) [with _II = const std::array*; _OI = std::back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:385:18, 2026-09-18T12:54:53,295 inlined from ‘_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:495:30, 2026-09-18T12:54:53,296 inlined from ‘_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = false; _II = const array*; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:522:42, 2026-09-18T12:54:53,298 inlined from ‘_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = false; _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:529:31, 2026-09-18T12:54:53,299 inlined from ‘_OI std::copy(_II, _II, _OI) [with _II = __gnu_cxx::__normal_iterator*, vector > >; _OI = back_insert_iterator > >]’ at /usr/include/c++/12/bits/stl_algobase.h:620:7, 2026-09-18T12:54:53,300 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::union_(const Ranges&, const Ranges&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/selection.cpp:58:14: 2026-09-18T12:54:53,301 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,302 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:53,303 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:53,304 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:53,305 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:54:53,306 inlined from ‘bbp::sonata::Selection bbp::sonata::detail::intersection_(const Ranges&, const Ranges&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/selection.cpp:42:26: 2026-09-18T12:54:53,307 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:53,308 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:53,309 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,233 [12/18] Building CXX object CMakeFiles/sonata.dir/src/nodes.cpp.o 2026-09-18T12:54:55,234 In file included from /usr/include/c++/12/bits/stl_algo.h:60, 2026-09-18T12:54:55,235 from /usr/include/c++/12/functional:64, 2026-09-18T12:54:55,236 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/population.h:15, 2026-09-18T12:54:55,237 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/population.hpp:14, 2026-09-18T12:54:55,238 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:10: 2026-09-18T12:54:55,238 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:55,239 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:55,240 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:54:55,241 | ^~~~~~~~~~~~~ 2026-09-18T12:54:55,242 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Distance = int; _Tp = long long int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:55,243 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:55,244 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:55,245 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:55,246 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-09-18T12:54:55,247 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,248 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:55,249 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:55,249 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:55,250 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:55,251 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:55,252 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:55,253 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:54:55,254 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,255 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:55,256 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:55,257 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:54:55,258 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,259 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: 2026-09-18T12:54:55,260 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:55,261 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:54:55,262 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,263 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:55,264 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:55,265 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:54:55,266 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,267 In file included from /usr/include/c++/12/vector:70, 2026-09-18T12:54:55,268 from /usr/include/c++/12/functional:62: 2026-09-18T12:54:55,269 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: 2026-09-18T12:54:55,270 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-09-18T12:54:55,271 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:54:55,271 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,272 In file included from /usr/include/c++/12/vector:64: 2026-09-18T12:54:55,273 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:55,274 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned int; UnaryPredicate = {anonymous}::_filterStringAttribute >(const std::string&, const std::vector >&) const:: >(const bbp::sonata::NodePopulation&, std::string, bbp::sonata::NodePopulation::matchAttributeValues >(const std::string&, const std::vector >&) const::)::]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:55,275 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_filterStringAttribute(const bbp::sonata::NodePopulation&, std::string, UnaryPredicate) [with UnaryPredicate = bbp::sonata::NodePopulation::matchAttributeValues >(const std::string&, const std::vector >&) const::]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:84:10, 2026-09-18T12:54:55,276 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = std::__cxx11::basic_string]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:147:57: 2026-09-18T12:54:55,277 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:55,278 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:55,279 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:55,280 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:54:55,281 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:54:55,282 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:37:18, 2026-09-18T12:54:55,283 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:122:65: 2026-09-18T12:54:55,284 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:55,285 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:54:55,286 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,287 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:54:55,288 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,289 1939 | __comp); 2026-09-18T12:54:55,290 | ~~~~~~~ 2026-09-18T12:54:55,291 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:54:55,292 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:54:55,293 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator > >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:54:55,294 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:37:18, 2026-09-18T12:54:55,295 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:122:65: 2026-09-18T12:54:55,296 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:55,297 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:54:55,298 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,299 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:55,300 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:54:55,301 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,302 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:54:55,303 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:54:55,304 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:37:18, 2026-09-18T12:54:55,305 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:122:65: 2026-09-18T12:54:55,306 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:55,308 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:54:55,309 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,310 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:54:55,311 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,312 1939 | __comp); 2026-09-18T12:54:55,313 | ~~~~~~~ 2026-09-18T12:54:55,314 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’, 2026-09-18T12:54:55,315 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:54:55,316 inlined from ‘void std::sort(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]’ at /usr/include/c++/12/bits/stl_algo.h:4820:18, 2026-09-18T12:54:55,317 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_matchAttributeValues(const bbp::sonata::NodePopulation&, const std::string&, const std::vector&) [with T = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:37:18, 2026-09-18T12:54:55,318 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::matchAttributeValues(const std::string&, const std::vector&) const [with T = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:122:65: 2026-09-18T12:54:55,319 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:55,320 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:54:55,322 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,323 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:55,324 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:54:55,325 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:55,326 In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = long long unsigned int; _Alloc = std::allocator]’, 2026-09-18T12:54:55,327 inlined from ‘bbp::sonata::Selection bbp::sonata::_getMatchingSelection(const std::vector&, UnaryPredicate) [with T = unsigned int; UnaryPredicate = {anonymous}::_filterStringAttribute >(const bbp::sonata::NodePopulation&, std::string, bbp::sonata::NodePopulation::regexMatch(const std::string&, const std::string&) const::)::]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/utils.h:34:26, 2026-09-18T12:54:55,329 inlined from ‘bbp::sonata::Selection bbp::sonata::{anonymous}::_filterStringAttribute(const bbp::sonata::NodePopulation&, std::string, UnaryPredicate) [with UnaryPredicate = bbp::sonata::NodePopulation::regexMatch(const std::string&, const std::string&) const::]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:84:10, 2026-09-18T12:54:55,330 inlined from ‘bbp::sonata::Selection bbp::sonata::NodePopulation::regexMatch(const std::string&, const std::string&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/nodes.cpp:110:57: 2026-09-18T12:54:55,331 /usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:55,332 1287 | _M_realloc_insert(end(), __x); 2026-09-18T12:54:55,333 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ 2026-09-18T12:54:58,215 [13/18] Building CXX object CMakeFiles/sonata.dir/src/report_reader.cpp.o 2026-09-18T12:54:58,216 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp: In instantiation of ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const std::optional&, const std::optional&, const std::optional&, const std::optional&, const std::optional&) const [with KeyType = long long unsigned int]’: 2026-09-18T12:54:58,217 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:610:16: required from here 2026-09-18T12:54:58,218 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:582:42: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,219 582 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-09-18T12:54:58,219 | ^~~ 2026-09-18T12:54:58,220 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:582:42: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,221 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:582:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,222 582 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-09-18T12:54:58,223 | ~~~~^~~~~ 2026-09-18T12:54:58,224 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:582:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,225 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp: In instantiation of ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = long long unsigned int]’: 2026-09-18T12:54:58,226 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:610:16: required from here 2026-09-18T12:54:58,227 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:452:38: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,228 452 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-09-18T12:54:58,229 | ^~~ 2026-09-18T12:54:58,230 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:452:38: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,231 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:452:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,232 452 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-09-18T12:54:58,232 | ~~~~^~~~~ 2026-09-18T12:54:58,233 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:452:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,234 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:475:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,235 475 | dataset_elem_ids.select({std::get<0>(result.node_ranges[index])}, {1}).read(element_ids); 2026-09-18T12:54:58,235 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,236 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:475:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,237 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp: In instantiation of ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const std::optional&, const std::optional&, const std::optional&, const std::optional&, const std::optional&) const [with KeyType = std::array]’: 2026-09-18T12:54:58,238 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:611:16: required from here 2026-09-18T12:54:58,239 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:582:42: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,240 582 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-09-18T12:54:58,241 | ^~~ 2026-09-18T12:54:58,242 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:582:42: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,243 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:582:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,244 582 | dataset.select({timer_index, min}, {1, max - min}).squeezeMemSpace({0}).read(buffer); 2026-09-18T12:54:58,245 | ~~~~^~~~~ 2026-09-18T12:54:58,246 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:582:56: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,247 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp: In instantiation of ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = std::array]’: 2026-09-18T12:54:58,247 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:611:16: required from here 2026-09-18T12:54:58,248 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:452:38: warning: narrowing conversion of ‘(long long unsigned int)min’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,249 452 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-09-18T12:54:58,250 | ^~~ 2026-09-18T12:54:58,250 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:452:38: warning: narrowing conversion of ‘min’ from ‘const long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,251 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:452:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,253 452 | dataset_elem_ids.select({min}, {max - min}).read(element_ids); 2026-09-18T12:54:58,254 | ~~~~^~~~~ 2026-09-18T12:54:58,255 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:452:49: warning: narrowing conversion of ‘(((long long unsigned int)max) - ((long long unsigned int)min))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,256 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:475:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader >::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,257 475 | dataset_elem_ids.select({std::get<0>(result.node_ranges[index])}, {1}).read(element_ids); 2026-09-18T12:54:58,258 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,258 /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:475:32: warning: narrowing conversion of ‘std::get<0, long long unsigned int, 2>((* & result.bbp::sonata::ReportReader >::Population::NodeIdElementLayout::node_ranges.std::vector >::operator[](((std::vector >::size_type)((long long unsigned int)index)))))’ from ‘long long unsigned int’ to ‘unsigned int’ [-Wnarrowing] 2026-09-18T12:54:58,259 In file included from /usr/include/c++/12/vector:70, 2026-09-18T12:54:58,260 from /usr/include/c++/12/functional:62, 2026-09-18T12:54:58,261 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/bits/../H5Utility.hpp:12, 2026-09-18T12:54:58,262 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/bits/H5Object_misc.hpp:14, 2026-09-18T12:54:58,263 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/H5Object.hpp:139, 2026-09-18T12:54:58,263 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/HighFive/include/highfive/H5File.hpp:14, 2026-09-18T12:54:58,264 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_canonical_selection.hpp:3, 2026-09-18T12:54:58,265 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/hdf5_reader.hpp:3, 2026-09-18T12:54:58,265 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:1: 2026-09-18T12:54:58,266 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: 2026-09-18T12:54:58,267 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:54:58,268 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:54:58,268 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,269 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’, 2026-09-18T12:54:58,270 inlined from ‘bbp::sonata::SpikeTimes bbp::sonata::SpikeReader::Population::getArrays(const std::optional&, const std::optional&, const std::optional&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:190:52: 2026-09-18T12:54:58,271 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:58,272 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,274 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,274 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:54:58,275 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:54:58,276 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:54:58,277 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,278 In file included from /usr/include/c++/12/unordered_map:46, 2026-09-18T12:54:58,279 from /usr/include/c++/12/functional:61: 2026-09-18T12:54:58,280 /usr/include/c++/12/bits/hashtable.h: In constructor ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::_Hashtable(_InputIterator, _InputIterator, size_type, const _Hash&, const _Equal&, const allocator_type&, std::true_type) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Key = long long unsigned int; _Value = long long unsigned int; _Alloc = std::allocator; _ExtractKey = std::__detail::_Identity; _Equal = std::equal_to; _Hash = std::hash; _RangeHash = std::__detail::_Mod_range_hashing; _Unused = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’: 2026-09-18T12:54:58,281 /usr/include/c++/12/bits/hashtable.h:1182:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,282 1182 | _Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, 2026-09-18T12:54:58,283 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,284 1183 | _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>:: 2026-09-18T12:54:58,285 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,285 /usr/include/c++/12/bits/hashtable.h:1182:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,286 In file included from /usr/include/c++/12/set:60, 2026-09-18T12:54:58,287 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/population.h:17, 2026-09-18T12:54:58,288 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_bulk.hpp:7, 2026-09-18T12:54:58,289 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/read_canonical_selection.hpp:6: 2026-09-18T12:54:58,290 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::SpikeReader::Population}; _Key = std::__cxx11::basic_string; _Val = std::pair, bbp::sonata::SpikeReader::Population>; _KeyOfValue = std::_Select1st, bbp::sonata::SpikeReader::Population> >; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::SpikeReader::Population> >]’: 2026-09-18T12:54:58,291 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, bbp::sonata::SpikeReader::Population>, std::_Select1st, bbp::sonata::SpikeReader::Population> >, std::less >, std::allocator, bbp::sonata::SpikeReader::Population> > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:58,292 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-09-18T12:54:58,293 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,294 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {unsigned int&, double&}; _Tp = std::pair; _Alloc = std::allocator >]’: 2026-09-18T12:54:58,295 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:54:58,296 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:54:58,297 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,298 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::ReportReader::Population}; _Key = std::__cxx11::basic_string; _Val = std::pair, bbp::sonata::ReportReader::Population>; _KeyOfValue = std::_Select1st, bbp::sonata::ReportReader::Population> >; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::ReportReader::Population> >]’: 2026-09-18T12:54:58,299 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, bbp::sonata::ReportReader::Population>, std::_Select1st, bbp::sonata::ReportReader::Population> >, std::less >, std::allocator, bbp::sonata::ReportReader::Population> > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:58,300 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-09-18T12:54:58,301 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,302 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:54:58,303 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:54:58,304 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:54:58,305 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,306 /usr/include/c++/12/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’: 2026-09-18T12:54:58,306 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:58,308 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,309 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,309 /usr/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::ReportReader >::Population}; _Key = std::__cxx11::basic_string; _Val = std::pair, bbp::sonata::ReportReader >::Population>; _KeyOfValue = std::_Select1st, bbp::sonata::ReportReader >::Population> >; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::ReportReader >::Population> >]’: 2026-09-18T12:54:58,310 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, bbp::sonata::ReportReader >::Population>, std::_Select1st, bbp::sonata::ReportReader >::Population> >, std::less >, std::allocator, bbp::sonata::ReportReader >::Population> > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:54:58,311 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-09-18T12:54:58,312 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,313 In constructor ‘std::_Hashtable<_Key, _Value, _Alloc, _ExtractKey, _Equal, _Hash, _RangeHash, _Unused, _RehashPolicy, _Traits>::_Hashtable(_InputIterator, _InputIterator, size_type, const _Hash&, const key_equal&, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Key = long long unsigned int; _Value = long long unsigned int; _Alloc = std::allocator; _ExtractKey = std::__detail::_Identity; _Equal = std::equal_to; _Hash = std::hash; _RangeHash = std::__detail::_Mod_range_hashing; _Unused = std::__detail::_Default_ranged_hash; _RehashPolicy = std::__detail::_Prime_rehash_policy; _Traits = std::__detail::_Hashtable_traits]’, 2026-09-18T12:54:58,314 inlined from ‘std::unordered_set<_Value, _Hash, _Pred, _Alloc>::unordered_set(_InputIterator, _InputIterator, size_type, const hasher&, const key_equal&, const allocator_type&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _Value = long long unsigned int; _Hash = std::hash; _Pred = std::equal_to; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/unordered_set.h:171:4, 2026-09-18T12:54:58,315 inlined from ‘void {anonymous}::filterNodeIDUnsorted(bbp::sonata::Spikes&, const bbp::sonata::Selection&)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:32:99, 2026-09-18T12:54:58,316 inlined from ‘void bbp::sonata::SpikeReader::Population::filterNode(bbp::sonata::Spikes&, const bbp::sonata::Selection&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:239:29: 2026-09-18T12:54:58,316 /usr/include/c++/12/bits/hashtable.h:569:37: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,317 569 | __unique_keys{}) 2026-09-18T12:54:58,318 | ^ 2026-09-18T12:54:58,319 In file included from /usr/include/c++/12/functional:64: 2026-09-18T12:54:58,320 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-09-18T12:54:58,320 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,321 1802 | __insertion_sort(_RandomAccessIterator __first, 2026-09-18T12:54:58,322 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,323 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,324 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’: 2026-09-18T12:54:58,325 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,326 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,327 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-09-18T12:54:58,328 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,329 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,329 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’: 2026-09-18T12:54:58,330 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,331 /usr/include/c++/12/bits/stl_algo.h:1802:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,332 In file included from /usr/include/c++/12/map:61, 2026-09-18T12:54:58,333 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/report_reader.h:3, 2026-09-18T12:54:58,334 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:2: 2026-09-18T12:54:58,335 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::SpikeReader::Population}; _Key = std::__cxx11::basic_string; _Tp = bbp::sonata::SpikeReader::Population; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::SpikeReader::Population> >]’, 2026-09-18T12:54:58,336 inlined from ‘std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::SpikeReader::Population}; _Key = std::__cxx11::basic_string; _Tp = bbp::sonata::SpikeReader::Population; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::SpikeReader::Population> >]’ at /usr/include/c++/12/bits/stl_map.h:599:22, 2026-09-18T12:54:58,337 inlined from ‘const bbp::sonata::SpikeReader::Population& bbp::sonata::SpikeReader::openPopulation(const std::string&) const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:111:29: 2026-09-18T12:54:58,338 /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map, bbp::sonata::SpikeReader::Population>::const_iterator’ {aka ‘std::_Rb_tree, std::pair, bbp::sonata::SpikeReader::Population>, std::_Select1st, bbp::sonata::SpikeReader::Population> >, std::less >, std::allocator, bbp::sonata::SpikeReader::Population> > >::const_iterator’} changed in GCC 7.1 2026-09-18T12:54:58,339 638 | return _M_t._M_emplace_hint_unique(__pos, 2026-09-18T12:54:58,340 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2026-09-18T12:54:58,340 639 | std::forward<_Args>(__args)...); 2026-09-18T12:54:58,341 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,342 In file included from /usr/include/c++/12/bits/stl_algo.h:60: 2026-09-18T12:54:58,343 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-09-18T12:54:58,353 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,355 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:54:58,356 | ^~~~~~~~~~~~~ 2026-09-18T12:54:58,356 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-09-18T12:54:58,357 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,358 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:54:58,360 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,361 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,362 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,363 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:54:58,364 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,364 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:58,365 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:54:58,366 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:287:31: 2026-09-18T12:54:58,367 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:58,368 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,369 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,370 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-09-18T12:54:58,371 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:54:58,372 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:305:22: 2026-09-18T12:54:58,373 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,374 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:54:58,375 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,376 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:54:58,377 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,377 1939 | __comp); 2026-09-18T12:54:58,378 | ~~~~~~~ 2026-09-18T12:54:58,379 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-09-18T12:54:58,381 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::Population(const HighFive::File&, const std::string&):: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:54:58,382 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:54:58,383 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:305:22: 2026-09-18T12:54:58,383 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,384 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:54:58,385 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,386 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,387 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:54:58,388 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,389 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {unsigned int&, double&}; _Tp = std::pair; _Alloc = std::allocator >]’, 2026-09-18T12:54:58,390 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:335:38: 2026-09-18T12:54:58,391 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:58,392 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,393 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,394 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::ReportReader::Population}; _Key = std::__cxx11::basic_string; _Tp = bbp::sonata::ReportReader::Population; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::ReportReader::Population> >]’, 2026-09-18T12:54:58,395 inlined from ‘std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::ReportReader::Population}; _Key = std::__cxx11::basic_string; _Tp = bbp::sonata::ReportReader::Population; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::ReportReader::Population> >]’ at /usr/include/c++/12/bits/stl_map.h:599:22, 2026-09-18T12:54:58,396 inlined from ‘const bbp::sonata::ReportReader::Population& bbp::sonata::ReportReader::openPopulation(const std::string&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:263:29: 2026-09-18T12:54:58,397 /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map, bbp::sonata::ReportReader::Population, std::less >, std::allocator, bbp::sonata::ReportReader::Population> > >::const_iterator’ {aka ‘std::_Rb_tree, std::pair, bbp::sonata::ReportReader::Population>, std::_Select1st, bbp::sonata::ReportReader::Population> >, std::less >, std::allocator, bbp::sonata::ReportReader::Population> > >::const_iterator’} changed in GCC 7.1 2026-09-18T12:54:58,398 638 | return _M_t._M_emplace_hint_unique(__pos, 2026-09-18T12:54:58,399 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2026-09-18T12:54:58,400 639 | std::forward<_Args>(__args)...); 2026-09-18T12:54:58,401 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,402 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’: 2026-09-18T12:54:58,403 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,404 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:54:58,405 | ^~~~~~~~~~~~~ 2026-09-18T12:54:58,406 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’: 2026-09-18T12:54:58,407 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,408 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:54:58,409 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,410 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,411 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,412 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:54:58,413 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,414 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:58,415 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:404:48: 2026-09-18T12:54:58,416 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:58,416 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,417 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,418 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’, 2026-09-18T12:54:58,419 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:54:58,420 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:418:18: 2026-09-18T12:54:58,421 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,422 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:54:58,423 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,424 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:54:58,425 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,426 1939 | __comp); 2026-09-18T12:54:58,427 | ~~~~~~~ 2026-09-18T12:54:58,428 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’, 2026-09-18T12:54:58,429 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:54:58,430 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:54:58,431 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:418:18: 2026-09-18T12:54:58,432 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,433 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:54:58,434 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,434 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,435 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:54:58,436 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,437 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:58,438 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:54:58,439 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:434:48: 2026-09-18T12:54:58,440 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:58,441 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,442 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,443 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’, 2026-09-18T12:54:58,444 inlined from ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const std::optional&, const std::optional&, const std::optional&, const std::optional&, const std::optional&) const [with KeyType = long long unsigned int]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:553:38: 2026-09-18T12:54:58,445 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:58,447 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,448 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,449 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-09-18T12:54:58,450 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,450 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:54:58,451 | ^~~~~~~~~~~~~ 2026-09-18T12:54:58,452 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’: 2026-09-18T12:54:58,454 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,455 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:54:58,456 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,457 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,457 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,458 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:54:58,459 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,460 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:58,461 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:54:58,462 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:287:31: 2026-09-18T12:54:58,464 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:58,464 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,465 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,466 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-09-18T12:54:58,467 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:54:58,468 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:305:22: 2026-09-18T12:54:58,469 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,470 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:54:58,471 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,472 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:54:58,473 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,474 1939 | __comp); 2026-09-18T12:54:58,475 | ~~~~~~~ 2026-09-18T12:54:58,476 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’, 2026-09-18T12:54:58,477 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::Population(const HighFive::File&, const std::string&):: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:54:58,478 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::Population(const HighFive::File&, const std::string&)::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:54:58,479 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:305:22: 2026-09-18T12:54:58,480 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,481 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:54:58,482 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,483 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,484 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:54:58,485 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,485 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {unsigned int&, double&}; _Tp = std::pair; _Alloc = std::allocator >]’, 2026-09-18T12:54:58,486 inlined from ‘bbp::sonata::ReportReader::Population::Population(const HighFive::File&, const std::string&) [with KeyType = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:335:38: 2026-09-18T12:54:58,487 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:58,488 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,489 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,490 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::iterator std::map<_Key, _Tp, _Compare, _Alloc>::emplace_hint(const_iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::ReportReader >::Population}; _Key = std::__cxx11::basic_string; _Tp = bbp::sonata::ReportReader >::Population; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::ReportReader >::Population> >]’, 2026-09-18T12:54:58,491 inlined from ‘std::pair, std::_Select1st >, _Compare, typename __gnu_cxx::__alloc_traits<_Allocator>::rebind >::other>::iterator, bool> std::map<_Key, _Tp, _Compare, _Alloc>::emplace(_Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, bbp::sonata::ReportReader >::Population}; _Key = std::__cxx11::basic_string; _Tp = bbp::sonata::ReportReader >::Population; _Compare = std::less >; _Alloc = std::allocator, bbp::sonata::ReportReader >::Population> >]’ at /usr/include/c++/12/bits/stl_map.h:599:22, 2026-09-18T12:54:58,492 inlined from ‘const bbp::sonata::ReportReader::Population& bbp::sonata::ReportReader::openPopulation(const std::string&) const [with KeyType = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:263:29: 2026-09-18T12:54:58,493 /usr/include/c++/12/bits/stl_map.h:638:45: note: parameter passing for argument of type ‘std::map, bbp::sonata::ReportReader >::Population, std::less >, std::allocator, bbp::sonata::ReportReader >::Population> > >::const_iterator’ {aka ‘std::_Rb_tree, std::pair, bbp::sonata::ReportReader >::Population>, std::_Select1st, bbp::sonata::ReportReader >::Population> >, std::less >, std::allocator, bbp::sonata::ReportReader >::Population> > >::const_iterator’} changed in GCC 7.1 2026-09-18T12:54:58,494 638 | return _M_t._M_emplace_hint_unique(__pos, 2026-09-18T12:54:58,495 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 2026-09-18T12:54:58,496 639 | std::forward<_Args>(__args)...); 2026-09-18T12:54:58,497 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,498 /usr/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’: 2026-09-18T12:54:58,499 /usr/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,500 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, 2026-09-18T12:54:58,501 | ^~~~~~~~~~~~~ 2026-09-18T12:54:58,502 /usr/include/c++/12/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’: 2026-09-18T12:54:58,503 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,504 1908 | __introsort_loop(_RandomAccessIterator __first, 2026-09-18T12:54:58,505 | ^~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,506 /usr/include/c++/12/bits/stl_algo.h:1908:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,506 /usr/include/c++/12/bits/stl_algo.h:1922:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,507 1922 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); 2026-09-18T12:54:58,508 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,509 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const std::array&}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:58,510 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:404:48: 2026-09-18T12:54:58,511 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:58,512 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,513 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,514 In function ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’, 2026-09-18T12:54:58,515 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:54:58,516 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:418:18: 2026-09-18T12:54:58,517 /usr/include/c++/12/bits/stl_algo.h:1937:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,518 1937 | std::__introsort_loop(__first, __last, 2026-09-18T12:54:58,519 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,520 1938 | std::__lg(__last - __first) * 2, 2026-09-18T12:54:58,521 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,522 1939 | __comp); 2026-09-18T12:54:58,523 | ~~~~~~~ 2026-09-18T12:54:58,524 In function ‘void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’, 2026-09-18T12:54:58,524 inlined from ‘void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const:: >]’ at /usr/include/c++/12/bits/stl_algo.h:1940:31, 2026-09-18T12:54:58,525 inlined from ‘void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bbp::sonata::ReportReader >::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const::]’ at /usr/include/c++/12/bits/stl_algo.h:4853:18, 2026-09-18T12:54:58,526 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:418:18: 2026-09-18T12:54:58,527 /usr/include/c++/12/bits/stl_algo.h:1849:32: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,528 1849 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); 2026-09-18T12:54:58,529 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,530 /usr/include/c++/12/bits/stl_algo.h:1854:30: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:54:58,531 1854 | std::__insertion_sort(__first, __last, __comp); 2026-09-18T12:54:58,532 | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,533 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::array}; _Tp = std::array; _Alloc = std::allocator >]’, 2026-09-18T12:54:58,534 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::array; _Alloc = std::allocator >]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:54:58,535 inlined from ‘bbp::sonata::ReportReader::Population::NodeIdElementLayout bbp::sonata::ReportReader::Population::getNodeIdElementLayout(const std::optional&, const std::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:434:48: 2026-09-18T12:54:58,536 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 2026-09-18T12:54:58,537 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,538 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:54:58,539 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’, 2026-09-18T12:54:58,539 inlined from ‘bbp::sonata::DataFrame bbp::sonata::ReportReader::Population::get(const std::optional&, const std::optional&, const std::optional&, const std::optional&, const std::optional&) const [with KeyType = std::array]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/report_reader.cpp:553:38: 2026-09-18T12:54:58,541 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:54:58,542 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:54:58,543 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:55:32,262 [14/18] Building CXX object CMakeFiles/sonata.dir/src/utils.cpp.o 2026-09-18T12:55:35,193 [15/18] Building CXX object CMakeFiles/sonata.dir/src/config.cpp.o 2026-09-18T12:55:35,193 In file included from /usr/include/c++/12/vector:70, 2026-09-18T12:55:35,194 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/config.h:17, 2026-09-18T12:55:35,195 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/config.cpp:12: 2026-09-18T12:55:35,195 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::EField}; _Tp = bbp::sonata::SimulationConfig::EField; _Alloc = std::allocator]’: 2026-09-18T12:55:35,196 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-09-18T12:55:35,197 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:55:35,197 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:55:35,198 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::ConnectionOverride}; _Tp = bbp::sonata::SimulationConfig::ConnectionOverride; _Alloc = std::allocator]’: 2026-09-18T12:55:35,199 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 2026-09-18T12:55:35,200 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::ConnectionOverride}; _Tp = bbp::sonata::SimulationConfig::ConnectionOverride; _Alloc = std::allocator]’, 2026-09-18T12:55:35,200 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = bbp::sonata::SimulationConfig::ConnectionOverride; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:55:35,201 inlined from ‘std::vector bbp::sonata::SimulationConfig::Parser::parseConnectionOverrides() const’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/config.cpp:1608:29: 2026-09-18T12:55:35,202 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:55:35,202 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:55:35,203 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:55:35,204 In file included from /usr/include/c++/12/set:60, 2026-09-18T12:55:35,204 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/include/bbp/sonata/config.h:14: 2026-09-18T12:55:35,205 /usr/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’: 2026-09-18T12:55:35,206 /usr/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:55:35,207 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: 2026-09-18T12:55:35,207 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:55:35,208 In file included from /usr/include/c++/12/regex:54, 2026-09-18T12:55:35,208 from /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/config.cpp:15: 2026-09-18T12:55:35,209 /usr/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_12_0::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’: 2026-09-18T12:55:35,210 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:55:35,210 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-09-18T12:55:35,211 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:55:35,211 512 | std::tuple(__k), 2026-09-18T12:55:35,212 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:55:35,213 513 | std::tuple<>()); 2026-09-18T12:55:35,213 | ~~~~~~~~~~~~~~~ 2026-09-18T12:55:35,214 In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = nlohmann::json_abi_v3_12_0::basic_json<>; _Compare = std::less; _Alloc = std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > >]’, 2026-09-18T12:55:35,215 inlined from ‘bool nlohmann::json_abi_v3_12_0::detail::json_sax_dom_callback_parser::key(string_t&) [with BasicJsonType = nlohmann::json_abi_v3_12_0::basic_json<>; InputAdapterType = nlohmann::json_abi_v3_12_0::detail::iterator_input_adapter<__gnu_cxx::__normal_iterator > >]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/nlohmann/nlohmann/json.hpp:9236:83: 2026-09-18T12:55:35,215 /usr/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::json_abi_v3_12_0::basic_json<> >, std::_Select1st, nlohmann::json_abi_v3_12_0::basic_json<> > >, std::less, std::allocator, nlohmann::json_abi_v3_12_0::basic_json<> > > >::const_iterator’ changed in GCC 7.1 2026-09-18T12:55:35,216 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, 2026-09-18T12:55:35,216 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:55:35,217 512 | std::tuple(__k), 2026-09-18T12:55:35,218 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:55:35,218 513 | std::tuple<>()); 2026-09-18T12:55:35,219 | ~~~~~~~~~~~~~~~ 2026-09-18T12:55:35,219 /usr/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: 2026-09-18T12:55:35,220 /usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 2026-09-18T12:55:35,220 439 | vector<_Tp, _Alloc>:: 2026-09-18T12:55:35,221 | ^~~~~~~~~~~~~~~~~~~ 2026-09-18T12:55:35,222 In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_insert_rval(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’, 2026-09-18T12:55:35,223 inlined from ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1389:30, 2026-09-18T12:55:35,223 inlined from ‘std::insert_iterator<_Container>& std::insert_iterator<_Container>::operator=(typename _Container::value_type&&) [with _Container = std::vector >]’ at /usr/include/c++/12/bits/stl_iterator.h:973:26, 2026-09-18T12:55:35,224 inlined from ‘_OIter std::transform(_IIter, _IIter, _OIter, _UnaryOperation) [with _IIter = nlohmann::json_abi_v3_12_0::detail::iter_impl >; _OIter = insert_iterator > >; _UnaryOperation = nlohmann::json_abi_v3_12_0::detail::from_json_array_impl, std::vector > >(const nlohmann::json_abi_v3_12_0::basic_json<>&, std::vector >&, priority_tag<1>)::&)>]’ at /usr/include/c++/12/bits/stl_algo.h:4263:12, 2026-09-18T12:55:35,225 inlined from ‘decltype (((arr.reserve(declval()), j.get()), void())) nlohmann::json_abi_v3_12_0::detail::from_json_array_impl(const BasicJsonType&, ConstructibleArrayType&, priority_tag<1>) [with BasicJsonType = nlohmann::json_abi_v3_12_0::basic_json<>; ConstructibleArrayType = std::vector >; typename std::enable_if::value, int>::type = 0]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/nlohmann/nlohmann/json.hpp:5078:19, 2026-09-18T12:55:35,225 inlined from ‘decltype (((nlohmann::json_abi_v3_12_0::detail::from_json_array_impl(j, arr, nlohmann::json_abi_v3_12_0::detail::priority_tag<3>{}), j.get()), void())) nlohmann::json_abi_v3_12_0::detail::from_json(const BasicJsonType&, ConstructibleArrayType&) [with BasicJsonType = nlohmann::json_abi_v3_12_0::basic_json<>; ConstructibleArrayType = std::vector >; typename std::enable_if<((((is_constructible_array_type::value && (! is_constructible_object_type::value)) && (! is_constructible_string_type::value)) && (! std::is_same::value)) && (! is_basic_json::value)), int>::type = 0]’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/extlib/nlohmann/nlohmann/json.hpp:5127:25: 2026-09-18T12:55:35,226 /usr/include/c++/12/bits/vector.tcc:366:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 2026-09-18T12:55:35,227 366 | _M_realloc_insert(begin() + __n, std::move(__v)); 2026-09-18T12:55:35,227 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:55:35,228 In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {bbp::sonata::SimulationConfig::EField}; _Tp = bbp::sonata::SimulationConfig::EField; _Alloc = std::allocator]’, 2026-09-18T12:55:35,229 inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = bbp::sonata::SimulationConfig::EField; _Alloc = std::allocator]’ at /usr/include/c++/12/bits/stl_vector.h:1294:21, 2026-09-18T12:55:35,229 inlined from ‘void bbp::sonata::{anonymous}::parseInputsEFields(const nlohmann::json_abi_v3_12_0::json&, const std::string&, std::vector&, double)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/config.cpp:444:22, 2026-09-18T12:55:35,230 inlined from ‘bbp::sonata::SimulationConfig::Input bbp::sonata::{anonymous}::parseInputModule(const nlohmann::json_abi_v3_12_0::json&, bbp::sonata::SimulationConfig::InputBase::Module, const std::string&, const std::string&, double)’ at /tmp/pip-wheel-kk1ck5vt/libsonata_cc555af559ab4dfab58764fef9427650/src/config.cpp:692:27: 2026-09-18T12:55:35,231 /usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 2026-09-18T12:55:35,231 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); 2026-09-18T12:55:35,232 | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-18T12:55:36,159 [16/18] Linking CXX static library libsonata.a 2026-09-18T12:56:22,627 [17/18] Building CXX object python/CMakeFiles/_libsonata.dir/bindings.cpp.o 2026-09-18T12:56:57,428 [18/18] Linking CXX shared module python/_libsonata.cpython-311-arm-linux-gnueabihf.so 2026-09-18T12:56:57,434 *** Installing project into wheel... 2026-09-18T12:56:57,476 -- Install configuration: "Release" 2026-09-18T12:56:57,482 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/lib/libsonata.a 2026-09-18T12:56:57,607 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp 2026-09-18T12:56:57,610 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata 2026-09-18T12:56:57,613 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata/config.h 2026-09-18T12:56:57,617 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata/selection.h 2026-09-18T12:56:57,620 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata/hdf5_reader.h 2026-09-18T12:56:57,623 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata/report_reader.h 2026-09-18T12:56:57,626 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata/node_sets.h 2026-09-18T12:56:57,629 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata/edges.h 2026-09-18T12:56:57,631 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata/compartment_sets.h 2026-09-18T12:56:57,634 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata/common.h 2026-09-18T12:56:57,637 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata/population.h 2026-09-18T12:56:57,640 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata/nodes.h 2026-09-18T12:56:57,643 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/include/bbp/sonata/electrode_reader.h 2026-09-18T12:56:57,648 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/share/sonata/CMake/sonata-config.cmake 2026-09-18T12:56:57,652 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/share/sonata/CMake/sonata-targets.cmake 2026-09-18T12:56:57,655 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/share/sonata/CMake/sonata-targets-release.cmake 2026-09-18T12:56:57,661 -- Installing: /tmp/tmpj96oajvp/wheel/platlib/libsonata/_libsonata.cpython-311-arm-linux-gnueabihf.so 2026-09-18T12:56:57,702 -- Set runtime path of "/tmp/tmpj96oajvp/wheel/platlib/libsonata/_libsonata.cpython-311-arm-linux-gnueabihf.so" to "" 2026-09-18T12:56:57,798 *** Making wheel... 2026-09-18T12:56:58,480 *** Created libsonata-0.2.1-cp311-cp311-linux_armv7l.whl 2026-09-18T12:56:58,561 Building wheel for libsonata (pyproject.toml): finished with status 'done' 2026-09-18T12:56:58,574 Created wheel for libsonata: filename=libsonata-0.2.1-cp311-cp311-linux_armv7l.whl size=842368 sha256=c92df2c2242490a47ef42f12385d15b472e70439c7a9254112df0d303b6fd46b 2026-09-18T12:56:58,576 Stored in directory: /tmp/pip-ephem-wheel-cache-gi2xgdo5/wheels/af/93/b1/65e6d77cf64935f1f6f499f7273b5a7399606b1547a7a0fe0a 2026-09-18T12:56:58,590 Successfully built libsonata 2026-09-18T12:56:58,617 Removed build tracker: '/tmp/pip-build-tracker-_x6ducvc'