2026-09-21T21:41:47,015 Created temporary directory: /tmp/pip-ephem-wheel-cache-_f4b3nct 2026-09-21T21:41:47,017 Created temporary directory: /tmp/pip-build-tracker-rzetrl65 2026-09-21T21:41:47,018 Initialized build tracking at /tmp/pip-build-tracker-rzetrl65 2026-09-21T21:41:47,018 Created build tracker: /tmp/pip-build-tracker-rzetrl65 2026-09-21T21:41:47,019 Entered build tracker: /tmp/pip-build-tracker-rzetrl65 2026-09-21T21:41:47,020 Created temporary directory: /tmp/pip-wheel-5lktitp9 2026-09-21T21:41:47,023 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-21T21:41:47,025 Created temporary directory: /tmp/pip-ephem-wheel-cache-f1_gam3e 2026-09-21T21:41:47,047 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-21T21:41:47,051 2 location(s) to search for versions of scikit-bio: 2026-09-21T21:41:47,051 * https://pypi.org/simple/scikit-bio/ 2026-09-21T21:41:47,051 * https://www.piwheels.org/simple/scikit-bio/ 2026-09-21T21:41:47,051 Fetching project page and analyzing links: https://pypi.org/simple/scikit-bio/ 2026-09-21T21:41:47,052 Getting page https://pypi.org/simple/scikit-bio/ 2026-09-21T21:41:47,054 Found index url https://pypi.org/simple 2026-09-21T21:41:47,309 Fetched page https://pypi.org/simple/scikit-bio/ as application/vnd.pypi.simple.v1+json 2026-09-21T21:41:47,345 Found link https://files.pythonhosted.org/packages/e0/4f/9e53704ce04a5e60511449a5e16511c6e20219ed0932e4aeea84fe2189fd/scikit-bio-0.1.0.tar.gz (from 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https://files.pythonhosted.org/packages/1b/57/8261c53785d6681a291fab7153af97fb33cdd4f0aeb189569496ed248da6/scikit_bio-0.7.3-cp312-cp312-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,444 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/c3/a2/57977ccff57c9706a6deb32ce4c938560f667c7613de6a82fddb2b9af3fb/scikit_bio-0.7.3-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,445 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/4f/ca/5f5752316f836903f9d45c67afcaa839924bdf90c65121aa5a6cb3c6ac0a/scikit_bio-0.7.3-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,445 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/fc/25/ddf8b8f4ea09c3a3224c0f12fc4ade6c119cea929635db8832774df4310c/scikit_bio-0.7.3-cp312-cp312-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,446 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/52/4d/9ed6b34e5e4de1b4056cadbaa3a30cd7a96756fa20bfe7202138366dfce8/scikit_bio-0.7.3-cp313-cp313-macosx_10_13_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,447 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1c/55/932b40255691bd638b4111e0e103459136f646e33d0f5db65d0e2a0a2cc5/scikit_bio-0.7.3-cp313-cp313-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,447 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/d0/f7/396e184e67d7d9ca8ba1ae9a6599acb5aadbf223372f86e2332826e1c21b/scikit_bio-0.7.3-cp313-cp313-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,448 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/3d/a1/6baa127ecec8a291d1cd4503b18abdc7dacf16e5b1ec98eb2a42e9317a76/scikit_bio-0.7.3-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,449 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/ad/62/526eeb742106bf665f0bb3d83d378a6f646cc5683b6da0563991efe3c427/scikit_bio-0.7.3-cp313-cp313-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,449 Skipping link: No binaries permitted for scikit-bio: 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https://files.pythonhosted.org/packages/97/b2/147988bd1af4d7df0dfc50d429eafbe7950c44be85107dec2ef6c3111630/scikit_bio-0.7.3-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,451 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/2c/f7/fc0517930d59d7eca6d3f8ff5c2d770b3b3f312f8148c385c07c6ff79b19/scikit_bio-0.7.3-cp314-cp314-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,452 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/fc/b4/4d312e2dd3e1f958425e09f2e8686b445fdd1e67c9e21b5d404dbca92b57/scikit_bio-0.7.3-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,453 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/01/03/dbe2e0834b509b03afcd26c999991ff6e0ea2a3fd394d6f7c7512ca35939/scikit_bio-0.7.3-cp314-cp314-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,454 Found link https://files.pythonhosted.org/packages/f1/b7/9a349408f2edb09be83a2d105a0c1ecbfcb52d794abfeb601a12a3cc5093/scikit_bio-0.7.3.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10), version: 0.7.3 2026-09-21T21:41:47,454 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/1a/35/5188452586b10615cc4705a13fa4c380c26ee98d395982a57d774ef5275e/scikit_bio-0.7.4-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,455 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/31/45/0c4d90b9d9cbea899df0109cf650e07322b606575bd98e06f1af732d9a73/scikit_bio-0.7.4-cp310-cp310-macosx_11_0_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,456 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/74/b9/fef5973561dd8c70bca2c990f0998759ffbbaffe7be33d94a90bdd57bd17/scikit_bio-0.7.4-cp310-cp310-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,456 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/71/e9/23132e42c1aa973587fa76332d5ad82ba450585bf48341b4379bcd721267/scikit_bio-0.7.4-cp310-cp310-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,457 Skipping link: No binaries permitted for 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https://files.pythonhosted.org/packages/05/5a/8baccfd521f2778ab0c13de8dae6a608af8dea6cacf734c8dce6417c5114/scikit_bio-0.7.4-cp311-cp311-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,459 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/b3/3c/cf20ae987f3c6f8df478fa3c6154b52c4f21be914d7284d72a45b1f0021e/scikit_bio-0.7.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,459 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/37/91/4cb3641d731530e8ace57ee9bd647e613fcf8b14e8008e278e840d22de73/scikit_bio-0.7.4-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,460 Skipping link: No binaries permitted for scikit-bio: 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https://files.pythonhosted.org/packages/c0/8e/521890bb20adbe0f783d0f24413044f17f79120685e41951a836df488190/scikit_bio-0.7.4-cp312-cp312-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,463 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/9c/d2/90ca33da387f61daf7f9eb5597d29e928da04653a264c12f290cbbc10dd3/scikit_bio-0.7.4-cp312-cp312-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,464 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/67/54/25fbf6a500ca83a1580655b6c1dd414e61ec8439fa0b807f2ad56834208b/scikit_bio-0.7.4-cp312-cp312-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,464 Skipping link: No binaries permitted for scikit-bio: 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https://files.pythonhosted.org/packages/2d/8e/6869dcd42ac4d95f89e725a62a558ecc43f7632c894cb1ac201a73bce80b/scikit_bio-0.7.4-cp314-cp314-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,470 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/a1/12/fde4c32e4d312fd5f442f62ef1ed0872f2bd1b376112884a36dfb8e2497d/scikit_bio-0.7.4-cp314-cp314-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,471 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/7e/5d/8c5c92b3b4dabb14324c141da2024144ca1a036aa65ca6159eb37ae22681/scikit_bio-0.7.4-cp314-cp314-win_amd64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,472 Skipping link: No binaries permitted for scikit-bio: https://files.pythonhosted.org/packages/59/7c/7bb261715ce2220d1e648ae8a0a402e4161e297f80c5900713b3a946e24e/scikit_bio-0.7.4-cp314-cp314-win_arm64.whl (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,473 Found link https://files.pythonhosted.org/packages/0a/13/3321503bfc38173c5696e6d66ef6aaeee5689fd9825d0ac58dcf42d0a4e1/scikit_bio-0.7.4.tar.gz (from https://pypi.org/simple/scikit-bio/) (requires-python:>=3.10), version: 0.7.4 2026-09-21T21:41:47,473 Fetching project page and analyzing links: https://www.piwheels.org/simple/scikit-bio/ 2026-09-21T21:41:47,474 Getting page https://www.piwheels.org/simple/scikit-bio/ 2026-09-21T21:41:47,475 Found index url https://www.piwheels.org/simple 2026-09-21T21:41:47,664 Fetched page https://www.piwheels.org/simple/scikit-bio/ as text/html 2026-09-21T21:41:47,680 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.3-cp311-cp311-linux_armv6l.whl#sha256=d9e441f5c0a674a34a5453bdc67a1e0da1f2f28c09f7083aecd5a35c4dc4c7c4 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,680 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.3-cp311-cp311-linux_armv7l.whl#sha256=d9e441f5c0a674a34a5453bdc67a1e0da1f2f28c09f7083aecd5a35c4dc4c7c4 (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,681 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.7.3-cp313-cp313-linux_armv6l.whl#sha256=b3ffe2779f75a1a1b5e04e297165f5ba44507ca7da1e8e84cd81e93891c8027e (from https://www.piwheels.org/simple/scikit-bio/) (requires-python:>=3.10) 2026-09-21T21:41:47,681 Skipping link: No binaries permitted for scikit-bio: 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https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp37-cp37m-linux_armv7l.whl#sha256=6569ab2696b41bc41ae4e94547d0acd136512dab7753942df12b06931a5ed810 (from https://www.piwheels.org/simple/scikit-bio/) 2026-09-21T21:41:47,705 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv6l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2026-09-21T21:41:47,706 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.8-cp39-cp39-linux_armv7l.whl#sha256=7692ae74dbd1b55f55796326c6f3ed2e17028eee9e09eecb0f58d7073e534c52 (from https://www.piwheels.org/simple/scikit-bio/) 2026-09-21T21:41:47,706 Skipping link: No binaries permitted for scikit-bio: 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https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp39-cp39-linux_armv7l.whl#sha256=1fc89935500ef73303aef4292735583d83456271b51534e31497a2d5eb2b8d3b (from https://www.piwheels.org/simple/scikit-bio/) 2026-09-21T21:41:47,709 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv6l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2026-09-21T21:41:47,709 Skipping link: No binaries permitted for scikit-bio: https://archive1.piwheels.org/simple/scikit-bio/scikit_bio-0.5.7-cp37-cp37m-linux_armv7l.whl#sha256=fb1f612aaab958a170d467b2c9a6c1c6c2249bce52c095b7d7b7d8cc07c9ce31 (from https://www.piwheels.org/simple/scikit-bio/) 2026-09-21T21:41:47,710 Skipping link: not a file: https://www.piwheels.org/simple/scikit-bio/ 2026-09-21T21:41:47,710 Skipping link: not a file: https://pypi.org/simple/scikit-bio/ 2026-09-21T21:41:47,733 Given no hashes to check 1 links for project 'scikit-bio': discarding no candidates 2026-09-21T21:41:47,752 Collecting scikit-bio==0.7.4 2026-09-21T21:41:47,754 Created temporary directory: /tmp/pip-unpack-kysaamck 2026-09-21T21:41:47,910 Downloading scikit_bio-0.7.4.tar.gz (6.0 MB) 2026-09-21T21:41:50,673 Added scikit-bio==0.7.4 from https://files.pythonhosted.org/packages/0a/13/3321503bfc38173c5696e6d66ef6aaeee5689fd9825d0ac58dcf42d0a4e1/scikit_bio-0.7.4.tar.gz to build tracker '/tmp/pip-build-tracker-rzetrl65' 2026-09-21T21:41:50,682 Created temporary directory: /tmp/pip-build-env-drvonp2q 2026-09-21T21:41:50,686 Installing build dependencies: started 2026-09-21T21:41:50,688 Running command pip subprocess to install build dependencies 2026-09-21T21:41:51,827 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-09-21T21:41:52,284 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-21T21:41:52,307 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-21T21:41:54,135 Collecting setuptools 2026-09-21T21:41:54,136 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-09-21T21:41:54,150 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-09-21T21:41:54,390 Collecting wheel 2026-09-21T21:41:54,391 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-09-21T21:41:54,405 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-09-21T21:41:55,523 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-09-21T21:41:55,531 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-09-21T21:41:55,539 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-09-21T21:41:55,546 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-09-21T21:41:55,554 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-09-21T21:41:56,036 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/d3/e1/f2fe8f6113a657a1da83b358b16755e528a602c6976a43724a88f42b482a/numpy-2.5.0rc1.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-09-21T21:41:56,046 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/e7/05/3d27272d30698dc0ecb7fdfaa41ad70303b444f81722bb99bce1d818638a/numpy-2.5.0.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-09-21T21:41:56,056 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/22/fd/89965aa4ac08c74998539fcbf24fa3540f3e15237fbeb6bcf9c908f4aade/numpy-2.5.1.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-09-21T21:41:56,070 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/9a/80/db0b4559e57ec36362bedbb05530a87fafbcb6067708c946967a41d449e7/numpy-2.5.2.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-09-21T21:41:56,085 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/13/01/11703282db468b85f6f7b8c7f22d058de5970d5c7e60a3a8aaa313c3de36/numpy-2.5.3.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-09-21T21:41:56,418 Collecting numpy 2026-09-21T21:41:56,419 Obtaining dependency information for numpy from https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata 2026-09-21T21:41:56,437 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata (6.6 kB) 2026-09-21T21:41:58,731 Collecting cython 2026-09-21T21:41:58,732 Obtaining dependency information for cython from https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl.metadata 2026-09-21T21:41:58,748 Using cached https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl.metadata (28 kB) 2026-09-21T21:41:58,762 Discarding https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl#sha256=a6216b5b0b00e864c25ee582a0d29ae651cef2fb300b10673146bc47b5c1b8b1 (from https://www.piwheels.org/simple/cython/) (requires-python:>=3.9): Requested cython from https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl#sha256=a6216b5b0b00e864c25ee582a0d29ae651cef2fb300b10673146bc47b5c1b8b1 has inconsistent Name: expected 'cython', but metadata has 'Cython' 2026-09-21T21:41:58,827 Using cached cython-3.3.0-cp39-abi3-manylinux2014_armv7l.manylinux_2_17_armv7l.manylinux_2_31_armv7l.whl (3.0 MB) 2026-09-21T21:41:59,113 Collecting packaging>=24.0 2026-09-21T21:41:59,114 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-09-21T21:41:59,132 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-09-21T21:41:59,333 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-09-21T21:41:59,794 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-09-21T21:41:59,911 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-21T21:41:59,997 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-21T21:42:00,028 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-09-21T21:42:00,466 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-09-21T21:42:00,664 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-21T21:42:00,737 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-21T21:42:03,575 Installing collected packages: setuptools, packaging, numpy, cython, wheel 2026-09-21T21:42:14,979 Creating /tmp/pip-build-env-drvonp2q/overlay/local/bin 2026-09-21T21:42:14,981 changing mode of /tmp/pip-build-env-drvonp2q/overlay/local/bin/f2py to 755 2026-09-21T21:42:14,983 changing mode of /tmp/pip-build-env-drvonp2q/overlay/local/bin/numpy-config to 755 2026-09-21T21:42:18,260 changing mode of /tmp/pip-build-env-drvonp2q/overlay/local/bin/cygdb to 755 2026-09-21T21:42:18,262 changing mode of /tmp/pip-build-env-drvonp2q/overlay/local/bin/cython to 755 2026-09-21T21:42:18,264 changing mode of /tmp/pip-build-env-drvonp2q/overlay/local/bin/cythonize to 755 2026-09-21T21:42:18,401 changing mode of /tmp/pip-build-env-drvonp2q/overlay/local/bin/wheel to 755 2026-09-21T21:42:18,440 Successfully installed cython-3.3.0 numpy-2.4.6 packaging-26.3 setuptools-84.0.0 wheel-0.48.0 2026-09-21T21:42:18,944 Installing build dependencies: finished with status 'done' 2026-09-21T21:42:18,951 Getting requirements to build wheel: started 2026-09-21T21:42:18,952 Running command Getting requirements to build wheel 2026-09-21T21:42:24,141 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:42:24,146 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:42:24,154 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:42:24,160 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:42:24,168 warning: skbio/alignment/_cutils.pyx:206:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:42:24,173 warning: skbio/alignment/_cutils.pyx:206:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:42:24,180 warning: skbio/alignment/_cutils.pyx:240:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:42:24,186 warning: skbio/alignment/_cutils.pyx:240:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:42:44,623 performance hint: skbio/stats/distance/_cutils.pyx:564:0: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:42:44,623 performance hint: skbio/stats/distance/_cutils.pyx:573:0: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:42:44,624 performance hint: skbio/stats/distance/_cutils.pyx:580:0: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:42:47,671 performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '_dist_euclidean[float64_t[:],float64_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float64_t[:],float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:42:47,675 performance hint: skbio/stats/distance/_cutils.pyx:530:24: Exception check after calling '_sum[float64_t[:]]' will always require the GIL to be acquired. Declare '_sum[float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:42:47,682 performance hint: skbio/stats/distance/_cutils.pyx:547:35: Exception check after calling '_norm_euclidean[float64_t[:]]' will always require the GIL to be acquired. Declare '_norm_euclidean[float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:42:47,687 performance hint: skbio/stats/distance/_cutils.pyx:555:34: Exception check after calling '_dist_euclidean[float64_t[:],float64_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float64_t[:],float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:42:47,704 performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '_dist_euclidean[float32_t[:],float32_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float32_t[:],float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:42:47,709 performance hint: skbio/stats/distance/_cutils.pyx:530:24: Exception check after calling '_sum[float32_t[:]]' will always require the GIL to be acquired. Declare '_sum[float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:42:47,715 performance hint: skbio/stats/distance/_cutils.pyx:547:35: Exception check after calling '_norm_euclidean[float32_t[:]]' will always require the GIL to be acquired. Declare '_norm_euclidean[float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:42:47,720 performance hint: skbio/stats/distance/_cutils.pyx:555:34: Exception check after calling '_dist_euclidean[float32_t[:],float32_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float32_t[:],float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:42:47,725 performance hint: skbio/stats/distance/_cutils.pyx:569:15: Use boundscheck(False) for faster access 2026-09-21T21:42:47,726 performance hint: skbio/stats/distance/_cutils.pyx:569:22: Use boundscheck(False) for faster access 2026-09-21T21:42:47,730 performance hint: skbio/stats/distance/_cutils.pyx:569:15: Use boundscheck(False) for faster access 2026-09-21T21:42:47,731 performance hint: skbio/stats/distance/_cutils.pyx:569:22: Use boundscheck(False) for faster access 2026-09-21T21:42:47,735 performance hint: skbio/stats/distance/_cutils.pyx:577:14: Use boundscheck(False) for faster access 2026-09-21T21:42:47,736 performance hint: skbio/stats/distance/_cutils.pyx:577:21: Use boundscheck(False) for faster access 2026-09-21T21:42:47,740 performance hint: skbio/stats/distance/_cutils.pyx:577:14: Use boundscheck(False) for faster access 2026-09-21T21:42:47,741 performance hint: skbio/stats/distance/_cutils.pyx:577:21: Use boundscheck(False) for faster access 2026-09-21T21:42:47,744 performance hint: skbio/stats/distance/_cutils.pyx:584:18: Use boundscheck(False) for faster access 2026-09-21T21:42:47,747 performance hint: skbio/stats/distance/_cutils.pyx:584:18: Use boundscheck(False) for faster access 2026-09-21T21:42:48,008 [1/7] Cythonizing skbio/alignment/_cutils.pyx 2026-09-21T21:42:48,009 [2/7] Cythonizing skbio/metadata/_intersection.pyx 2026-09-21T21:42:48,009 [3/7] Cythonizing skbio/stats/ordination/_cutils.pyx 2026-09-21T21:42:48,010 [4/7] Cythonizing skbio/tree/_c_me.pyx 2026-09-21T21:42:48,010 [5/7] Cythonizing skbio/tree/_c_nj.pyx 2026-09-21T21:42:48,011 [6/7] Cythonizing skbio/diversity/_phylogenetic.pyx 2026-09-21T21:42:48,011 [7/7] Cythonizing skbio/stats/distance/_cutils.pyx 2026-09-21T21:42:48,226 running egg_info 2026-09-21T21:42:48,234 writing scikit_bio.egg-info/PKG-INFO 2026-09-21T21:42:48,245 writing dependency_links to scikit_bio.egg-info/dependency_links.txt 2026-09-21T21:42:48,250 writing requirements to scikit_bio.egg-info/requires.txt 2026-09-21T21:42:48,251 writing top-level names to scikit_bio.egg-info/top_level.txt 2026-09-21T21:42:48,275 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:42:48,275 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:42:48,276 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:42:48,276 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:42:48,277 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:42:48,282 reading manifest file 'scikit_bio.egg-info/SOURCES.txt' 2026-09-21T21:42:48,416 reading manifest template 'MANIFEST.in' 2026-09-21T21:42:48,489 no previously-included directories found matching 'doc/build' 2026-09-21T21:42:48,493 no previously-included directories found matching 'doc/source/generated' 2026-09-21T21:42:48,496 no previously-included directories found matching 'web/_build' 2026-09-21T21:42:48,502 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-09-21T21:42:48,508 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-09-21T21:42:48,515 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-09-21T21:42:48,520 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2026-09-21T21:42:48,526 warning: no previously-included files matching '.coverage' found anywhere in distribution 2026-09-21T21:42:48,526 adding license file 'LICENSE.txt' 2026-09-21T21:42:48,573 writing manifest file 'scikit_bio.egg-info/SOURCES.txt' 2026-09-21T21:42:49,814 Getting requirements to build wheel: finished with status 'done' 2026-09-21T21:42:49,818 Created temporary directory: /tmp/pip-modern-metadata-rx6fxuot 2026-09-21T21:42:49,820 Preparing metadata (pyproject.toml): started 2026-09-21T21:42:49,821 Running command Preparing metadata (pyproject.toml) 2026-09-21T21:42:54,892 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:42:54,897 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:42:54,905 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:42:54,911 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:42:54,920 warning: skbio/alignment/_cutils.pyx:206:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:42:54,924 warning: skbio/alignment/_cutils.pyx:206:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:42:54,931 warning: skbio/alignment/_cutils.pyx:240:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:42:54,937 warning: skbio/alignment/_cutils.pyx:240:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:43:15,387 performance hint: skbio/stats/distance/_cutils.pyx:564:0: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:15,388 performance hint: skbio/stats/distance/_cutils.pyx:573:0: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:15,389 performance hint: skbio/stats/distance/_cutils.pyx:580:0: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:18,443 performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '_dist_euclidean[float64_t[:],float64_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float64_t[:],float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:18,448 performance hint: skbio/stats/distance/_cutils.pyx:530:24: Exception check after calling '_sum[float64_t[:]]' will always require the GIL to be acquired. Declare '_sum[float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:18,454 performance hint: skbio/stats/distance/_cutils.pyx:547:35: Exception check after calling '_norm_euclidean[float64_t[:]]' will always require the GIL to be acquired. Declare '_norm_euclidean[float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:18,459 performance hint: skbio/stats/distance/_cutils.pyx:555:34: Exception check after calling '_dist_euclidean[float64_t[:],float64_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float64_t[:],float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:18,476 performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '_dist_euclidean[float32_t[:],float32_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float32_t[:],float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:18,480 performance hint: skbio/stats/distance/_cutils.pyx:530:24: Exception check after calling '_sum[float32_t[:]]' will always require the GIL to be acquired. Declare '_sum[float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:18,487 performance hint: skbio/stats/distance/_cutils.pyx:547:35: Exception check after calling '_norm_euclidean[float32_t[:]]' will always require the GIL to be acquired. Declare '_norm_euclidean[float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:18,491 performance hint: skbio/stats/distance/_cutils.pyx:555:34: Exception check after calling '_dist_euclidean[float32_t[:],float32_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float32_t[:],float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:18,496 performance hint: skbio/stats/distance/_cutils.pyx:569:15: Use boundscheck(False) for faster access 2026-09-21T21:43:18,497 performance hint: skbio/stats/distance/_cutils.pyx:569:22: Use boundscheck(False) for faster access 2026-09-21T21:43:18,501 performance hint: skbio/stats/distance/_cutils.pyx:569:15: Use boundscheck(False) for faster access 2026-09-21T21:43:18,502 performance hint: skbio/stats/distance/_cutils.pyx:569:22: Use boundscheck(False) for faster access 2026-09-21T21:43:18,505 performance hint: skbio/stats/distance/_cutils.pyx:577:14: Use boundscheck(False) for faster access 2026-09-21T21:43:18,506 performance hint: skbio/stats/distance/_cutils.pyx:577:21: Use boundscheck(False) for faster access 2026-09-21T21:43:18,509 performance hint: skbio/stats/distance/_cutils.pyx:577:14: Use boundscheck(False) for faster access 2026-09-21T21:43:18,510 performance hint: skbio/stats/distance/_cutils.pyx:577:21: Use boundscheck(False) for faster access 2026-09-21T21:43:18,513 performance hint: skbio/stats/distance/_cutils.pyx:584:18: Use boundscheck(False) for faster access 2026-09-21T21:43:18,516 performance hint: skbio/stats/distance/_cutils.pyx:584:18: Use boundscheck(False) for faster access 2026-09-21T21:43:18,782 [1/7] Cythonizing skbio/alignment/_cutils.pyx 2026-09-21T21:43:18,783 [2/7] Cythonizing skbio/metadata/_intersection.pyx 2026-09-21T21:43:18,783 [3/7] Cythonizing skbio/stats/ordination/_cutils.pyx 2026-09-21T21:43:18,784 [4/7] Cythonizing skbio/tree/_c_me.pyx 2026-09-21T21:43:18,784 [5/7] Cythonizing skbio/tree/_c_nj.pyx 2026-09-21T21:43:18,785 [6/7] Cythonizing skbio/diversity/_phylogenetic.pyx 2026-09-21T21:43:18,785 [7/7] Cythonizing skbio/stats/distance/_cutils.pyx 2026-09-21T21:43:18,978 running dist_info 2026-09-21T21:43:18,991 creating /tmp/pip-modern-metadata-rx6fxuot/scikit_bio.egg-info 2026-09-21T21:43:18,993 writing /tmp/pip-modern-metadata-rx6fxuot/scikit_bio.egg-info/PKG-INFO 2026-09-21T21:43:19,003 writing dependency_links to /tmp/pip-modern-metadata-rx6fxuot/scikit_bio.egg-info/dependency_links.txt 2026-09-21T21:43:19,009 writing requirements to /tmp/pip-modern-metadata-rx6fxuot/scikit_bio.egg-info/requires.txt 2026-09-21T21:43:19,010 writing top-level names to /tmp/pip-modern-metadata-rx6fxuot/scikit_bio.egg-info/top_level.txt 2026-09-21T21:43:19,011 writing manifest file '/tmp/pip-modern-metadata-rx6fxuot/scikit_bio.egg-info/SOURCES.txt' 2026-09-21T21:43:19,033 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:43:19,034 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:43:19,035 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:43:19,035 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:43:19,036 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:43:19,041 reading manifest file '/tmp/pip-modern-metadata-rx6fxuot/scikit_bio.egg-info/SOURCES.txt' 2026-09-21T21:43:19,043 reading manifest template 'MANIFEST.in' 2026-09-21T21:43:19,226 no previously-included directories found matching 'doc/build' 2026-09-21T21:43:19,229 no previously-included directories found matching 'doc/source/generated' 2026-09-21T21:43:19,232 no previously-included directories found matching 'web/_build' 2026-09-21T21:43:19,238 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-09-21T21:43:19,243 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-09-21T21:43:19,248 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-09-21T21:43:19,252 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2026-09-21T21:43:19,255 warning: no previously-included files matching '.coverage' found anywhere in distribution 2026-09-21T21:43:19,256 adding license file 'LICENSE.txt' 2026-09-21T21:43:19,288 writing manifest file '/tmp/pip-modern-metadata-rx6fxuot/scikit_bio.egg-info/SOURCES.txt' 2026-09-21T21:43:19,291 creating '/tmp/pip-modern-metadata-rx6fxuot/scikit_bio-0.7.4.dist-info' 2026-09-21T21:43:20,565 Preparing metadata (pyproject.toml): finished with status 'done' 2026-09-21T21:43:20,571 Source in /tmp/pip-wheel-5lktitp9/scikit-bio_7da77f10aa2642289090b8472e8816fc has version 0.7.4, which satisfies requirement scikit-bio==0.7.4 from https://files.pythonhosted.org/packages/0a/13/3321503bfc38173c5696e6d66ef6aaeee5689fd9825d0ac58dcf42d0a4e1/scikit_bio-0.7.4.tar.gz 2026-09-21T21:43:20,573 Removed scikit-bio==0.7.4 from https://files.pythonhosted.org/packages/0a/13/3321503bfc38173c5696e6d66ef6aaeee5689fd9825d0ac58dcf42d0a4e1/scikit_bio-0.7.4.tar.gz from build tracker '/tmp/pip-build-tracker-rzetrl65' 2026-09-21T21:43:20,579 Created temporary directory: /tmp/pip-unpack-5h7zpz_2 2026-09-21T21:43:20,580 Building wheels for collected packages: scikit-bio 2026-09-21T21:43:20,584 Created temporary directory: /tmp/pip-wheel-groe8ys9 2026-09-21T21:43:20,585 Destination directory: /tmp/pip-wheel-groe8ys9 2026-09-21T21:43:20,587 Building wheel for scikit-bio (pyproject.toml): started 2026-09-21T21:43:20,588 Running command Building wheel for scikit-bio (pyproject.toml) 2026-09-21T21:43:25,609 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:43:25,613 warning: skbio/alignment/_cutils.pyx:103:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:43:25,622 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:43:25,627 warning: skbio/alignment/_cutils.pyx:157:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:43:25,636 warning: skbio/alignment/_cutils.pyx:206:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:43:25,640 warning: skbio/alignment/_cutils.pyx:206:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:43:25,647 warning: skbio/alignment/_cutils.pyx:240:14: Assigning to 'float *' from 'const float *' discards const qualifier 2026-09-21T21:43:25,653 warning: skbio/alignment/_cutils.pyx:240:14: Assigning to 'double *' from 'const double *' discards const qualifier 2026-09-21T21:43:46,044 performance hint: skbio/stats/distance/_cutils.pyx:564:0: Exception check on '_dist_euclidean' will always require the GIL to be acquired. Declare '_dist_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:46,045 performance hint: skbio/stats/distance/_cutils.pyx:573:0: Exception check on '_norm_euclidean' will always require the GIL to be acquired. Declare '_norm_euclidean' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:46,046 performance hint: skbio/stats/distance/_cutils.pyx:580:0: Exception check on '_sum' will always require the GIL to be acquired. Declare '_sum' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:49,095 performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '_dist_euclidean[float64_t[:],float64_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float64_t[:],float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:49,101 performance hint: skbio/stats/distance/_cutils.pyx:530:24: Exception check after calling '_sum[float64_t[:]]' will always require the GIL to be acquired. Declare '_sum[float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:49,108 performance hint: skbio/stats/distance/_cutils.pyx:547:35: Exception check after calling '_norm_euclidean[float64_t[:]]' will always require the GIL to be acquired. Declare '_norm_euclidean[float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:49,112 performance hint: skbio/stats/distance/_cutils.pyx:555:34: Exception check after calling '_dist_euclidean[float64_t[:],float64_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float64_t[:],float64_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:49,130 performance hint: skbio/stats/distance/_cutils.pyx:510:36: Exception check after calling '_dist_euclidean[float32_t[:],float32_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float32_t[:],float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:49,135 performance hint: skbio/stats/distance/_cutils.pyx:530:24: Exception check after calling '_sum[float32_t[:]]' will always require the GIL to be acquired. Declare '_sum[float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:49,141 performance hint: skbio/stats/distance/_cutils.pyx:547:35: Exception check after calling '_norm_euclidean[float32_t[:]]' will always require the GIL to be acquired. Declare '_norm_euclidean[float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:49,146 performance hint: skbio/stats/distance/_cutils.pyx:555:34: Exception check after calling '_dist_euclidean[float32_t[:],float32_t[:]]' will always require the GIL to be acquired. Declare '_dist_euclidean[float32_t[:],float32_t[:]]' as 'noexcept' if you control the definition and you're sure you don't want the function to raise exceptions. 2026-09-21T21:43:49,151 performance hint: skbio/stats/distance/_cutils.pyx:569:15: Use boundscheck(False) for faster access 2026-09-21T21:43:49,153 performance hint: skbio/stats/distance/_cutils.pyx:569:22: Use boundscheck(False) for faster access 2026-09-21T21:43:49,157 performance hint: skbio/stats/distance/_cutils.pyx:569:15: Use boundscheck(False) for faster access 2026-09-21T21:43:49,158 performance hint: skbio/stats/distance/_cutils.pyx:569:22: Use boundscheck(False) for faster access 2026-09-21T21:43:49,162 performance hint: skbio/stats/distance/_cutils.pyx:577:14: Use boundscheck(False) for faster access 2026-09-21T21:43:49,163 performance hint: skbio/stats/distance/_cutils.pyx:577:21: Use boundscheck(False) for faster access 2026-09-21T21:43:49,167 performance hint: skbio/stats/distance/_cutils.pyx:577:14: Use boundscheck(False) for faster access 2026-09-21T21:43:49,168 performance hint: skbio/stats/distance/_cutils.pyx:577:21: Use boundscheck(False) for faster access 2026-09-21T21:43:49,171 performance hint: skbio/stats/distance/_cutils.pyx:584:18: Use boundscheck(False) for faster access 2026-09-21T21:43:49,175 performance hint: skbio/stats/distance/_cutils.pyx:584:18: Use boundscheck(False) for faster access 2026-09-21T21:43:49,445 [1/7] Cythonizing skbio/alignment/_cutils.pyx 2026-09-21T21:43:49,446 [2/7] Cythonizing skbio/metadata/_intersection.pyx 2026-09-21T21:43:49,447 [3/7] Cythonizing skbio/stats/ordination/_cutils.pyx 2026-09-21T21:43:49,447 [4/7] Cythonizing skbio/tree/_c_me.pyx 2026-09-21T21:43:49,448 [5/7] Cythonizing skbio/tree/_c_nj.pyx 2026-09-21T21:43:49,449 [6/7] Cythonizing skbio/diversity/_phylogenetic.pyx 2026-09-21T21:43:49,449 [7/7] Cythonizing skbio/stats/distance/_cutils.pyx 2026-09-21T21:43:49,624 running bdist_wheel 2026-09-21T21:43:49,647 running build 2026-09-21T21:43:49,648 running build_py 2026-09-21T21:43:49,656 creating build/lib.linux-armv7l-cpython-311/skbio 2026-09-21T21:43:49,659 copying skbio/_base.py -> build/lib.linux-armv7l-cpython-311/skbio 2026-09-21T21:43:49,661 copying skbio/test.py -> build/lib.linux-armv7l-cpython-311/skbio 2026-09-21T21:43:49,663 copying skbio/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio 2026-09-21T21:43:49,666 copying skbio/_config.py -> build/lib.linux-armv7l-cpython-311/skbio 2026-09-21T21:43:49,669 copying skbio/workflow.py -> build/lib.linux-armv7l-cpython-311/skbio 2026-09-21T21:43:49,671 running egg_info 2026-09-21T21:43:49,684 writing scikit_bio.egg-info/PKG-INFO 2026-09-21T21:43:49,694 writing dependency_links to scikit_bio.egg-info/dependency_links.txt 2026-09-21T21:43:49,700 writing requirements to scikit_bio.egg-info/requires.txt 2026-09-21T21:43:49,701 writing top-level names to scikit_bio.egg-info/top_level.txt 2026-09-21T21:43:49,707 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:43:49,707 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:43:49,708 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:43:49,708 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:43:49,709 dependency /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-09-21T21:43:49,715 reading manifest file 'scikit_bio.egg-info/SOURCES.txt' 2026-09-21T21:43:49,876 reading manifest template 'MANIFEST.in' 2026-09-21T21:43:49,928 no previously-included directories found matching 'doc/build' 2026-09-21T21:43:49,932 no previously-included directories found matching 'doc/source/generated' 2026-09-21T21:43:49,936 no previously-included directories found matching 'web/_build' 2026-09-21T21:43:49,942 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-09-21T21:43:49,949 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-09-21T21:43:49,956 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-09-21T21:43:49,961 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2026-09-21T21:43:49,967 warning: no previously-included files matching '.coverage' found anywhere in distribution 2026-09-21T21:43:49,968 adding license file 'LICENSE.txt' 2026-09-21T21:43:50,014 writing manifest file 'scikit_bio.egg-info/SOURCES.txt' 2026-09-21T21:43:50,019 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.alignment' is absent from the `packages` configuration. 2026-09-21T21:43:50,020 !! 2026-09-21T21:43:50,021 ******************************************************************************** 2026-09-21T21:43:50,022 ############################ 2026-09-21T21:43:50,022 # Package would be ignored # 2026-09-21T21:43:50,023 ############################ 2026-09-21T21:43:50,024 Python recognizes 'skbio.alignment' as an importable package[^1], 2026-09-21T21:43:50,024 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,026 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,026 package, please make sure that 'skbio.alignment' is explicitly added 2026-09-21T21:43:50,026 to the `packages` configuration field. 2026-09-21T21:43:50,027 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,028 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,028 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,029 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,030 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,030 If you don't want 'skbio.alignment' to be distributed and are 2026-09-21T21:43:50,031 already explicitly excluding 'skbio.alignment' via 2026-09-21T21:43:50,031 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,032 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,032 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,033 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,034 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,035 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,035 even if it does not contain any `.py` files. 2026-09-21T21:43:50,036 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,036 directory, all directories are treated like packages. 2026-09-21T21:43:50,037 ******************************************************************************** 2026-09-21T21:43:50,038 !! 2026-09-21T21:43:50,039 check.warn(importable) 2026-09-21T21:43:50,040 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.alignment.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,040 !! 2026-09-21T21:43:50,042 ******************************************************************************** 2026-09-21T21:43:50,042 ############################ 2026-09-21T21:43:50,043 # Package would be ignored # 2026-09-21T21:43:50,044 ############################ 2026-09-21T21:43:50,044 Python recognizes 'skbio.alignment.tests' as an importable package[^1], 2026-09-21T21:43:50,045 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,046 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,047 package, please make sure that 'skbio.alignment.tests' is explicitly added 2026-09-21T21:43:50,047 to the `packages` configuration field. 2026-09-21T21:43:50,048 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,049 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,049 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,050 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,051 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,052 If you don't want 'skbio.alignment.tests' to be distributed and are 2026-09-21T21:43:50,053 already explicitly excluding 'skbio.alignment.tests' via 2026-09-21T21:43:50,054 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,054 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,055 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,056 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,057 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,058 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,059 even if it does not contain any `.py` files. 2026-09-21T21:43:50,059 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,059 directory, all directories are treated like packages. 2026-09-21T21:43:50,060 ******************************************************************************** 2026-09-21T21:43:50,061 !! 2026-09-21T21:43:50,061 check.warn(importable) 2026-09-21T21:43:50,061 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.alignment.tests.data' is absent from the `packages` configuration. 2026-09-21T21:43:50,062 !! 2026-09-21T21:43:50,063 ******************************************************************************** 2026-09-21T21:43:50,063 ############################ 2026-09-21T21:43:50,064 # Package would be ignored # 2026-09-21T21:43:50,064 ############################ 2026-09-21T21:43:50,064 Python recognizes 'skbio.alignment.tests.data' as an importable package[^1], 2026-09-21T21:43:50,065 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,066 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,066 package, please make sure that 'skbio.alignment.tests.data' is explicitly added 2026-09-21T21:43:50,067 to the `packages` configuration field. 2026-09-21T21:43:50,068 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,069 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,070 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,071 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,072 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,073 If you don't want 'skbio.alignment.tests.data' to be distributed and are 2026-09-21T21:43:50,074 already explicitly excluding 'skbio.alignment.tests.data' via 2026-09-21T21:43:50,075 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,075 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,076 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,077 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,078 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,081 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,081 even if it does not contain any `.py` files. 2026-09-21T21:43:50,082 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,083 directory, all directories are treated like packages. 2026-09-21T21:43:50,084 ******************************************************************************** 2026-09-21T21:43:50,086 !! 2026-09-21T21:43:50,087 check.warn(importable) 2026-09-21T21:43:50,088 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.binaries' is absent from the `packages` configuration. 2026-09-21T21:43:50,089 !! 2026-09-21T21:43:50,091 ******************************************************************************** 2026-09-21T21:43:50,093 ############################ 2026-09-21T21:43:50,095 # Package would be ignored # 2026-09-21T21:43:50,096 ############################ 2026-09-21T21:43:50,097 Python recognizes 'skbio.binaries' as an importable package[^1], 2026-09-21T21:43:50,098 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,100 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,101 package, please make sure that 'skbio.binaries' is explicitly added 2026-09-21T21:43:50,102 to the `packages` configuration field. 2026-09-21T21:43:50,105 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,106 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,107 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,110 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,110 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,111 If you don't want 'skbio.binaries' to be distributed and are 2026-09-21T21:43:50,112 already explicitly excluding 'skbio.binaries' via 2026-09-21T21:43:50,112 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,113 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,113 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,114 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,115 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,118 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,119 even if it does not contain any `.py` files. 2026-09-21T21:43:50,120 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,121 directory, all directories are treated like packages. 2026-09-21T21:43:50,122 ******************************************************************************** 2026-09-21T21:43:50,123 !! 2026-09-21T21:43:50,124 check.warn(importable) 2026-09-21T21:43:50,124 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.binaries.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,125 !! 2026-09-21T21:43:50,126 ******************************************************************************** 2026-09-21T21:43:50,126 ############################ 2026-09-21T21:43:50,127 # Package would be ignored # 2026-09-21T21:43:50,127 ############################ 2026-09-21T21:43:50,127 Python recognizes 'skbio.binaries.tests' as an importable package[^1], 2026-09-21T21:43:50,128 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,129 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,129 package, please make sure that 'skbio.binaries.tests' is explicitly added 2026-09-21T21:43:50,130 to the `packages` configuration field. 2026-09-21T21:43:50,131 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,131 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,132 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,133 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,134 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,135 If you don't want 'skbio.binaries.tests' to be distributed and are 2026-09-21T21:43:50,135 already explicitly excluding 'skbio.binaries.tests' via 2026-09-21T21:43:50,136 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,136 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,136 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,137 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,137 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,139 even if it does not contain any `.py` files. 2026-09-21T21:43:50,139 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,139 directory, all directories are treated like packages. 2026-09-21T21:43:50,145 ******************************************************************************** 2026-09-21T21:43:50,146 !! 2026-09-21T21:43:50,146 check.warn(importable) 2026-09-21T21:43:50,146 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity' is absent from the `packages` configuration. 2026-09-21T21:43:50,147 !! 2026-09-21T21:43:50,147 ******************************************************************************** 2026-09-21T21:43:50,148 ############################ 2026-09-21T21:43:50,148 # Package would be ignored # 2026-09-21T21:43:50,149 ############################ 2026-09-21T21:43:50,149 Python recognizes 'skbio.diversity' as an importable package[^1], 2026-09-21T21:43:50,150 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,151 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,152 package, please make sure that 'skbio.diversity' is explicitly added 2026-09-21T21:43:50,152 to the `packages` configuration field. 2026-09-21T21:43:50,153 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,154 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,155 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,156 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,158 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,159 If you don't want 'skbio.diversity' to be distributed and are 2026-09-21T21:43:50,160 already explicitly excluding 'skbio.diversity' via 2026-09-21T21:43:50,161 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,162 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,162 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,164 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,166 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,171 even if it does not contain any `.py` files. 2026-09-21T21:43:50,172 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,173 directory, all directories are treated like packages. 2026-09-21T21:43:50,174 ******************************************************************************** 2026-09-21T21:43:50,175 !! 2026-09-21T21:43:50,176 check.warn(importable) 2026-09-21T21:43:50,211 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.alpha' is absent from the `packages` configuration. 2026-09-21T21:43:50,212 !! 2026-09-21T21:43:50,213 ******************************************************************************** 2026-09-21T21:43:50,213 ############################ 2026-09-21T21:43:50,214 # Package would be ignored # 2026-09-21T21:43:50,215 ############################ 2026-09-21T21:43:50,215 Python recognizes 'skbio.diversity.alpha' as an importable package[^1], 2026-09-21T21:43:50,216 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,218 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,218 package, please make sure that 'skbio.diversity.alpha' is explicitly added 2026-09-21T21:43:50,219 to the `packages` configuration field. 2026-09-21T21:43:50,221 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,221 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,222 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,224 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,224 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,226 If you don't want 'skbio.diversity.alpha' to be distributed and are 2026-09-21T21:43:50,226 already explicitly excluding 'skbio.diversity.alpha' via 2026-09-21T21:43:50,227 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,228 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,228 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,230 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,232 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,235 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,235 even if it does not contain any `.py` files. 2026-09-21T21:43:50,236 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,237 directory, all directories are treated like packages. 2026-09-21T21:43:50,239 ******************************************************************************** 2026-09-21T21:43:50,241 !! 2026-09-21T21:43:50,242 check.warn(importable) 2026-09-21T21:43:50,243 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.alpha.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,244 !! 2026-09-21T21:43:50,246 ******************************************************************************** 2026-09-21T21:43:50,247 ############################ 2026-09-21T21:43:50,247 # Package would be ignored # 2026-09-21T21:43:50,248 ############################ 2026-09-21T21:43:50,248 Python recognizes 'skbio.diversity.alpha.tests' as an importable package[^1], 2026-09-21T21:43:50,249 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,250 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,250 package, please make sure that 'skbio.diversity.alpha.tests' is explicitly added 2026-09-21T21:43:50,251 to the `packages` configuration field. 2026-09-21T21:43:50,252 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,252 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,253 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,254 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,254 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,255 If you don't want 'skbio.diversity.alpha.tests' to be distributed and are 2026-09-21T21:43:50,256 already explicitly excluding 'skbio.diversity.alpha.tests' via 2026-09-21T21:43:50,256 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,256 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,257 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,257 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,258 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,259 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,259 even if it does not contain any `.py` files. 2026-09-21T21:43:50,260 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,260 directory, all directories are treated like packages. 2026-09-21T21:43:50,261 ******************************************************************************** 2026-09-21T21:43:50,262 !! 2026-09-21T21:43:50,262 check.warn(importable) 2026-09-21T21:43:50,262 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.alpha.tests.data' is absent from the `packages` configuration. 2026-09-21T21:43:50,263 !! 2026-09-21T21:43:50,264 ******************************************************************************** 2026-09-21T21:43:50,264 ############################ 2026-09-21T21:43:50,264 # Package would be ignored # 2026-09-21T21:43:50,265 ############################ 2026-09-21T21:43:50,265 Python recognizes 'skbio.diversity.alpha.tests.data' as an importable package[^1], 2026-09-21T21:43:50,266 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,267 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,268 package, please make sure that 'skbio.diversity.alpha.tests.data' is explicitly added 2026-09-21T21:43:50,268 to the `packages` configuration field. 2026-09-21T21:43:50,269 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,269 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,270 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,271 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,272 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,272 If you don't want 'skbio.diversity.alpha.tests.data' to be distributed and are 2026-09-21T21:43:50,273 already explicitly excluding 'skbio.diversity.alpha.tests.data' via 2026-09-21T21:43:50,273 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,274 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,274 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,275 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,276 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,279 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,280 even if it does not contain any `.py` files. 2026-09-21T21:43:50,280 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,281 directory, all directories are treated like packages. 2026-09-21T21:43:50,281 ******************************************************************************** 2026-09-21T21:43:50,282 !! 2026-09-21T21:43:50,282 check.warn(importable) 2026-09-21T21:43:50,283 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.beta' is absent from the `packages` configuration. 2026-09-21T21:43:50,283 !! 2026-09-21T21:43:50,284 ******************************************************************************** 2026-09-21T21:43:50,285 ############################ 2026-09-21T21:43:50,285 # Package would be ignored # 2026-09-21T21:43:50,285 ############################ 2026-09-21T21:43:50,286 Python recognizes 'skbio.diversity.beta' as an importable package[^1], 2026-09-21T21:43:50,286 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,287 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,287 package, please make sure that 'skbio.diversity.beta' is explicitly added 2026-09-21T21:43:50,288 to the `packages` configuration field. 2026-09-21T21:43:50,288 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,289 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,289 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,290 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,291 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,292 If you don't want 'skbio.diversity.beta' to be distributed and are 2026-09-21T21:43:50,293 already explicitly excluding 'skbio.diversity.beta' via 2026-09-21T21:43:50,293 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,293 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,294 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,295 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,296 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,298 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,298 even if it does not contain any `.py` files. 2026-09-21T21:43:50,298 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,299 directory, all directories are treated like packages. 2026-09-21T21:43:50,299 ******************************************************************************** 2026-09-21T21:43:50,300 !! 2026-09-21T21:43:50,301 check.warn(importable) 2026-09-21T21:43:50,301 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.beta.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,301 !! 2026-09-21T21:43:50,302 ******************************************************************************** 2026-09-21T21:43:50,303 ############################ 2026-09-21T21:43:50,303 # Package would be ignored # 2026-09-21T21:43:50,304 ############################ 2026-09-21T21:43:50,304 Python recognizes 'skbio.diversity.beta.tests' as an importable package[^1], 2026-09-21T21:43:50,305 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,306 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,306 package, please make sure that 'skbio.diversity.beta.tests' is explicitly added 2026-09-21T21:43:50,306 to the `packages` configuration field. 2026-09-21T21:43:50,307 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,308 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,308 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,309 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,309 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,310 If you don't want 'skbio.diversity.beta.tests' to be distributed and are 2026-09-21T21:43:50,310 already explicitly excluding 'skbio.diversity.beta.tests' via 2026-09-21T21:43:50,311 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,311 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,312 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,312 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,313 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,315 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,315 even if it does not contain any `.py` files. 2026-09-21T21:43:50,316 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,316 directory, all directories are treated like packages. 2026-09-21T21:43:50,317 ******************************************************************************** 2026-09-21T21:43:50,318 !! 2026-09-21T21:43:50,319 check.warn(importable) 2026-09-21T21:43:50,319 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.beta.tests.data' is absent from the `packages` configuration. 2026-09-21T21:43:50,320 !! 2026-09-21T21:43:50,321 ******************************************************************************** 2026-09-21T21:43:50,321 ############################ 2026-09-21T21:43:50,322 # Package would be ignored # 2026-09-21T21:43:50,322 ############################ 2026-09-21T21:43:50,323 Python recognizes 'skbio.diversity.beta.tests.data' as an importable package[^1], 2026-09-21T21:43:50,323 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,324 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,325 package, please make sure that 'skbio.diversity.beta.tests.data' is explicitly added 2026-09-21T21:43:50,325 to the `packages` configuration field. 2026-09-21T21:43:50,326 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,327 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,327 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,328 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,329 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,330 If you don't want 'skbio.diversity.beta.tests.data' to be distributed and are 2026-09-21T21:43:50,331 already explicitly excluding 'skbio.diversity.beta.tests.data' via 2026-09-21T21:43:50,331 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,332 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,333 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,333 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,334 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,335 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,335 even if it does not contain any `.py` files. 2026-09-21T21:43:50,336 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,336 directory, all directories are treated like packages. 2026-09-21T21:43:50,336 ******************************************************************************** 2026-09-21T21:43:50,337 !! 2026-09-21T21:43:50,338 check.warn(importable) 2026-09-21T21:43:50,338 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.diversity.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,338 !! 2026-09-21T21:43:50,339 ******************************************************************************** 2026-09-21T21:43:50,339 ############################ 2026-09-21T21:43:50,340 # Package would be ignored # 2026-09-21T21:43:50,340 ############################ 2026-09-21T21:43:50,341 Python recognizes 'skbio.diversity.tests' as an importable package[^1], 2026-09-21T21:43:50,341 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,342 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,343 package, please make sure that 'skbio.diversity.tests' is explicitly added 2026-09-21T21:43:50,343 to the `packages` configuration field. 2026-09-21T21:43:50,344 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,345 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,345 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,347 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,348 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,349 If you don't want 'skbio.diversity.tests' to be distributed and are 2026-09-21T21:43:50,349 already explicitly excluding 'skbio.diversity.tests' via 2026-09-21T21:43:50,350 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,350 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,351 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,352 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,353 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,355 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,355 even if it does not contain any `.py` files. 2026-09-21T21:43:50,356 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,356 directory, all directories are treated like packages. 2026-09-21T21:43:50,357 ******************************************************************************** 2026-09-21T21:43:50,358 !! 2026-09-21T21:43:50,358 check.warn(importable) 2026-09-21T21:43:50,359 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.embedding' is absent from the `packages` configuration. 2026-09-21T21:43:50,360 !! 2026-09-21T21:43:50,361 ******************************************************************************** 2026-09-21T21:43:50,361 ############################ 2026-09-21T21:43:50,362 # Package would be ignored # 2026-09-21T21:43:50,362 ############################ 2026-09-21T21:43:50,362 Python recognizes 'skbio.embedding' as an importable package[^1], 2026-09-21T21:43:50,363 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,363 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,364 package, please make sure that 'skbio.embedding' is explicitly added 2026-09-21T21:43:50,364 to the `packages` configuration field. 2026-09-21T21:43:50,365 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,365 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,365 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,366 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,367 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,368 If you don't want 'skbio.embedding' to be distributed and are 2026-09-21T21:43:50,368 already explicitly excluding 'skbio.embedding' via 2026-09-21T21:43:50,368 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,369 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,369 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,370 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,371 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,373 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,374 even if it does not contain any `.py` files. 2026-09-21T21:43:50,374 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,375 directory, all directories are treated like packages. 2026-09-21T21:43:50,375 ******************************************************************************** 2026-09-21T21:43:50,376 !! 2026-09-21T21:43:50,377 check.warn(importable) 2026-09-21T21:43:50,378 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.embedding.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,378 !! 2026-09-21T21:43:50,379 ******************************************************************************** 2026-09-21T21:43:50,380 ############################ 2026-09-21T21:43:50,380 # Package would be ignored # 2026-09-21T21:43:50,381 ############################ 2026-09-21T21:43:50,381 Python recognizes 'skbio.embedding.tests' as an importable package[^1], 2026-09-21T21:43:50,382 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,382 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,383 package, please make sure that 'skbio.embedding.tests' is explicitly added 2026-09-21T21:43:50,383 to the `packages` configuration field. 2026-09-21T21:43:50,384 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,385 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,386 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,387 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,388 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,388 If you don't want 'skbio.embedding.tests' to be distributed and are 2026-09-21T21:43:50,389 already explicitly excluding 'skbio.embedding.tests' via 2026-09-21T21:43:50,389 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,389 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,390 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,390 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,391 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,392 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,392 even if it does not contain any `.py` files. 2026-09-21T21:43:50,393 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,393 directory, all directories are treated like packages. 2026-09-21T21:43:50,393 ******************************************************************************** 2026-09-21T21:43:50,394 !! 2026-09-21T21:43:50,394 check.warn(importable) 2026-09-21T21:43:50,395 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.embedding.tests.data' is absent from the `packages` configuration. 2026-09-21T21:43:50,395 !! 2026-09-21T21:43:50,396 ******************************************************************************** 2026-09-21T21:43:50,397 ############################ 2026-09-21T21:43:50,397 # Package would be ignored # 2026-09-21T21:43:50,398 ############################ 2026-09-21T21:43:50,398 Python recognizes 'skbio.embedding.tests.data' as an importable package[^1], 2026-09-21T21:43:50,399 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,400 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,400 package, please make sure that 'skbio.embedding.tests.data' is explicitly added 2026-09-21T21:43:50,400 to the `packages` configuration field. 2026-09-21T21:43:50,402 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,402 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,403 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,404 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,404 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,405 If you don't want 'skbio.embedding.tests.data' to be distributed and are 2026-09-21T21:43:50,406 already explicitly excluding 'skbio.embedding.tests.data' via 2026-09-21T21:43:50,406 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,407 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,407 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,408 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,409 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,410 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,411 even if it does not contain any `.py` files. 2026-09-21T21:43:50,411 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,412 directory, all directories are treated like packages. 2026-09-21T21:43:50,412 ******************************************************************************** 2026-09-21T21:43:50,413 !! 2026-09-21T21:43:50,414 check.warn(importable) 2026-09-21T21:43:50,414 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io' is absent from the `packages` configuration. 2026-09-21T21:43:50,414 !! 2026-09-21T21:43:50,415 ******************************************************************************** 2026-09-21T21:43:50,415 ############################ 2026-09-21T21:43:50,416 # Package would be ignored # 2026-09-21T21:43:50,416 ############################ 2026-09-21T21:43:50,416 Python recognizes 'skbio.io' as an importable package[^1], 2026-09-21T21:43:50,417 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,418 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,418 package, please make sure that 'skbio.io' is explicitly added 2026-09-21T21:43:50,418 to the `packages` configuration field. 2026-09-21T21:43:50,419 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,419 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,420 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,421 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,422 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,422 If you don't want 'skbio.io' to be distributed and are 2026-09-21T21:43:50,423 already explicitly excluding 'skbio.io' via 2026-09-21T21:43:50,424 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,424 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,425 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,426 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,427 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,428 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,429 even if it does not contain any `.py` files. 2026-09-21T21:43:50,430 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,430 directory, all directories are treated like packages. 2026-09-21T21:43:50,431 ******************************************************************************** 2026-09-21T21:43:50,432 !! 2026-09-21T21:43:50,432 check.warn(importable) 2026-09-21T21:43:50,432 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io.format' is absent from the `packages` configuration. 2026-09-21T21:43:50,433 !! 2026-09-21T21:43:50,434 ******************************************************************************** 2026-09-21T21:43:50,434 ############################ 2026-09-21T21:43:50,435 # Package would be ignored # 2026-09-21T21:43:50,435 ############################ 2026-09-21T21:43:50,436 Python recognizes 'skbio.io.format' as an importable package[^1], 2026-09-21T21:43:50,436 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,437 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,438 package, please make sure that 'skbio.io.format' is explicitly added 2026-09-21T21:43:50,438 to the `packages` configuration field. 2026-09-21T21:43:50,440 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,440 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,440 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,441 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,441 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,442 If you don't want 'skbio.io.format' to be distributed and are 2026-09-21T21:43:50,442 already explicitly excluding 'skbio.io.format' via 2026-09-21T21:43:50,443 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,443 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,443 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,444 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,445 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,446 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,446 even if it does not contain any `.py` files. 2026-09-21T21:43:50,446 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,447 directory, all directories are treated like packages. 2026-09-21T21:43:50,447 ******************************************************************************** 2026-09-21T21:43:50,448 !! 2026-09-21T21:43:50,449 check.warn(importable) 2026-09-21T21:43:50,449 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io.format.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,450 !! 2026-09-21T21:43:50,451 ******************************************************************************** 2026-09-21T21:43:50,451 ############################ 2026-09-21T21:43:50,452 # Package would be ignored # 2026-09-21T21:43:50,453 ############################ 2026-09-21T21:43:50,453 Python recognizes 'skbio.io.format.tests' as an importable package[^1], 2026-09-21T21:43:50,454 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,455 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,455 package, please make sure that 'skbio.io.format.tests' is explicitly added 2026-09-21T21:43:50,456 to the `packages` configuration field. 2026-09-21T21:43:50,457 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,457 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,458 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,458 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,459 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,460 If you don't want 'skbio.io.format.tests' to be distributed and are 2026-09-21T21:43:50,461 already explicitly excluding 'skbio.io.format.tests' via 2026-09-21T21:43:50,461 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,462 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,462 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,463 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,464 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,466 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,467 even if it does not contain any `.py` files. 2026-09-21T21:43:50,467 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,467 directory, all directories are treated like packages. 2026-09-21T21:43:50,468 ******************************************************************************** 2026-09-21T21:43:50,468 !! 2026-09-21T21:43:50,469 check.warn(importable) 2026-09-21T21:43:50,469 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io.format.tests.data' is absent from the `packages` configuration. 2026-09-21T21:43:50,469 !! 2026-09-21T21:43:50,470 ******************************************************************************** 2026-09-21T21:43:50,470 ############################ 2026-09-21T21:43:50,471 # Package would be ignored # 2026-09-21T21:43:50,471 ############################ 2026-09-21T21:43:50,471 Python recognizes 'skbio.io.format.tests.data' as an importable package[^1], 2026-09-21T21:43:50,472 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,473 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,473 package, please make sure that 'skbio.io.format.tests.data' is explicitly added 2026-09-21T21:43:50,473 to the `packages` configuration field. 2026-09-21T21:43:50,474 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,475 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,475 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,477 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,478 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,479 If you don't want 'skbio.io.format.tests.data' to be distributed and are 2026-09-21T21:43:50,479 already explicitly excluding 'skbio.io.format.tests.data' via 2026-09-21T21:43:50,480 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,480 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,481 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,482 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,483 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,485 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,485 even if it does not contain any `.py` files. 2026-09-21T21:43:50,486 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,486 directory, all directories are treated like packages. 2026-09-21T21:43:50,487 ******************************************************************************** 2026-09-21T21:43:50,488 !! 2026-09-21T21:43:50,488 check.warn(importable) 2026-09-21T21:43:50,488 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,489 !! 2026-09-21T21:43:50,490 ******************************************************************************** 2026-09-21T21:43:50,491 ############################ 2026-09-21T21:43:50,491 # Package would be ignored # 2026-09-21T21:43:50,492 ############################ 2026-09-21T21:43:50,492 Python recognizes 'skbio.io.tests' as an importable package[^1], 2026-09-21T21:43:50,493 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,494 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,494 package, please make sure that 'skbio.io.tests' is explicitly added 2026-09-21T21:43:50,494 to the `packages` configuration field. 2026-09-21T21:43:50,495 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,495 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,496 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,496 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,497 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,498 If you don't want 'skbio.io.tests' to be distributed and are 2026-09-21T21:43:50,498 already explicitly excluding 'skbio.io.tests' via 2026-09-21T21:43:50,499 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,499 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,500 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,501 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,502 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,503 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,503 even if it does not contain any `.py` files. 2026-09-21T21:43:50,504 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,505 directory, all directories are treated like packages. 2026-09-21T21:43:50,505 ******************************************************************************** 2026-09-21T21:43:50,506 !! 2026-09-21T21:43:50,507 check.warn(importable) 2026-09-21T21:43:50,507 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.io.tests.data' is absent from the `packages` configuration. 2026-09-21T21:43:50,508 !! 2026-09-21T21:43:50,509 ******************************************************************************** 2026-09-21T21:43:50,509 ############################ 2026-09-21T21:43:50,510 # Package would be ignored # 2026-09-21T21:43:50,511 ############################ 2026-09-21T21:43:50,511 Python recognizes 'skbio.io.tests.data' as an importable package[^1], 2026-09-21T21:43:50,512 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,513 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,513 package, please make sure that 'skbio.io.tests.data' is explicitly added 2026-09-21T21:43:50,513 to the `packages` configuration field. 2026-09-21T21:43:50,514 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,515 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,515 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,516 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,517 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,519 If you don't want 'skbio.io.tests.data' to be distributed and are 2026-09-21T21:43:50,519 already explicitly excluding 'skbio.io.tests.data' via 2026-09-21T21:43:50,520 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,520 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,521 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,522 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,523 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,524 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,524 even if it does not contain any `.py` files. 2026-09-21T21:43:50,524 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,525 directory, all directories are treated like packages. 2026-09-21T21:43:50,525 ******************************************************************************** 2026-09-21T21:43:50,526 !! 2026-09-21T21:43:50,526 check.warn(importable) 2026-09-21T21:43:50,526 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.metadata' is absent from the `packages` configuration. 2026-09-21T21:43:50,527 !! 2026-09-21T21:43:50,528 ******************************************************************************** 2026-09-21T21:43:50,528 ############################ 2026-09-21T21:43:50,528 # Package would be ignored # 2026-09-21T21:43:50,529 ############################ 2026-09-21T21:43:50,529 Python recognizes 'skbio.metadata' as an importable package[^1], 2026-09-21T21:43:50,530 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,530 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,531 package, please make sure that 'skbio.metadata' is explicitly added 2026-09-21T21:43:50,531 to the `packages` configuration field. 2026-09-21T21:43:50,532 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,533 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,534 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,535 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,536 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,537 If you don't want 'skbio.metadata' to be distributed and are 2026-09-21T21:43:50,537 already explicitly excluding 'skbio.metadata' via 2026-09-21T21:43:50,538 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,538 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,539 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,540 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,541 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,542 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,543 even if it does not contain any `.py` files. 2026-09-21T21:43:50,543 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,544 directory, all directories are treated like packages. 2026-09-21T21:43:50,544 ******************************************************************************** 2026-09-21T21:43:50,545 !! 2026-09-21T21:43:50,546 check.warn(importable) 2026-09-21T21:43:50,546 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.metadata.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,547 !! 2026-09-21T21:43:50,548 ******************************************************************************** 2026-09-21T21:43:50,549 ############################ 2026-09-21T21:43:50,550 # Package would be ignored # 2026-09-21T21:43:50,550 ############################ 2026-09-21T21:43:50,550 Python recognizes 'skbio.metadata.tests' as an importable package[^1], 2026-09-21T21:43:50,551 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,551 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,552 package, please make sure that 'skbio.metadata.tests' is explicitly added 2026-09-21T21:43:50,552 to the `packages` configuration field. 2026-09-21T21:43:50,553 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,553 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,553 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,554 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,555 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,555 If you don't want 'skbio.metadata.tests' to be distributed and are 2026-09-21T21:43:50,556 already explicitly excluding 'skbio.metadata.tests' via 2026-09-21T21:43:50,556 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,557 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,557 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,558 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,559 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,560 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,561 even if it does not contain any `.py` files. 2026-09-21T21:43:50,562 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,562 directory, all directories are treated like packages. 2026-09-21T21:43:50,563 ******************************************************************************** 2026-09-21T21:43:50,564 !! 2026-09-21T21:43:50,564 check.warn(importable) 2026-09-21T21:43:50,565 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.metadata.tests.data.invalid' is absent from the `packages` configuration. 2026-09-21T21:43:50,566 !! 2026-09-21T21:43:50,567 ******************************************************************************** 2026-09-21T21:43:50,567 ############################ 2026-09-21T21:43:50,568 # Package would be ignored # 2026-09-21T21:43:50,568 ############################ 2026-09-21T21:43:50,569 Python recognizes 'skbio.metadata.tests.data.invalid' as an importable package[^1], 2026-09-21T21:43:50,569 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,570 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,570 package, please make sure that 'skbio.metadata.tests.data.invalid' is explicitly added 2026-09-21T21:43:50,571 to the `packages` configuration field. 2026-09-21T21:43:50,572 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,572 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,573 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,574 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,575 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,577 If you don't want 'skbio.metadata.tests.data.invalid' to be distributed and are 2026-09-21T21:43:50,577 already explicitly excluding 'skbio.metadata.tests.data.invalid' via 2026-09-21T21:43:50,578 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,578 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,578 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,579 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,580 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,581 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,581 even if it does not contain any `.py` files. 2026-09-21T21:43:50,582 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,582 directory, all directories are treated like packages. 2026-09-21T21:43:50,582 ******************************************************************************** 2026-09-21T21:43:50,583 !! 2026-09-21T21:43:50,584 check.warn(importable) 2026-09-21T21:43:50,584 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.metadata.tests.data.valid' is absent from the `packages` configuration. 2026-09-21T21:43:50,584 !! 2026-09-21T21:43:50,585 ******************************************************************************** 2026-09-21T21:43:50,586 ############################ 2026-09-21T21:43:50,586 # Package would be ignored # 2026-09-21T21:43:50,586 ############################ 2026-09-21T21:43:50,587 Python recognizes 'skbio.metadata.tests.data.valid' as an importable package[^1], 2026-09-21T21:43:50,587 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,588 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,589 package, please make sure that 'skbio.metadata.tests.data.valid' is explicitly added 2026-09-21T21:43:50,589 to the `packages` configuration field. 2026-09-21T21:43:50,590 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,591 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,592 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,593 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,594 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,594 If you don't want 'skbio.metadata.tests.data.valid' to be distributed and are 2026-09-21T21:43:50,595 already explicitly excluding 'skbio.metadata.tests.data.valid' via 2026-09-21T21:43:50,595 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,596 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,596 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,597 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,598 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,600 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,600 even if it does not contain any `.py` files. 2026-09-21T21:43:50,601 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,602 directory, all directories are treated like packages. 2026-09-21T21:43:50,602 ******************************************************************************** 2026-09-21T21:43:50,603 !! 2026-09-21T21:43:50,604 check.warn(importable) 2026-09-21T21:43:50,604 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.sequence' is absent from the `packages` configuration. 2026-09-21T21:43:50,604 !! 2026-09-21T21:43:50,605 ******************************************************************************** 2026-09-21T21:43:50,605 ############################ 2026-09-21T21:43:50,606 # Package would be ignored # 2026-09-21T21:43:50,606 ############################ 2026-09-21T21:43:50,606 Python recognizes 'skbio.sequence' as an importable package[^1], 2026-09-21T21:43:50,607 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,608 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,608 package, please make sure that 'skbio.sequence' is explicitly added 2026-09-21T21:43:50,608 to the `packages` configuration field. 2026-09-21T21:43:50,609 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,609 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,610 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,610 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,611 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,612 If you don't want 'skbio.sequence' to be distributed and are 2026-09-21T21:43:50,613 already explicitly excluding 'skbio.sequence' via 2026-09-21T21:43:50,614 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,614 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,615 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,616 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,617 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,619 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,619 even if it does not contain any `.py` files. 2026-09-21T21:43:50,620 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,620 directory, all directories are treated like packages. 2026-09-21T21:43:50,621 ******************************************************************************** 2026-09-21T21:43:50,622 !! 2026-09-21T21:43:50,622 check.warn(importable) 2026-09-21T21:43:50,623 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.sequence.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,623 !! 2026-09-21T21:43:50,624 ******************************************************************************** 2026-09-21T21:43:50,625 ############################ 2026-09-21T21:43:50,625 # Package would be ignored # 2026-09-21T21:43:50,626 ############################ 2026-09-21T21:43:50,626 Python recognizes 'skbio.sequence.tests' as an importable package[^1], 2026-09-21T21:43:50,627 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,628 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,628 package, please make sure that 'skbio.sequence.tests' is explicitly added 2026-09-21T21:43:50,629 to the `packages` configuration field. 2026-09-21T21:43:50,630 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,631 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,631 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,632 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,632 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,633 If you don't want 'skbio.sequence.tests' to be distributed and are 2026-09-21T21:43:50,633 already explicitly excluding 'skbio.sequence.tests' via 2026-09-21T21:43:50,634 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,634 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,634 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,635 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,636 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,637 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,637 even if it does not contain any `.py` files. 2026-09-21T21:43:50,638 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,638 directory, all directories are treated like packages. 2026-09-21T21:43:50,638 ******************************************************************************** 2026-09-21T21:43:50,639 !! 2026-09-21T21:43:50,640 check.warn(importable) 2026-09-21T21:43:50,641 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats' is absent from the `packages` configuration. 2026-09-21T21:43:50,641 !! 2026-09-21T21:43:50,642 ******************************************************************************** 2026-09-21T21:43:50,643 ############################ 2026-09-21T21:43:50,643 # Package would be ignored # 2026-09-21T21:43:50,644 ############################ 2026-09-21T21:43:50,644 Python recognizes 'skbio.stats' as an importable package[^1], 2026-09-21T21:43:50,645 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,646 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,647 package, please make sure that 'skbio.stats' is explicitly added 2026-09-21T21:43:50,647 to the `packages` configuration field. 2026-09-21T21:43:50,648 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,649 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,649 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,650 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,651 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,653 If you don't want 'skbio.stats' to be distributed and are 2026-09-21T21:43:50,653 already explicitly excluding 'skbio.stats' via 2026-09-21T21:43:50,654 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,654 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,655 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,656 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,657 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,659 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,659 even if it does not contain any `.py` files. 2026-09-21T21:43:50,659 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,660 directory, all directories are treated like packages. 2026-09-21T21:43:50,660 ******************************************************************************** 2026-09-21T21:43:50,661 !! 2026-09-21T21:43:50,661 check.warn(importable) 2026-09-21T21:43:50,661 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.composition' is absent from the `packages` configuration. 2026-09-21T21:43:50,661 !! 2026-09-21T21:43:50,662 ******************************************************************************** 2026-09-21T21:43:50,662 ############################ 2026-09-21T21:43:50,663 # Package would be ignored # 2026-09-21T21:43:50,663 ############################ 2026-09-21T21:43:50,664 Python recognizes 'skbio.stats.composition' as an importable package[^1], 2026-09-21T21:43:50,664 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,665 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,665 package, please make sure that 'skbio.stats.composition' is explicitly added 2026-09-21T21:43:50,665 to the `packages` configuration field. 2026-09-21T21:43:50,666 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,667 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,667 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,668 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,670 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,671 If you don't want 'skbio.stats.composition' to be distributed and are 2026-09-21T21:43:50,671 already explicitly excluding 'skbio.stats.composition' via 2026-09-21T21:43:50,672 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,672 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,673 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,674 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,675 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,676 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,677 even if it does not contain any `.py` files. 2026-09-21T21:43:50,677 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,678 directory, all directories are treated like packages. 2026-09-21T21:43:50,678 ******************************************************************************** 2026-09-21T21:43:50,679 !! 2026-09-21T21:43:50,679 check.warn(importable) 2026-09-21T21:43:50,680 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.composition.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,680 !! 2026-09-21T21:43:50,681 ******************************************************************************** 2026-09-21T21:43:50,682 ############################ 2026-09-21T21:43:50,682 # Package would be ignored # 2026-09-21T21:43:50,683 ############################ 2026-09-21T21:43:50,684 Python recognizes 'skbio.stats.composition.tests' as an importable package[^1], 2026-09-21T21:43:50,684 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,685 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,686 package, please make sure that 'skbio.stats.composition.tests' is explicitly added 2026-09-21T21:43:50,686 to the `packages` configuration field. 2026-09-21T21:43:50,687 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,687 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,687 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,688 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,689 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,690 If you don't want 'skbio.stats.composition.tests' to be distributed and are 2026-09-21T21:43:50,690 already explicitly excluding 'skbio.stats.composition.tests' via 2026-09-21T21:43:50,690 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,691 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,691 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,692 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,693 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,694 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,694 even if it does not contain any `.py` files. 2026-09-21T21:43:50,695 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,695 directory, all directories are treated like packages. 2026-09-21T21:43:50,696 ******************************************************************************** 2026-09-21T21:43:50,697 !! 2026-09-21T21:43:50,698 check.warn(importable) 2026-09-21T21:43:50,698 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.composition.tests.data' is absent from the `packages` configuration. 2026-09-21T21:43:50,699 !! 2026-09-21T21:43:50,700 ******************************************************************************** 2026-09-21T21:43:50,701 ############################ 2026-09-21T21:43:50,701 # Package would be ignored # 2026-09-21T21:43:50,702 ############################ 2026-09-21T21:43:50,702 Python recognizes 'skbio.stats.composition.tests.data' as an importable package[^1], 2026-09-21T21:43:50,703 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,704 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,704 package, please make sure that 'skbio.stats.composition.tests.data' is explicitly added 2026-09-21T21:43:50,704 to the `packages` configuration field. 2026-09-21T21:43:50,705 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,706 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,706 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,707 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,708 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,710 If you don't want 'skbio.stats.composition.tests.data' to be distributed and are 2026-09-21T21:43:50,710 already explicitly excluding 'skbio.stats.composition.tests.data' via 2026-09-21T21:43:50,711 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,711 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,712 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,712 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,713 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,714 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,715 even if it does not contain any `.py` files. 2026-09-21T21:43:50,715 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,715 directory, all directories are treated like packages. 2026-09-21T21:43:50,716 ******************************************************************************** 2026-09-21T21:43:50,716 !! 2026-09-21T21:43:50,717 check.warn(importable) 2026-09-21T21:43:50,717 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.distance' is absent from the `packages` configuration. 2026-09-21T21:43:50,717 !! 2026-09-21T21:43:50,718 ******************************************************************************** 2026-09-21T21:43:50,718 ############################ 2026-09-21T21:43:50,719 # Package would be ignored # 2026-09-21T21:43:50,719 ############################ 2026-09-21T21:43:50,720 Python recognizes 'skbio.stats.distance' as an importable package[^1], 2026-09-21T21:43:50,720 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,721 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,722 package, please make sure that 'skbio.stats.distance' is explicitly added 2026-09-21T21:43:50,722 to the `packages` configuration field. 2026-09-21T21:43:50,724 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,724 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,725 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,726 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,727 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,729 If you don't want 'skbio.stats.distance' to be distributed and are 2026-09-21T21:43:50,729 already explicitly excluding 'skbio.stats.distance' via 2026-09-21T21:43:50,730 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,730 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,731 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,732 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,733 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,734 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,735 even if it does not contain any `.py` files. 2026-09-21T21:43:50,735 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,736 directory, all directories are treated like packages. 2026-09-21T21:43:50,736 ******************************************************************************** 2026-09-21T21:43:50,738 !! 2026-09-21T21:43:50,738 check.warn(importable) 2026-09-21T21:43:50,739 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.distance.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,739 !! 2026-09-21T21:43:50,741 ******************************************************************************** 2026-09-21T21:43:50,741 ############################ 2026-09-21T21:43:50,741 # Package would be ignored # 2026-09-21T21:43:50,742 ############################ 2026-09-21T21:43:50,742 Python recognizes 'skbio.stats.distance.tests' as an importable package[^1], 2026-09-21T21:43:50,743 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,743 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,744 package, please make sure that 'skbio.stats.distance.tests' is explicitly added 2026-09-21T21:43:50,744 to the `packages` configuration field. 2026-09-21T21:43:50,745 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,745 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,746 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,746 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,747 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,748 If you don't want 'skbio.stats.distance.tests' to be distributed and are 2026-09-21T21:43:50,748 already explicitly excluding 'skbio.stats.distance.tests' via 2026-09-21T21:43:50,749 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,749 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,750 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,751 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,752 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,754 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,755 even if it does not contain any `.py` files. 2026-09-21T21:43:50,755 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,756 directory, all directories are treated like packages. 2026-09-21T21:43:50,757 ******************************************************************************** 2026-09-21T21:43:50,758 !! 2026-09-21T21:43:50,758 check.warn(importable) 2026-09-21T21:43:50,759 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.distance.tests.data' is absent from the `packages` configuration. 2026-09-21T21:43:50,760 !! 2026-09-21T21:43:50,761 ******************************************************************************** 2026-09-21T21:43:50,761 ############################ 2026-09-21T21:43:50,761 # Package would be ignored # 2026-09-21T21:43:50,762 ############################ 2026-09-21T21:43:50,762 Python recognizes 'skbio.stats.distance.tests.data' as an importable package[^1], 2026-09-21T21:43:50,763 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,764 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,764 package, please make sure that 'skbio.stats.distance.tests.data' is explicitly added 2026-09-21T21:43:50,765 to the `packages` configuration field. 2026-09-21T21:43:50,766 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,767 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,767 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,769 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,770 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,770 If you don't want 'skbio.stats.distance.tests.data' to be distributed and are 2026-09-21T21:43:50,771 already explicitly excluding 'skbio.stats.distance.tests.data' via 2026-09-21T21:43:50,771 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,771 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,772 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,773 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,774 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,775 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,776 even if it does not contain any `.py` files. 2026-09-21T21:43:50,776 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,777 directory, all directories are treated like packages. 2026-09-21T21:43:50,777 ******************************************************************************** 2026-09-21T21:43:50,778 !! 2026-09-21T21:43:50,779 check.warn(importable) 2026-09-21T21:43:50,779 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.evolve' is absent from the `packages` configuration. 2026-09-21T21:43:50,780 !! 2026-09-21T21:43:50,781 ******************************************************************************** 2026-09-21T21:43:50,782 ############################ 2026-09-21T21:43:50,783 # Package would be ignored # 2026-09-21T21:43:50,783 ############################ 2026-09-21T21:43:50,784 Python recognizes 'skbio.stats.evolve' as an importable package[^1], 2026-09-21T21:43:50,790 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,840 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,841 package, please make sure that 'skbio.stats.evolve' is explicitly added 2026-09-21T21:43:50,842 to the `packages` configuration field. 2026-09-21T21:43:50,843 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,843 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,844 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,845 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,846 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,847 If you don't want 'skbio.stats.evolve' to be distributed and are 2026-09-21T21:43:50,847 already explicitly excluding 'skbio.stats.evolve' via 2026-09-21T21:43:50,848 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,848 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,849 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,850 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,851 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,853 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,853 even if it does not contain any `.py` files. 2026-09-21T21:43:50,854 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,855 directory, all directories are treated like packages. 2026-09-21T21:43:50,855 ******************************************************************************** 2026-09-21T21:43:50,856 !! 2026-09-21T21:43:50,856 check.warn(importable) 2026-09-21T21:43:50,857 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.evolve.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,857 !! 2026-09-21T21:43:50,858 ******************************************************************************** 2026-09-21T21:43:50,859 ############################ 2026-09-21T21:43:50,859 # Package would be ignored # 2026-09-21T21:43:50,860 ############################ 2026-09-21T21:43:50,861 Python recognizes 'skbio.stats.evolve.tests' as an importable package[^1], 2026-09-21T21:43:50,861 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,862 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,862 package, please make sure that 'skbio.stats.evolve.tests' is explicitly added 2026-09-21T21:43:50,863 to the `packages` configuration field. 2026-09-21T21:43:50,864 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,865 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,865 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,866 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,867 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,868 If you don't want 'skbio.stats.evolve.tests' to be distributed and are 2026-09-21T21:43:50,869 already explicitly excluding 'skbio.stats.evolve.tests' via 2026-09-21T21:43:50,869 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,870 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,870 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,871 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,872 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,874 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,875 even if it does not contain any `.py` files. 2026-09-21T21:43:50,875 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,876 directory, all directories are treated like packages. 2026-09-21T21:43:50,876 ******************************************************************************** 2026-09-21T21:43:50,877 !! 2026-09-21T21:43:50,878 check.warn(importable) 2026-09-21T21:43:50,878 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.ordination' is absent from the `packages` configuration. 2026-09-21T21:43:50,879 !! 2026-09-21T21:43:50,880 ******************************************************************************** 2026-09-21T21:43:50,880 ############################ 2026-09-21T21:43:50,881 # Package would be ignored # 2026-09-21T21:43:50,881 ############################ 2026-09-21T21:43:50,882 Python recognizes 'skbio.stats.ordination' as an importable package[^1], 2026-09-21T21:43:50,882 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,883 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,884 package, please make sure that 'skbio.stats.ordination' is explicitly added 2026-09-21T21:43:50,885 to the `packages` configuration field. 2026-09-21T21:43:50,886 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,886 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,887 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,888 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,888 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,889 If you don't want 'skbio.stats.ordination' to be distributed and are 2026-09-21T21:43:50,890 already explicitly excluding 'skbio.stats.ordination' via 2026-09-21T21:43:50,891 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,891 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,892 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,892 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,893 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,895 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,895 even if it does not contain any `.py` files. 2026-09-21T21:43:50,896 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,896 directory, all directories are treated like packages. 2026-09-21T21:43:50,897 ******************************************************************************** 2026-09-21T21:43:50,898 !! 2026-09-21T21:43:50,898 check.warn(importable) 2026-09-21T21:43:50,899 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.ordination.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,899 !! 2026-09-21T21:43:50,900 ******************************************************************************** 2026-09-21T21:43:50,901 ############################ 2026-09-21T21:43:50,901 # Package would be ignored # 2026-09-21T21:43:50,902 ############################ 2026-09-21T21:43:50,902 Python recognizes 'skbio.stats.ordination.tests' as an importable package[^1], 2026-09-21T21:43:50,902 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,904 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,905 package, please make sure that 'skbio.stats.ordination.tests' is explicitly added 2026-09-21T21:43:50,906 to the `packages` configuration field. 2026-09-21T21:43:50,906 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,907 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,907 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,909 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,910 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,911 If you don't want 'skbio.stats.ordination.tests' to be distributed and are 2026-09-21T21:43:50,911 already explicitly excluding 'skbio.stats.ordination.tests' via 2026-09-21T21:43:50,912 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,912 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,913 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,914 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,915 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,916 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,917 even if it does not contain any `.py` files. 2026-09-21T21:43:50,917 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,917 directory, all directories are treated like packages. 2026-09-21T21:43:50,918 ******************************************************************************** 2026-09-21T21:43:50,919 !! 2026-09-21T21:43:50,919 check.warn(importable) 2026-09-21T21:43:50,920 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.ordination.tests.data' is absent from the `packages` configuration. 2026-09-21T21:43:50,920 !! 2026-09-21T21:43:50,921 ******************************************************************************** 2026-09-21T21:43:50,921 ############################ 2026-09-21T21:43:50,922 # Package would be ignored # 2026-09-21T21:43:50,922 ############################ 2026-09-21T21:43:50,923 Python recognizes 'skbio.stats.ordination.tests.data' as an importable package[^1], 2026-09-21T21:43:50,923 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,924 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,924 package, please make sure that 'skbio.stats.ordination.tests.data' is explicitly added 2026-09-21T21:43:50,925 to the `packages` configuration field. 2026-09-21T21:43:50,926 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,926 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,927 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,928 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,929 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,930 If you don't want 'skbio.stats.ordination.tests.data' to be distributed and are 2026-09-21T21:43:50,930 already explicitly excluding 'skbio.stats.ordination.tests.data' via 2026-09-21T21:43:50,931 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,931 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,932 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,933 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,934 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,935 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,936 even if it does not contain any `.py` files. 2026-09-21T21:43:50,936 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,937 directory, all directories are treated like packages. 2026-09-21T21:43:50,937 ******************************************************************************** 2026-09-21T21:43:50,938 !! 2026-09-21T21:43:50,939 check.warn(importable) 2026-09-21T21:43:50,939 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.ordination.tests.data.cf' is absent from the `packages` configuration. 2026-09-21T21:43:50,940 !! 2026-09-21T21:43:50,941 ******************************************************************************** 2026-09-21T21:43:50,941 ############################ 2026-09-21T21:43:50,942 # Package would be ignored # 2026-09-21T21:43:50,942 ############################ 2026-09-21T21:43:50,943 Python recognizes 'skbio.stats.ordination.tests.data.cf' as an importable package[^1], 2026-09-21T21:43:50,943 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,944 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,944 package, please make sure that 'skbio.stats.ordination.tests.data.cf' is explicitly added 2026-09-21T21:43:50,945 to the `packages` configuration field. 2026-09-21T21:43:50,945 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,946 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,946 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,947 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,948 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,949 If you don't want 'skbio.stats.ordination.tests.data.cf' to be distributed and are 2026-09-21T21:43:50,949 already explicitly excluding 'skbio.stats.ordination.tests.data.cf' via 2026-09-21T21:43:50,950 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,950 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,951 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,951 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,952 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,954 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,954 even if it does not contain any `.py` files. 2026-09-21T21:43:50,955 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,955 directory, all directories are treated like packages. 2026-09-21T21:43:50,956 ******************************************************************************** 2026-09-21T21:43:50,957 !! 2026-09-21T21:43:50,957 check.warn(importable) 2026-09-21T21:43:50,958 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.ordination.tests.data.soils' is absent from the `packages` configuration. 2026-09-21T21:43:50,960 !! 2026-09-21T21:43:50,965 ******************************************************************************** 2026-09-21T21:43:50,966 ############################ 2026-09-21T21:43:50,967 # Package would be ignored # 2026-09-21T21:43:50,967 ############################ 2026-09-21T21:43:50,968 Python recognizes 'skbio.stats.ordination.tests.data.soils' as an importable package[^1], 2026-09-21T21:43:50,968 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,970 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,970 package, please make sure that 'skbio.stats.ordination.tests.data.soils' is explicitly added 2026-09-21T21:43:50,971 to the `packages` configuration field. 2026-09-21T21:43:50,972 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,973 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,974 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,975 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,976 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,977 If you don't want 'skbio.stats.ordination.tests.data.soils' to be distributed and are 2026-09-21T21:43:50,977 already explicitly excluding 'skbio.stats.ordination.tests.data.soils' via 2026-09-21T21:43:50,978 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,978 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,978 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:50,979 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:50,980 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:50,981 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:50,982 even if it does not contain any `.py` files. 2026-09-21T21:43:50,982 On the other hand, currently there is no concept of package data 2026-09-21T21:43:50,983 directory, all directories are treated like packages. 2026-09-21T21:43:50,983 ******************************************************************************** 2026-09-21T21:43:50,984 !! 2026-09-21T21:43:50,985 check.warn(importable) 2026-09-21T21:43:50,985 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.tests' is absent from the `packages` configuration. 2026-09-21T21:43:50,986 !! 2026-09-21T21:43:50,987 ******************************************************************************** 2026-09-21T21:43:50,987 ############################ 2026-09-21T21:43:50,988 # Package would be ignored # 2026-09-21T21:43:50,988 ############################ 2026-09-21T21:43:50,989 Python recognizes 'skbio.stats.tests' as an importable package[^1], 2026-09-21T21:43:50,989 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:50,990 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:50,991 package, please make sure that 'skbio.stats.tests' is explicitly added 2026-09-21T21:43:50,991 to the `packages` configuration field. 2026-09-21T21:43:50,993 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:50,993 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:50,993 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:50,995 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:50,996 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:50,997 If you don't want 'skbio.stats.tests' to be distributed and are 2026-09-21T21:43:50,997 already explicitly excluding 'skbio.stats.tests' via 2026-09-21T21:43:50,998 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:50,998 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:50,999 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:51,000 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:51,001 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:51,002 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:51,002 even if it does not contain any `.py` files. 2026-09-21T21:43:51,003 On the other hand, currently there is no concept of package data 2026-09-21T21:43:51,004 directory, all directories are treated like packages. 2026-09-21T21:43:51,004 ******************************************************************************** 2026-09-21T21:43:51,006 !! 2026-09-21T21:43:51,006 check.warn(importable) 2026-09-21T21:43:51,006 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.stats.tests.data' is absent from the `packages` configuration. 2026-09-21T21:43:51,007 !! 2026-09-21T21:43:51,008 ******************************************************************************** 2026-09-21T21:43:51,008 ############################ 2026-09-21T21:43:51,008 # Package would be ignored # 2026-09-21T21:43:51,009 ############################ 2026-09-21T21:43:51,009 Python recognizes 'skbio.stats.tests.data' as an importable package[^1], 2026-09-21T21:43:51,010 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:51,011 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:51,011 package, please make sure that 'skbio.stats.tests.data' is explicitly added 2026-09-21T21:43:51,011 to the `packages` configuration field. 2026-09-21T21:43:51,013 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:51,013 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:51,013 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:51,014 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:51,015 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:51,016 If you don't want 'skbio.stats.tests.data' to be distributed and are 2026-09-21T21:43:51,017 already explicitly excluding 'skbio.stats.tests.data' via 2026-09-21T21:43:51,017 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:51,018 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:51,018 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:51,019 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:51,020 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:51,021 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:51,022 even if it does not contain any `.py` files. 2026-09-21T21:43:51,022 On the other hand, currently there is no concept of package data 2026-09-21T21:43:51,023 directory, all directories are treated like packages. 2026-09-21T21:43:51,023 ******************************************************************************** 2026-09-21T21:43:51,025 !! 2026-09-21T21:43:51,025 check.warn(importable) 2026-09-21T21:43:51,026 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.table' is absent from the `packages` configuration. 2026-09-21T21:43:51,026 !! 2026-09-21T21:43:51,027 ******************************************************************************** 2026-09-21T21:43:51,028 ############################ 2026-09-21T21:43:51,028 # Package would be ignored # 2026-09-21T21:43:51,029 ############################ 2026-09-21T21:43:51,029 Python recognizes 'skbio.table' as an importable package[^1], 2026-09-21T21:43:51,030 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:51,031 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:51,031 package, please make sure that 'skbio.table' is explicitly added 2026-09-21T21:43:51,032 to the `packages` configuration field. 2026-09-21T21:43:51,033 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:51,033 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:51,034 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:51,034 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:51,036 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:51,036 If you don't want 'skbio.table' to be distributed and are 2026-09-21T21:43:51,037 already explicitly excluding 'skbio.table' via 2026-09-21T21:43:51,037 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:51,038 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:51,038 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:51,039 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:51,040 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:51,042 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:51,043 even if it does not contain any `.py` files. 2026-09-21T21:43:51,044 On the other hand, currently there is no concept of package data 2026-09-21T21:43:51,044 directory, all directories are treated like packages. 2026-09-21T21:43:51,045 ******************************************************************************** 2026-09-21T21:43:51,046 !! 2026-09-21T21:43:51,046 check.warn(importable) 2026-09-21T21:43:51,047 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.table.tests' is absent from the `packages` configuration. 2026-09-21T21:43:51,047 !! 2026-09-21T21:43:51,048 ******************************************************************************** 2026-09-21T21:43:51,049 ############################ 2026-09-21T21:43:51,049 # Package would be ignored # 2026-09-21T21:43:51,050 ############################ 2026-09-21T21:43:51,050 Python recognizes 'skbio.table.tests' as an importable package[^1], 2026-09-21T21:43:51,051 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:51,052 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:51,052 package, please make sure that 'skbio.table.tests' is explicitly added 2026-09-21T21:43:51,053 to the `packages` configuration field. 2026-09-21T21:43:51,054 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:51,054 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:51,055 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:51,056 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:51,057 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:51,058 If you don't want 'skbio.table.tests' to be distributed and are 2026-09-21T21:43:51,059 already explicitly excluding 'skbio.table.tests' via 2026-09-21T21:43:51,059 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:51,060 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:51,061 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:51,062 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:51,064 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:51,066 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:51,066 even if it does not contain any `.py` files. 2026-09-21T21:43:51,067 On the other hand, currently there is no concept of package data 2026-09-21T21:43:51,067 directory, all directories are treated like packages. 2026-09-21T21:43:51,068 ******************************************************************************** 2026-09-21T21:43:51,069 !! 2026-09-21T21:43:51,069 check.warn(importable) 2026-09-21T21:43:51,070 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.tests' is absent from the `packages` configuration. 2026-09-21T21:43:51,070 !! 2026-09-21T21:43:51,071 ******************************************************************************** 2026-09-21T21:43:51,072 ############################ 2026-09-21T21:43:51,073 # Package would be ignored # 2026-09-21T21:43:51,073 ############################ 2026-09-21T21:43:51,074 Python recognizes 'skbio.tests' as an importable package[^1], 2026-09-21T21:43:51,075 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:51,076 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:51,076 package, please make sure that 'skbio.tests' is explicitly added 2026-09-21T21:43:51,077 to the `packages` configuration field. 2026-09-21T21:43:51,079 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:51,079 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:51,080 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:51,082 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:51,083 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:51,085 If you don't want 'skbio.tests' to be distributed and are 2026-09-21T21:43:51,085 already explicitly excluding 'skbio.tests' via 2026-09-21T21:43:51,086 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:51,087 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:51,088 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:51,089 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:51,091 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:51,093 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:51,094 even if it does not contain any `.py` files. 2026-09-21T21:43:51,094 On the other hand, currently there is no concept of package data 2026-09-21T21:43:51,095 directory, all directories are treated like packages. 2026-09-21T21:43:51,096 ******************************************************************************** 2026-09-21T21:43:51,097 !! 2026-09-21T21:43:51,098 check.warn(importable) 2026-09-21T21:43:51,099 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.tree' is absent from the `packages` configuration. 2026-09-21T21:43:51,100 !! 2026-09-21T21:43:51,101 ******************************************************************************** 2026-09-21T21:43:51,102 ############################ 2026-09-21T21:43:51,104 # Package would be ignored # 2026-09-21T21:43:51,105 ############################ 2026-09-21T21:43:51,105 Python recognizes 'skbio.tree' as an importable package[^1], 2026-09-21T21:43:51,106 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:51,109 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:51,110 package, please make sure that 'skbio.tree' is explicitly added 2026-09-21T21:43:51,110 to the `packages` configuration field. 2026-09-21T21:43:51,112 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:51,115 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:51,116 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:51,118 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:51,119 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:51,120 If you don't want 'skbio.tree' to be distributed and are 2026-09-21T21:43:51,120 already explicitly excluding 'skbio.tree' via 2026-09-21T21:43:51,121 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:51,121 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:51,121 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:51,122 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:51,123 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:51,125 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:51,125 even if it does not contain any `.py` files. 2026-09-21T21:43:51,126 On the other hand, currently there is no concept of package data 2026-09-21T21:43:51,126 directory, all directories are treated like packages. 2026-09-21T21:43:51,127 ******************************************************************************** 2026-09-21T21:43:51,128 !! 2026-09-21T21:43:51,128 check.warn(importable) 2026-09-21T21:43:51,129 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.tree.tests' is absent from the `packages` configuration. 2026-09-21T21:43:51,129 !! 2026-09-21T21:43:51,130 ******************************************************************************** 2026-09-21T21:43:51,131 ############################ 2026-09-21T21:43:51,131 # Package would be ignored # 2026-09-21T21:43:51,132 ############################ 2026-09-21T21:43:51,132 Python recognizes 'skbio.tree.tests' as an importable package[^1], 2026-09-21T21:43:51,133 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:51,134 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:51,134 package, please make sure that 'skbio.tree.tests' is explicitly added 2026-09-21T21:43:51,135 to the `packages` configuration field. 2026-09-21T21:43:51,136 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:51,137 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:51,137 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:51,138 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:51,139 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:51,141 If you don't want 'skbio.tree.tests' to be distributed and are 2026-09-21T21:43:51,141 already explicitly excluding 'skbio.tree.tests' via 2026-09-21T21:43:51,142 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:51,142 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:51,143 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:51,144 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:51,145 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:51,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:51,147 even if it does not contain any `.py` files. 2026-09-21T21:43:51,148 On the other hand, currently there is no concept of package data 2026-09-21T21:43:51,148 directory, all directories are treated like packages. 2026-09-21T21:43:51,149 ******************************************************************************** 2026-09-21T21:43:51,150 !! 2026-09-21T21:43:51,150 check.warn(importable) 2026-09-21T21:43:51,151 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.tree.tests.data' is absent from the `packages` configuration. 2026-09-21T21:43:51,151 !! 2026-09-21T21:43:51,153 ******************************************************************************** 2026-09-21T21:43:51,153 ############################ 2026-09-21T21:43:51,154 # Package would be ignored # 2026-09-21T21:43:51,154 ############################ 2026-09-21T21:43:51,155 Python recognizes 'skbio.tree.tests.data' as an importable package[^1], 2026-09-21T21:43:51,155 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:51,157 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:51,157 package, please make sure that 'skbio.tree.tests.data' is explicitly added 2026-09-21T21:43:51,158 to the `packages` configuration field. 2026-09-21T21:43:51,159 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:51,160 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:51,161 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:51,162 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:51,163 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:51,164 If you don't want 'skbio.tree.tests.data' to be distributed and are 2026-09-21T21:43:51,165 already explicitly excluding 'skbio.tree.tests.data' via 2026-09-21T21:43:51,166 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:51,167 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:51,167 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:51,168 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:51,170 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:51,172 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:51,172 even if it does not contain any `.py` files. 2026-09-21T21:43:51,173 On the other hand, currently there is no concept of package data 2026-09-21T21:43:51,174 directory, all directories are treated like packages. 2026-09-21T21:43:51,174 ******************************************************************************** 2026-09-21T21:43:51,176 !! 2026-09-21T21:43:51,176 check.warn(importable) 2026-09-21T21:43:51,177 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.util' is absent from the `packages` configuration. 2026-09-21T21:43:51,178 !! 2026-09-21T21:43:51,179 ******************************************************************************** 2026-09-21T21:43:51,180 ############################ 2026-09-21T21:43:51,181 # Package would be ignored # 2026-09-21T21:43:51,181 ############################ 2026-09-21T21:43:51,182 Python recognizes 'skbio.util' as an importable package[^1], 2026-09-21T21:43:51,183 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:51,184 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:51,184 package, please make sure that 'skbio.util' is explicitly added 2026-09-21T21:43:51,185 to the `packages` configuration field. 2026-09-21T21:43:51,186 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:51,187 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:51,188 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:51,189 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:51,191 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:51,192 If you don't want 'skbio.util' to be distributed and are 2026-09-21T21:43:51,193 already explicitly excluding 'skbio.util' via 2026-09-21T21:43:51,193 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:51,194 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:51,195 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:51,197 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:51,199 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:51,201 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:51,202 even if it does not contain any `.py` files. 2026-09-21T21:43:51,202 On the other hand, currently there is no concept of package data 2026-09-21T21:43:51,203 directory, all directories are treated like packages. 2026-09-21T21:43:51,204 ******************************************************************************** 2026-09-21T21:43:51,205 !! 2026-09-21T21:43:51,206 check.warn(importable) 2026-09-21T21:43:51,207 /tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'skbio.util.tests' is absent from the `packages` configuration. 2026-09-21T21:43:51,207 !! 2026-09-21T21:43:51,209 ******************************************************************************** 2026-09-21T21:43:51,210 ############################ 2026-09-21T21:43:51,210 # Package would be ignored # 2026-09-21T21:43:51,211 ############################ 2026-09-21T21:43:51,212 Python recognizes 'skbio.util.tests' as an importable package[^1], 2026-09-21T21:43:51,213 but it is absent from setuptools' `packages` configuration. 2026-09-21T21:43:51,215 This leads to an ambiguous overall configuration. If you want to distribute this 2026-09-21T21:43:51,215 package, please make sure that 'skbio.util.tests' is explicitly added 2026-09-21T21:43:51,216 to the `packages` configuration field. 2026-09-21T21:43:51,218 Alternatively, you can also rely on setuptools' discovery methods 2026-09-21T21:43:51,219 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-09-21T21:43:51,220 instead of `find_packages(...)`/`find:`). 2026-09-21T21:43:51,222 You can read more about "package discovery" on setuptools documentation page: 2026-09-21T21:43:51,224 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-09-21T21:43:51,225 If you don't want 'skbio.util.tests' to be distributed and are 2026-09-21T21:43:51,226 already explicitly excluding 'skbio.util.tests' via 2026-09-21T21:43:51,227 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-09-21T21:43:51,228 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-09-21T21:43:51,228 combination with a more fine grained `package-data` configuration. 2026-09-21T21:43:51,229 You can read more about "package data files" on setuptools documentation page: 2026-09-21T21:43:51,231 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-09-21T21:43:51,233 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-09-21T21:43:51,234 even if it does not contain any `.py` files. 2026-09-21T21:43:51,234 On the other hand, currently there is no concept of package data 2026-09-21T21:43:51,235 directory, all directories are treated like packages. 2026-09-21T21:43:51,235 ******************************************************************************** 2026-09-21T21:43:51,237 !! 2026-09-21T21:43:51,237 check.warn(importable) 2026-09-21T21:43:51,238 creating build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,239 copying skbio/alignment/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,239 copying skbio/alignment/_cutils.c -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,240 copying skbio/alignment/_cutils.pyx -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,240 copying skbio/alignment/_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,241 copying skbio/alignment/_indexing.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,242 copying skbio/alignment/_multi.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,243 copying skbio/alignment/_pair.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,243 copying skbio/alignment/_pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,244 copying skbio/alignment/_path.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,245 copying skbio/alignment/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,245 copying skbio/alignment/_score.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,246 copying skbio/alignment/_tabular_msa.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,247 copying skbio/alignment/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment 2026-09-21T21:43:51,247 creating build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2026-09-21T21:43:51,248 copying skbio/alignment/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2026-09-21T21:43:51,248 copying skbio/alignment/tests/test_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2026-09-21T21:43:51,249 copying skbio/alignment/tests/test_multi.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2026-09-21T21:43:51,249 copying skbio/alignment/tests/test_pair.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2026-09-21T21:43:51,250 copying skbio/alignment/tests/test_pairwise.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2026-09-21T21:43:51,251 copying skbio/alignment/tests/test_path.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2026-09-21T21:43:51,251 copying skbio/alignment/tests/test_score.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2026-09-21T21:43:51,252 copying skbio/alignment/tests/test_tabular_msa.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2026-09-21T21:43:51,252 copying skbio/alignment/tests/test_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests 2026-09-21T21:43:51,253 creating build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2026-09-21T21:43:51,253 copying skbio/alignment/tests/data/16s.frn -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2026-09-21T21:43:51,254 copying skbio/alignment/tests/data/il6.nucl.aln -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2026-09-21T21:43:51,254 copying skbio/alignment/tests/data/il6.prot.aln -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2026-09-21T21:43:51,255 copying skbio/alignment/tests/data/insulin.faa -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2026-09-21T21:43:51,255 copying skbio/alignment/tests/data/tp53.nucl.aln -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2026-09-21T21:43:51,256 copying skbio/alignment/tests/data/tp53.prot.aln -> build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data 2026-09-21T21:43:51,256 creating build/lib.linux-armv7l-cpython-311/skbio/binaries 2026-09-21T21:43:51,257 copying skbio/binaries/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries 2026-09-21T21:43:51,258 copying skbio/binaries/_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries 2026-09-21T21:43:51,258 copying skbio/binaries/_ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries 2026-09-21T21:43:51,259 copying skbio/binaries/_util.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries 2026-09-21T21:43:51,260 creating build/lib.linux-armv7l-cpython-311/skbio/binaries/tests 2026-09-21T21:43:51,260 copying skbio/binaries/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries/tests 2026-09-21T21:43:51,261 copying skbio/binaries/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/binaries/tests 2026-09-21T21:43:51,261 creating build/lib.linux-armv7l-cpython-311/skbio/diversity 2026-09-21T21:43:51,262 copying skbio/diversity/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2026-09-21T21:43:51,263 copying skbio/diversity/_block.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2026-09-21T21:43:51,263 copying skbio/diversity/_driver.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2026-09-21T21:43:51,264 copying skbio/diversity/_phylogenetic.c -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2026-09-21T21:43:51,265 copying skbio/diversity/_phylogenetic.pyx -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2026-09-21T21:43:51,266 copying skbio/diversity/_util.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity 2026-09-21T21:43:51,266 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2026-09-21T21:43:51,267 copying skbio/diversity/alpha/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2026-09-21T21:43:51,268 copying skbio/diversity/alpha/_ace.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2026-09-21T21:43:51,269 copying skbio/diversity/alpha/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2026-09-21T21:43:51,270 copying skbio/diversity/alpha/_chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2026-09-21T21:43:51,270 copying skbio/diversity/alpha/_gini.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2026-09-21T21:43:51,271 copying skbio/diversity/alpha/_lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2026-09-21T21:43:51,272 copying skbio/diversity/alpha/_pd.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha 2026-09-21T21:43:51,273 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2026-09-21T21:43:51,274 copying skbio/diversity/alpha/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2026-09-21T21:43:51,275 copying skbio/diversity/alpha/tests/test_ace.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2026-09-21T21:43:51,275 copying skbio/diversity/alpha/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2026-09-21T21:43:51,276 copying skbio/diversity/alpha/tests/test_chao1.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2026-09-21T21:43:51,277 copying skbio/diversity/alpha/tests/test_gini.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2026-09-21T21:43:51,278 copying skbio/diversity/alpha/tests/test_lladser.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2026-09-21T21:43:51,278 copying skbio/diversity/alpha/tests/test_pd.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests 2026-09-21T21:43:51,279 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2026-09-21T21:43:51,280 copying skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2026-09-21T21:43:51,280 copying skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2026-09-21T21:43:51,281 copying skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2026-09-21T21:43:51,282 copying skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt 2026-09-21T21:43:51,282 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2026-09-21T21:43:51,283 copying skbio/diversity/beta/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2026-09-21T21:43:51,284 copying skbio/diversity/beta/_unifrac.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta 2026-09-21T21:43:51,285 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2026-09-21T21:43:51,285 copying skbio/diversity/beta/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2026-09-21T21:43:51,286 copying skbio/diversity/beta/tests/test_unifrac.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests 2026-09-21T21:43:51,287 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:43:51,288 copying skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:43:51,288 copying skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:43:51,289 copying skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:43:51,290 copying skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:43:51,290 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:43:51,291 copying skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:43:51,291 creating build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2026-09-21T21:43:51,292 copying skbio/diversity/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2026-09-21T21:43:51,293 copying skbio/diversity/tests/test_block.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2026-09-21T21:43:51,293 copying skbio/diversity/tests/test_driver.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2026-09-21T21:43:51,294 copying skbio/diversity/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/diversity/tests 2026-09-21T21:43:51,294 creating build/lib.linux-armv7l-cpython-311/skbio/embedding 2026-09-21T21:43:51,295 copying skbio/embedding/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding 2026-09-21T21:43:51,295 copying skbio/embedding/_embedding.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding 2026-09-21T21:43:51,296 copying skbio/embedding/_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding 2026-09-21T21:43:51,297 creating build/lib.linux-armv7l-cpython-311/skbio/embedding/tests 2026-09-21T21:43:51,297 copying skbio/embedding/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests 2026-09-21T21:43:51,298 copying skbio/embedding/tests/test_embedding.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests 2026-09-21T21:43:51,298 copying skbio/embedding/tests/test_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests 2026-09-21T21:43:51,299 creating build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/data 2026-09-21T21:43:51,299 copying skbio/embedding/tests/data/embed1.txt.npy -> build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/data 2026-09-21T21:43:51,300 creating build/lib.linux-armv7l-cpython-311/skbio/io 2026-09-21T21:43:51,300 copying skbio/io/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2026-09-21T21:43:51,301 copying skbio/io/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2026-09-21T21:43:51,301 copying skbio/io/_fileobject.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2026-09-21T21:43:51,302 copying skbio/io/_iosources.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2026-09-21T21:43:51,302 copying skbio/io/_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2026-09-21T21:43:51,303 copying skbio/io/descriptors.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2026-09-21T21:43:51,304 copying skbio/io/registry.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2026-09-21T21:43:51,304 copying skbio/io/util.py -> build/lib.linux-armv7l-cpython-311/skbio/io 2026-09-21T21:43:51,304 creating build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,305 copying skbio/io/format/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,305 copying skbio/io/format/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,306 copying skbio/io/format/_blast.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,307 copying skbio/io/format/_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,307 copying skbio/io/format/binary_dm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,308 copying skbio/io/format/biom.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,308 copying skbio/io/format/blast6.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,309 copying skbio/io/format/blast7.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,310 copying skbio/io/format/clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,310 copying skbio/io/format/embed.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,311 copying skbio/io/format/embl.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,311 copying skbio/io/format/emptyfile.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,312 copying skbio/io/format/fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,312 copying skbio/io/format/fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,313 copying skbio/io/format/genbank.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,313 copying skbio/io/format/gff3.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,314 copying skbio/io/format/lsmat.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,315 copying skbio/io/format/newick.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,315 copying skbio/io/format/ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,316 copying skbio/io/format/phylip.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,317 copying skbio/io/format/phylip_dm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,317 copying skbio/io/format/qseq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,317 copying skbio/io/format/sample_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,318 copying skbio/io/format/stockholm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,318 copying skbio/io/format/taxdump.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format 2026-09-21T21:43:51,319 creating build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,319 copying skbio/io/format/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,320 copying skbio/io/format/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,320 copying skbio/io/format/tests/test_binary_dm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,321 copying skbio/io/format/tests/test_biom.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,321 copying skbio/io/format/tests/test_blast6.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,322 copying skbio/io/format/tests/test_blast7.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,322 copying skbio/io/format/tests/test_clustal.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,323 copying skbio/io/format/tests/test_embed.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,323 copying skbio/io/format/tests/test_embl.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,324 copying skbio/io/format/tests/test_emptyfile.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,324 copying skbio/io/format/tests/test_fasta.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,325 copying skbio/io/format/tests/test_fastq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,326 copying skbio/io/format/tests/test_genbank.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,326 copying skbio/io/format/tests/test_gff3.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,327 copying skbio/io/format/tests/test_lsmat.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,328 copying skbio/io/format/tests/test_newick.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,328 copying skbio/io/format/tests/test_ordination.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,329 copying skbio/io/format/tests/test_phylip.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,330 copying skbio/io/format/tests/test_phylip_dm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,330 copying skbio/io/format/tests/test_qseq.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,331 copying skbio/io/format/tests/test_sample_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,331 copying skbio/io/format/tests/test_sequence_feature_vocabulary.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,332 copying skbio/io/format/tests/test_stockholm.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,333 copying skbio/io/format/tests/test_taxdump.py -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests 2026-09-21T21:43:51,333 creating build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,334 copying skbio/io/format/tests/data/blast6_custom_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,335 copying skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,337 copying skbio/io/format/tests/data/blast6_custom_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,339 copying skbio/io/format/tests/data/blast6_custom_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,341 copying skbio/io/format/tests/data/blast6_default_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,343 copying skbio/io/format/tests/data/blast6_default_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,345 copying skbio/io/format/tests/data/blast6_invalid_column_types -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,347 copying skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,349 copying skbio/io/format/tests/data/blast6_invalid_type_in_column -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,351 copying skbio/io/format/tests/data/blast7_custom_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,354 copying skbio/io/format/tests/data/blast7_custom_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,356 copying skbio/io/format/tests/data/blast7_custom_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,358 copying skbio/io/format/tests/data/blast7_custom_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,360 copying skbio/io/format/tests/data/blast7_default_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,362 copying skbio/io/format/tests/data/blast7_default_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,365 copying skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,367 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,369 copying skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,372 copying skbio/io/format/tests/data/blast7_invalid_gibberish -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,374 copying skbio/io/format/tests/data/blast7_invalid_no_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,376 copying skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,378 copying skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,381 copying skbio/io/format/tests/data/embed1.txt.npy -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,387 copying skbio/io/format/tests/data/embed2.txt.npy -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,395 copying skbio/io/format/tests/data/embl_constructed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,397 copying skbio/io/format/tests/data/embl_feature_level_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,400 copying skbio/io/format/tests/data/embl_feature_level_record_no_FT -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,403 copying skbio/io/format/tests/data/embl_multi_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,406 copying skbio/io/format/tests/data/embl_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,408 copying skbio/io/format/tests/data/embl_single_record_lower -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,410 copying skbio/io/format/tests/data/embl_single_record_simple -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,413 copying skbio/io/format/tests/data/embl_single_record_upper -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,415 copying skbio/io/format/tests/data/embl_uniprot_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,417 copying skbio/io/format/tests/data/embl_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,419 copying skbio/io/format/tests/data/empty -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,421 copying skbio/io/format/tests/data/error_diff_ids.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,423 copying skbio/io/format/tests/data/error_double_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,425 copying skbio/io/format/tests/data/error_double_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,427 copying skbio/io/format/tests/data/error_long_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,430 copying skbio/io/format/tests/data/error_no_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,432 copying skbio/io/format/tests/data/error_qual_del.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,434 copying skbio/io/format/tests/data/error_qual_escape.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,436 copying skbio/io/format/tests/data/error_qual_null.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,438 copying skbio/io/format/tests/data/error_qual_space.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,441 copying skbio/io/format/tests/data/error_qual_tab.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,443 copying skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,445 copying skbio/io/format/tests/data/error_qual_vtab.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,448 copying skbio/io/format/tests/data/error_short_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,450 copying skbio/io/format/tests/data/error_spaces.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,452 copying skbio/io/format/tests/data/error_tabs.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,454 copying skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,457 copying skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,459 copying skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,461 copying skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,463 copying skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,465 copying skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,468 copying skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,470 copying skbio/io/format/tests/data/fasta_10_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,472 copying skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,474 copying skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,476 copying skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,478 copying skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,480 copying skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,482 copying skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,484 copying skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,486 copying skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,489 copying skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,491 copying skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,493 copying skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,495 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,497 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,499 copying skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,501 copying skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,503 copying skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,506 copying skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,508 copying skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,510 copying skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,512 copying skbio/io/format/tests/data/fasta_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,515 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,517 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,519 copying skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,521 copying skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,523 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,525 copying skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,527 copying skbio/io/format/tests/data/fasta_max_width_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,530 copying skbio/io/format/tests/data/fasta_max_width_5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,532 copying skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,534 copying skbio/io/format/tests/data/fasta_multi_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,536 copying skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,538 copying skbio/io/format/tests/data/fasta_multi_seq_spaces -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,540 copying skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,542 copying skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,544 copying skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,546 copying skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,548 copying skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,551 copying skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,553 copying skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,555 copying skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,557 copying skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,559 copying skbio/io/format/tests/data/fasta_single_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,562 copying skbio/io/format/tests/data/fasta_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,564 copying skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,566 copying skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,568 copying skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,570 copying skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,573 copying skbio/io/format/tests/data/fastq_blank_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,575 copying skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,577 copying skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,580 copying skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,582 copying skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,584 copying skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,586 copying skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,588 copying skbio/io/format/tests/data/fastq_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,590 copying skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,592 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,594 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,596 copying skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,598 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,601 copying skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,603 copying skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,605 copying skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,607 copying skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,609 copying skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,611 copying skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,613 copying skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,615 copying skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,617 copying skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,619 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,621 copying skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,624 copying skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,626 copying skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,628 copying skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,630 copying skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,632 copying skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,634 copying skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,636 copying skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,638 copying skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,640 copying skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,642 copying skbio/io/format/tests/data/genbank_missing_locus_name -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,644 copying skbio/io/format/tests/data/genbank_multi_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,646 copying skbio/io/format/tests/data/genbank_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,648 copying skbio/io/format/tests/data/genbank_single_record_lower -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,650 copying skbio/io/format/tests/data/genbank_single_record_upper -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,652 copying skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,654 copying skbio/io/format/tests/data/gff3_bad_missing_directive -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,656 copying skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,658 copying skbio/io/format/tests/data/gff3_dna -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,660 copying skbio/io/format/tests/data/gff3_multi_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,662 copying skbio/io/format/tests/data/gff3_single_record -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,664 copying skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,666 copying skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,668 copying skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,670 copying skbio/io/format/tests/data/legacy9_and_blast7_default -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,672 copying skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,674 copying skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,676 copying skbio/io/format/tests/data/legacy9_mixed_nans -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,678 copying skbio/io/format/tests/data/legacy9_multi_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,680 copying skbio/io/format/tests/data/legacy9_single_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,683 copying skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,685 copying skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,688 copying skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,690 copying skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,692 copying skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,694 copying skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,696 copying skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,698 copying skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,700 copying skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,702 copying skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,704 copying skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,707 copying skbio/io/format/tests/data/ordination_error1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,709 copying skbio/io/format/tests/data/ordination_error10 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,711 copying skbio/io/format/tests/data/ordination_error11 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,714 copying skbio/io/format/tests/data/ordination_error12 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,716 copying skbio/io/format/tests/data/ordination_error13 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,718 copying skbio/io/format/tests/data/ordination_error14 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,720 copying skbio/io/format/tests/data/ordination_error15 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,722 copying skbio/io/format/tests/data/ordination_error16 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,725 copying skbio/io/format/tests/data/ordination_error17 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,727 copying skbio/io/format/tests/data/ordination_error18 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,730 copying skbio/io/format/tests/data/ordination_error19 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,732 copying skbio/io/format/tests/data/ordination_error2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,734 copying skbio/io/format/tests/data/ordination_error20 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,736 copying skbio/io/format/tests/data/ordination_error21 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,738 copying skbio/io/format/tests/data/ordination_error22 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,741 copying skbio/io/format/tests/data/ordination_error23 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,743 copying skbio/io/format/tests/data/ordination_error24 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,745 copying skbio/io/format/tests/data/ordination_error3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,747 copying skbio/io/format/tests/data/ordination_error4 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,750 copying skbio/io/format/tests/data/ordination_error5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,752 copying skbio/io/format/tests/data/ordination_error6 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,755 copying skbio/io/format/tests/data/ordination_error7 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,757 copying skbio/io/format/tests/data/ordination_error8 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,759 copying skbio/io/format/tests/data/ordination_error9 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,761 copying skbio/io/format/tests/data/ordination_example2_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,764 copying skbio/io/format/tests/data/ordination_example3_scores -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,766 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,768 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,771 copying skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,773 copying skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,775 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,778 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,780 copying skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,783 copying skbio/io/format/tests/data/pdb_hits.txt -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,785 copying skbio/io/format/tests/data/phylip_dm_good_simple_strict_square.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,787 copying skbio/io/format/tests/data/phylip_dm_good_simple_strict_square_reader.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,789 copying skbio/io/format/tests/data/phylip_dm_invalid_empty_line_after_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,791 copying skbio/io/format/tests/data/phylip_dm_invalid_empty_line_before_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,793 copying skbio/io/format/tests/data/phylip_dm_invalid_header_too_long.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,796 copying skbio/io/format/tests/data/phylip_dm_invalid_no_dists.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,798 copying skbio/io/format/tests/data/phylip_dm_invalid_no_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,800 copying skbio/io/format/tests/data/phylip_dm_invalid_too_few_columns_sq.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,803 copying skbio/io/format/tests/data/phylip_dm_invalid_too_few_rows.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,805 copying skbio/io/format/tests/data/phylip_dm_invalid_too_many_columns.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,807 copying skbio/io/format/tests/data/phylip_dm_invalid_too_many_rows.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,809 copying skbio/io/format/tests/data/phylip_dm_invalid_wrong_number_dists_lt.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,811 copying skbio/io/format/tests/data/phylip_dm_invalid_zero_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,814 copying skbio/io/format/tests/data/phylip_dm_simple_lt.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,816 copying skbio/io/format/tests/data/phylip_dm_simple_sq.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,818 copying skbio/io/format/tests/data/phylip_dm_sq_invalid_empty_line_after_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,820 copying skbio/io/format/tests/data/phylip_dm_sq_invalid_empty_line_before_header.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,822 copying skbio/io/format/tests/data/phylip_dm_valid_lt.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,824 copying skbio/io/format/tests/data/phylip_dm_valid_sq.dist -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,826 copying skbio/io/format/tests/data/phylip_dna_3_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,828 copying skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,830 copying skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,832 copying skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,834 copying skbio/io/format/tests/data/phylip_invalid_header_too_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,837 copying skbio/io/format/tests/data/phylip_invalid_header_too_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,839 copying skbio/io/format/tests/data/phylip_invalid_no_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,841 copying skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,843 copying skbio/io/format/tests/data/phylip_invalid_seq_too_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,845 copying skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,847 copying skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,850 copying skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,852 copying skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,854 copying skbio/io/format/tests/data/phylip_single_seq_long -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,856 copying skbio/io/format/tests/data/phylip_single_seq_relaxed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,859 copying skbio/io/format/tests/data/phylip_single_seq_short -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,861 copying skbio/io/format/tests/data/phylip_two_chunks -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,863 copying skbio/io/format/tests/data/phylip_variable_length_ids -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,865 copying skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,867 copying skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,869 copying skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,871 copying skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,873 copying skbio/io/format/tests/data/prot.emb -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,881 copying skbio/io/format/tests/data/prot_vec.emb -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,884 copying skbio/io/format/tests/data/qseq_invalid_filter -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,886 copying skbio/io/format/tests/data/qseq_invalid_lane -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,888 copying skbio/io/format/tests/data/qseq_invalid_read -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,890 copying skbio/io/format/tests/data/qseq_invalid_tile -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,892 copying skbio/io/format/tests/data/qseq_invalid_x -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,895 copying skbio/io/format/tests/data/qseq_invalid_y -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,897 copying skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,899 copying skbio/io/format/tests/data/qseq_single_seq_sanger -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,901 copying skbio/io/format/tests/data/qual_2_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,904 copying skbio/io/format/tests/data/qual_3_seqs_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,906 copying skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,908 copying skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,911 copying skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,913 copying skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,915 copying skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,917 copying skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,920 copying skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,922 copying skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,924 copying skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,926 copying skbio/io/format/tests/data/qual_blank_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,928 copying skbio/io/format/tests/data/qual_blanks_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,931 copying skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,933 copying skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,935 copying skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,937 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,939 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,941 copying skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,943 copying skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,945 copying skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,947 copying skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,949 copying skbio/io/format/tests/data/qual_invalid_legacy_format -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,952 copying skbio/io/format/tests/data/qual_invalid_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,954 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,957 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,960 copying skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,962 copying skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,965 copying skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,968 copying skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,971 copying skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,974 copying skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,977 copying skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,980 copying skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,983 copying skbio/io/format/tests/data/qual_max_width_1 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,985 copying skbio/io/format/tests/data/qual_max_width_5 -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,988 copying skbio/io/format/tests/data/qual_multi_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,991 copying skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,993 copying skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,997 copying skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:51,999 copying skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,002 copying skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,004 copying skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,007 copying skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,010 copying skbio/io/format/tests/data/qual_single_seq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,013 copying skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,015 copying skbio/io/format/tests/data/qual_ws_lines_between_records -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,018 copying skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,021 copying skbio/io/format/tests/data/sample-metadata-comments-comment-char-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,024 copying skbio/io/format/tests/data/sample-metadata-comments-mixed-case.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,026 copying skbio/io/format/tests/data/sample-metadata-comments.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,029 copying skbio/io/format/tests/data/sample-metadata-complete-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,032 copying skbio/io/format/tests/data/sample-metadata-empty-rows.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,035 copying skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace-split-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,038 copying skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,041 copying skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,044 copying skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,046 copying skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,049 copying skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,052 copying skbio/io/format/tests/data/stockholm_all_data_types -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,054 copying skbio/io/format/tests/data/stockholm_blank_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,057 copying skbio/io/format/tests/data/stockholm_data_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,059 copying skbio/io/format/tests/data/stockholm_different_padding -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,062 copying skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,064 copying skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,066 copying skbio/io/format/tests/data/stockholm_differing_seq_lengths -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,069 copying skbio/io/format/tests/data/stockholm_duplicate_gc -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,071 copying skbio/io/format/tests/data/stockholm_duplicate_gr -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,073 copying skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,075 copying skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,078 copying skbio/io/format/tests/data/stockholm_extensive -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,080 copying skbio/io/format/tests/data/stockholm_extensive_mixed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,082 copying skbio/io/format/tests/data/stockholm_invalid_data_type -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,085 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,087 copying skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,089 copying skbio/io/format/tests/data/stockholm_malformed_data_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,091 copying skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,093 copying skbio/io/format/tests/data/stockholm_malformed_gf_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,096 copying skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,098 copying skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,100 copying skbio/io/format/tests/data/stockholm_metadata_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,102 copying skbio/io/format/tests/data/stockholm_minimal -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,104 copying skbio/io/format/tests/data/stockholm_missing_footer -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,107 copying skbio/io/format/tests/data/stockholm_missing_header -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,109 copying skbio/io/format/tests/data/stockholm_missing_reference_items -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,111 copying skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,114 copying skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,116 copying skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,118 copying skbio/io/format/tests/data/stockholm_multiple_msa -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,121 copying skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,123 copying skbio/io/format/tests/data/stockholm_multiple_references -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,125 copying skbio/io/format/tests/data/stockholm_multiple_trees -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,127 copying skbio/io/format/tests/data/stockholm_no_data -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,129 copying skbio/io/format/tests/data/stockholm_nonstring_labels -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,132 copying skbio/io/format/tests/data/stockholm_rna -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,134 copying skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,136 copying skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,139 copying skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,141 copying skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,143 copying skbio/io/format/tests/data/stockholm_runon_references -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,146 copying skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,148 copying skbio/io/format/tests/data/stockholm_single_reference -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,150 copying skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,153 copying skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,155 copying skbio/io/format/tests/data/stockholm_two_of_each_metadata -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,158 copying skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,160 copying skbio/io/format/tests/data/taxdump_names.dmp -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,162 copying skbio/io/format/tests/data/taxdump_nodes.dmp -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,164 copying skbio/io/format/tests/data/tiny_embedding_file.npz -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,197 copying skbio/io/format/tests/data/tsv_10_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,199 copying skbio/io/format/tests/data/tsv_8_fields -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,201 copying skbio/io/format/tests/data/whitespace_only -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,204 copying skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,206 copying skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,208 copying skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data 2026-09-21T21:43:52,211 creating build/lib.linux-armv7l-cpython-311/skbio/io/tests 2026-09-21T21:43:52,212 copying skbio/io/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2026-09-21T21:43:52,214 copying skbio/io/tests/test_descriptors.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2026-09-21T21:43:52,217 copying skbio/io/tests/test_format_imports.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2026-09-21T21:43:52,220 copying skbio/io/tests/test_iosources.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2026-09-21T21:43:52,222 copying skbio/io/tests/test_registry.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2026-09-21T21:43:52,226 copying skbio/io/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/io/tests 2026-09-21T21:43:52,229 creating build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2026-09-21T21:43:52,230 copying skbio/io/tests/data/big5_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2026-09-21T21:43:52,233 copying skbio/io/tests/data/big5_file.bz2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2026-09-21T21:43:52,235 copying skbio/io/tests/data/big5_file.gz -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2026-09-21T21:43:52,238 copying skbio/io/tests/data/example_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2026-09-21T21:43:52,240 copying skbio/io/tests/data/example_file.bz2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2026-09-21T21:43:52,243 copying skbio/io/tests/data/example_file.gz -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2026-09-21T21:43:52,245 copying skbio/io/tests/data/real_file -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2026-09-21T21:43:52,247 copying skbio/io/tests/data/real_file_2 -> build/lib.linux-armv7l-cpython-311/skbio/io/tests/data 2026-09-21T21:43:52,250 creating build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,251 copying skbio/metadata/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,254 copying skbio/metadata/_enan.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,257 copying skbio/metadata/_intersection.c -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,282 copying skbio/metadata/_intersection.pyx -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,285 copying skbio/metadata/_interval.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,289 copying skbio/metadata/_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,293 copying skbio/metadata/_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,296 copying skbio/metadata/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,299 copying skbio/metadata/_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,303 copying skbio/metadata/base.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,306 copying skbio/metadata/io.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,309 copying skbio/metadata/missing.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata 2026-09-21T21:43:52,312 creating build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2026-09-21T21:43:52,313 copying skbio/metadata/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2026-09-21T21:43:52,316 copying skbio/metadata/tests/test_enan.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2026-09-21T21:43:52,319 copying skbio/metadata/tests/test_intersection.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2026-09-21T21:43:52,322 copying skbio/metadata/tests/test_interval.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2026-09-21T21:43:52,326 copying skbio/metadata/tests/test_io.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2026-09-21T21:43:52,330 copying skbio/metadata/tests/test_metadata.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2026-09-21T21:43:52,333 copying skbio/metadata/tests/test_metadata_column.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2026-09-21T21:43:52,337 copying skbio/metadata/tests/test_missing.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2026-09-21T21:43:52,340 copying skbio/metadata/tests/test_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests 2026-09-21T21:43:52,343 creating build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,345 copying skbio/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,348 copying skbio/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,351 copying skbio/metadata/tests/data/invalid/data-longer-than-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,354 copying skbio/metadata/tests/data/invalid/directive-after-directives-section.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,356 copying skbio/metadata/tests/data/invalid/directive-before-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,359 copying skbio/metadata/tests/data/invalid/directive-longer-than-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,361 copying skbio/metadata/tests/data/invalid/duplicate-column-names-with-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,364 copying skbio/metadata/tests/data/invalid/duplicate-column-names.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,366 copying skbio/metadata/tests/data/invalid/duplicate-directives.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,369 copying skbio/metadata/tests/data/invalid/duplicate-ids-with-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,372 copying skbio/metadata/tests/data/invalid/duplicate-ids.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,374 copying skbio/metadata/tests/data/invalid/empty-column-name.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,377 copying skbio/metadata/tests/data/invalid/empty-file -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,379 copying skbio/metadata/tests/data/invalid/empty-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,381 copying skbio/metadata/tests/data/invalid/header-only-with-comments-and-empty-rows.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,384 copying skbio/metadata/tests/data/invalid/header-only.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,386 copying skbio/metadata/tests/data/invalid/id-conflicts-with-id-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,389 copying skbio/metadata/tests/data/invalid/invalid-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,392 copying skbio/metadata/tests/data/invalid/missing-unknown-scheme.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,394 copying skbio/metadata/tests/data/invalid/non-utf-8.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,396 copying skbio/metadata/tests/data/invalid/qiime1-empty.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,399 copying skbio/metadata/tests/data/invalid/simple-utf-16be.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,402 copying skbio/metadata/tests/data/invalid/simple-utf-16le.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,404 copying skbio/metadata/tests/data/invalid/types-directive-non-numeric.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,407 copying skbio/metadata/tests/data/invalid/unrecognized-column-type.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,409 copying skbio/metadata/tests/data/invalid/unrecognized-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,412 copying skbio/metadata/tests/data/invalid/whitespace-only-column-name.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,414 copying skbio/metadata/tests/data/invalid/whitespace-only-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid 2026-09-21T21:43:52,417 creating build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,418 copying skbio/metadata/tests/data/valid/BOM-simple.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,421 copying skbio/metadata/tests/data/valid/all-cells-padded.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,424 copying skbio/metadata/tests/data/valid/biom-observation-metadata.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,426 copying skbio/metadata/tests/data/valid/case-insensitive-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,429 copying skbio/metadata/tests/data/valid/column-order.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,432 copying skbio/metadata/tests/data/valid/comments.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,434 copying skbio/metadata/tests/data/valid/complete-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,437 copying skbio/metadata/tests/data/valid/complete-types-directive_w_sk.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,440 copying skbio/metadata/tests/data/valid/empty-rows.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,442 copying skbio/metadata/tests/data/valid/empty-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,445 copying skbio/metadata/tests/data/valid/jagged-trailing-columns.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,448 copying skbio/metadata/tests/data/valid/jagged.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,451 copying skbio/metadata/tests/data/valid/leading-trailing-whitespace.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,453 copying skbio/metadata/tests/data/valid/mac-line-endings.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,456 copying skbio/metadata/tests/data/valid/minimal.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,458 copying skbio/metadata/tests/data/valid/missing-data.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,461 copying skbio/metadata/tests/data/valid/missing-insdc-no-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,464 copying skbio/metadata/tests/data/valid/missing-insdc.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,466 copying skbio/metadata/tests/data/valid/no-columns.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,469 copying skbio/metadata/tests/data/valid/no-id-or-column-name-type-cast.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,472 copying skbio/metadata/tests/data/valid/no-newline-at-eof.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,474 copying skbio/metadata/tests/data/valid/non-standard-characters.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,477 copying skbio/metadata/tests/data/valid/numeric-column.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,479 copying skbio/metadata/tests/data/valid/override-insdc.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,482 copying skbio/metadata/tests/data/valid/partial-types-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,484 copying skbio/metadata/tests/data/valid/qiime1.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,487 copying skbio/metadata/tests/data/valid/qiita-preparation-information.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,490 copying skbio/metadata/tests/data/valid/qiita-sample-information.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,492 copying skbio/metadata/tests/data/valid/recommended-ids.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,495 copying skbio/metadata/tests/data/valid/rows-shorter-than-header.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,497 copying skbio/metadata/tests/data/valid/simple-with-directive.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,500 copying skbio/metadata/tests/data/valid/simple.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,502 copying skbio/metadata/tests/data/valid/simple.txt -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,505 copying skbio/metadata/tests/data/valid/single-column.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,507 copying skbio/metadata/tests/data/valid/single-id.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,510 copying skbio/metadata/tests/data/valid/trailing-columns.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,512 copying skbio/metadata/tests/data/valid/unix-line-endings.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,515 copying skbio/metadata/tests/data/valid/windows-line-endings.tsv -> build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid 2026-09-21T21:43:52,517 creating build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,519 copying skbio/sequence/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,522 copying skbio/sequence/_alphabet.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,525 copying skbio/sequence/_dna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,528 copying skbio/sequence/_genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,532 copying skbio/sequence/_grammared_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,535 copying skbio/sequence/_nucleotide_mixin.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,538 copying skbio/sequence/_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,542 copying skbio/sequence/_repr.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,544 copying skbio/sequence/_rna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,548 copying skbio/sequence/_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,552 copying skbio/sequence/_substitution.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,555 copying skbio/sequence/distance.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,558 copying skbio/sequence/transition.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence 2026-09-21T21:43:52,561 creating build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,562 copying skbio/sequence/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,564 copying skbio/sequence/tests/test_alphabet.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,567 copying skbio/sequence/tests/test_distance.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,570 copying skbio/sequence/tests/test_dna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,573 copying skbio/sequence/tests/test_genetic_code.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,576 copying skbio/sequence/tests/test_grammared_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,579 copying skbio/sequence/tests/test_nucleotide_sequences.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,582 copying skbio/sequence/tests/test_protein.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,585 copying skbio/sequence/tests/test_rna.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,587 copying skbio/sequence/tests/test_sequence.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,593 copying skbio/sequence/tests/test_substitution.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,595 copying skbio/sequence/tests/test_transition.py -> build/lib.linux-armv7l-cpython-311/skbio/sequence/tests 2026-09-21T21:43:52,598 creating build/lib.linux-armv7l-cpython-311/skbio/stats 2026-09-21T21:43:52,599 copying skbio/stats/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2026-09-21T21:43:52,602 copying skbio/stats/_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2026-09-21T21:43:52,604 copying skbio/stats/_subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2026-09-21T21:43:52,607 copying skbio/stats/gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2026-09-21T21:43:52,610 copying skbio/stats/power.py -> build/lib.linux-armv7l-cpython-311/skbio/stats 2026-09-21T21:43:52,613 creating build/lib.linux-armv7l-cpython-311/skbio/stats/composition 2026-09-21T21:43:52,614 copying skbio/stats/composition/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition 2026-09-21T21:43:52,617 copying skbio/stats/composition/_ancom.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition 2026-09-21T21:43:52,620 copying skbio/stats/composition/_ancombc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition 2026-09-21T21:43:52,625 copying skbio/stats/composition/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition 2026-09-21T21:43:52,628 copying skbio/stats/composition/_dirmult.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition 2026-09-21T21:43:52,632 copying skbio/stats/composition/_lme.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition 2026-09-21T21:43:52,634 copying skbio/stats/composition/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition 2026-09-21T21:43:52,637 creating build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests 2026-09-21T21:43:52,638 copying skbio/stats/composition/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests 2026-09-21T21:43:52,641 copying skbio/stats/composition/tests/test_ancom.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests 2026-09-21T21:43:52,644 copying skbio/stats/composition/tests/test_ancombc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests 2026-09-21T21:43:52,648 copying skbio/stats/composition/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests 2026-09-21T21:43:52,652 copying skbio/stats/composition/tests/test_dirmult.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests 2026-09-21T21:43:52,655 copying skbio/stats/composition/tests/test_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests 2026-09-21T21:43:52,658 creating build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data 2026-09-21T21:43:52,659 copying skbio/stats/composition/tests/data/atlas_ancombc2_dunn.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data 2026-09-21T21:43:52,662 copying skbio/stats/composition/tests/data/atlas_ancombc2_global.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data 2026-09-21T21:43:52,664 copying skbio/stats/composition/tests/data/atlas_ancombc2_main.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data 2026-09-21T21:43:52,667 copying skbio/stats/composition/tests/data/atlas_ancombc2_pair.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data 2026-09-21T21:43:52,670 copying skbio/stats/composition/tests/data/atlas_ancombc2_trend.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data 2026-09-21T21:43:52,672 copying skbio/stats/composition/tests/data/atlas_ancombc_global.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data 2026-09-21T21:43:52,674 copying skbio/stats/composition/tests/data/atlas_ancombc_main.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data 2026-09-21T21:43:52,677 copying skbio/stats/composition/tests/data/atlas_feature_table.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data 2026-09-21T21:43:52,680 copying skbio/stats/composition/tests/data/atlas_meta_data.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data 2026-09-21T21:43:52,683 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,684 copying skbio/stats/distance/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,687 copying skbio/stats/distance/_anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,689 copying skbio/stats/distance/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,693 copying skbio/stats/distance/_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,696 copying skbio/stats/distance/_cutils.c -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,729 copying skbio/stats/distance/_cutils.pyx -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,732 copying skbio/stats/distance/_gpu.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,734 copying skbio/stats/distance/_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,738 copying skbio/stats/distance/_mantel_gpu.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,740 copying skbio/stats/distance/_permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,743 copying skbio/stats/distance/_permanova_gpu.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,746 copying skbio/stats/distance/_permdisp.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,749 copying skbio/stats/distance/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance 2026-09-21T21:43:52,751 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2026-09-21T21:43:52,753 copying skbio/stats/distance/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2026-09-21T21:43:52,755 copying skbio/stats/distance/tests/test_anosim.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2026-09-21T21:43:52,758 copying skbio/stats/distance/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2026-09-21T21:43:52,763 copying skbio/stats/distance/tests/test_bioenv.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2026-09-21T21:43:52,767 copying skbio/stats/distance/tests/test_mantel.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2026-09-21T21:43:52,771 copying skbio/stats/distance/tests/test_permanova.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2026-09-21T21:43:52,775 copying skbio/stats/distance/tests/test_permdisp.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2026-09-21T21:43:52,780 copying skbio/stats/distance/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests 2026-09-21T21:43:52,783 creating build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,784 copying skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,787 copying skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,790 copying skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,793 copying skbio/stats/distance/tests/data/df.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,796 copying skbio/stats/distance/tests/data/df_extra_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,799 copying skbio/stats/distance/tests/data/dm.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,802 copying skbio/stats/distance/tests/data/dm2.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,805 copying skbio/stats/distance/tests/data/dm3.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,808 copying skbio/stats/distance/tests/data/dm4.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,811 copying skbio/stats/distance/tests/data/dm_reordered.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,814 copying skbio/stats/distance/tests/data/exp_results.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,817 copying skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,820 copying skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,823 copying skbio/stats/distance/tests/data/frameSeries_dm.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,827 copying skbio/stats/distance/tests/data/frameSeries_grouping.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,829 copying skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,833 copying skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,836 copying skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,840 copying skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,843 copying skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,846 copying skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,848 copying skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,851 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,853 copying skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,856 copying skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,858 copying skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data 2026-09-21T21:43:52,861 creating build/lib.linux-armv7l-cpython-311/skbio/stats/evolve 2026-09-21T21:43:52,862 copying skbio/stats/evolve/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve 2026-09-21T21:43:52,864 copying skbio/stats/evolve/_hommola.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve 2026-09-21T21:43:52,866 creating build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests 2026-09-21T21:43:52,867 copying skbio/stats/evolve/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests 2026-09-21T21:43:52,870 copying skbio/stats/evolve/tests/test_hommola.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests 2026-09-21T21:43:52,872 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,873 copying skbio/stats/ordination/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,876 copying skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,878 copying skbio/stats/ordination/_center_distance_matrix_numba.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,881 copying skbio/stats/ordination/_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,883 copying skbio/stats/ordination/_cutils.c -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,905 copying skbio/stats/ordination/_cutils.pyx -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,907 copying skbio/stats/ordination/_mmvec.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,911 copying skbio/stats/ordination/_ordination_results.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,914 copying skbio/stats/ordination/_principal_component_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,917 copying skbio/stats/ordination/_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,920 copying skbio/stats/ordination/_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,923 copying skbio/stats/ordination/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination 2026-09-21T21:43:52,926 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2026-09-21T21:43:52,927 copying skbio/stats/ordination/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2026-09-21T21:43:52,929 copying skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2026-09-21T21:43:52,932 copying skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2026-09-21T21:43:52,935 copying skbio/stats/ordination/tests/test_mmvec.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2026-09-21T21:43:52,938 copying skbio/stats/ordination/tests/test_ordination_results.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2026-09-21T21:43:52,941 copying skbio/stats/ordination/tests/test_principal_component_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2026-09-21T21:43:52,944 copying skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2026-09-21T21:43:52,947 copying skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2026-09-21T21:43:52,950 copying skbio/stats/ordination/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests 2026-09-21T21:43:52,952 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,953 copying skbio/stats/ordination/tests/data/L&L_CA_data -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,955 copying skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,958 copying skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,960 copying skbio/stats/ordination/tests/data/PCoA_sample_data -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,962 copying skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,964 copying skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,966 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,968 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,970 copying skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,973 copying skbio/stats/ordination/tests/data/PCoA_skbio -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,975 copying skbio/stats/ordination/tests/data/example2_X -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,977 copying skbio/stats/ordination/tests/data/example2_Y -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,979 copying skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,981 copying skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,983 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,986 copying skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,988 copying skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,990 copying skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,992 copying skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,994 copying skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,996 copying skbio/stats/ordination/tests/data/example3_X -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:52,998 copying skbio/stats/ordination/tests/data/example3_Y -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,001 copying skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,003 copying skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,005 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,007 copying skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,009 copying skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,011 copying skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,013 copying skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,015 copying skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,017 copying skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,020 copying skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,022 copying skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,024 copying skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,027 copying skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,029 copying skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,031 copying skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,033 copying skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,036 copying skbio/stats/ordination/tests/data/varechem.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,038 copying skbio/stats/ordination/tests/data/varespec.csv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data 2026-09-21T21:43:53,040 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf 2026-09-21T21:43:53,041 copying skbio/stats/ordination/tests/data/cf/README.md -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf 2026-09-21T21:43:53,044 copying skbio/stats/ordination/tests/data/cf/metabolite_meta.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf 2026-09-21T21:43:53,046 copying skbio/stats/ordination/tests/data/cf/metabolites.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf 2026-09-21T21:43:53,048 copying skbio/stats/ordination/tests/data/cf/microbe_meta.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf 2026-09-21T21:43:53,050 copying skbio/stats/ordination/tests/data/cf/microbes.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf 2026-09-21T21:43:53,052 creating build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils 2026-09-21T21:43:53,053 copying skbio/stats/ordination/tests/data/soils/README.md -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils 2026-09-21T21:43:53,055 copying skbio/stats/ordination/tests/data/soils/metabolites.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils 2026-09-21T21:43:53,058 copying skbio/stats/ordination/tests/data/soils/metabolites.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils 2026-09-21T21:43:53,060 copying skbio/stats/ordination/tests/data/soils/microbes.tsv -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils 2026-09-21T21:43:53,063 copying skbio/stats/ordination/tests/data/soils/microbes.tsv.sha256 -> build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils 2026-09-21T21:43:53,065 creating build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2026-09-21T21:43:53,066 copying skbio/stats/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2026-09-21T21:43:53,068 copying skbio/stats/tests/test_gradient.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2026-09-21T21:43:53,072 copying skbio/stats/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2026-09-21T21:43:53,074 copying skbio/stats/tests/test_power.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2026-09-21T21:43:53,077 copying skbio/stats/tests/test_subsample.py -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests 2026-09-21T21:43:53,080 creating build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,081 copying skbio/stats/tests/data/cr_data_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,083 copying skbio/stats/tests/data/cr_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,085 copying skbio/stats/tests/data/cr_no_data_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,087 copying skbio/stats/tests/data/cr_no_data_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,089 copying skbio/stats/tests/data/gr_w_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,091 copying skbio/stats/tests/data/gr_w_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,093 copying skbio/stats/tests/data/gr_wo_msg_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,095 copying skbio/stats/tests/data/gr_wo_msg_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,097 copying skbio/stats/tests/data/vr_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,100 copying skbio/stats/tests/data/vr_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,102 copying skbio/stats/tests/data/vr_real_out -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,104 copying skbio/stats/tests/data/vr_real_raw -> build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data 2026-09-21T21:43:53,106 creating build/lib.linux-armv7l-cpython-311/skbio/table 2026-09-21T21:43:53,107 copying skbio/table/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/table 2026-09-21T21:43:53,110 copying skbio/table/_augment.py -> build/lib.linux-armv7l-cpython-311/skbio/table 2026-09-21T21:43:53,112 copying skbio/table/_base.py -> build/lib.linux-armv7l-cpython-311/skbio/table 2026-09-21T21:43:53,114 copying skbio/table/_tabular.py -> build/lib.linux-armv7l-cpython-311/skbio/table 2026-09-21T21:43:53,117 creating build/lib.linux-armv7l-cpython-311/skbio/table/tests 2026-09-21T21:43:53,118 copying skbio/table/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests 2026-09-21T21:43:53,120 copying skbio/table/tests/test_augment.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests 2026-09-21T21:43:53,123 copying skbio/table/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests 2026-09-21T21:43:53,125 copying skbio/table/tests/test_tabular.py -> build/lib.linux-armv7l-cpython-311/skbio/table/tests 2026-09-21T21:43:53,128 creating build/lib.linux-armv7l-cpython-311/skbio/tests 2026-09-21T21:43:53,129 copying skbio/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2026-09-21T21:43:53,131 copying skbio/tests/test_base.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2026-09-21T21:43:53,133 copying skbio/tests/test_config.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2026-09-21T21:43:53,136 copying skbio/tests/test_workflow.py -> build/lib.linux-armv7l-cpython-311/skbio/tests 2026-09-21T21:43:53,138 creating build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,139 copying skbio/tree/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,142 copying skbio/tree/_c_me.c -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,188 copying skbio/tree/_c_me.pyx -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,192 copying skbio/tree/_c_nj.c -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,216 copying skbio/tree/_c_nj.pyx -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,218 copying skbio/tree/_compare.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,221 copying skbio/tree/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,224 copying skbio/tree/_majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,227 copying skbio/tree/_me.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,231 copying skbio/tree/_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,234 copying skbio/tree/_tree.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,241 copying skbio/tree/_upgma.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,244 copying skbio/tree/_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/tree 2026-09-21T21:43:53,247 creating build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2026-09-21T21:43:53,248 copying skbio/tree/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2026-09-21T21:43:53,251 copying skbio/tree/tests/test_compare.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2026-09-21T21:43:53,253 copying skbio/tree/tests/test_majority_rule.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2026-09-21T21:43:53,256 copying skbio/tree/tests/test_me.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2026-09-21T21:43:53,261 copying skbio/tree/tests/test_nj.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2026-09-21T21:43:53,264 copying skbio/tree/tests/test_tree.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2026-09-21T21:43:53,270 copying skbio/tree/tests/test_upgma.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2026-09-21T21:43:53,272 copying skbio/tree/tests/test_utils.py -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests 2026-09-21T21:43:53,275 creating build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data 2026-09-21T21:43:53,276 copying skbio/tree/tests/data/mp100.bme.nni.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data 2026-09-21T21:43:53,279 copying skbio/tree/tests/data/mp100.bme.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data 2026-09-21T21:43:53,282 copying skbio/tree/tests/data/mp100.gme.nni.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data 2026-09-21T21:43:53,284 copying skbio/tree/tests/data/mp100.gme.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data 2026-09-21T21:43:53,286 copying skbio/tree/tests/data/mp100.nj.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data 2026-09-21T21:43:53,289 copying skbio/tree/tests/data/mp100.phy -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data 2026-09-21T21:43:53,293 copying skbio/tree/tests/data/mp100.upgma.nwk -> build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data 2026-09-21T21:43:53,295 creating build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,296 copying skbio/util/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,299 copying skbio/util/_array.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,302 copying skbio/util/_decorator.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,305 copying skbio/util/_docstring.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,308 copying skbio/util/_exception.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,310 copying skbio/util/_gpu.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,312 copying skbio/util/_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,315 copying skbio/util/_optionals.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,317 copying skbio/util/_plotting.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,320 copying skbio/util/_random.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,323 copying skbio/util/_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,326 copying skbio/util/_typing.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,329 copying skbio/util/_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/util 2026-09-21T21:43:53,332 creating build/lib.linux-armv7l-cpython-311/skbio/util/tests 2026-09-21T21:43:53,333 copying skbio/util/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2026-09-21T21:43:53,335 copying skbio/util/tests/test_array.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2026-09-21T21:43:53,339 copying skbio/util/tests/test_decorator.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2026-09-21T21:43:53,342 copying skbio/util/tests/test_docstring.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2026-09-21T21:43:53,345 copying skbio/util/tests/test_misc.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2026-09-21T21:43:53,347 copying skbio/util/tests/test_optionals.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2026-09-21T21:43:53,350 copying skbio/util/tests/test_plotting.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2026-09-21T21:43:53,353 copying skbio/util/tests/test_random.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2026-09-21T21:43:53,355 copying skbio/util/tests/test_testing.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2026-09-21T21:43:53,359 copying skbio/util/tests/test_warning.py -> build/lib.linux-armv7l-cpython-311/skbio/util/tests 2026-09-21T21:43:53,364 running build_ext 2026-09-21T21:43:53,376 building 'skbio.metadata._intersection' extension 2026-09-21T21:43:53,379 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/metadata/_intersection.c -o build/temp.linux-armv7l-cpython-311/skbio/metadata/_intersection.o 2026-09-21T21:44:08,867 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/metadata/_intersection.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.cpython-311-arm-linux-gnueabihf.so 2026-09-21T21:44:09,010 building 'skbio.tree._c_nj' extension 2026-09-21T21:44:09,012 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/tree/_c_nj.c -o build/temp.linux-armv7l-cpython-311/skbio/tree/_c_nj.o -I. -fopenmp 2026-09-21T21:44:21,701 In function ‘__pyx_pf_5skbio_4tree_5_c_nj_2nj_minq_cy’, 2026-09-21T21:44:21,702 inlined from ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’ at skbio/tree/_c_nj.c:19395:13: 2026-09-21T21:44:21,719 skbio/tree/_c_nj.c:19581:16: warning: ‘__pyx_v_min_j’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:44:21,719 19581 | __pyx_t_14 = PyLong_FromSsize_t(__pyx_v_min_j); if (unlikely(!__pyx_t_14)) __PYX_ERR(0, 70, __pyx_L1_error) 2026-09-21T21:44:21,720 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-21T21:44:21,720 skbio/tree/_c_nj.c: In function ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’: 2026-09-21T21:44:21,736 skbio/tree/_c_nj.c:19413:14: note: ‘__pyx_v_min_j’ was declared here 2026-09-21T21:44:21,736 19413 | Py_ssize_t __pyx_v_min_j; 2026-09-21T21:44:21,737 | ^~~~~~~~~~~~~ 2026-09-21T21:44:21,737 In function ‘__pyx_pf_5skbio_4tree_5_c_nj_2nj_minq_cy’, 2026-09-21T21:44:21,738 inlined from ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’ at skbio/tree/_c_nj.c:19395:13: 2026-09-21T21:44:21,752 skbio/tree/_c_nj.c:19579:16: warning: ‘__pyx_v_min_i’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:44:21,753 19579 | __pyx_t_13 = PyLong_FromSsize_t(__pyx_v_min_i); if (unlikely(!__pyx_t_13)) __PYX_ERR(0, 70, __pyx_L1_error) 2026-09-21T21:44:21,754 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-21T21:44:21,754 skbio/tree/_c_nj.c: In function ‘__pyx_fuse_0__pyx_pw_5skbio_4tree_5_c_nj_3nj_minq_cy’: 2026-09-21T21:44:21,770 skbio/tree/_c_nj.c:19412:14: note: ‘__pyx_v_min_i’ was declared here 2026-09-21T21:44:21,770 19412 | Py_ssize_t __pyx_v_min_i; 2026-09-21T21:44:21,771 | ^~~~~~~~~~~~~ 2026-09-21T21:44:21,989 In function ‘__pyx_pf_5skbio_4tree_5_c_nj_4nj_minq_cy’, 2026-09-21T21:44:21,990 inlined from ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’ at skbio/tree/_c_nj.c:19701:13: 2026-09-21T21:44:22,005 skbio/tree/_c_nj.c:19887:16: warning: ‘__pyx_v_min_j’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:44:22,006 19887 | __pyx_t_14 = PyLong_FromSsize_t(__pyx_v_min_j); if (unlikely(!__pyx_t_14)) __PYX_ERR(0, 70, __pyx_L1_error) 2026-09-21T21:44:22,006 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-21T21:44:22,007 skbio/tree/_c_nj.c: In function ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’: 2026-09-21T21:44:22,023 skbio/tree/_c_nj.c:19719:14: note: ‘__pyx_v_min_j’ was declared here 2026-09-21T21:44:22,023 19719 | Py_ssize_t __pyx_v_min_j; 2026-09-21T21:44:22,024 | ^~~~~~~~~~~~~ 2026-09-21T21:44:22,025 In function ‘__pyx_pf_5skbio_4tree_5_c_nj_4nj_minq_cy’, 2026-09-21T21:44:22,025 inlined from ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’ at skbio/tree/_c_nj.c:19701:13: 2026-09-21T21:44:22,039 skbio/tree/_c_nj.c:19885:16: warning: ‘__pyx_v_min_i’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:44:22,040 19885 | __pyx_t_13 = PyLong_FromSsize_t(__pyx_v_min_i); if (unlikely(!__pyx_t_13)) __PYX_ERR(0, 70, __pyx_L1_error) 2026-09-21T21:44:22,041 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-09-21T21:44:22,041 skbio/tree/_c_nj.c: In function ‘__pyx_fuse_1__pyx_pw_5skbio_4tree_5_c_nj_5nj_minq_cy’: 2026-09-21T21:44:22,057 skbio/tree/_c_nj.c:19718:14: note: ‘__pyx_v_min_i’ was declared here 2026-09-21T21:44:22,058 19718 | Py_ssize_t __pyx_v_min_i; 2026-09-21T21:44:22,058 | ^~~~~~~~~~~~~ 2026-09-21T21:44:27,408 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/tree/_c_nj.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-09-21T21:44:27,557 building 'skbio.tree._c_me' extension 2026-09-21T21:44:27,558 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/tree/_c_me.c -o build/temp.linux-armv7l-cpython-311/skbio/tree/_c_me.o -I. -fopenmp 2026-09-21T21:45:26,216 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/tree/_c_me.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-09-21T21:45:26,438 building 'skbio.diversity._phylogenetic' extension 2026-09-21T21:45:26,439 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/diversity/_phylogenetic.c -o build/temp.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.o 2026-09-21T21:45:33,951 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.cpython-311-arm-linux-gnueabihf.so 2026-09-21T21:45:34,285 building 'skbio.stats.ordination._cutils' extension 2026-09-21T21:45:34,286 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/stats/ordination/_cutils.c -o build/temp.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.o -I. -fopenmp 2026-09-21T21:45:39,989 skbio/stats/ordination/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_10ordination_7_cutils_8e_matrix_means_cy._omp_fn.0’: 2026-09-21T21:45:40,008 skbio/stats/ordination/_cutils.c:21221:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:45:40,008 21221 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2026-09-21T21:45:40,009 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2026-09-21T21:45:40,026 skbio/stats/ordination/_cutils.c:20932:7: note: ‘__pyx_clineno’ was declared here 2026-09-21T21:45:40,027 20932 | int __pyx_clineno = 0; 2026-09-21T21:45:40,028 | ^~~~~~~~~~~~~ 2026-09-21T21:45:40,102 skbio/stats/ordination/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_10ordination_7_cutils_6e_matrix_means_cy._omp_fn.0’: 2026-09-21T21:45:40,120 skbio/stats/ordination/_cutils.c:20655:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:45:40,121 20655 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2026-09-21T21:45:40,122 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2026-09-21T21:45:40,138 skbio/stats/ordination/_cutils.c:20366:7: note: ‘__pyx_clineno’ was declared here 2026-09-21T21:45:40,139 20366 | int __pyx_clineno = 0; 2026-09-21T21:45:40,140 | ^~~~~~~~~~~~~ 2026-09-21T21:45:57,127 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-09-21T21:45:57,292 building 'skbio.stats.distance._cutils' extension 2026-09-21T21:45:57,293 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/stats/distance/_cutils.c -o build/temp.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.o -I. -fopenmp 2026-09-21T21:46:05,338 skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_48permanova_f_stat_sW_cy._omp_fn.0’: 2026-09-21T21:46:05,366 skbio/stats/distance/_cutils.c:31020:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:46:05,366 31020 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2026-09-21T21:46:05,367 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2026-09-21T21:46:05,392 skbio/stats/distance/_cutils.c:30623:7: note: ‘__pyx_clineno’ was declared here 2026-09-21T21:46:05,393 30623 | int __pyx_clineno = 0; 2026-09-21T21:46:05,394 | ^~~~~~~~~~~~~ 2026-09-21T21:46:05,521 skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_46permanova_f_stat_sW_cy._omp_fn.0’: 2026-09-21T21:46:05,549 skbio/stats/distance/_cutils.c:30364:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:46:05,549 30364 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2026-09-21T21:46:05,550 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2026-09-21T21:46:05,576 skbio/stats/distance/_cutils.c:29967:7: note: ‘__pyx_clineno’ was declared here 2026-09-21T21:46:05,577 29967 | int __pyx_clineno = 0; 2026-09-21T21:46:05,578 | ^~~~~~~~~~~~~ 2026-09-21T21:46:08,021 skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_40mantel_perm_pearsonr_condensed_cy._omp_fn.0’: 2026-09-21T21:46:08,046 skbio/stats/distance/_cutils.c:28781:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:46:08,047 28781 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2026-09-21T21:46:08,048 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2026-09-21T21:46:08,073 skbio/stats/distance/_cutils.c:28391:7: note: ‘__pyx_clineno’ was declared here 2026-09-21T21:46:08,073 28391 | int __pyx_clineno = 0; 2026-09-21T21:46:08,074 | ^~~~~~~~~~~~~ 2026-09-21T21:46:08,214 skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_42mantel_perm_pearsonr_condensed_cy._omp_fn.0’: 2026-09-21T21:46:08,238 skbio/stats/distance/_cutils.c:29459:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:46:08,239 29459 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2026-09-21T21:46:08,240 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2026-09-21T21:46:08,265 skbio/stats/distance/_cutils.c:29069:7: note: ‘__pyx_clineno’ was declared here 2026-09-21T21:46:08,265 29069 | int __pyx_clineno = 0; 2026-09-21T21:46:08,266 | ^~~~~~~~~~~~~ 2026-09-21T21:46:08,896 skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_52permanova_f_stat_sW_condensed_cy._omp_fn.0’: 2026-09-21T21:46:08,923 skbio/stats/distance/_cutils.c:31972:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:46:08,923 31972 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2026-09-21T21:46:08,924 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2026-09-21T21:46:08,952 skbio/stats/distance/_cutils.c:31539:7: note: ‘__pyx_clineno’ was declared here 2026-09-21T21:46:08,952 31539 | int __pyx_clineno = 0; 2026-09-21T21:46:08,953 | ^~~~~~~~~~~~~ 2026-09-21T21:46:09,130 skbio/stats/distance/_cutils.c: In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_54permanova_f_stat_sW_condensed_cy._omp_fn.0’: 2026-09-21T21:46:09,158 skbio/stats/distance/_cutils.c:32668:138: warning: ‘__pyx_clineno’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:46:09,158 32668 | __pyx_parallel_filename = __pyx_filename; __pyx_parallel_lineno = __pyx_lineno; __pyx_parallel_clineno = __pyx_clineno; 2026-09-21T21:46:09,159 | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ 2026-09-21T21:46:09,187 skbio/stats/distance/_cutils.c:32235:7: note: ‘__pyx_clineno’ was declared here 2026-09-21T21:46:09,188 32235 | int __pyx_clineno = 0; 2026-09-21T21:46:09,188 | ^~~~~~~~~~~~~ 2026-09-21T21:46:23,429 In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_54permanova_f_stat_sW_condensed_cy’, 2026-09-21T21:46:23,429 inlined from ‘__pyx_fuse_1__pyx_pw_5skbio_5stats_8distance_7_cutils_55permanova_f_stat_sW_condensed_cy’ at skbio/stats/distance/_cutils.c:32193:13: 2026-09-21T21:46:23,457 skbio/stats/distance/_cutils.c:32357:25: warning: ‘__pyx_v_local_s_W’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:46:23,457 32357 | #pragma omp parallel reduction(+:__pyx_v_local_s_W) reduction(+:__pyx_v_s_W) private(__pyx_t_1, __pyx_t_5, __pyx_t_6, __pyx_t_7, __pyx_t_8, __pyx_t_9) __Pyx_shared_in_cpython_freethreading(__pyx_parallel_freethreading_mutex) private(__pyx_filename, __pyx_lineno, __pyx_clineno) shared(__pyx_parallel_why, __pyx_parallel_exc_type, __pyx_parallel_exc_value, __pyx_parallel_exc_tb) 2026-09-21T21:46:23,458 | ^~~ 2026-09-21T21:46:23,459 skbio/stats/distance/_cutils.c: In function ‘__pyx_fuse_1__pyx_pw_5skbio_5stats_8distance_7_cutils_55permanova_f_stat_sW_condensed_cy’: 2026-09-21T21:46:23,486 skbio/stats/distance/_cutils.c:32212:10: note: ‘__pyx_v_local_s_W’ was declared here 2026-09-21T21:46:23,487 32212 | double __pyx_v_local_s_W; 2026-09-21T21:46:23,488 | ^~~~~~~~~~~~~~~~~ 2026-09-21T21:46:23,788 In function ‘__pyx_pf_5skbio_5stats_8distance_7_cutils_52permanova_f_stat_sW_condensed_cy’, 2026-09-21T21:46:23,789 inlined from ‘__pyx_fuse_0__pyx_pw_5skbio_5stats_8distance_7_cutils_53permanova_f_stat_sW_condensed_cy’ at skbio/stats/distance/_cutils.c:31497:13: 2026-09-21T21:46:23,818 skbio/stats/distance/_cutils.c:31661:25: warning: ‘__pyx_v_local_s_W’ may be used uninitialized [-Wmaybe-uninitialized] 2026-09-21T21:46:23,819 31661 | #pragma omp parallel reduction(+:__pyx_v_local_s_W) reduction(+:__pyx_v_s_W) private(__pyx_t_1, __pyx_t_5, __pyx_t_6, __pyx_t_7, __pyx_t_8, __pyx_t_9) __Pyx_shared_in_cpython_freethreading(__pyx_parallel_freethreading_mutex) private(__pyx_filename, __pyx_lineno, __pyx_clineno) shared(__pyx_parallel_why, __pyx_parallel_exc_type, __pyx_parallel_exc_value, __pyx_parallel_exc_tb) 2026-09-21T21:46:23,820 | ^~~ 2026-09-21T21:46:23,820 skbio/stats/distance/_cutils.c: In function ‘__pyx_fuse_0__pyx_pw_5skbio_5stats_8distance_7_cutils_53permanova_f_stat_sW_condensed_cy’: 2026-09-21T21:46:23,847 skbio/stats/distance/_cutils.c:31516:10: note: ‘__pyx_v_local_s_W’ was declared here 2026-09-21T21:46:23,848 31516 | double __pyx_v_local_s_W; 2026-09-21T21:46:23,849 | ^~~~~~~~~~~~~~~~~ 2026-09-21T21:46:31,231 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-09-21T21:46:31,427 building 'skbio.alignment._cutils' extension 2026-09-21T21:46:31,430 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/tmp/pip-build-env-drvonp2q/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c skbio/alignment/_cutils.c -o build/temp.linux-armv7l-cpython-311/skbio/alignment/_cutils.o -I. -fopenmp 2026-09-21T21:46:32,082 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_16_fill_matrix_linear’: 2026-09-21T21:46:32,097 skbio/alignment/_cutils.c:20570:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-09-21T21:46:32,098 20570 | __pyx_v_row = (&(*((float const *) ( /* dim=1 */ ((char *) (((float const *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) )))); 2026-09-21T21:46:32,099 | ^ 2026-09-21T21:46:32,108 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_18_fill_matrix_linear’: 2026-09-21T21:46:32,125 skbio/alignment/_cutils.c:20914:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-09-21T21:46:32,125 20914 | __pyx_v_row = (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) )))); 2026-09-21T21:46:32,126 | ^ 2026-09-21T21:46:32,150 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_22_fill_matrix_affine’: 2026-09-21T21:46:32,167 skbio/alignment/_cutils.c:21558:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-09-21T21:46:32,167 21558 | __pyx_v_row = (&(*((float const *) ( /* dim=1 */ ((char *) (((float const *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) )))); 2026-09-21T21:46:32,168 | ^ 2026-09-21T21:46:32,183 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_24_fill_matrix_affine’: 2026-09-21T21:46:32,200 skbio/alignment/_cutils.c:22013:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-09-21T21:46:32,201 22013 | __pyx_v_row = (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_query.data + __pyx_t_5 * __pyx_v_query.strides[0]) )) + __pyx_t_6)) )))); 2026-09-21T21:46:32,202 | ^ 2026-09-21T21:46:32,223 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_28_fill_matrix_linear_mn’: 2026-09-21T21:46:32,241 skbio/alignment/_cutils.c:22673:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-09-21T21:46:32,242 22673 | __pyx_v_row = (&(*((float const *) ( /* dim=1 */ ((char *) (((float const *) ( /* dim=0 */ (__pyx_v_scores.data + __pyx_t_5 * __pyx_v_scores.strides[0]) )) + __pyx_t_6)) )))); 2026-09-21T21:46:32,243 | ^ 2026-09-21T21:46:32,252 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_30_fill_matrix_linear_mn’: 2026-09-21T21:46:32,270 skbio/alignment/_cutils.c:23005:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-09-21T21:46:32,270 23005 | __pyx_v_row = (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_scores.data + __pyx_t_5 * __pyx_v_scores.strides[0]) )) + __pyx_t_6)) )))); 2026-09-21T21:46:32,271 | ^ 2026-09-21T21:46:32,295 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_34_fill_matrix_affine_mn’: 2026-09-21T21:46:32,313 skbio/alignment/_cutils.c:23637:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-09-21T21:46:32,314 23637 | __pyx_v_row = (&(*((float const *) ( /* dim=1 */ ((char *) (((float const *) ( /* dim=0 */ (__pyx_v_scores.data + __pyx_t_5 * __pyx_v_scores.strides[0]) )) + __pyx_t_6)) )))); 2026-09-21T21:46:32,314 | ^ 2026-09-21T21:46:32,331 skbio/alignment/_cutils.c: In function ‘__pyx_pf_5skbio_9alignment_7_cutils_36_fill_matrix_affine_mn’: 2026-09-21T21:46:32,350 skbio/alignment/_cutils.c:24080:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-09-21T21:46:32,351 24080 | __pyx_v_row = (&(*((double const *) ( /* dim=1 */ ((char *) (((double const *) ( /* dim=0 */ (__pyx_v_scores.data + __pyx_t_5 * __pyx_v_scores.strides[0]) )) + __pyx_t_6)) )))); 2026-09-21T21:46:32,351 | ^ 2026-09-21T21:46:59,413 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/skbio/alignment/_cutils.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.cpython-311-arm-linux-gnueabihf.so -fopenmp 2026-09-21T21:46:59,584 installing to build/bdist.linux-armv7l/wheel 2026-09-21T21:46:59,585 running install 2026-09-21T21:46:59,608 running install_lib 2026-09-21T21:46:59,615 creating build/bdist.linux-armv7l/wheel 2026-09-21T21:46:59,618 creating build/bdist.linux-armv7l/wheel/skbio 2026-09-21T21:46:59,620 creating build/bdist.linux-armv7l/wheel/skbio/metadata 2026-09-21T21:46:59,621 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/io.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,624 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_mixin.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,627 creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests 2026-09-21T21:46:59,628 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_mixin.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2026-09-21T21:46:59,631 creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests/data 2026-09-21T21:46:59,634 creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests/data/valid 2026-09-21T21:46:59,635 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/qiime1.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,637 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/minimal.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,639 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/partial-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,641 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/single-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,642 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/single-column.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,644 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/simple.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,646 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/leading-trailing-whitespace.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,647 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/missing-insdc-no-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,649 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/simple.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,651 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/missing-data.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,653 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/mac-line-endings.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,654 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/qiita-sample-information.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,656 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/empty-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,658 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/empty-rows.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,660 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/jagged-trailing-columns.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,661 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/qiita-preparation-information.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,663 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/recommended-ids.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,665 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/windows-line-endings.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,667 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/comments.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,669 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/override-insdc.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,670 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/unix-line-endings.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,672 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/case-insensitive-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,674 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/no-newline-at-eof.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,676 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/numeric-column.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,678 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/no-id-or-column-name-type-cast.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,680 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/missing-insdc.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,682 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/column-order.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,683 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/all-cells-padded.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,685 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/simple-with-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,686 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/jagged.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,688 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/complete-types-directive_w_sk.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,690 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/non-standard-characters.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,692 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/trailing-columns.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,693 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/rows-shorter-than-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,695 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/BOM-simple.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,697 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/biom-observation-metadata.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,699 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/complete-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,700 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/valid/no-columns.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/valid 2026-09-21T21:46:59,703 creating build/bdist.linux-armv7l/wheel/skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,704 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/missing-unknown-scheme.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,706 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/empty-file -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,708 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-column-names.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,710 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/directive-before-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,711 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/empty-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,713 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/qiime1-empty.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,715 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/empty-column-name.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,717 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/header-only-with-comments-and-empty-rows.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,719 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,720 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/header-only.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,722 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/directive-after-directives-section.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,724 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-directives.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,725 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/whitespace-only-column-name.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,727 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-ids-with-whitespace.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,729 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/whitespace-only-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,730 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/unrecognized-column-type.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,732 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/types-directive-non-numeric.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,734 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/non-utf-8.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,736 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/directive-longer-than-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,737 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/id-conflicts-with-id-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,739 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/simple-utf-16be.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,741 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,742 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-ids.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,744 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/unrecognized-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,746 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/duplicate-column-names-with-whitespace.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,748 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/simple-utf-16le.txt -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,750 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/invalid-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,752 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/data/invalid/data-longer-than-header.tsv -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests/data/invalid 2026-09-21T21:46:59,753 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_missing.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2026-09-21T21:46:59,755 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_metadata_column.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2026-09-21T21:46:59,759 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2026-09-21T21:46:59,762 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_interval.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2026-09-21T21:46:59,765 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2026-09-21T21:46:59,766 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_intersection.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2026-09-21T21:46:59,769 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_enan.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2026-09-21T21:46:59,770 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/tests/test_io.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata/tests 2026-09-21T21:46:59,773 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_enan.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,775 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,777 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.c -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,794 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,797 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/missing.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,799 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_interval.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,803 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_repr.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,805 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,825 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_testing.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,829 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/base.py -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,831 copying build/lib.linux-armv7l-cpython-311/skbio/metadata/_intersection.pyx -> build/bdist.linux-armv7l/wheel/./skbio/metadata 2026-09-21T21:46:59,835 creating build/bdist.linux-armv7l/wheel/skbio/table 2026-09-21T21:46:59,836 copying build/lib.linux-armv7l-cpython-311/skbio/table/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/table 2026-09-21T21:46:59,838 creating build/bdist.linux-armv7l/wheel/skbio/table/tests 2026-09-21T21:46:59,839 copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/test_augment.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests 2026-09-21T21:46:59,842 copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests 2026-09-21T21:46:59,844 copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests 2026-09-21T21:46:59,846 copying build/lib.linux-armv7l-cpython-311/skbio/table/tests/test_tabular.py -> build/bdist.linux-armv7l/wheel/./skbio/table/tests 2026-09-21T21:46:59,848 copying build/lib.linux-armv7l-cpython-311/skbio/table/_tabular.py -> build/bdist.linux-armv7l/wheel/./skbio/table 2026-09-21T21:46:59,851 copying build/lib.linux-armv7l-cpython-311/skbio/table/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/table 2026-09-21T21:46:59,853 copying build/lib.linux-armv7l-cpython-311/skbio/table/_augment.py -> build/bdist.linux-armv7l/wheel/./skbio/table 2026-09-21T21:46:59,856 copying build/lib.linux-armv7l-cpython-311/skbio/_base.py -> build/bdist.linux-armv7l/wheel/./skbio 2026-09-21T21:46:59,859 creating build/bdist.linux-armv7l/wheel/skbio/binaries 2026-09-21T21:46:59,860 copying build/lib.linux-armv7l-cpython-311/skbio/binaries/_util.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries 2026-09-21T21:46:59,863 creating build/bdist.linux-armv7l/wheel/skbio/binaries/tests 2026-09-21T21:46:59,864 copying build/lib.linux-armv7l-cpython-311/skbio/binaries/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries/tests 2026-09-21T21:46:59,865 copying build/lib.linux-armv7l-cpython-311/skbio/binaries/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries/tests 2026-09-21T21:46:59,867 copying build/lib.linux-armv7l-cpython-311/skbio/binaries/_ordination.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries 2026-09-21T21:46:59,869 copying build/lib.linux-armv7l-cpython-311/skbio/binaries/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries 2026-09-21T21:46:59,871 copying build/lib.linux-armv7l-cpython-311/skbio/binaries/_distance.py -> build/bdist.linux-armv7l/wheel/./skbio/binaries 2026-09-21T21:46:59,874 creating build/bdist.linux-armv7l/wheel/skbio/tests 2026-09-21T21:46:59,875 copying build/lib.linux-armv7l-cpython-311/skbio/tests/test_workflow.py -> build/bdist.linux-armv7l/wheel/./skbio/tests 2026-09-21T21:46:59,877 copying build/lib.linux-armv7l-cpython-311/skbio/tests/test_config.py -> build/bdist.linux-armv7l/wheel/./skbio/tests 2026-09-21T21:46:59,879 copying build/lib.linux-armv7l-cpython-311/skbio/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/tests 2026-09-21T21:46:59,881 copying build/lib.linux-armv7l-cpython-311/skbio/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/tests 2026-09-21T21:46:59,883 copying build/lib.linux-armv7l-cpython-311/skbio/test.py -> build/bdist.linux-armv7l/wheel/./skbio 2026-09-21T21:46:59,886 creating build/bdist.linux-armv7l/wheel/skbio/tree 2026-09-21T21:46:59,887 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.c -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:46:59,909 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:46:59,943 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:46:59,946 creating build/bdist.linux-armv7l/wheel/skbio/tree/tests 2026-09-21T21:46:59,948 creating build/bdist.linux-armv7l/wheel/skbio/tree/tests/data 2026-09-21T21:46:59,949 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.upgma.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data 2026-09-21T21:46:59,951 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.nj.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data 2026-09-21T21:46:59,953 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.bme.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data 2026-09-21T21:46:59,955 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.gme.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data 2026-09-21T21:46:59,956 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.phy -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data 2026-09-21T21:46:59,959 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.gme.nni.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data 2026-09-21T21:46:59,961 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/data/mp100.bme.nni.nwk -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests/data 2026-09-21T21:46:59,963 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_tree.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2026-09-21T21:46:59,968 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_compare.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2026-09-21T21:46:59,971 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2026-09-21T21:46:59,972 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_nj.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2026-09-21T21:46:59,975 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_majority_rule.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2026-09-21T21:46:59,977 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2026-09-21T21:46:59,979 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_upgma.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2026-09-21T21:46:59,981 copying build/lib.linux-armv7l-cpython-311/skbio/tree/tests/test_me.py -> build/bdist.linux-armv7l/wheel/./skbio/tree/tests 2026-09-21T21:46:59,985 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_majority_rule.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:46:59,987 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_nj.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:46:59,989 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_compare.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:46:59,992 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_me.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:46:59,995 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.pyx -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:46:59,997 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_exception.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:46:59,999 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.pyx -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:47:00,003 copying build/lib.linux-armv7l-cpython-311/skbio/tree/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:47:00,005 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_upgma.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:47:00,007 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_tree.py -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:47:00,013 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_me.c -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:47:00,064 copying build/lib.linux-armv7l-cpython-311/skbio/tree/_c_nj.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/tree 2026-09-21T21:47:00,081 creating build/bdist.linux-armv7l/wheel/skbio/diversity 2026-09-21T21:47:00,081 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.c -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2026-09-21T21:47:00,094 creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha 2026-09-21T21:47:00,095 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_ace.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2026-09-21T21:47:00,097 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2026-09-21T21:47:00,100 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_lladser.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2026-09-21T21:47:00,104 creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha/tests 2026-09-21T21:47:00,105 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_gini.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2026-09-21T21:47:00,107 creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha/tests/data 2026-09-21T21:47:00,109 creating build/bdist.linux-armv7l/wheel/skbio/diversity/alpha/tests/data/qiime-191-tt 2026-09-21T21:47:00,110 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt 2026-09-21T21:47:00,112 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt 2026-09-21T21:47:00,113 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/README.md -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt 2026-09-21T21:47:00,115 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests/data/qiime-191-tt 2026-09-21T21:47:00,117 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_pd.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2026-09-21T21:47:00,119 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_ace.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2026-09-21T21:47:00,121 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2026-09-21T21:47:00,122 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_chao1.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2026-09-21T21:47:00,124 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2026-09-21T21:47:00,127 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/tests/test_lladser.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha/tests 2026-09-21T21:47:00,129 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_chao1.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2026-09-21T21:47:00,131 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_pd.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2026-09-21T21:47:00,133 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2026-09-21T21:47:00,135 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/alpha/_gini.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/alpha 2026-09-21T21:47:00,137 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_util.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2026-09-21T21:47:00,140 creating build/bdist.linux-armv7l/wheel/skbio/diversity/tests 2026-09-21T21:47:00,141 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests 2026-09-21T21:47:00,143 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/test_driver.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests 2026-09-21T21:47:00,146 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests 2026-09-21T21:47:00,148 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/tests/test_block.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/tests 2026-09-21T21:47:00,150 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2026-09-21T21:47:00,152 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_driver.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2026-09-21T21:47:00,155 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_block.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2026-09-21T21:47:00,158 creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta 2026-09-21T21:47:00,159 creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta/tests 2026-09-21T21:47:00,161 creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta/tests/data 2026-09-21T21:47:00,163 creating build/bdist.linux-armv7l/wheel/skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:47:00,164 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:47:00,166 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:47:00,167 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:47:00,169 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:47:00,171 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/README.md -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:47:00,172 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests/data/qiime-191-tt 2026-09-21T21:47:00,174 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests 2026-09-21T21:47:00,176 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/tests/test_unifrac.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta/tests 2026-09-21T21:47:00,178 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta 2026-09-21T21:47:00,180 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/beta/_unifrac.py -> build/bdist.linux-armv7l/wheel/./skbio/diversity/beta 2026-09-21T21:47:00,183 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.pyx -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2026-09-21T21:47:00,185 copying build/lib.linux-armv7l-cpython-311/skbio/diversity/_phylogenetic.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/diversity 2026-09-21T21:47:00,193 creating build/bdist.linux-armv7l/wheel/skbio/util 2026-09-21T21:47:00,194 copying build/lib.linux-armv7l-cpython-311/skbio/util/_docstring.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,198 creating build/bdist.linux-armv7l/wheel/skbio/util/tests 2026-09-21T21:47:00,199 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2026-09-21T21:47:00,202 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_warning.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2026-09-21T21:47:00,204 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2026-09-21T21:47:00,206 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_plotting.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2026-09-21T21:47:00,208 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_testing.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2026-09-21T21:47:00,211 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_decorator.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2026-09-21T21:47:00,214 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_docstring.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2026-09-21T21:47:00,217 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_array.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2026-09-21T21:47:00,220 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_optionals.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2026-09-21T21:47:00,222 copying build/lib.linux-armv7l-cpython-311/skbio/util/tests/test_random.py -> build/bdist.linux-armv7l/wheel/./skbio/util/tests 2026-09-21T21:47:00,224 copying build/lib.linux-armv7l-cpython-311/skbio/util/_warning.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,226 copying build/lib.linux-armv7l-cpython-311/skbio/util/_random.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,228 copying build/lib.linux-armv7l-cpython-311/skbio/util/_array.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,231 copying build/lib.linux-armv7l-cpython-311/skbio/util/_plotting.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,233 copying build/lib.linux-armv7l-cpython-311/skbio/util/_typing.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,236 copying build/lib.linux-armv7l-cpython-311/skbio/util/_exception.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,238 copying build/lib.linux-armv7l-cpython-311/skbio/util/_decorator.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,240 copying build/lib.linux-armv7l-cpython-311/skbio/util/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,242 copying build/lib.linux-armv7l-cpython-311/skbio/util/_optionals.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,244 copying build/lib.linux-armv7l-cpython-311/skbio/util/_gpu.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,246 copying build/lib.linux-armv7l-cpython-311/skbio/util/_testing.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,249 copying build/lib.linux-armv7l-cpython-311/skbio/util/_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/util 2026-09-21T21:47:00,252 creating build/bdist.linux-armv7l/wheel/skbio/io 2026-09-21T21:47:00,253 copying build/lib.linux-armv7l-cpython-311/skbio/io/descriptors.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2026-09-21T21:47:00,257 creating build/bdist.linux-armv7l/wheel/skbio/io/tests 2026-09-21T21:47:00,258 creating build/bdist.linux-armv7l/wheel/skbio/io/tests/data 2026-09-21T21:47:00,260 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/big5_file.gz -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2026-09-21T21:47:00,262 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/big5_file -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2026-09-21T21:47:00,264 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/example_file.gz -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2026-09-21T21:47:00,266 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/big5_file.bz2 -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2026-09-21T21:47:00,268 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/example_file -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2026-09-21T21:47:00,270 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/example_file.bz2 -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2026-09-21T21:47:00,272 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/real_file_2 -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2026-09-21T21:47:00,274 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/data/real_file -> build/bdist.linux-armv7l/wheel/./skbio/io/tests/data 2026-09-21T21:47:00,277 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_registry.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests 2026-09-21T21:47:00,280 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_format_imports.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests 2026-09-21T21:47:00,283 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests 2026-09-21T21:47:00,286 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_iosources.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests 2026-09-21T21:47:00,288 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests 2026-09-21T21:47:00,290 copying build/lib.linux-armv7l-cpython-311/skbio/io/tests/test_descriptors.py -> build/bdist.linux-armv7l/wheel/./skbio/io/tests 2026-09-21T21:47:00,294 creating build/bdist.linux-armv7l/wheel/skbio/io/format 2026-09-21T21:47:00,295 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/phylip.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:00,298 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/lsmat.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:00,301 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/qseq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:00,303 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/genbank.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:00,306 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:00,309 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/embl.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:00,312 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/phylip_dm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:00,315 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/gff3.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:00,318 creating build/bdist.linux-armv7l/wheel/skbio/io/format/tests 2026-09-21T21:47:00,319 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_ordination.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:00,322 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_phylip.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:00,332 creating build/bdist.linux-armv7l/wheel/skbio/io/format/tests/data 2026-09-21T21:47:00,333 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_custom_single_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,335 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_multi_seq_spaces -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,338 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,340 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,342 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_feature_level_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,345 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_ws_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,347 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_gf_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,349 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_single_record_simple -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,352 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_blank_lines_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,354 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_dna_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,356 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_custom_mixed_nans -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,359 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,361 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,363 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_blank_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,365 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error19 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,367 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_for_sniffer_2 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,370 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,372 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,374 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_missing_locus_name -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,376 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_bio_seq_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,378 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multiple_msa -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,381 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_dna_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,383 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,385 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,388 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,390 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multi_line_tree_no_id -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,392 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_valid_sq.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,395 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,397 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/tiny_embedding_file.npz -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,459 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_single_seq_long -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,461 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_header_too_long -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,463 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_rna -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,465 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_no_data -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,467 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_rna_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,468 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_x -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,470 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,472 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_gc_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,474 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/prot_vec.emb -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,477 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_sq_invalid_empty_line_before_header.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,478 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_blank_lines -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,480 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_double_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,482 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/whitespace_only -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,484 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_two_chunks -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,486 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_multi_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,487 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_wrong_number_dists_lt.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,490 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,492 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/empty -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,493 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_valid_lt.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,495 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,497 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_whitespace_in_header_3 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,499 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error23 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,501 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_long_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,503 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_spaces.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,504 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_empty_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,506 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error4 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,509 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_single_seq_short -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,510 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,512 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/taxdump_names.dmp -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,514 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_missing_seq_data -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,516 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_differing_seq_lengths -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,517 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_seq_sanger -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,519 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_description_newline_replacement_empty_str -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,521 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,523 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_feature_level_record_no_FT -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,525 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,527 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embed2.txt.npy -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,537 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_rna_seq_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,539 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,541 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_too_few_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,543 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_uniprot_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,545 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error21 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,547 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_prot_seqs_odd_labels -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,548 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_too_many_columns.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,550 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_zero_seq_len -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,552 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_whitespace_only_lines -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,554 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_single_seq_illumina1.8 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,556 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,558 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error2 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,560 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_duplicate_gc -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,562 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_data_only -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,564 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_vtab.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,566 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_invalid_data_type -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,568 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_duplicate_tree_ids -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,570 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_multi_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,571 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-comments.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,573 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_too_many_columns -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,575 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_5_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,577 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,579 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_sq_invalid_empty_line_after_header.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,581 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_missing_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,583 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,585 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_blank_lines_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,587 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_short_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,589 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_minimal -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,591 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_gibberish -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,593 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_differing_gc_data_length -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,594 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults_extra -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,596 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_10_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,598 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,601 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_single_seq_relaxed -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,602 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_within_qual -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,604 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_single_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,606 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_max_width_1 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,608 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,609 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error14 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,611 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_references -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,613 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_description_newline_replacement_none -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,615 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_single_record_lower -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,617 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error6 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,619 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_differing_gr_data_length -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,621 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error17 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,623 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/gff3_bad_wrong_columns -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,625 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-comments-comment-char-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,627 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_tab.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,629 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_at_seq.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,631 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_duplicate_gr -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,632 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,634 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/prot.emb -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,641 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_no_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,643 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,645 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dna_3_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,647 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_default_single_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,649 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_dna_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,651 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_multi_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,654 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error20 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,656 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,659 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_single_record_lower -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,661 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_max_width_5 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,663 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_no_dists.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,665 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_single_seq_sanger -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,668 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,670 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,672 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_id_whitespace_replacement_none -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,674 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,676 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error5 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,679 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,681 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_whitespace_in_header_1 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,683 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error1 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,686 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_single_reference -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,688 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,690 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error16 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,693 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_prot_seqs_odd_labels -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,695 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-comments-mixed-case.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,698 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error10 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,700 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_zero_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,702 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_blank_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,704 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_for_sniffer -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,707 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error11 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,709 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error18 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,711 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multiple_references -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,714 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_tabular_msa_different_type -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,716 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_duplicate_sequence_names -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,718 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_dna_seq_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,720 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error13 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,722 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,724 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,726 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_invalid_number_of_columns -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,728 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_blank_line_within_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,730 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_rna_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,732 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_in_seq.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,734 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,736 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_prot_seq_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,738 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_invalid_too_many_columns -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,740 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_too_few_columns_sq.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,742 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_bio_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,744 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error12 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,746 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_ws_lines_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,748 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_5_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,750 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,752 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/wrapping_original_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,754 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,756 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_single_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,758 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_ws_lines_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,760 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_6_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,762 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,764 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,766 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/longreads_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,768 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_single_record_upper -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,770 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_custom_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,772 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_seq_too_long -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,774 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_extensive -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,776 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/longreads_original_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,779 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_custom_mixed_nans -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,781 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_3_seqs_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,783 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_zero_header.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,785 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_5_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,787 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_and_blast7_default -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,789 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_legacy_format -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,790 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_missing_footer -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,792 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,794 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,796 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multi_line_tree_with_id -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,798 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/tsv_10_fields -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,800 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_ws_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,801 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_escape.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,803 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_seq_too_short -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,805 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_constructed -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,807 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_prot_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,809 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/taxdump_nodes.dmp -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,811 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,813 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,815 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_blank_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,817 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_rna_original_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,819 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/gff3_bad_missing_directive -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,821 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_at_plus.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,823 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,825 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_after_plus -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,827 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,828 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_filter -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,830 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_no_data -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,832 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multiple_multi_line_trees -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,834 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_custom_single_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,835 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_6_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,837 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-empty-rows.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,839 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/gff3_multi_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,841 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_whitespace_stripping -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,842 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_blank_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,844 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_good_simple_strict_square_reader.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,846 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,848 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,850 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_y -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,852 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_legacy_format -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,853 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error9 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,855 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_whitespace_in_header_2 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,857 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_empty_line_after_header.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,859 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_6_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,861 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error24 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,862 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,864 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,866 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-complete-types-directive.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,868 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_default_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,870 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_double_seq.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,872 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_multi_seq_illumina1.3 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,873 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_nonstring_labels -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,875 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/wrapping_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,877 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,879 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_mixed_qual_scores -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,881 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_invalid_type_in_column -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,883 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,884 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_multi_seq_roundtrip -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,886 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_references_mixed -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,888 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_space.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,890 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,892 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_missing_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,893 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,895 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_single_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,897 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_in_plus.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,899 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_two_of_each_metadata -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,901 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_no_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,903 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_blank_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,905 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_default_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,907 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,909 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,911 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_simple_lt.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,913 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_custom_minimal -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,915 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_w_beginning_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,917 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_multi_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,919 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,921 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_single_seq_illumina1.3 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,922 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_blanks_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,924 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_diff_ids.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,926 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_single_tree_with_id -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,928 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,930 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_blank_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,931 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_metadata_only -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,933 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_description_newline_replacement_none -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,935 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,937 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_custom_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,938 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_empty_line_before_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,940 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_differing_fields -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,942 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_L&L_CA_data_scores -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,944 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,946 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_example2_scores -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,947 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_lane -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,949 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embed1.txt.npy -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,955 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_data_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,957 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/gff3_single_record -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,959 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/pdb_hits.txt -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,961 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error15 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,963 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_single_tree_without_id -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,965 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,967 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_multi_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,969 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_example3_scores -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,971 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_max_width_1 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,973 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_ws_lines_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,975 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,978 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,980 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_multi_seq_roundtrip -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,982 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error22 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,984 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_too_few_rows.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,986 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,988 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_5_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,990 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_2_seqs_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,992 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,994 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_blank_lines -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,997 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_max_width_5 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:00,999 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_simple_sq.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,001 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_del.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,003 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_5_blanks_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,005 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_null.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,007 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_writer_sanger_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,009 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace-split-id.tsv -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,011 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_whitespace_only_lines -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,013 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error7 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,015 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_qual_scores_negative -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,017 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/misc_dna_original_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,019 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_invalid_unrecognized_field -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,021 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,024 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_multi_blank_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,026 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_ws_lines_between_records -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,028 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_different_padding -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,030 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_in_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,032 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_invalid_differing_fields -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,034 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_tabs.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,036 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/tsv_8_fields -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,038 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_within_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,041 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_qual_scores_string -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,043 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_multiple_trees -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,045 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_id_whitespace_replacement_none -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,047 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_invalid_column_types -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,049 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_qual_unit_sep.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,051 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/longreads_as_illumina.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,053 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_extensive_mixed -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,055 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_tabular_msa_different_type -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,057 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_writer_sanger_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,059 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,062 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_too_many_rows.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,064 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_6_ws_lines_start_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,066 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_missing_rn_tag -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,068 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_in_title.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,071 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_too_many_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,073 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_read -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,075 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,077 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_variable_length_ids -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,079 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_after_seq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,082 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_empty_line_before_header.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,084 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_after_10_seqs -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,086 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast7_default_single_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,088 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_all_data_types -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,090 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error3 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,093 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/embl_single_record_upper -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,095 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/legacy9_mixed_nans -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,097 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,099 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/wrapping_as_sanger.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,101 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_good_simple_strict_square.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,103 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_header_too_long.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,106 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_gs_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,108 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_invalid_header_too_short -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,110 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_qual_scores_float -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,112 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_description_newline_replacement_multi_char -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,114 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_missing_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,116 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qseq_invalid_tile -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,118 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/error_trunc_at_qual.fastq -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,120 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_qual_scores_over_255 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,122 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_invalid_missing_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,124 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_3_seqs_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,126 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/blast6_custom_minimal -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,128 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_malformed_gr_line -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,130 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_single_rna_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,132 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/ordination_error8 -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,135 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,137 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/phylip_dm_invalid_no_header.dist -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,140 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/gff3_dna -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,143 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/stockholm_missing_reference_items -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,146 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/genbank_w_beginning_whitespace -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,149 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/qual_ws_lines_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,152 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,155 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_blanks_end_of_file -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,157 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests/data 2026-09-21T21:47:01,160 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_phylip_dm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,164 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_embl.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,168 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_sequence_feature_vocabulary.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,172 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_biom.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,175 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_fastq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,179 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_binary_dm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,183 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_lsmat.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,187 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_blast6.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,190 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_genbank.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,194 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,197 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_fasta.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,203 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_clustal.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,207 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_gff3.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,211 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_stockholm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,217 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_blast7.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,221 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_taxdump.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,225 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,228 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_qseq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,233 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_sample_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,236 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_embed.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,239 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_emptyfile.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,241 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/tests/test_newick.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format/tests 2026-09-21T21:47:01,244 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/emptyfile.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,246 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/_blast.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,248 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/clustal.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,251 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/newick.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,254 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/_sequence_feature_vocabulary.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,257 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/stockholm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,260 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,262 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/embed.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,265 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/taxdump.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,268 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/ordination.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,271 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/biom.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,274 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/binary_dm.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,276 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/sample_metadata.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,279 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/blast6.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,282 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/fasta.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,286 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/fastq.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,289 copying build/lib.linux-armv7l-cpython-311/skbio/io/format/blast7.py -> build/bdist.linux-armv7l/wheel/./skbio/io/format 2026-09-21T21:47:01,292 copying build/lib.linux-armv7l-cpython-311/skbio/io/_warning.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2026-09-21T21:47:01,294 copying build/lib.linux-armv7l-cpython-311/skbio/io/util.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2026-09-21T21:47:01,297 copying build/lib.linux-armv7l-cpython-311/skbio/io/_exception.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2026-09-21T21:47:01,299 copying build/lib.linux-armv7l-cpython-311/skbio/io/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2026-09-21T21:47:01,302 copying build/lib.linux-armv7l-cpython-311/skbio/io/registry.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2026-09-21T21:47:01,305 copying build/lib.linux-armv7l-cpython-311/skbio/io/_iosources.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2026-09-21T21:47:01,307 copying build/lib.linux-armv7l-cpython-311/skbio/io/_fileobject.py -> build/bdist.linux-armv7l/wheel/./skbio/io 2026-09-21T21:47:01,309 copying build/lib.linux-armv7l-cpython-311/skbio/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio 2026-09-21T21:47:01,311 creating build/bdist.linux-armv7l/wheel/skbio/stats 2026-09-21T21:47:01,313 creating build/bdist.linux-armv7l/wheel/skbio/stats/tests 2026-09-21T21:47:01,315 creating build/bdist.linux-armv7l/wheel/skbio/stats/tests/data 2026-09-21T21:47:01,316 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_data_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,318 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_real_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,319 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,321 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_wo_msg_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,323 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_data_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,325 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_real_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,326 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_wo_msg_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,328 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_no_data_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,330 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/vr_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,331 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_w_msg_raw -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,333 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/gr_w_msg_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,335 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/data/cr_no_data_out -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests/data 2026-09-21T21:47:01,337 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2026-09-21T21:47:01,338 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_subsample.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2026-09-21T21:47:01,341 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2026-09-21T21:47:01,343 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_gradient.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2026-09-21T21:47:01,346 copying build/lib.linux-armv7l-cpython-311/skbio/stats/tests/test_power.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/tests 2026-09-21T21:47:01,349 copying build/lib.linux-armv7l-cpython-311/skbio/stats/power.py -> build/bdist.linux-armv7l/wheel/./skbio/stats 2026-09-21T21:47:01,352 copying build/lib.linux-armv7l-cpython-311/skbio/stats/_subsample.py -> build/bdist.linux-armv7l/wheel/./skbio/stats 2026-09-21T21:47:01,354 copying build/lib.linux-armv7l-cpython-311/skbio/stats/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats 2026-09-21T21:47:01,357 creating build/bdist.linux-armv7l/wheel/skbio/stats/evolve 2026-09-21T21:47:01,358 copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/_hommola.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve 2026-09-21T21:47:01,361 creating build/bdist.linux-armv7l/wheel/skbio/stats/evolve/tests 2026-09-21T21:47:01,362 copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve/tests 2026-09-21T21:47:01,364 copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/tests/test_hommola.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve/tests 2026-09-21T21:47:01,366 copying build/lib.linux-armv7l-cpython-311/skbio/stats/evolve/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/evolve 2026-09-21T21:47:01,368 creating build/bdist.linux-armv7l/wheel/skbio/stats/composition 2026-09-21T21:47:01,369 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition 2026-09-21T21:47:01,372 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition 2026-09-21T21:47:01,375 creating build/bdist.linux-armv7l/wheel/skbio/stats/composition/tests 2026-09-21T21:47:01,376 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/test_ancom.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests 2026-09-21T21:47:01,380 creating build/bdist.linux-armv7l/wheel/skbio/stats/composition/tests/data 2026-09-21T21:47:01,381 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/atlas_ancombc2_pair.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data 2026-09-21T21:47:01,383 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/atlas_ancombc2_trend.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data 2026-09-21T21:47:01,385 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/atlas_ancombc2_global.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data 2026-09-21T21:47:01,387 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/atlas_feature_table.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data 2026-09-21T21:47:01,389 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/atlas_ancombc2_dunn.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data 2026-09-21T21:47:01,391 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/atlas_ancombc_global.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data 2026-09-21T21:47:01,393 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/atlas_ancombc2_main.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data 2026-09-21T21:47:01,395 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/atlas_ancombc_main.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data 2026-09-21T21:47:01,398 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/data/atlas_meta_data.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests/data 2026-09-21T21:47:01,400 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/test_ancombc.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests 2026-09-21T21:47:01,403 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests 2026-09-21T21:47:01,405 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/test_dirmult.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests 2026-09-21T21:47:01,408 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests 2026-09-21T21:47:01,412 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition/tests 2026-09-21T21:47:01,414 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/_ancom.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition 2026-09-21T21:47:01,417 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition 2026-09-21T21:47:01,419 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/_ancombc.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition 2026-09-21T21:47:01,424 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/_lme.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition 2026-09-21T21:47:01,426 copying build/lib.linux-armv7l-cpython-311/skbio/stats/composition/_dirmult.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/composition 2026-09-21T21:47:01,429 copying build/lib.linux-armv7l-cpython-311/skbio/stats/gradient.py -> build/bdist.linux-armv7l/wheel/./skbio/stats 2026-09-21T21:47:01,432 creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination 2026-09-21T21:47:01,433 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,436 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_mmvec.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,440 creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination/tests 2026-09-21T21:47:01,442 creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination/tests/data 2026-09-21T21:47:01,444 creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination/tests/data/cf 2026-09-21T21:47:01,445 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf/microbe_meta.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/cf 2026-09-21T21:47:01,447 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf/metabolite_meta.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/cf 2026-09-21T21:47:01,449 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf/metabolites.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/cf 2026-09-21T21:47:01,451 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf/README.md -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/cf 2026-09-21T21:47:01,453 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/cf/microbes.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/cf 2026-09-21T21:47:01,455 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_biplot_descriptors -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,456 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,458 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/varechem.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,460 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_X -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,462 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,464 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_3 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,466 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_biplot_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,468 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_12dim -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,470 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,471 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,473 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,475 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,477 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,479 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,481 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,482 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,484 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/varespec.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,486 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,488 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_biplot_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,490 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_biplot_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,491 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_Y -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,493 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,495 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,497 creating build/bdist.linux-armv7l/wheel/skbio/stats/ordination/tests/data/soils 2026-09-21T21:47:01,498 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils/microbes.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/soils 2026-09-21T21:47:01,502 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils/metabolites.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/soils 2026-09-21T21:47:01,503 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils/metabolites.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/soils 2026-09-21T21:47:01,506 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils/README.md -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/soils 2026-09-21T21:47:01,508 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/soils/microbes.tsv.sha256 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data/soils 2026-09-21T21:47:01,509 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,511 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/exp_PCoAzeros_site -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,513 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_biplot_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,515 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,517 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,518 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,520 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_sample_data_2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,522 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/L&L_CA_data -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,523 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_X -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,525 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,527 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_Y -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,529 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,530 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,532 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,534 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1 -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,536 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,538 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/data/PCoA_skbio -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests/data 2026-09-21T21:47:01,539 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2026-09-21T21:47:01,542 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_principal_coordinate_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2026-09-21T21:47:01,544 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_mmvec.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2026-09-21T21:47:01,547 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_ordination_results.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2026-09-21T21:47:01,550 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2026-09-21T21:47:01,552 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_principal_component_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2026-09-21T21:47:01,554 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2026-09-21T21:47:01,556 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_redundancy_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2026-09-21T21:47:01,558 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/tests/test_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination/tests 2026-09-21T21:47:01,561 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.c -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,584 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,603 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_center_distance_matrix_numba.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,604 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_principal_coordinate_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,607 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_principal_component_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,610 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,612 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_redundancy_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,614 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_cutils.pyx -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,616 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,618 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_ordination_results.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,621 copying build/lib.linux-armv7l-cpython-311/skbio/stats/ordination/_canonical_correspondence_analysis.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/ordination 2026-09-21T21:47:01,624 creating build/bdist.linux-armv7l/wheel/skbio/stats/distance 2026-09-21T21:47:01,625 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_permanova.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,628 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_base.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,631 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,634 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_permdisp.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,637 creating build/bdist.linux-armv7l/wheel/skbio/stats/distance/tests 2026-09-21T21:47:01,638 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_bioenv.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2026-09-21T21:47:01,642 creating build/bdist.linux-armv7l/wheel/skbio/stats/distance/tests/data 2026-09-21T21:47:01,643 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/bioenv_df_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,645 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/exp_results_different_column_order.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,646 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/bioenv_exp_results_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,648 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm3.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,649 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/bioenv_dm_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,652 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_dm_dm2.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,653 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/df.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,655 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_duplicate_dms.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,657 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,658 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm_reordered.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,660 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,662 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_minimal_with_labels.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,664 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm2.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,665 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/frameSeries_dm.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,668 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,670 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/exp_results_single_column.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,672 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_reordered_distance_matrices.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,674 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/frameSeries_grouping.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,676 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/exp_results.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,678 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_na_p_value.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,679 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/moving_pictures_mf.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,681 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,683 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/moving_pictures_dm.tsv -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,685 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/dm4.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,687 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,689 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/data/df_extra_column.txt -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests/data 2026-09-21T21:47:01,690 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_mantel.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2026-09-21T21:47:01,693 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2026-09-21T21:47:01,695 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_permanova.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2026-09-21T21:47:01,698 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2026-09-21T21:47:01,700 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_permdisp.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2026-09-21T21:47:01,703 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_base.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2026-09-21T21:47:01,707 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/tests/test_anosim.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance/tests 2026-09-21T21:47:01,709 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.c -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,737 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,763 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_bioenv.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,765 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,767 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_mantel_gpu.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,770 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_gpu.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,772 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_mantel.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,775 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_cutils.pyx -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,777 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_anosim.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,780 copying build/lib.linux-armv7l-cpython-311/skbio/stats/distance/_permanova_gpu.py -> build/bdist.linux-armv7l/wheel/./skbio/stats/distance 2026-09-21T21:47:01,782 copying build/lib.linux-armv7l-cpython-311/skbio/stats/_misc.py -> build/bdist.linux-armv7l/wheel/./skbio/stats 2026-09-21T21:47:01,784 creating build/bdist.linux-armv7l/wheel/skbio/alignment 2026-09-21T21:47:01,785 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_tabular_msa.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,788 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,792 creating build/bdist.linux-armv7l/wheel/skbio/alignment/tests 2026-09-21T21:47:01,793 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_pair.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2026-09-21T21:47:01,797 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_path.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2026-09-21T21:47:01,800 creating build/bdist.linux-armv7l/wheel/skbio/alignment/tests/data 2026-09-21T21:47:01,801 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/16s.frn -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data 2026-09-21T21:47:01,803 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/il6.prot.aln -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data 2026-09-21T21:47:01,805 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/tp53.prot.aln -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data 2026-09-21T21:47:01,806 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/il6.nucl.aln -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data 2026-09-21T21:47:01,809 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/insulin.faa -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data 2026-09-21T21:47:01,811 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/data/tp53.nucl.aln -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests/data 2026-09-21T21:47:01,813 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_score.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2026-09-21T21:47:01,815 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2026-09-21T21:47:01,817 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_multi.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2026-09-21T21:47:01,819 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2026-09-21T21:47:01,822 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_distance.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2026-09-21T21:47:01,825 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_pairwise.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2026-09-21T21:47:01,827 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/tests/test_tabular_msa.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment/tests 2026-09-21T21:47:01,832 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.c -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,857 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,879 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,882 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_indexing.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,884 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_pairwise.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,887 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_distance.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,889 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_score.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,891 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_multi.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,894 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_cutils.pyx -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,896 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_repr.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,898 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_path.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,901 copying build/lib.linux-armv7l-cpython-311/skbio/alignment/_pair.py -> build/bdist.linux-armv7l/wheel/./skbio/alignment 2026-09-21T21:47:01,905 creating build/bdist.linux-armv7l/wheel/skbio/embedding 2026-09-21T21:47:01,906 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/_embedding.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding 2026-09-21T21:47:01,909 creating build/bdist.linux-armv7l/wheel/skbio/embedding/tests 2026-09-21T21:47:01,910 creating build/bdist.linux-armv7l/wheel/skbio/embedding/tests/data 2026-09-21T21:47:01,911 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/data/embed1.txt.npy -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests/data 2026-09-21T21:47:01,918 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/test_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests 2026-09-21T21:47:01,920 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/test_embedding.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests 2026-09-21T21:47:01,922 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding/tests 2026-09-21T21:47:01,924 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding 2026-09-21T21:47:01,926 copying build/lib.linux-armv7l-cpython-311/skbio/embedding/_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/embedding 2026-09-21T21:47:01,928 copying build/lib.linux-armv7l-cpython-311/skbio/_config.py -> build/bdist.linux-armv7l/wheel/./skbio 2026-09-21T21:47:01,931 creating build/bdist.linux-armv7l/wheel/skbio/sequence 2026-09-21T21:47:01,932 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_genetic_code.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:01,935 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_substitution.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:01,937 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/distance.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:01,941 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_alphabet.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:01,944 creating build/bdist.linux-armv7l/wheel/skbio/sequence/tests 2026-09-21T21:47:01,945 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,948 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_genetic_code.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,951 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_substitution.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,954 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,960 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_transition.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,963 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_dna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,965 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_nucleotide_sequences.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,968 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,971 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_grammared_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,974 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_alphabet.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,977 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_distance.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,980 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/tests/test_rna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence/tests 2026-09-21T21:47:01,983 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_grammared_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:01,986 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:01,989 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/transition.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:01,992 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_sequence.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:01,997 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_dna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:02,000 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_repr.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:02,002 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_protein.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:02,005 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_rna.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:02,008 copying build/lib.linux-armv7l-cpython-311/skbio/sequence/_nucleotide_mixin.py -> build/bdist.linux-armv7l/wheel/./skbio/sequence 2026-09-21T21:47:02,011 copying build/lib.linux-armv7l-cpython-311/skbio/workflow.py -> build/bdist.linux-armv7l/wheel/./skbio 2026-09-21T21:47:02,015 running install_egg_info 2026-09-21T21:47:02,023 Copying scikit_bio.egg-info to build/bdist.linux-armv7l/wheel/./scikit_bio-0.7.4-py3.11.egg-info 2026-09-21T21:47:02,038 running install_scripts 2026-09-21T21:47:02,062 creating build/bdist.linux-armv7l/wheel/scikit_bio-0.7.4.dist-info/WHEEL 2026-09-21T21:47:02,065 creating '/tmp/pip-wheel-groe8ys9/.tmp-mjafuh8a/scikit_bio-0.7.4-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-09-21T21:47:02,068 adding 'scikit_bio-0.7.4.dist-info/licenses/LICENSE.txt' 2026-09-21T21:47:02,071 adding 'skbio/__init__.py' 2026-09-21T21:47:02,072 adding 'skbio/_base.py' 2026-09-21T21:47:02,074 adding 'skbio/_config.py' 2026-09-21T21:47:02,075 adding 'skbio/test.py' 2026-09-21T21:47:02,078 adding 'skbio/workflow.py' 2026-09-21T21:47:02,081 adding 'skbio/alignment/__init__.py' 2026-09-21T21:47:02,199 adding 'skbio/alignment/_cutils.c' 2026-09-21T21:47:02,480 adding 'skbio/alignment/_cutils.cpython-311-arm-linux-gnueabihf.so' 2026-09-21T21:47:02,490 adding 'skbio/alignment/_cutils.pyx' 2026-09-21T21:47:02,492 adding 'skbio/alignment/_distance.py' 2026-09-21T21:47:02,494 adding 'skbio/alignment/_indexing.py' 2026-09-21T21:47:02,498 adding 'skbio/alignment/_multi.py' 2026-09-21T21:47:02,504 adding 'skbio/alignment/_pair.py' 2026-09-21T21:47:02,508 adding 'skbio/alignment/_pairwise.py' 2026-09-21T21:47:02,513 adding 'skbio/alignment/_path.py' 2026-09-21T21:47:02,515 adding 'skbio/alignment/_repr.py' 2026-09-21T21:47:02,516 adding 'skbio/alignment/_score.py' 2026-09-21T21:47:02,525 adding 'skbio/alignment/_tabular_msa.py' 2026-09-21T21:47:02,528 adding 'skbio/alignment/_utils.py' 2026-09-21T21:47:02,530 adding 'skbio/alignment/tests/__init__.py' 2026-09-21T21:47:02,533 adding 'skbio/alignment/tests/test_distance.py' 2026-09-21T21:47:02,536 adding 'skbio/alignment/tests/test_multi.py' 2026-09-21T21:47:02,542 adding 'skbio/alignment/tests/test_pair.py' 2026-09-21T21:47:02,545 adding 'skbio/alignment/tests/test_pairwise.py' 2026-09-21T21:47:02,549 adding 'skbio/alignment/tests/test_path.py' 2026-09-21T21:47:02,550 adding 'skbio/alignment/tests/test_score.py' 2026-09-21T21:47:02,561 adding 'skbio/alignment/tests/test_tabular_msa.py' 2026-09-21T21:47:02,564 adding 'skbio/alignment/tests/test_utils.py' 2026-09-21T21:47:02,566 adding 'skbio/alignment/tests/data/16s.frn' 2026-09-21T21:47:02,568 adding 'skbio/alignment/tests/data/il6.nucl.aln' 2026-09-21T21:47:02,569 adding 'skbio/alignment/tests/data/il6.prot.aln' 2026-09-21T21:47:02,571 adding 'skbio/alignment/tests/data/insulin.faa' 2026-09-21T21:47:02,573 adding 'skbio/alignment/tests/data/tp53.nucl.aln' 2026-09-21T21:47:02,574 adding 'skbio/alignment/tests/data/tp53.prot.aln' 2026-09-21T21:47:02,576 adding 'skbio/binaries/__init__.py' 2026-09-21T21:47:02,577 adding 'skbio/binaries/_distance.py' 2026-09-21T21:47:02,579 adding 'skbio/binaries/_ordination.py' 2026-09-21T21:47:02,581 adding 'skbio/binaries/_util.py' 2026-09-21T21:47:02,582 adding 'skbio/binaries/tests/__init__.py' 2026-09-21T21:47:02,584 adding 'skbio/binaries/tests/test_util.py' 2026-09-21T21:47:02,587 adding 'skbio/diversity/__init__.py' 2026-09-21T21:47:02,589 adding 'skbio/diversity/_block.py' 2026-09-21T21:47:02,592 adding 'skbio/diversity/_driver.py' 2026-09-21T21:47:02,642 adding 'skbio/diversity/_phylogenetic.c' 2026-09-21T21:47:02,726 adding 'skbio/diversity/_phylogenetic.cpython-311-arm-linux-gnueabihf.so' 2026-09-21T21:47:02,730 adding 'skbio/diversity/_phylogenetic.pyx' 2026-09-21T21:47:02,732 adding 'skbio/diversity/_util.py' 2026-09-21T21:47:02,734 adding 'skbio/diversity/alpha/__init__.py' 2026-09-21T21:47:02,736 adding 'skbio/diversity/alpha/_ace.py' 2026-09-21T21:47:02,740 adding 'skbio/diversity/alpha/_base.py' 2026-09-21T21:47:02,742 adding 'skbio/diversity/alpha/_chao1.py' 2026-09-21T21:47:02,744 adding 'skbio/diversity/alpha/_gini.py' 2026-09-21T21:47:02,746 adding 'skbio/diversity/alpha/_lladser.py' 2026-09-21T21:47:02,749 adding 'skbio/diversity/alpha/_pd.py' 2026-09-21T21:47:02,750 adding 'skbio/diversity/alpha/tests/__init__.py' 2026-09-21T21:47:02,752 adding 'skbio/diversity/alpha/tests/test_ace.py' 2026-09-21T21:47:02,754 adding 'skbio/diversity/alpha/tests/test_base.py' 2026-09-21T21:47:02,755 adding 'skbio/diversity/alpha/tests/test_chao1.py' 2026-09-21T21:47:02,757 adding 'skbio/diversity/alpha/tests/test_gini.py' 2026-09-21T21:47:02,758 adding 'skbio/diversity/alpha/tests/test_lladser.py' 2026-09-21T21:47:02,761 adding 'skbio/diversity/alpha/tests/test_pd.py' 2026-09-21T21:47:02,763 adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/README.md' 2026-09-21T21:47:02,764 adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/faith-pd.txt' 2026-09-21T21:47:02,765 adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/otu-table.tsv' 2026-09-21T21:47:02,766 adding 'skbio/diversity/alpha/tests/data/qiime-191-tt/tree.nwk' 2026-09-21T21:47:02,768 adding 'skbio/diversity/beta/__init__.py' 2026-09-21T21:47:02,772 adding 'skbio/diversity/beta/_unifrac.py' 2026-09-21T21:47:02,774 adding 'skbio/diversity/beta/tests/__init__.py' 2026-09-21T21:47:02,777 adding 'skbio/diversity/beta/tests/test_unifrac.py' 2026-09-21T21:47:02,780 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/README.md' 2026-09-21T21:47:02,781 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/otu-table.tsv' 2026-09-21T21:47:02,782 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/tree.nwk' 2026-09-21T21:47:02,783 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/unweighted_unifrac_dm.txt' 2026-09-21T21:47:02,784 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/weighted_normalized_unifrac_dm.txt' 2026-09-21T21:47:02,786 adding 'skbio/diversity/beta/tests/data/qiime-191-tt/weighted_unifrac_dm.txt' 2026-09-21T21:47:02,787 adding 'skbio/diversity/tests/__init__.py' 2026-09-21T21:47:02,789 adding 'skbio/diversity/tests/test_block.py' 2026-09-21T21:47:02,792 adding 'skbio/diversity/tests/test_driver.py' 2026-09-21T21:47:02,794 adding 'skbio/diversity/tests/test_util.py' 2026-09-21T21:47:02,796 adding 'skbio/embedding/__init__.py' 2026-09-21T21:47:02,798 adding 'skbio/embedding/_embedding.py' 2026-09-21T21:47:02,799 adding 'skbio/embedding/_protein.py' 2026-09-21T21:47:02,801 adding 'skbio/embedding/tests/__init__.py' 2026-09-21T21:47:02,802 adding 'skbio/embedding/tests/test_embedding.py' 2026-09-21T21:47:02,804 adding 'skbio/embedding/tests/test_protein.py' 2026-09-21T21:47:02,842 adding 'skbio/embedding/tests/data/embed1.txt.npy' 2026-09-21T21:47:02,846 adding 'skbio/io/__init__.py' 2026-09-21T21:47:02,847 adding 'skbio/io/_exception.py' 2026-09-21T21:47:02,848 adding 'skbio/io/_fileobject.py' 2026-09-21T21:47:02,850 adding 'skbio/io/_iosources.py' 2026-09-21T21:47:02,851 adding 'skbio/io/_warning.py' 2026-09-21T21:47:02,853 adding 'skbio/io/descriptors.py' 2026-09-21T21:47:02,857 adding 'skbio/io/registry.py' 2026-09-21T21:47:02,859 adding 'skbio/io/util.py' 2026-09-21T21:47:02,862 adding 'skbio/io/format/__init__.py' 2026-09-21T21:47:02,863 adding 'skbio/io/format/_base.py' 2026-09-21T21:47:02,865 adding 'skbio/io/format/_blast.py' 2026-09-21T21:47:02,867 adding 'skbio/io/format/_sequence_feature_vocabulary.py' 2026-09-21T21:47:02,868 adding 'skbio/io/format/binary_dm.py' 2026-09-21T21:47:02,870 adding 'skbio/io/format/biom.py' 2026-09-21T21:47:02,872 adding 'skbio/io/format/blast6.py' 2026-09-21T21:47:02,874 adding 'skbio/io/format/blast7.py' 2026-09-21T21:47:02,876 adding 'skbio/io/format/clustal.py' 2026-09-21T21:47:02,878 adding 'skbio/io/format/embed.py' 2026-09-21T21:47:02,885 adding 'skbio/io/format/embl.py' 2026-09-21T21:47:02,886 adding 'skbio/io/format/emptyfile.py' 2026-09-21T21:47:02,891 adding 'skbio/io/format/fasta.py' 2026-09-21T21:47:02,894 adding 'skbio/io/format/fastq.py' 2026-09-21T21:47:02,897 adding 'skbio/io/format/genbank.py' 2026-09-21T21:47:02,900 adding 'skbio/io/format/gff3.py' 2026-09-21T21:47:02,902 adding 'skbio/io/format/lsmat.py' 2026-09-21T21:47:02,905 adding 'skbio/io/format/newick.py' 2026-09-21T21:47:02,907 adding 'skbio/io/format/ordination.py' 2026-09-21T21:47:02,909 adding 'skbio/io/format/phylip.py' 2026-09-21T21:47:02,912 adding 'skbio/io/format/phylip_dm.py' 2026-09-21T21:47:02,914 adding 'skbio/io/format/qseq.py' 2026-09-21T21:47:02,916 adding 'skbio/io/format/sample_metadata.py' 2026-09-21T21:47:02,920 adding 'skbio/io/format/stockholm.py' 2026-09-21T21:47:02,922 adding 'skbio/io/format/taxdump.py' 2026-09-21T21:47:02,924 adding 'skbio/io/format/tests/__init__.py' 2026-09-21T21:47:02,926 adding 'skbio/io/format/tests/test_base.py' 2026-09-21T21:47:02,927 adding 'skbio/io/format/tests/test_binary_dm.py' 2026-09-21T21:47:02,929 adding 'skbio/io/format/tests/test_biom.py' 2026-09-21T21:47:02,930 adding 'skbio/io/format/tests/test_blast6.py' 2026-09-21T21:47:02,932 adding 'skbio/io/format/tests/test_blast7.py' 2026-09-21T21:47:02,934 adding 'skbio/io/format/tests/test_clustal.py' 2026-09-21T21:47:02,935 adding 'skbio/io/format/tests/test_embed.py' 2026-09-21T21:47:02,939 adding 'skbio/io/format/tests/test_embl.py' 2026-09-21T21:47:02,940 adding 'skbio/io/format/tests/test_emptyfile.py' 2026-09-21T21:47:02,945 adding 'skbio/io/format/tests/test_fasta.py' 2026-09-21T21:47:02,947 adding 'skbio/io/format/tests/test_fastq.py' 2026-09-21T21:47:02,950 adding 'skbio/io/format/tests/test_genbank.py' 2026-09-21T21:47:02,952 adding 'skbio/io/format/tests/test_gff3.py' 2026-09-21T21:47:02,953 adding 'skbio/io/format/tests/test_lsmat.py' 2026-09-21T21:47:02,955 adding 'skbio/io/format/tests/test_newick.py' 2026-09-21T21:47:02,957 adding 'skbio/io/format/tests/test_ordination.py' 2026-09-21T21:47:02,959 adding 'skbio/io/format/tests/test_phylip.py' 2026-09-21T21:47:02,961 adding 'skbio/io/format/tests/test_phylip_dm.py' 2026-09-21T21:47:02,963 adding 'skbio/io/format/tests/test_qseq.py' 2026-09-21T21:47:02,964 adding 'skbio/io/format/tests/test_sample_metadata.py' 2026-09-21T21:47:02,965 adding 'skbio/io/format/tests/test_sequence_feature_vocabulary.py' 2026-09-21T21:47:02,968 adding 'skbio/io/format/tests/test_stockholm.py' 2026-09-21T21:47:02,970 adding 'skbio/io/format/tests/test_taxdump.py' 2026-09-21T21:47:02,978 adding 'skbio/io/format/tests/data/blast6_custom_minimal' 2026-09-21T21:47:02,979 adding 'skbio/io/format/tests/data/blast6_custom_mixed_nans' 2026-09-21T21:47:02,980 adding 'skbio/io/format/tests/data/blast6_custom_multi_line' 2026-09-21T21:47:02,981 adding 'skbio/io/format/tests/data/blast6_custom_single_line' 2026-09-21T21:47:02,983 adding 'skbio/io/format/tests/data/blast6_default_multi_line' 2026-09-21T21:47:02,984 adding 'skbio/io/format/tests/data/blast6_default_single_line' 2026-09-21T21:47:02,985 adding 'skbio/io/format/tests/data/blast6_invalid_column_types' 2026-09-21T21:47:02,986 adding 'skbio/io/format/tests/data/blast6_invalid_number_of_columns' 2026-09-21T21:47:02,987 adding 'skbio/io/format/tests/data/blast6_invalid_type_in_column' 2026-09-21T21:47:02,988 adding 'skbio/io/format/tests/data/blast7_custom_minimal' 2026-09-21T21:47:02,989 adding 'skbio/io/format/tests/data/blast7_custom_mixed_nans' 2026-09-21T21:47:02,991 adding 'skbio/io/format/tests/data/blast7_custom_multi_line' 2026-09-21T21:47:02,992 adding 'skbio/io/format/tests/data/blast7_custom_single_line' 2026-09-21T21:47:02,993 adding 'skbio/io/format/tests/data/blast7_default_multi_line' 2026-09-21T21:47:02,994 adding 'skbio/io/format/tests/data/blast7_default_single_line' 2026-09-21T21:47:02,995 adding 'skbio/io/format/tests/data/blast7_invalid_differing_fields' 2026-09-21T21:47:02,996 adding 'skbio/io/format/tests/data/blast7_invalid_for_sniffer' 2026-09-21T21:47:02,998 adding 'skbio/io/format/tests/data/blast7_invalid_for_sniffer_2' 2026-09-21T21:47:02,999 adding 'skbio/io/format/tests/data/blast7_invalid_gibberish' 2026-09-21T21:47:03,000 adding 'skbio/io/format/tests/data/blast7_invalid_no_data' 2026-09-21T21:47:03,001 adding 'skbio/io/format/tests/data/blast7_invalid_too_many_columns' 2026-09-21T21:47:03,002 adding 'skbio/io/format/tests/data/blast7_invalid_unrecognized_field' 2026-09-21T21:47:03,040 adding 'skbio/io/format/tests/data/embed1.txt.npy' 2026-09-21T21:47:03,078 adding 'skbio/io/format/tests/data/embed2.txt.npy' 2026-09-21T21:47:03,081 adding 'skbio/io/format/tests/data/embl_constructed' 2026-09-21T21:47:03,082 adding 'skbio/io/format/tests/data/embl_feature_level_record' 2026-09-21T21:47:03,084 adding 'skbio/io/format/tests/data/embl_feature_level_record_no_FT' 2026-09-21T21:47:03,086 adding 'skbio/io/format/tests/data/embl_multi_records' 2026-09-21T21:47:03,087 adding 'skbio/io/format/tests/data/embl_single_record' 2026-09-21T21:47:03,088 adding 'skbio/io/format/tests/data/embl_single_record_lower' 2026-09-21T21:47:03,090 adding 'skbio/io/format/tests/data/embl_single_record_simple' 2026-09-21T21:47:03,091 adding 'skbio/io/format/tests/data/embl_single_record_upper' 2026-09-21T21:47:03,092 adding 'skbio/io/format/tests/data/embl_uniprot_record' 2026-09-21T21:47:03,093 adding 'skbio/io/format/tests/data/embl_w_beginning_whitespace' 2026-09-21T21:47:03,095 adding 'skbio/io/format/tests/data/empty' 2026-09-21T21:47:03,096 adding 'skbio/io/format/tests/data/error_diff_ids.fastq' 2026-09-21T21:47:03,097 adding 'skbio/io/format/tests/data/error_double_qual.fastq' 2026-09-21T21:47:03,098 adding 'skbio/io/format/tests/data/error_double_seq.fastq' 2026-09-21T21:47:03,100 adding 'skbio/io/format/tests/data/error_long_qual.fastq' 2026-09-21T21:47:03,101 adding 'skbio/io/format/tests/data/error_no_qual.fastq' 2026-09-21T21:47:03,102 adding 'skbio/io/format/tests/data/error_qual_del.fastq' 2026-09-21T21:47:03,103 adding 'skbio/io/format/tests/data/error_qual_escape.fastq' 2026-09-21T21:47:03,104 adding 'skbio/io/format/tests/data/error_qual_null.fastq' 2026-09-21T21:47:03,105 adding 'skbio/io/format/tests/data/error_qual_space.fastq' 2026-09-21T21:47:03,106 adding 'skbio/io/format/tests/data/error_qual_tab.fastq' 2026-09-21T21:47:03,108 adding 'skbio/io/format/tests/data/error_qual_unit_sep.fastq' 2026-09-21T21:47:03,109 adding 'skbio/io/format/tests/data/error_qual_vtab.fastq' 2026-09-21T21:47:03,110 adding 'skbio/io/format/tests/data/error_short_qual.fastq' 2026-09-21T21:47:03,111 adding 'skbio/io/format/tests/data/error_spaces.fastq' 2026-09-21T21:47:03,113 adding 'skbio/io/format/tests/data/error_tabs.fastq' 2026-09-21T21:47:03,114 adding 'skbio/io/format/tests/data/error_trunc_at_plus.fastq' 2026-09-21T21:47:03,115 adding 'skbio/io/format/tests/data/error_trunc_at_qual.fastq' 2026-09-21T21:47:03,116 adding 'skbio/io/format/tests/data/error_trunc_at_seq.fastq' 2026-09-21T21:47:03,117 adding 'skbio/io/format/tests/data/error_trunc_in_plus.fastq' 2026-09-21T21:47:03,119 adding 'skbio/io/format/tests/data/error_trunc_in_qual.fastq' 2026-09-21T21:47:03,120 adding 'skbio/io/format/tests/data/error_trunc_in_seq.fastq' 2026-09-21T21:47:03,121 adding 'skbio/io/format/tests/data/error_trunc_in_title.fastq' 2026-09-21T21:47:03,122 adding 'skbio/io/format/tests/data/fasta_10_seqs' 2026-09-21T21:47:03,123 adding 'skbio/io/format/tests/data/fasta_3_seqs_defaults' 2026-09-21T21:47:03,125 adding 'skbio/io/format/tests/data/fasta_3_seqs_non_defaults' 2026-09-21T21:47:03,126 adding 'skbio/io/format/tests/data/fasta_5_blanks_start_of_file' 2026-09-21T21:47:03,127 adding 'skbio/io/format/tests/data/fasta_5_ws_lines_start_of_file' 2026-09-21T21:47:03,128 adding 'skbio/io/format/tests/data/fasta_6_blanks_start_of_file' 2026-09-21T21:47:03,129 adding 'skbio/io/format/tests/data/fasta_6_ws_lines_start_of_file' 2026-09-21T21:47:03,130 adding 'skbio/io/format/tests/data/fasta_blank_lines_between_records' 2026-09-21T21:47:03,132 adding 'skbio/io/format/tests/data/fasta_blanks_end_of_file' 2026-09-21T21:47:03,133 adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_empty_str' 2026-09-21T21:47:03,134 adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_multi_char' 2026-09-21T21:47:03,135 adding 'skbio/io/format/tests/data/fasta_description_newline_replacement_none' 2026-09-21T21:47:03,136 adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_empty_str' 2026-09-21T21:47:03,137 adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_multi_char' 2026-09-21T21:47:03,139 adding 'skbio/io/format/tests/data/fasta_id_whitespace_replacement_none' 2026-09-21T21:47:03,140 adding 'skbio/io/format/tests/data/fasta_invalid_after_10_seqs' 2026-09-21T21:47:03,141 adding 'skbio/io/format/tests/data/fasta_invalid_blank_line_after_header' 2026-09-21T21:47:03,142 adding 'skbio/io/format/tests/data/fasta_invalid_blank_line_within_sequence' 2026-09-21T21:47:03,143 adding 'skbio/io/format/tests/data/fasta_invalid_blank_sequence' 2026-09-21T21:47:03,144 adding 'skbio/io/format/tests/data/fasta_invalid_legacy_format' 2026-09-21T21:47:03,146 adding 'skbio/io/format/tests/data/fasta_invalid_missing_header' 2026-09-21T21:47:03,147 adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_first' 2026-09-21T21:47:03,148 adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_last' 2026-09-21T21:47:03,149 adding 'skbio/io/format/tests/data/fasta_invalid_missing_seq_data_middle' 2026-09-21T21:47:03,150 adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_line_after_header' 2026-09-21T21:47:03,152 adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_only_line_within_sequence' 2026-09-21T21:47:03,153 adding 'skbio/io/format/tests/data/fasta_invalid_whitespace_only_sequence' 2026-09-21T21:47:03,154 adding 'skbio/io/format/tests/data/fasta_max_width_1' 2026-09-21T21:47:03,155 adding 'skbio/io/format/tests/data/fasta_max_width_5' 2026-09-21T21:47:03,156 adding 'skbio/io/format/tests/data/fasta_mixed_qual_scores' 2026-09-21T21:47:03,157 adding 'skbio/io/format/tests/data/fasta_multi_seq' 2026-09-21T21:47:03,158 adding 'skbio/io/format/tests/data/fasta_multi_seq_roundtrip' 2026-09-21T21:47:03,159 adding 'skbio/io/format/tests/data/fasta_multi_seq_spaces' 2026-09-21T21:47:03,160 adding 'skbio/io/format/tests/data/fasta_prot_seqs_odd_labels' 2026-09-21T21:47:03,162 adding 'skbio/io/format/tests/data/fasta_single_bio_seq_defaults' 2026-09-21T21:47:03,163 adding 'skbio/io/format/tests/data/fasta_single_bio_seq_non_defaults' 2026-09-21T21:47:03,164 adding 'skbio/io/format/tests/data/fasta_single_dna_seq_defaults' 2026-09-21T21:47:03,165 adding 'skbio/io/format/tests/data/fasta_single_dna_seq_non_defaults' 2026-09-21T21:47:03,166 adding 'skbio/io/format/tests/data/fasta_single_prot_seq_defaults' 2026-09-21T21:47:03,167 adding 'skbio/io/format/tests/data/fasta_single_prot_seq_non_defaults' 2026-09-21T21:47:03,168 adding 'skbio/io/format/tests/data/fasta_single_rna_seq_defaults' 2026-09-21T21:47:03,170 adding 'skbio/io/format/tests/data/fasta_single_rna_seq_non_defaults' 2026-09-21T21:47:03,171 adding 'skbio/io/format/tests/data/fasta_single_seq' 2026-09-21T21:47:03,172 adding 'skbio/io/format/tests/data/fasta_tabular_msa_different_type' 2026-09-21T21:47:03,173 adding 'skbio/io/format/tests/data/fasta_ws_lines_between_records' 2026-09-21T21:47:03,174 adding 'skbio/io/format/tests/data/fasta_ws_lines_end_of_file' 2026-09-21T21:47:03,176 adding 'skbio/io/format/tests/data/fastq_5_blanks_start_of_file' 2026-09-21T21:47:03,177 adding 'skbio/io/format/tests/data/fastq_5_ws_lines_start_of_file' 2026-09-21T21:47:03,178 adding 'skbio/io/format/tests/data/fastq_blank_lines' 2026-09-21T21:47:03,179 adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_header' 2026-09-21T21:47:03,181 adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_plus' 2026-09-21T21:47:03,182 adding 'skbio/io/format/tests/data/fastq_invalid_blank_after_seq' 2026-09-21T21:47:03,183 adding 'skbio/io/format/tests/data/fastq_invalid_blank_in_seq_at_symbol' 2026-09-21T21:47:03,184 adding 'skbio/io/format/tests/data/fastq_invalid_blank_within_qual' 2026-09-21T21:47:03,185 adding 'skbio/io/format/tests/data/fastq_invalid_blank_within_seq' 2026-09-21T21:47:03,186 adding 'skbio/io/format/tests/data/fastq_invalid_missing_header' 2026-09-21T21:47:03,188 adding 'skbio/io/format/tests/data/fastq_invalid_missing_seq_data' 2026-09-21T21:47:03,189 adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_header' 2026-09-21T21:47:03,190 adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_plus' 2026-09-21T21:47:03,191 adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_after_seq' 2026-09-21T21:47:03,193 adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_within_qual' 2026-09-21T21:47:03,194 adding 'skbio/io/format/tests/data/fastq_invalid_ws_line_within_seq' 2026-09-21T21:47:03,195 adding 'skbio/io/format/tests/data/fastq_multi_blank_between_records' 2026-09-21T21:47:03,197 adding 'skbio/io/format/tests/data/fastq_multi_blank_end_of_file' 2026-09-21T21:47:03,198 adding 'skbio/io/format/tests/data/fastq_multi_blank_start_of_file' 2026-09-21T21:47:03,199 adding 'skbio/io/format/tests/data/fastq_multi_seq_sanger' 2026-09-21T21:47:03,200 adding 'skbio/io/format/tests/data/fastq_multi_whitespace_stripping' 2026-09-21T21:47:03,202 adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_between_records' 2026-09-21T21:47:03,203 adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_end_of_file' 2026-09-21T21:47:03,204 adding 'skbio/io/format/tests/data/fastq_multi_ws_lines_start_of_file' 2026-09-21T21:47:03,205 adding 'skbio/io/format/tests/data/fastq_single_seq_illumina1.3' 2026-09-21T21:47:03,206 adding 'skbio/io/format/tests/data/fastq_single_seq_illumina1.8' 2026-09-21T21:47:03,207 adding 'skbio/io/format/tests/data/fastq_whitespace_only_lines' 2026-09-21T21:47:03,209 adding 'skbio/io/format/tests/data/fastq_wrapping_as_illumina_no_description' 2026-09-21T21:47:03,210 adding 'skbio/io/format/tests/data/fastq_wrapping_as_sanger_no_description' 2026-09-21T21:47:03,211 adding 'skbio/io/format/tests/data/fastq_wrapping_original_sanger_no_description' 2026-09-21T21:47:03,212 adding 'skbio/io/format/tests/data/fastq_writer_illumina1.3_defaults' 2026-09-21T21:47:03,213 adding 'skbio/io/format/tests/data/fastq_writer_sanger_defaults' 2026-09-21T21:47:03,214 adding 'skbio/io/format/tests/data/fastq_writer_sanger_non_defaults' 2026-09-21T21:47:03,215 adding 'skbio/io/format/tests/data/genbank_5_blanks_start_of_file' 2026-09-21T21:47:03,217 adding 'skbio/io/format/tests/data/genbank_6_blanks_start_of_file' 2026-09-21T21:47:03,218 adding 'skbio/io/format/tests/data/genbank_missing_locus_name' 2026-09-21T21:47:03,219 adding 'skbio/io/format/tests/data/genbank_multi_records' 2026-09-21T21:47:03,220 adding 'skbio/io/format/tests/data/genbank_single_record' 2026-09-21T21:47:03,222 adding 'skbio/io/format/tests/data/genbank_single_record_lower' 2026-09-21T21:47:03,223 adding 'skbio/io/format/tests/data/genbank_single_record_upper' 2026-09-21T21:47:03,224 adding 'skbio/io/format/tests/data/genbank_w_beginning_whitespace' 2026-09-21T21:47:03,225 adding 'skbio/io/format/tests/data/gff3_bad_missing_directive' 2026-09-21T21:47:03,226 adding 'skbio/io/format/tests/data/gff3_bad_wrong_columns' 2026-09-21T21:47:03,227 adding 'skbio/io/format/tests/data/gff3_dna' 2026-09-21T21:47:03,228 adding 'skbio/io/format/tests/data/gff3_multi_record' 2026-09-21T21:47:03,230 adding 'skbio/io/format/tests/data/gff3_single_record' 2026-09-21T21:47:03,231 adding 'skbio/io/format/tests/data/illumina_full_range_as_illumina.fastq' 2026-09-21T21:47:03,232 adding 'skbio/io/format/tests/data/illumina_full_range_as_sanger.fastq' 2026-09-21T21:47:03,233 adding 'skbio/io/format/tests/data/illumina_full_range_original_illumina.fastq' 2026-09-21T21:47:03,234 adding 'skbio/io/format/tests/data/legacy9_and_blast7_default' 2026-09-21T21:47:03,236 adding 'skbio/io/format/tests/data/legacy9_invalid_differing_fields' 2026-09-21T21:47:03,237 adding 'skbio/io/format/tests/data/legacy9_invalid_too_many_columns' 2026-09-21T21:47:03,238 adding 'skbio/io/format/tests/data/legacy9_mixed_nans' 2026-09-21T21:47:03,239 adding 'skbio/io/format/tests/data/legacy9_multi_line' 2026-09-21T21:47:03,240 adding 'skbio/io/format/tests/data/legacy9_single_line' 2026-09-21T21:47:03,243 adding 'skbio/io/format/tests/data/longreads_as_illumina.fastq' 2026-09-21T21:47:03,245 adding 'skbio/io/format/tests/data/longreads_as_sanger.fastq' 2026-09-21T21:47:03,247 adding 'skbio/io/format/tests/data/longreads_original_sanger.fastq' 2026-09-21T21:47:03,248 adding 'skbio/io/format/tests/data/misc_dna_as_illumina.fastq' 2026-09-21T21:47:03,250 adding 'skbio/io/format/tests/data/misc_dna_as_sanger.fastq' 2026-09-21T21:47:03,251 adding 'skbio/io/format/tests/data/misc_dna_original_sanger.fastq' 2026-09-21T21:47:03,252 adding 'skbio/io/format/tests/data/misc_rna_as_illumina.fastq' 2026-09-21T21:47:03,253 adding 'skbio/io/format/tests/data/misc_rna_as_sanger.fastq' 2026-09-21T21:47:03,255 adding 'skbio/io/format/tests/data/misc_rna_original_sanger.fastq' 2026-09-21T21:47:03,256 adding 'skbio/io/format/tests/data/ordination_L&L_CA_data_scores' 2026-09-21T21:47:03,257 adding 'skbio/io/format/tests/data/ordination_PCoA_sample_data_3_scores' 2026-09-21T21:47:03,259 adding 'skbio/io/format/tests/data/ordination_error1' 2026-09-21T21:47:03,260 adding 'skbio/io/format/tests/data/ordination_error10' 2026-09-21T21:47:03,262 adding 'skbio/io/format/tests/data/ordination_error11' 2026-09-21T21:47:03,263 adding 'skbio/io/format/tests/data/ordination_error12' 2026-09-21T21:47:03,265 adding 'skbio/io/format/tests/data/ordination_error13' 2026-09-21T21:47:03,266 adding 'skbio/io/format/tests/data/ordination_error14' 2026-09-21T21:47:03,267 adding 'skbio/io/format/tests/data/ordination_error15' 2026-09-21T21:47:03,268 adding 'skbio/io/format/tests/data/ordination_error16' 2026-09-21T21:47:03,270 adding 'skbio/io/format/tests/data/ordination_error17' 2026-09-21T21:47:03,271 adding 'skbio/io/format/tests/data/ordination_error18' 2026-09-21T21:47:03,272 adding 'skbio/io/format/tests/data/ordination_error19' 2026-09-21T21:47:03,273 adding 'skbio/io/format/tests/data/ordination_error2' 2026-09-21T21:47:03,275 adding 'skbio/io/format/tests/data/ordination_error20' 2026-09-21T21:47:03,276 adding 'skbio/io/format/tests/data/ordination_error21' 2026-09-21T21:47:03,277 adding 'skbio/io/format/tests/data/ordination_error22' 2026-09-21T21:47:03,278 adding 'skbio/io/format/tests/data/ordination_error23' 2026-09-21T21:47:03,279 adding 'skbio/io/format/tests/data/ordination_error24' 2026-09-21T21:47:03,281 adding 'skbio/io/format/tests/data/ordination_error3' 2026-09-21T21:47:03,282 adding 'skbio/io/format/tests/data/ordination_error4' 2026-09-21T21:47:03,283 adding 'skbio/io/format/tests/data/ordination_error5' 2026-09-21T21:47:03,285 adding 'skbio/io/format/tests/data/ordination_error6' 2026-09-21T21:47:03,286 adding 'skbio/io/format/tests/data/ordination_error7' 2026-09-21T21:47:03,287 adding 'skbio/io/format/tests/data/ordination_error8' 2026-09-21T21:47:03,288 adding 'skbio/io/format/tests/data/ordination_error9' 2026-09-21T21:47:03,290 adding 'skbio/io/format/tests/data/ordination_example2_scores' 2026-09-21T21:47:03,291 adding 'skbio/io/format/tests/data/ordination_example3_scores' 2026-09-21T21:47:03,293 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site' 2026-09-21T21:47:03,294 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_site_constraints' 2026-09-21T21:47:03,295 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_CCA_species' 2026-09-21T21:47:03,297 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_PCoA_site' 2026-09-21T21:47:03,298 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site' 2026-09-21T21:47:03,299 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_site_constraints' 2026-09-21T21:47:03,301 adding 'skbio/io/format/tests/data/ordination_exp_Ordination_RDA_species' 2026-09-21T21:47:03,302 adding 'skbio/io/format/tests/data/pdb_hits.txt' 2026-09-21T21:47:03,303 adding 'skbio/io/format/tests/data/phylip_dm_good_simple_strict_square.dist' 2026-09-21T21:47:03,304 adding 'skbio/io/format/tests/data/phylip_dm_good_simple_strict_square_reader.dist' 2026-09-21T21:47:03,306 adding 'skbio/io/format/tests/data/phylip_dm_invalid_empty_line_after_header.dist' 2026-09-21T21:47:03,307 adding 'skbio/io/format/tests/data/phylip_dm_invalid_empty_line_before_header.dist' 2026-09-21T21:47:03,308 adding 'skbio/io/format/tests/data/phylip_dm_invalid_header_too_long.dist' 2026-09-21T21:47:03,309 adding 'skbio/io/format/tests/data/phylip_dm_invalid_no_dists.dist' 2026-09-21T21:47:03,311 adding 'skbio/io/format/tests/data/phylip_dm_invalid_no_header.dist' 2026-09-21T21:47:03,312 adding 'skbio/io/format/tests/data/phylip_dm_invalid_too_few_columns_sq.dist' 2026-09-21T21:47:03,313 adding 'skbio/io/format/tests/data/phylip_dm_invalid_too_few_rows.dist' 2026-09-21T21:47:03,314 adding 'skbio/io/format/tests/data/phylip_dm_invalid_too_many_columns.dist' 2026-09-21T21:47:03,315 adding 'skbio/io/format/tests/data/phylip_dm_invalid_too_many_rows.dist' 2026-09-21T21:47:03,316 adding 'skbio/io/format/tests/data/phylip_dm_invalid_wrong_number_dists_lt.dist' 2026-09-21T21:47:03,318 adding 'skbio/io/format/tests/data/phylip_dm_invalid_zero_header.dist' 2026-09-21T21:47:03,319 adding 'skbio/io/format/tests/data/phylip_dm_simple_lt.dist' 2026-09-21T21:47:03,320 adding 'skbio/io/format/tests/data/phylip_dm_simple_sq.dist' 2026-09-21T21:47:03,321 adding 'skbio/io/format/tests/data/phylip_dm_sq_invalid_empty_line_after_header.dist' 2026-09-21T21:47:03,322 adding 'skbio/io/format/tests/data/phylip_dm_sq_invalid_empty_line_before_header.dist' 2026-09-21T21:47:03,323 adding 'skbio/io/format/tests/data/phylip_dm_valid_lt.dist' 2026-09-21T21:47:03,324 adding 'skbio/io/format/tests/data/phylip_dm_valid_sq.dist' 2026-09-21T21:47:03,325 adding 'skbio/io/format/tests/data/phylip_dna_3_seqs' 2026-09-21T21:47:03,326 adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_after_header' 2026-09-21T21:47:03,327 adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_before_header' 2026-09-21T21:47:03,328 adding 'skbio/io/format/tests/data/phylip_invalid_empty_line_between_seqs' 2026-09-21T21:47:03,329 adding 'skbio/io/format/tests/data/phylip_invalid_header_too_long' 2026-09-21T21:47:03,331 adding 'skbio/io/format/tests/data/phylip_invalid_header_too_short' 2026-09-21T21:47:03,332 adding 'skbio/io/format/tests/data/phylip_invalid_no_header' 2026-09-21T21:47:03,333 adding 'skbio/io/format/tests/data/phylip_invalid_seq_too_long' 2026-09-21T21:47:03,334 adding 'skbio/io/format/tests/data/phylip_invalid_seq_too_short' 2026-09-21T21:47:03,335 adding 'skbio/io/format/tests/data/phylip_invalid_too_few_seqs' 2026-09-21T21:47:03,336 adding 'skbio/io/format/tests/data/phylip_invalid_too_many_seqs' 2026-09-21T21:47:03,337 adding 'skbio/io/format/tests/data/phylip_invalid_zero_seq_len' 2026-09-21T21:47:03,338 adding 'skbio/io/format/tests/data/phylip_invalid_zero_seqs' 2026-09-21T21:47:03,339 adding 'skbio/io/format/tests/data/phylip_single_seq_long' 2026-09-21T21:47:03,341 adding 'skbio/io/format/tests/data/phylip_single_seq_relaxed' 2026-09-21T21:47:03,342 adding 'skbio/io/format/tests/data/phylip_single_seq_short' 2026-09-21T21:47:03,343 adding 'skbio/io/format/tests/data/phylip_two_chunks' 2026-09-21T21:47:03,344 adding 'skbio/io/format/tests/data/phylip_variable_length_ids' 2026-09-21T21:47:03,345 adding 'skbio/io/format/tests/data/phylip_varied_whitespace_in_seqs' 2026-09-21T21:47:03,346 adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_1' 2026-09-21T21:47:03,347 adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_2' 2026-09-21T21:47:03,348 adding 'skbio/io/format/tests/data/phylip_whitespace_in_header_3' 2026-09-21T21:47:03,386 adding 'skbio/io/format/tests/data/prot.emb' 2026-09-21T21:47:03,390 adding 'skbio/io/format/tests/data/prot_vec.emb' 2026-09-21T21:47:03,391 adding 'skbio/io/format/tests/data/qseq_invalid_filter' 2026-09-21T21:47:03,392 adding 'skbio/io/format/tests/data/qseq_invalid_lane' 2026-09-21T21:47:03,393 adding 'skbio/io/format/tests/data/qseq_invalid_read' 2026-09-21T21:47:03,394 adding 'skbio/io/format/tests/data/qseq_invalid_tile' 2026-09-21T21:47:03,395 adding 'skbio/io/format/tests/data/qseq_invalid_x' 2026-09-21T21:47:03,397 adding 'skbio/io/format/tests/data/qseq_invalid_y' 2026-09-21T21:47:03,398 adding 'skbio/io/format/tests/data/qseq_multi_seq_illumina1.3' 2026-09-21T21:47:03,399 adding 'skbio/io/format/tests/data/qseq_single_seq_sanger' 2026-09-21T21:47:03,400 adding 'skbio/io/format/tests/data/qual_2_seqs_defaults' 2026-09-21T21:47:03,401 adding 'skbio/io/format/tests/data/qual_3_seqs_defaults' 2026-09-21T21:47:03,402 adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_desc_mismatch' 2026-09-21T21:47:03,404 adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_extra' 2026-09-21T21:47:03,405 adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_id_mismatch' 2026-09-21T21:47:03,406 adding 'skbio/io/format/tests/data/qual_3_seqs_defaults_length_mismatch' 2026-09-21T21:47:03,407 adding 'skbio/io/format/tests/data/qual_3_seqs_non_defaults' 2026-09-21T21:47:03,408 adding 'skbio/io/format/tests/data/qual_5_blanks_start_of_file' 2026-09-21T21:47:03,409 adding 'skbio/io/format/tests/data/qual_5_ws_lines_start_of_file' 2026-09-21T21:47:03,411 adding 'skbio/io/format/tests/data/qual_6_blanks_start_of_file' 2026-09-21T21:47:03,412 adding 'skbio/io/format/tests/data/qual_6_ws_lines_start_of_file' 2026-09-21T21:47:03,413 adding 'skbio/io/format/tests/data/qual_blank_lines_between_records' 2026-09-21T21:47:03,414 adding 'skbio/io/format/tests/data/qual_blanks_end_of_file' 2026-09-21T21:47:03,415 adding 'skbio/io/format/tests/data/qual_description_newline_replacement_empty_str' 2026-09-21T21:47:03,416 adding 'skbio/io/format/tests/data/qual_description_newline_replacement_multi_char' 2026-09-21T21:47:03,417 adding 'skbio/io/format/tests/data/qual_description_newline_replacement_none' 2026-09-21T21:47:03,418 adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_empty_str' 2026-09-21T21:47:03,419 adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_multi_char' 2026-09-21T21:47:03,420 adding 'skbio/io/format/tests/data/qual_id_whitespace_replacement_none' 2026-09-21T21:47:03,421 adding 'skbio/io/format/tests/data/qual_invalid_blank_line_after_header' 2026-09-21T21:47:03,422 adding 'skbio/io/format/tests/data/qual_invalid_blank_line_within_seq' 2026-09-21T21:47:03,423 adding 'skbio/io/format/tests/data/qual_invalid_blank_sequence' 2026-09-21T21:47:03,425 adding 'skbio/io/format/tests/data/qual_invalid_legacy_format' 2026-09-21T21:47:03,426 adding 'skbio/io/format/tests/data/qual_invalid_missing_header' 2026-09-21T21:47:03,427 adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_first' 2026-09-21T21:47:03,428 adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_last' 2026-09-21T21:47:03,429 adding 'skbio/io/format/tests/data/qual_invalid_missing_qual_scores_middle' 2026-09-21T21:47:03,430 adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_float' 2026-09-21T21:47:03,431 adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_negative' 2026-09-21T21:47:03,432 adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_over_255' 2026-09-21T21:47:03,433 adding 'skbio/io/format/tests/data/qual_invalid_qual_scores_string' 2026-09-21T21:47:03,434 adding 'skbio/io/format/tests/data/qual_invalid_whitespace_line_in_seq' 2026-09-21T21:47:03,436 adding 'skbio/io/format/tests/data/qual_invalid_whitespace_only_sequence' 2026-09-21T21:47:03,437 adding 'skbio/io/format/tests/data/qual_invalid_ws_line_after_header' 2026-09-21T21:47:03,438 adding 'skbio/io/format/tests/data/qual_max_width_1' 2026-09-21T21:47:03,439 adding 'skbio/io/format/tests/data/qual_max_width_5' 2026-09-21T21:47:03,440 adding 'skbio/io/format/tests/data/qual_multi_seq' 2026-09-21T21:47:03,441 adding 'skbio/io/format/tests/data/qual_multi_seq_roundtrip' 2026-09-21T21:47:03,443 adding 'skbio/io/format/tests/data/qual_prot_seqs_odd_labels' 2026-09-21T21:47:03,444 adding 'skbio/io/format/tests/data/qual_single_bio_seq_non_defaults' 2026-09-21T21:47:03,445 adding 'skbio/io/format/tests/data/qual_single_dna_seq_non_defaults' 2026-09-21T21:47:03,446 adding 'skbio/io/format/tests/data/qual_single_nuc_seq_non_defaults' 2026-09-21T21:47:03,447 adding 'skbio/io/format/tests/data/qual_single_prot_seq_non_defaults' 2026-09-21T21:47:03,448 adding 'skbio/io/format/tests/data/qual_single_rna_seq_non_defaults' 2026-09-21T21:47:03,449 adding 'skbio/io/format/tests/data/qual_single_seq' 2026-09-21T21:47:03,451 adding 'skbio/io/format/tests/data/qual_tabular_msa_different_type' 2026-09-21T21:47:03,452 adding 'skbio/io/format/tests/data/qual_ws_lines_between_records' 2026-09-21T21:47:03,453 adding 'skbio/io/format/tests/data/qual_ws_lines_end_of_file' 2026-09-21T21:47:03,454 adding 'skbio/io/format/tests/data/sample-metadata-comments-comment-char-id.tsv' 2026-09-21T21:47:03,455 adding 'skbio/io/format/tests/data/sample-metadata-comments-mixed-case.tsv' 2026-09-21T21:47:03,457 adding 'skbio/io/format/tests/data/sample-metadata-comments.tsv' 2026-09-21T21:47:03,458 adding 'skbio/io/format/tests/data/sample-metadata-complete-types-directive.tsv' 2026-09-21T21:47:03,459 adding 'skbio/io/format/tests/data/sample-metadata-empty-rows.tsv' 2026-09-21T21:47:03,460 adding 'skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace-split-id.tsv' 2026-09-21T21:47:03,461 adding 'skbio/io/format/tests/data/sample-metadata-leading-trailing-whitespace.tsv' 2026-09-21T21:47:03,462 adding 'skbio/io/format/tests/data/sanger_full_range_as_illumina.fastq' 2026-09-21T21:47:03,463 adding 'skbio/io/format/tests/data/sanger_full_range_as_sanger.fastq' 2026-09-21T21:47:03,464 adding 'skbio/io/format/tests/data/sanger_full_range_original_sanger.fastq' 2026-09-21T21:47:03,466 adding 'skbio/io/format/tests/data/solexa_full_range_original_solexa.fastq' 2026-09-21T21:47:03,467 adding 'skbio/io/format/tests/data/stockholm_all_data_types' 2026-09-21T21:47:03,468 adding 'skbio/io/format/tests/data/stockholm_blank_lines' 2026-09-21T21:47:03,469 adding 'skbio/io/format/tests/data/stockholm_data_only' 2026-09-21T21:47:03,470 adding 'skbio/io/format/tests/data/stockholm_different_padding' 2026-09-21T21:47:03,471 adding 'skbio/io/format/tests/data/stockholm_differing_gc_data_length' 2026-09-21T21:47:03,472 adding 'skbio/io/format/tests/data/stockholm_differing_gr_data_length' 2026-09-21T21:47:03,473 adding 'skbio/io/format/tests/data/stockholm_differing_seq_lengths' 2026-09-21T21:47:03,474 adding 'skbio/io/format/tests/data/stockholm_duplicate_gc' 2026-09-21T21:47:03,475 adding 'skbio/io/format/tests/data/stockholm_duplicate_gr' 2026-09-21T21:47:03,476 adding 'skbio/io/format/tests/data/stockholm_duplicate_sequence_names' 2026-09-21T21:47:03,477 adding 'skbio/io/format/tests/data/stockholm_duplicate_tree_ids' 2026-09-21T21:47:03,479 adding 'skbio/io/format/tests/data/stockholm_extensive' 2026-09-21T21:47:03,480 adding 'skbio/io/format/tests/data/stockholm_extensive_mixed' 2026-09-21T21:47:03,481 adding 'skbio/io/format/tests/data/stockholm_invalid_data_type' 2026-09-21T21:47:03,483 adding 'skbio/io/format/tests/data/stockholm_invalid_nonexistent_gr' 2026-09-21T21:47:03,484 adding 'skbio/io/format/tests/data/stockholm_invalid_nonexistent_gs' 2026-09-21T21:47:03,485 adding 'skbio/io/format/tests/data/stockholm_malformed_data_line' 2026-09-21T21:47:03,486 adding 'skbio/io/format/tests/data/stockholm_malformed_gc_line' 2026-09-21T21:47:03,487 adding 'skbio/io/format/tests/data/stockholm_malformed_gf_line' 2026-09-21T21:47:03,488 adding 'skbio/io/format/tests/data/stockholm_malformed_gr_line' 2026-09-21T21:47:03,489 adding 'skbio/io/format/tests/data/stockholm_malformed_gs_line' 2026-09-21T21:47:03,490 adding 'skbio/io/format/tests/data/stockholm_metadata_only' 2026-09-21T21:47:03,492 adding 'skbio/io/format/tests/data/stockholm_minimal' 2026-09-21T21:47:03,493 adding 'skbio/io/format/tests/data/stockholm_missing_footer' 2026-09-21T21:47:03,494 adding 'skbio/io/format/tests/data/stockholm_missing_header' 2026-09-21T21:47:03,495 adding 'skbio/io/format/tests/data/stockholm_missing_reference_items' 2026-09-21T21:47:03,496 adding 'skbio/io/format/tests/data/stockholm_missing_rn_tag' 2026-09-21T21:47:03,497 adding 'skbio/io/format/tests/data/stockholm_multi_line_tree_no_id' 2026-09-21T21:47:03,498 adding 'skbio/io/format/tests/data/stockholm_multi_line_tree_with_id' 2026-09-21T21:47:03,500 adding 'skbio/io/format/tests/data/stockholm_multiple_msa' 2026-09-21T21:47:03,501 adding 'skbio/io/format/tests/data/stockholm_multiple_multi_line_trees' 2026-09-21T21:47:03,502 adding 'skbio/io/format/tests/data/stockholm_multiple_references' 2026-09-21T21:47:03,503 adding 'skbio/io/format/tests/data/stockholm_multiple_trees' 2026-09-21T21:47:03,504 adding 'skbio/io/format/tests/data/stockholm_no_data' 2026-09-21T21:47:03,505 adding 'skbio/io/format/tests/data/stockholm_nonstring_labels' 2026-09-21T21:47:03,507 adding 'skbio/io/format/tests/data/stockholm_rna' 2026-09-21T21:47:03,508 adding 'skbio/io/format/tests/data/stockholm_runon_gf_no_whitespace' 2026-09-21T21:47:03,509 adding 'skbio/io/format/tests/data/stockholm_runon_gf_with_whitespace' 2026-09-21T21:47:03,510 adding 'skbio/io/format/tests/data/stockholm_runon_gs_no_whitespace' 2026-09-21T21:47:03,511 adding 'skbio/io/format/tests/data/stockholm_runon_gs_with_whitespace' 2026-09-21T21:47:03,512 adding 'skbio/io/format/tests/data/stockholm_runon_references' 2026-09-21T21:47:03,513 adding 'skbio/io/format/tests/data/stockholm_runon_references_mixed' 2026-09-21T21:47:03,514 adding 'skbio/io/format/tests/data/stockholm_single_reference' 2026-09-21T21:47:03,515 adding 'skbio/io/format/tests/data/stockholm_single_tree_with_id' 2026-09-21T21:47:03,516 adding 'skbio/io/format/tests/data/stockholm_single_tree_without_id' 2026-09-21T21:47:03,517 adding 'skbio/io/format/tests/data/stockholm_two_of_each_metadata' 2026-09-21T21:47:03,518 adding 'skbio/io/format/tests/data/stockholm_whitespace_only_lines' 2026-09-21T21:47:03,519 adding 'skbio/io/format/tests/data/taxdump_names.dmp' 2026-09-21T21:47:03,521 adding 'skbio/io/format/tests/data/taxdump_nodes.dmp' 2026-09-21T21:47:03,755 adding 'skbio/io/format/tests/data/tiny_embedding_file.npz' 2026-09-21T21:47:03,770 adding 'skbio/io/format/tests/data/tsv_10_fields' 2026-09-21T21:47:03,771 adding 'skbio/io/format/tests/data/tsv_8_fields' 2026-09-21T21:47:03,772 adding 'skbio/io/format/tests/data/whitespace_only' 2026-09-21T21:47:03,773 adding 'skbio/io/format/tests/data/wrapping_as_illumina.fastq' 2026-09-21T21:47:03,774 adding 'skbio/io/format/tests/data/wrapping_as_sanger.fastq' 2026-09-21T21:47:03,776 adding 'skbio/io/format/tests/data/wrapping_original_sanger.fastq' 2026-09-21T21:47:03,777 adding 'skbio/io/tests/__init__.py' 2026-09-21T21:47:03,780 adding 'skbio/io/tests/test_descriptors.py' 2026-09-21T21:47:03,782 adding 'skbio/io/tests/test_format_imports.py' 2026-09-21T21:47:03,783 adding 'skbio/io/tests/test_iosources.py' 2026-09-21T21:47:03,787 adding 'skbio/io/tests/test_registry.py' 2026-09-21T21:47:03,790 adding 'skbio/io/tests/test_util.py' 2026-09-21T21:47:03,792 adding 'skbio/io/tests/data/big5_file' 2026-09-21T21:47:03,793 adding 'skbio/io/tests/data/big5_file.bz2' 2026-09-21T21:47:03,794 adding 'skbio/io/tests/data/big5_file.gz' 2026-09-21T21:47:03,795 adding 'skbio/io/tests/data/example_file' 2026-09-21T21:47:03,796 adding 'skbio/io/tests/data/example_file.bz2' 2026-09-21T21:47:03,797 adding 'skbio/io/tests/data/example_file.gz' 2026-09-21T21:47:03,799 adding 'skbio/io/tests/data/real_file' 2026-09-21T21:47:03,800 adding 'skbio/io/tests/data/real_file_2' 2026-09-21T21:47:03,802 adding 'skbio/metadata/__init__.py' 2026-09-21T21:47:03,803 adding 'skbio/metadata/_enan.py' 2026-09-21T21:47:03,876 adding 'skbio/metadata/_intersection.c' 2026-09-21T21:47:04,051 adding 'skbio/metadata/_intersection.cpython-311-arm-linux-gnueabihf.so' 2026-09-21T21:47:04,059 adding 'skbio/metadata/_intersection.pyx' 2026-09-21T21:47:04,063 adding 'skbio/metadata/_interval.py' 2026-09-21T21:47:04,069 adding 'skbio/metadata/_metadata.py' 2026-09-21T21:47:04,071 adding 'skbio/metadata/_mixin.py' 2026-09-21T21:47:04,073 adding 'skbio/metadata/_repr.py' 2026-09-21T21:47:04,076 adding 'skbio/metadata/_testing.py' 2026-09-21T21:47:04,078 adding 'skbio/metadata/base.py' 2026-09-21T21:47:04,081 adding 'skbio/metadata/io.py' 2026-09-21T21:47:04,082 adding 'skbio/metadata/missing.py' 2026-09-21T21:47:04,084 adding 'skbio/metadata/tests/__init__.py' 2026-09-21T21:47:04,085 adding 'skbio/metadata/tests/test_enan.py' 2026-09-21T21:47:04,087 adding 'skbio/metadata/tests/test_intersection.py' 2026-09-21T21:47:04,090 adding 'skbio/metadata/tests/test_interval.py' 2026-09-21T21:47:04,094 adding 'skbio/metadata/tests/test_io.py' 2026-09-21T21:47:04,098 adding 'skbio/metadata/tests/test_metadata.py' 2026-09-21T21:47:04,101 adding 'skbio/metadata/tests/test_metadata_column.py' 2026-09-21T21:47:04,102 adding 'skbio/metadata/tests/test_missing.py' 2026-09-21T21:47:04,104 adding 'skbio/metadata/tests/test_mixin.py' 2026-09-21T21:47:04,106 adding 'skbio/metadata/tests/data/invalid/column-name-conflicts-with-id-header.tsv' 2026-09-21T21:47:04,107 adding 'skbio/metadata/tests/data/invalid/comments-and-empty-rows-only.tsv' 2026-09-21T21:47:04,108 adding 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2026-09-21T21:47:04,190 adding 'skbio/sequence/_genetic_code.py' 2026-09-21T21:47:04,193 adding 'skbio/sequence/_grammared_sequence.py' 2026-09-21T21:47:04,195 adding 'skbio/sequence/_nucleotide_mixin.py' 2026-09-21T21:47:04,197 adding 'skbio/sequence/_protein.py' 2026-09-21T21:47:04,198 adding 'skbio/sequence/_repr.py' 2026-09-21T21:47:04,200 adding 'skbio/sequence/_rna.py' 2026-09-21T21:47:04,209 adding 'skbio/sequence/_sequence.py' 2026-09-21T21:47:04,214 adding 'skbio/sequence/_substitution.py' 2026-09-21T21:47:04,221 adding 'skbio/sequence/distance.py' 2026-09-21T21:47:04,224 adding 'skbio/sequence/transition.py' 2026-09-21T21:47:04,226 adding 'skbio/sequence/tests/__init__.py' 2026-09-21T21:47:04,228 adding 'skbio/sequence/tests/test_alphabet.py' 2026-09-21T21:47:04,231 adding 'skbio/sequence/tests/test_distance.py' 2026-09-21T21:47:04,232 adding 'skbio/sequence/tests/test_dna.py' 2026-09-21T21:47:04,235 adding 'skbio/sequence/tests/test_genetic_code.py' 2026-09-21T21:47:04,238 adding 'skbio/sequence/tests/test_grammared_sequence.py' 2026-09-21T21:47:04,241 adding 'skbio/sequence/tests/test_nucleotide_sequences.py' 2026-09-21T21:47:04,242 adding 'skbio/sequence/tests/test_protein.py' 2026-09-21T21:47:04,243 adding 'skbio/sequence/tests/test_rna.py' 2026-09-21T21:47:04,252 adding 'skbio/sequence/tests/test_sequence.py' 2026-09-21T21:47:04,255 adding 'skbio/sequence/tests/test_substitution.py' 2026-09-21T21:47:04,256 adding 'skbio/sequence/tests/test_transition.py' 2026-09-21T21:47:04,258 adding 'skbio/stats/__init__.py' 2026-09-21T21:47:04,260 adding 'skbio/stats/_misc.py' 2026-09-21T21:47:04,262 adding 'skbio/stats/_subsample.py' 2026-09-21T21:47:04,265 adding 'skbio/stats/gradient.py' 2026-09-21T21:47:04,271 adding 'skbio/stats/power.py' 2026-09-21T21:47:04,273 adding 'skbio/stats/composition/__init__.py' 2026-09-21T21:47:04,276 adding 'skbio/stats/composition/_ancom.py' 2026-09-21T21:47:04,297 adding 'skbio/stats/composition/_ancombc.py' 2026-09-21T21:47:04,304 adding 'skbio/stats/composition/_base.py' 2026-09-21T21:47:04,309 adding 'skbio/stats/composition/_dirmult.py' 2026-09-21T21:47:04,312 adding 'skbio/stats/composition/_lme.py' 2026-09-21T21:47:04,314 adding 'skbio/stats/composition/_utils.py' 2026-09-21T21:47:04,316 adding 'skbio/stats/composition/tests/__init__.py' 2026-09-21T21:47:04,318 adding 'skbio/stats/composition/tests/test_ancom.py' 2026-09-21T21:47:04,327 adding 'skbio/stats/composition/tests/test_ancombc.py' 2026-09-21T21:47:04,333 adding 'skbio/stats/composition/tests/test_base.py' 2026-09-21T21:47:04,337 adding 'skbio/stats/composition/tests/test_dirmult.py' 2026-09-21T21:47:04,340 adding 'skbio/stats/composition/tests/test_utils.py' 2026-09-21T21:47:04,342 adding 'skbio/stats/composition/tests/data/atlas_ancombc2_dunn.tsv' 2026-09-21T21:47:04,344 adding 'skbio/stats/composition/tests/data/atlas_ancombc2_global.tsv' 2026-09-21T21:47:04,346 adding 'skbio/stats/composition/tests/data/atlas_ancombc2_main.tsv' 2026-09-21T21:47:04,348 adding 'skbio/stats/composition/tests/data/atlas_ancombc2_pair.tsv' 2026-09-21T21:47:04,349 adding 'skbio/stats/composition/tests/data/atlas_ancombc2_trend.tsv' 2026-09-21T21:47:04,350 adding 'skbio/stats/composition/tests/data/atlas_ancombc_global.tsv' 2026-09-21T21:47:04,352 adding 'skbio/stats/composition/tests/data/atlas_ancombc_main.tsv' 2026-09-21T21:47:04,359 adding 'skbio/stats/composition/tests/data/atlas_feature_table.csv' 2026-09-21T21:47:04,360 adding 'skbio/stats/composition/tests/data/atlas_meta_data.csv' 2026-09-21T21:47:04,362 adding 'skbio/stats/distance/__init__.py' 2026-09-21T21:47:04,364 adding 'skbio/stats/distance/_anosim.py' 2026-09-21T21:47:04,377 adding 'skbio/stats/distance/_base.py' 2026-09-21T21:47:04,379 adding 'skbio/stats/distance/_bioenv.py' 2026-09-21T21:47:04,518 adding 'skbio/stats/distance/_cutils.c' 2026-09-21T21:47:04,836 adding 'skbio/stats/distance/_cutils.cpython-311-arm-linux-gnueabihf.so' 2026-09-21T21:47:04,848 adding 'skbio/stats/distance/_cutils.pyx' 2026-09-21T21:47:04,849 adding 'skbio/stats/distance/_gpu.py' 2026-09-21T21:47:04,854 adding 'skbio/stats/distance/_mantel.py' 2026-09-21T21:47:04,857 adding 'skbio/stats/distance/_mantel_gpu.py' 2026-09-21T21:47:04,861 adding 'skbio/stats/distance/_permanova.py' 2026-09-21T21:47:04,863 adding 'skbio/stats/distance/_permanova_gpu.py' 2026-09-21T21:47:04,867 adding 'skbio/stats/distance/_permdisp.py' 2026-09-21T21:47:04,868 adding 'skbio/stats/distance/_utils.py' 2026-09-21T21:47:04,870 adding 'skbio/stats/distance/tests/__init__.py' 2026-09-21T21:47:04,872 adding 'skbio/stats/distance/tests/test_anosim.py' 2026-09-21T21:47:04,880 adding 'skbio/stats/distance/tests/test_base.py' 2026-09-21T21:47:04,882 adding 'skbio/stats/distance/tests/test_bioenv.py' 2026-09-21T21:47:04,888 adding 'skbio/stats/distance/tests/test_mantel.py' 2026-09-21T21:47:04,892 adding 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2026-09-21T21:47:04,913 adding 'skbio/stats/distance/tests/data/exp_results.txt' 2026-09-21T21:47:04,915 adding 'skbio/stats/distance/tests/data/exp_results_different_column_order.txt' 2026-09-21T21:47:04,916 adding 'skbio/stats/distance/tests/data/exp_results_single_column.txt' 2026-09-21T21:47:04,920 adding 'skbio/stats/distance/tests/data/frameSeries_dm.tsv' 2026-09-21T21:47:04,922 adding 'skbio/stats/distance/tests/data/frameSeries_grouping.tsv' 2026-09-21T21:47:04,924 adding 'skbio/stats/distance/tests/data/mantel_env_dm_vegan.txt' 2026-09-21T21:47:04,926 adding 'skbio/stats/distance/tests/data/mantel_veg_dm_vegan.txt' 2026-09-21T21:47:04,929 adding 'skbio/stats/distance/tests/data/moving_pictures_dm.tsv' 2026-09-21T21:47:04,930 adding 'skbio/stats/distance/tests/data/moving_pictures_mf.tsv' 2026-09-21T21:47:04,931 adding 'skbio/stats/distance/tests/data/pwmantel_exp_results_all_dms.txt' 2026-09-21T21:47:04,932 adding 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'skbio/stats/ordination/_canonical_correspondence_analysis.py' 2026-09-21T21:47:04,951 adding 'skbio/stats/ordination/_center_distance_matrix_numba.py' 2026-09-21T21:47:04,953 adding 'skbio/stats/ordination/_correspondence_analysis.py' 2026-09-21T21:47:05,057 adding 'skbio/stats/ordination/_cutils.c' 2026-09-21T21:47:05,306 adding 'skbio/stats/ordination/_cutils.cpython-311-arm-linux-gnueabihf.so' 2026-09-21T21:47:05,314 adding 'skbio/stats/ordination/_cutils.pyx' 2026-09-21T21:47:05,321 adding 'skbio/stats/ordination/_mmvec.py' 2026-09-21T21:47:05,324 adding 'skbio/stats/ordination/_ordination_results.py' 2026-09-21T21:47:05,327 adding 'skbio/stats/ordination/_principal_component_analysis.py' 2026-09-21T21:47:05,331 adding 'skbio/stats/ordination/_principal_coordinate_analysis.py' 2026-09-21T21:47:05,333 adding 'skbio/stats/ordination/_redundancy_analysis.py' 2026-09-21T21:47:05,335 adding 'skbio/stats/ordination/_utils.py' 2026-09-21T21:47:05,337 adding 'skbio/stats/ordination/tests/__init__.py' 2026-09-21T21:47:05,338 adding 'skbio/stats/ordination/tests/test_canonical_correspondence_analysis.py' 2026-09-21T21:47:05,340 adding 'skbio/stats/ordination/tests/test_correspondence_analysis.py' 2026-09-21T21:47:05,344 adding 'skbio/stats/ordination/tests/test_mmvec.py' 2026-09-21T21:47:05,347 adding 'skbio/stats/ordination/tests/test_ordination_results.py' 2026-09-21T21:47:05,348 adding 'skbio/stats/ordination/tests/test_principal_component_analysis.py' 2026-09-21T21:47:05,351 adding 'skbio/stats/ordination/tests/test_principal_coordinate_analysis.py' 2026-09-21T21:47:05,353 adding 'skbio/stats/ordination/tests/test_redundancy_analysis.py' 2026-09-21T21:47:05,355 adding 'skbio/stats/ordination/tests/test_util.py' 2026-09-21T21:47:05,357 adding 'skbio/stats/ordination/tests/data/L&L_CA_data' 2026-09-21T21:47:05,358 adding 'skbio/stats/ordination/tests/data/PCoA_biplot_descriptors' 2026-09-21T21:47:05,360 adding 'skbio/stats/ordination/tests/data/PCoA_biplot_projected_descriptors' 2026-09-21T21:47:05,361 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data' 2026-09-21T21:47:05,362 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_12dim' 2026-09-21T21:47:05,363 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_2' 2026-09-21T21:47:05,365 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3' 2026-09-21T21:47:05,366 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3_eigh_ref_3dim' 2026-09-21T21:47:05,367 adding 'skbio/stats/ordination/tests/data/PCoA_sample_data_3_fsvd_ref_3dim' 2026-09-21T21:47:05,368 adding 'skbio/stats/ordination/tests/data/PCoA_skbio' 2026-09-21T21:47:05,369 adding 'skbio/stats/ordination/tests/data/example2_X' 2026-09-21T21:47:05,370 adding 'skbio/stats/ordination/tests/data/example2_Y' 2026-09-21T21:47:05,371 adding 'skbio/stats/ordination/tests/data/example2_biplot_scaling1' 2026-09-21T21:47:05,372 adding 'skbio/stats/ordination/tests/data/example2_biplot_scaling2' 2026-09-21T21:47:05,373 adding 'skbio/stats/ordination/tests/data/example2_sample_constraints_scaling1' 2026-09-21T21:47:05,375 adding 'skbio/stats/ordination/tests/data/example2_sample_constraints_scaling2' 2026-09-21T21:47:05,376 adding 'skbio/stats/ordination/tests/data/example2_site_scaling1_from_vegan' 2026-09-21T21:47:05,377 adding 'skbio/stats/ordination/tests/data/example2_site_scaling2_from_vegan' 2026-09-21T21:47:05,378 adding 'skbio/stats/ordination/tests/data/example2_species_scaling1_from_vegan' 2026-09-21T21:47:05,379 adding 'skbio/stats/ordination/tests/data/example2_species_scaling2_from_vegan' 2026-09-21T21:47:05,380 adding 'skbio/stats/ordination/tests/data/example3_X' 2026-09-21T21:47:05,381 adding 'skbio/stats/ordination/tests/data/example3_Y' 2026-09-21T21:47:05,382 adding 'skbio/stats/ordination/tests/data/example3_biplot_scaling1' 2026-09-21T21:47:05,383 adding 'skbio/stats/ordination/tests/data/example3_biplot_scaling2' 2026-09-21T21:47:05,385 adding 'skbio/stats/ordination/tests/data/example3_sample_constraints_scaling1' 2026-09-21T21:47:05,386 adding 'skbio/stats/ordination/tests/data/example3_sample_constraints_scaling2' 2026-09-21T21:47:05,387 adding 'skbio/stats/ordination/tests/data/example3_site_scaling1_from_vegan' 2026-09-21T21:47:05,388 adding 'skbio/stats/ordination/tests/data/example3_site_scaling2_from_vegan' 2026-09-21T21:47:05,389 adding 'skbio/stats/ordination/tests/data/example3_species_scaling1_from_vegan' 2026-09-21T21:47:05,391 adding 'skbio/stats/ordination/tests/data/example3_species_scaling2_from_vegan' 2026-09-21T21:47:05,392 adding 'skbio/stats/ordination/tests/data/exp_PCoAEigenResults_site' 2026-09-21T21:47:05,393 adding 'skbio/stats/ordination/tests/data/exp_PCoAzeros_site' 2026-09-21T21:47:05,395 adding 'skbio/stats/ordination/tests/data/vare_rda_biplot_from_vegan.csv' 2026-09-21T21:47:05,396 adding 'skbio/stats/ordination/tests/data/vare_rda_constraints_from_vegan.csv' 2026-09-21T21:47:05,397 adding 'skbio/stats/ordination/tests/data/vare_rda_eigvals_from_vegan.csv' 2026-09-21T21:47:05,398 adding 'skbio/stats/ordination/tests/data/vare_rda_propexpl_from_vegan.csv' 2026-09-21T21:47:05,400 adding 'skbio/stats/ordination/tests/data/vare_rda_sites_from_vegan.csv' 2026-09-21T21:47:05,401 adding 'skbio/stats/ordination/tests/data/vare_rda_species_from_vegan.csv' 2026-09-21T21:47:05,403 adding 'skbio/stats/ordination/tests/data/varechem.csv' 2026-09-21T21:47:05,405 adding 'skbio/stats/ordination/tests/data/varespec.csv' 2026-09-21T21:47:05,406 adding 'skbio/stats/ordination/tests/data/cf/README.md' 2026-09-21T21:47:05,408 adding 'skbio/stats/ordination/tests/data/cf/metabolite_meta.tsv.sha256' 2026-09-21T21:47:05,409 adding 'skbio/stats/ordination/tests/data/cf/metabolites.tsv.sha256' 2026-09-21T21:47:05,410 adding 'skbio/stats/ordination/tests/data/cf/microbe_meta.tsv.sha256' 2026-09-21T21:47:05,411 adding 'skbio/stats/ordination/tests/data/cf/microbes.tsv.sha256' 2026-09-21T21:47:05,413 adding 'skbio/stats/ordination/tests/data/soils/README.md' 2026-09-21T21:47:05,416 adding 'skbio/stats/ordination/tests/data/soils/metabolites.tsv' 2026-09-21T21:47:05,417 adding 'skbio/stats/ordination/tests/data/soils/metabolites.tsv.sha256' 2026-09-21T21:47:05,424 adding 'skbio/stats/ordination/tests/data/soils/microbes.tsv' 2026-09-21T21:47:05,425 adding 'skbio/stats/ordination/tests/data/soils/microbes.tsv.sha256' 2026-09-21T21:47:05,427 adding 'skbio/stats/tests/__init__.py' 2026-09-21T21:47:05,430 adding 'skbio/stats/tests/test_gradient.py' 2026-09-21T21:47:05,432 adding 'skbio/stats/tests/test_misc.py' 2026-09-21T21:47:05,434 adding 'skbio/stats/tests/test_power.py' 2026-09-21T21:47:05,436 adding 'skbio/stats/tests/test_subsample.py' 2026-09-21T21:47:05,437 adding 'skbio/stats/tests/data/cr_data_out' 2026-09-21T21:47:05,439 adding 'skbio/stats/tests/data/cr_data_raw' 2026-09-21T21:47:05,440 adding 'skbio/stats/tests/data/cr_no_data_out' 2026-09-21T21:47:05,441 adding 'skbio/stats/tests/data/cr_no_data_raw' 2026-09-21T21:47:05,442 adding 'skbio/stats/tests/data/gr_w_msg_out' 2026-09-21T21:47:05,443 adding 'skbio/stats/tests/data/gr_w_msg_raw' 2026-09-21T21:47:05,444 adding 'skbio/stats/tests/data/gr_wo_msg_out' 2026-09-21T21:47:05,446 adding 'skbio/stats/tests/data/gr_wo_msg_raw' 2026-09-21T21:47:05,447 adding 'skbio/stats/tests/data/vr_out' 2026-09-21T21:47:05,448 adding 'skbio/stats/tests/data/vr_raw' 2026-09-21T21:47:05,449 adding 'skbio/stats/tests/data/vr_real_out' 2026-09-21T21:47:05,450 adding 'skbio/stats/tests/data/vr_real_raw' 2026-09-21T21:47:05,453 adding 'skbio/table/__init__.py' 2026-09-21T21:47:05,457 adding 'skbio/table/_augment.py' 2026-09-21T21:47:05,458 adding 'skbio/table/_base.py' 2026-09-21T21:47:05,460 adding 'skbio/table/_tabular.py' 2026-09-21T21:47:05,462 adding 'skbio/table/tests/__init__.py' 2026-09-21T21:47:05,465 adding 'skbio/table/tests/test_augment.py' 2026-09-21T21:47:05,467 adding 'skbio/table/tests/test_base.py' 2026-09-21T21:47:05,469 adding 'skbio/table/tests/test_tabular.py' 2026-09-21T21:47:05,470 adding 'skbio/tests/__init__.py' 2026-09-21T21:47:05,472 adding 'skbio/tests/test_base.py' 2026-09-21T21:47:05,474 adding 'skbio/tests/test_config.py' 2026-09-21T21:47:05,476 adding 'skbio/tests/test_workflow.py' 2026-09-21T21:47:05,479 adding 'skbio/tree/__init__.py' 2026-09-21T21:47:05,709 adding 'skbio/tree/_c_me.c' 2026-09-21T21:47:06,154 adding 'skbio/tree/_c_me.cpython-311-arm-linux-gnueabihf.so' 2026-09-21T21:47:06,181 adding 'skbio/tree/_c_me.pyx' 2026-09-21T21:47:06,276 adding 'skbio/tree/_c_nj.c' 2026-09-21T21:47:06,488 adding 'skbio/tree/_c_nj.cpython-311-arm-linux-gnueabihf.so' 2026-09-21T21:47:06,495 adding 'skbio/tree/_c_nj.pyx' 2026-09-21T21:47:06,498 adding 'skbio/tree/_compare.py' 2026-09-21T21:47:06,499 adding 'skbio/tree/_exception.py' 2026-09-21T21:47:06,501 adding 'skbio/tree/_majority_rule.py' 2026-09-21T21:47:06,509 adding 'skbio/tree/_me.py' 2026-09-21T21:47:06,512 adding 'skbio/tree/_nj.py' 2026-09-21T21:47:06,536 adding 'skbio/tree/_tree.py' 2026-09-21T21:47:06,538 adding 'skbio/tree/_upgma.py' 2026-09-21T21:47:06,540 adding 'skbio/tree/_utils.py' 2026-09-21T21:47:06,542 adding 'skbio/tree/tests/__init__.py' 2026-09-21T21:47:06,543 adding 'skbio/tree/tests/test_compare.py' 2026-09-21T21:47:06,545 adding 'skbio/tree/tests/test_majority_rule.py' 2026-09-21T21:47:06,552 adding 'skbio/tree/tests/test_me.py' 2026-09-21T21:47:06,555 adding 'skbio/tree/tests/test_nj.py' 2026-09-21T21:47:06,566 adding 'skbio/tree/tests/test_tree.py' 2026-09-21T21:47:06,568 adding 'skbio/tree/tests/test_upgma.py' 2026-09-21T21:47:06,569 adding 'skbio/tree/tests/test_utils.py' 2026-09-21T21:47:06,571 adding 'skbio/tree/tests/data/mp100.bme.nni.nwk' 2026-09-21T21:47:06,573 adding 'skbio/tree/tests/data/mp100.bme.nwk' 2026-09-21T21:47:06,574 adding 'skbio/tree/tests/data/mp100.gme.nni.nwk' 2026-09-21T21:47:06,576 adding 'skbio/tree/tests/data/mp100.gme.nwk' 2026-09-21T21:47:06,577 adding 'skbio/tree/tests/data/mp100.nj.nwk' 2026-09-21T21:47:06,583 adding 'skbio/tree/tests/data/mp100.phy' 2026-09-21T21:47:06,585 adding 'skbio/tree/tests/data/mp100.upgma.nwk' 2026-09-21T21:47:06,587 adding 'skbio/util/__init__.py' 2026-09-21T21:47:06,589 adding 'skbio/util/_array.py' 2026-09-21T21:47:06,590 adding 'skbio/util/_decorator.py' 2026-09-21T21:47:06,592 adding 'skbio/util/_docstring.py' 2026-09-21T21:47:06,593 adding 'skbio/util/_exception.py' 2026-09-21T21:47:06,594 adding 'skbio/util/_gpu.py' 2026-09-21T21:47:06,596 adding 'skbio/util/_misc.py' 2026-09-21T21:47:06,597 adding 'skbio/util/_optionals.py' 2026-09-21T21:47:06,598 adding 'skbio/util/_plotting.py' 2026-09-21T21:47:06,600 adding 'skbio/util/_random.py' 2026-09-21T21:47:06,603 adding 'skbio/util/_testing.py' 2026-09-21T21:47:06,605 adding 'skbio/util/_typing.py' 2026-09-21T21:47:06,606 adding 'skbio/util/_warning.py' 2026-09-21T21:47:06,608 adding 'skbio/util/tests/__init__.py' 2026-09-21T21:47:06,610 adding 'skbio/util/tests/test_array.py' 2026-09-21T21:47:06,611 adding 'skbio/util/tests/test_decorator.py' 2026-09-21T21:47:06,613 adding 'skbio/util/tests/test_docstring.py' 2026-09-21T21:47:06,615 adding 'skbio/util/tests/test_misc.py' 2026-09-21T21:47:06,616 adding 'skbio/util/tests/test_optionals.py' 2026-09-21T21:47:06,618 adding 'skbio/util/tests/test_plotting.py' 2026-09-21T21:47:06,619 adding 'skbio/util/tests/test_random.py' 2026-09-21T21:47:06,622 adding 'skbio/util/tests/test_testing.py' 2026-09-21T21:47:06,624 adding 'skbio/util/tests/test_warning.py' 2026-09-21T21:47:06,625 adding 'scikit_bio-0.7.4.dist-info/METADATA' 2026-09-21T21:47:06,626 adding 'scikit_bio-0.7.4.dist-info/WHEEL' 2026-09-21T21:47:06,627 adding 'scikit_bio-0.7.4.dist-info/top_level.txt' 2026-09-21T21:47:06,642 adding 'scikit_bio-0.7.4.dist-info/RECORD' 2026-09-21T21:47:06,749 removing build/bdist.linux-armv7l/wheel 2026-09-21T21:47:08,215 Building wheel for scikit-bio (pyproject.toml): finished with status 'done' 2026-09-21T21:47:08,424 Created wheel for scikit-bio: filename=scikit_bio-0.7.4-cp311-cp311-linux_armv7l.whl size=9632752 sha256=96aae4d99fef214876ba4c2ea08f2af929cacb4e6624813f21cc5571d7d3c232 2026-09-21T21:47:08,426 Stored in directory: /tmp/pip-ephem-wheel-cache-f1_gam3e/wheels/32/13/32/f067585629fc613a9fdcc0785db41d4202933f6eed76106748 2026-09-21T21:47:08,467 Successfully built scikit-bio 2026-09-21T21:47:08,717 Removed build tracker: '/tmp/pip-build-tracker-rzetrl65'