2026-09-21T23:23:07,343 Created temporary directory: /tmp/pip-ephem-wheel-cache-a8sd700y 2026-09-21T23:23:07,345 Created temporary directory: /tmp/pip-build-tracker-1eyvtg7x 2026-09-21T23:23:07,345 Initialized build tracking at /tmp/pip-build-tracker-1eyvtg7x 2026-09-21T23:23:07,346 Created build tracker: /tmp/pip-build-tracker-1eyvtg7x 2026-09-21T23:23:07,346 Entered build tracker: /tmp/pip-build-tracker-1eyvtg7x 2026-09-21T23:23:07,347 Created temporary directory: /tmp/pip-wheel-vfh1dhal 2026-09-21T23:23:07,350 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-21T23:23:07,352 Created temporary directory: /tmp/pip-ephem-wheel-cache-gy03fvvl 2026-09-21T23:23:07,374 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-21T23:23:07,377 2 location(s) to search for versions of isovar: 2026-09-21T23:23:07,377 * https://pypi.org/simple/isovar/ 2026-09-21T23:23:07,377 * https://www.piwheels.org/simple/isovar/ 2026-09-21T23:23:07,378 Fetching project page and analyzing links: https://pypi.org/simple/isovar/ 2026-09-21T23:23:07,379 Getting page https://pypi.org/simple/isovar/ 2026-09-21T23:23:07,380 Found index url https://pypi.org/simple 2026-09-21T23:23:07,625 Fetched page https://pypi.org/simple/isovar/ as application/vnd.pypi.simple.v1+json 2026-09-21T23:23:07,660 Found link https://files.pythonhosted.org/packages/b6/80/350ac9b97f7c872d7f2422a11bdb228a0286661fe2983884724735bff630/isovar-0.0.5.tar.gz (from https://pypi.org/simple/isovar/), 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https://archive1.piwheels.org/simple/isovar/isovar-1.0.0-py3-none-any.whl#sha256=9d77d2228049136fc201f2bc793875593ed7edbdadd7f855faf8c972ae273ccd (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,110 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.9.0-py3-none-any.whl#sha256=93e6c5d78217229ba1fc17fcdba4933e7288a0b5fac47499530543be8d926114 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,111 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.8.5-py3-none-any.whl#sha256=3e040cc19ffb8f5b6563713d12135d20ff3f72aefbc3f682defced21cd6490f1 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,111 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.8.3-py3-none-any.whl#sha256=ab5cf46ee8ef34af6041b12b2ac7c1b502105b0070267f1dd164eae803bda79a (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,112 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.8.2-py3-none-any.whl#sha256=4166229c96128b3f9967de6224794595eee4c29848e38d73439d409d505f1ca0 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,113 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.8.1-py3-none-any.whl#sha256=e1bab4c9464129e5f8a6abf5ba56a2229a934755380f6fac3a60dd2ee9bbf7b8 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,113 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.8.0-py3-none-any.whl#sha256=1a1d224dfc5d19f8d1186cfc7b100dee2e7c3afe1b77e008c076746491cdfc5a (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,114 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.7.5-py3-none-any.whl#sha256=f3665219b1bcaa25b4988a796975a18d4ab15a5549f38c55444f8d426eb51978 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,114 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.7.4-py3-none-any.whl#sha256=a28a28dbc4bc797ba85dddf7fc3f5629eadef4e10779400418df5559ea25d31f (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,115 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.7.3-py3-none-any.whl#sha256=19bb9ea17e75b529ec6d27a10e85691e0e89225c5f47f82656c4e75414504bb3 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,115 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.7.2-py3-none-any.whl#sha256=05fdf6bedb1e653eb76f280196726c2bf133a786d271509ee2ea3453d8df0c58 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,116 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.7.1-py3-none-any.whl#sha256=5819207be82c49b17547f234ec6076992f9af4bcea048c6b6078165116e97e68 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,117 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.7.0-py3-none-any.whl#sha256=7bc474c6a53e930506940e34737ec9f85116cb86eed696db0ea545b5687c112a (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,117 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.6.1-py3-none-any.whl#sha256=a67ea479f0c73cc43fde0d35c8801f6ed3c81f062476dbaf39b5c410c0ba4b7d (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,118 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.6.0-py3-none-any.whl#sha256=37e7cace0e90e2ad432e97fbb4eea705b840edb66fd89ac70f50baf1f7f5d24b (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,118 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.5.2-py3-none-any.whl#sha256=c3a0efab34c6879d8e0c15b80481b591c5ea319601fee4147e28a109ca338c1e (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,119 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.5.0-py3-none-any.whl#sha256=83ba7764960fac3b11d56deee3d616800d6833d1c57f7418d852a04e4f0e93e7 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,119 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.4.0-py3-none-any.whl#sha256=9cfc7274f39f4f218d25eaaaa6ba235cf6a7b457dcc3997ca42322a8fe84bf17 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,120 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.2.4-py3-none-any.whl#sha256=f55b72c484b8bee6bccbb03dd42ba7ab433b3fa89a5c4c5b575b3b26b870e4f0 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,120 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.2.3-py3-none-any.whl#sha256=f12eae279834045a239b4762d1849c44173b29617a7858de5ead71a13d1f39cc (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,121 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.2.2-py3-none-any.whl#sha256=9b8ea377bb2e317603890ef935ddaca811af4337780d82fc56c33517a277182b (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,121 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.2.1-py3-none-any.whl#sha256=a027a8f2bb06d45c573a79bfec0ed8dce083f9120aec3e91482dc74401039e46 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,122 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.2.0-py3-none-any.whl#sha256=ab7b0e6349d9a2c4802489d7cc7a867b23e3c2972f66283839629ac8f858cbce (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,123 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.1.5-py3-none-any.whl#sha256=ba9438ba3b8c2a1e59345d0c9fbfb207ded65feaf93b8d4dbf0972c7de89035c (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,123 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.1.3-py3-none-any.whl#sha256=c266801b0b080abcaf155870dfcd593ca904b27565767a27067326c819f0b15c (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,124 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.1.0-py3-none-any.whl#sha256=272454342ccc3da1af19007ad496e6d33165a4482470cef97f1e1bd4a898aee8 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,124 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.0.6-py3-none-any.whl#sha256=04d869c163e51c11ed2d2bb125bffaf7e0c89cb17d906bcbc52914d1fa888e72 (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,125 Skipping link: No binaries permitted for isovar: https://archive1.piwheels.org/simple/isovar/isovar-0.0.5-py3-none-any.whl#sha256=57d3b95575aae8439f0aaa54ce12c1cb00b1bcb2e4fec582550cb0484903bcbc (from https://www.piwheels.org/simple/isovar/) 2026-09-21T23:23:08,126 Skipping link: not a file: https://www.piwheels.org/simple/isovar/ 2026-09-21T23:23:08,126 Skipping link: not a file: https://pypi.org/simple/isovar/ 2026-09-21T23:23:08,159 Given no hashes to check 1 links for project 'isovar': discarding no candidates 2026-09-21T23:23:08,178 Collecting isovar==1.21.6 2026-09-21T23:23:08,180 Created temporary directory: /tmp/pip-unpack-yby3_tya 2026-09-21T23:23:08,331 Downloading isovar-1.21.6.tar.gz (7.7 MB) 2026-09-21T23:23:09,404 Added isovar==1.21.6 from https://files.pythonhosted.org/packages/05/fa/185f425d4bc96a0ec089d6f6d26f39839c67302453bbc3fb46eda5542628/isovar-1.21.6.tar.gz to build tracker '/tmp/pip-build-tracker-1eyvtg7x' 2026-09-21T23:23:09,409 Created temporary directory: /tmp/pip-build-env-dmeucpm_ 2026-09-21T23:23:09,414 Installing build dependencies: started 2026-09-21T23:23:09,415 Running command pip subprocess to install build dependencies 2026-09-21T23:23:10,572 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-09-21T23:23:11,041 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-21T23:23:11,065 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-21T23:23:12,874 Collecting setuptools>=64 2026-09-21T23:23:12,875 Obtaining dependency information for setuptools>=64 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-09-21T23:23:12,891 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-09-21T23:23:13,133 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-21T23:23:13,210 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-21T23:23:15,963 Installing collected packages: setuptools 2026-09-21T23:23:18,288 Successfully installed setuptools-84.0.0 2026-09-21T23:23:18,555 Installing build dependencies: finished with status 'done' 2026-09-21T23:23:18,562 Getting requirements to build wheel: started 2026-09-21T23:23:18,563 Running command Getting requirements to build wheel 2026-09-21T23:23:19,269 /tmp/pip-build-env-dmeucpm_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-21T23:23:19,269 !! 2026-09-21T23:23:19,270 ******************************************************************************** 2026-09-21T23:23:19,271 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-21T23:23:19,272 License :: OSI Approved :: Apache Software License 2026-09-21T23:23:19,273 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-21T23:23:19,274 ******************************************************************************** 2026-09-21T23:23:19,275 !! 2026-09-21T23:23:19,276 dist._finalize_license_expression() 2026-09-21T23:23:19,277 /tmp/pip-build-env-dmeucpm_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-21T23:23:19,277 !! 2026-09-21T23:23:19,279 ******************************************************************************** 2026-09-21T23:23:19,279 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-21T23:23:19,280 License :: OSI Approved :: Apache Software License 2026-09-21T23:23:19,281 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-21T23:23:19,282 ******************************************************************************** 2026-09-21T23:23:19,283 !! 2026-09-21T23:23:19,283 self._finalize_license_expression() 2026-09-21T23:23:19,284 running egg_info 2026-09-21T23:23:19,287 writing isovar.egg-info/PKG-INFO 2026-09-21T23:23:19,293 writing dependency_links to isovar.egg-info/dependency_links.txt 2026-09-21T23:23:19,295 writing entry points to isovar.egg-info/entry_points.txt 2026-09-21T23:23:19,298 writing requirements to isovar.egg-info/requires.txt 2026-09-21T23:23:19,299 writing top-level names to isovar.egg-info/top_level.txt 2026-09-21T23:23:19,329 reading manifest file 'isovar.egg-info/SOURCES.txt' 2026-09-21T23:23:19,340 reading manifest template 'MANIFEST.in' 2026-09-21T23:23:19,341 adding license file 'LICENSE' 2026-09-21T23:23:19,351 writing manifest file 'isovar.egg-info/SOURCES.txt' 2026-09-21T23:23:19,449 Getting requirements to build wheel: finished with status 'done' 2026-09-21T23:23:19,452 Created temporary directory: /tmp/pip-modern-metadata-wgo764pi 2026-09-21T23:23:19,455 Preparing metadata (pyproject.toml): started 2026-09-21T23:23:19,456 Running command Preparing metadata (pyproject.toml) 2026-09-21T23:23:20,135 /tmp/pip-build-env-dmeucpm_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-21T23:23:20,136 !! 2026-09-21T23:23:20,137 ******************************************************************************** 2026-09-21T23:23:20,137 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-21T23:23:20,138 License :: OSI Approved :: Apache Software License 2026-09-21T23:23:20,140 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-21T23:23:20,140 ******************************************************************************** 2026-09-21T23:23:20,141 !! 2026-09-21T23:23:20,142 dist._finalize_license_expression() 2026-09-21T23:23:20,143 /tmp/pip-build-env-dmeucpm_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-21T23:23:20,144 !! 2026-09-21T23:23:20,145 ******************************************************************************** 2026-09-21T23:23:20,145 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-21T23:23:20,147 License :: OSI Approved :: Apache Software License 2026-09-21T23:23:20,148 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-21T23:23:20,148 ******************************************************************************** 2026-09-21T23:23:20,149 !! 2026-09-21T23:23:20,150 self._finalize_license_expression() 2026-09-21T23:23:20,151 running dist_info 2026-09-21T23:23:20,159 creating /tmp/pip-modern-metadata-wgo764pi/isovar.egg-info 2026-09-21T23:23:20,160 writing /tmp/pip-modern-metadata-wgo764pi/isovar.egg-info/PKG-INFO 2026-09-21T23:23:20,166 writing dependency_links to /tmp/pip-modern-metadata-wgo764pi/isovar.egg-info/dependency_links.txt 2026-09-21T23:23:20,168 writing entry points to /tmp/pip-modern-metadata-wgo764pi/isovar.egg-info/entry_points.txt 2026-09-21T23:23:20,171 writing requirements to /tmp/pip-modern-metadata-wgo764pi/isovar.egg-info/requires.txt 2026-09-21T23:23:20,172 writing top-level names to /tmp/pip-modern-metadata-wgo764pi/isovar.egg-info/top_level.txt 2026-09-21T23:23:20,174 writing manifest file '/tmp/pip-modern-metadata-wgo764pi/isovar.egg-info/SOURCES.txt' 2026-09-21T23:23:20,201 reading manifest file '/tmp/pip-modern-metadata-wgo764pi/isovar.egg-info/SOURCES.txt' 2026-09-21T23:23:20,203 reading manifest template 'MANIFEST.in' 2026-09-21T23:23:20,204 adding license file 'LICENSE' 2026-09-21T23:23:20,212 writing manifest file '/tmp/pip-modern-metadata-wgo764pi/isovar.egg-info/SOURCES.txt' 2026-09-21T23:23:20,213 creating '/tmp/pip-modern-metadata-wgo764pi/isovar-1.21.6.dist-info' 2026-09-21T23:23:20,347 Preparing metadata (pyproject.toml): finished with status 'done' 2026-09-21T23:23:20,353 Source in /tmp/pip-wheel-vfh1dhal/isovar_c058d485bbe741c4ae38f18cde9242e7 has version 1.21.6, which satisfies requirement isovar==1.21.6 from https://files.pythonhosted.org/packages/05/fa/185f425d4bc96a0ec089d6f6d26f39839c67302453bbc3fb46eda5542628/isovar-1.21.6.tar.gz 2026-09-21T23:23:20,354 Removed isovar==1.21.6 from https://files.pythonhosted.org/packages/05/fa/185f425d4bc96a0ec089d6f6d26f39839c67302453bbc3fb46eda5542628/isovar-1.21.6.tar.gz from build tracker '/tmp/pip-build-tracker-1eyvtg7x' 2026-09-21T23:23:20,361 Created temporary directory: /tmp/pip-unpack-7qky4a6n 2026-09-21T23:23:20,362 Building wheels for collected packages: isovar 2026-09-21T23:23:20,366 Created temporary directory: /tmp/pip-wheel-lt4r__8f 2026-09-21T23:23:20,366 Destination directory: /tmp/pip-wheel-lt4r__8f 2026-09-21T23:23:20,368 Building wheel for isovar (pyproject.toml): started 2026-09-21T23:23:20,369 Running command Building wheel for isovar (pyproject.toml) 2026-09-21T23:23:21,001 /tmp/pip-build-env-dmeucpm_/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-21T23:23:21,001 !! 2026-09-21T23:23:21,002 ******************************************************************************** 2026-09-21T23:23:21,003 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-21T23:23:21,004 License :: OSI Approved :: Apache Software License 2026-09-21T23:23:21,005 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-21T23:23:21,006 ******************************************************************************** 2026-09-21T23:23:21,007 !! 2026-09-21T23:23:21,008 dist._finalize_license_expression() 2026-09-21T23:23:21,008 /tmp/pip-build-env-dmeucpm_/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-21T23:23:21,009 !! 2026-09-21T23:23:21,010 ******************************************************************************** 2026-09-21T23:23:21,011 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-21T23:23:21,012 License :: OSI Approved :: Apache Software License 2026-09-21T23:23:21,013 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-21T23:23:21,014 ******************************************************************************** 2026-09-21T23:23:21,015 !! 2026-09-21T23:23:21,015 self._finalize_license_expression() 2026-09-21T23:23:21,016 running bdist_wheel 2026-09-21T23:23:21,027 running build 2026-09-21T23:23:21,028 running build_py 2026-09-21T23:23:21,035 creating build/lib/isovar 2026-09-21T23:23:21,037 copying isovar/string_helpers.py -> build/lib/isovar 2026-09-21T23:23:21,039 copying isovar/variant_sequence.py -> build/lib/isovar 2026-09-21T23:23:21,042 copying isovar/variant_helpers.py -> build/lib/isovar 2026-09-21T23:23:21,044 copying isovar/sv_rna.py -> build/lib/isovar 2026-09-21T23:23:21,048 copying isovar/variant_sequence_creator.py -> build/lib/isovar 2026-09-21T23:23:21,050 copying isovar/logging.py -> build/lib/isovar 2026-09-21T23:23:21,052 copying isovar/variant_orf.py -> build/lib/isovar 2026-09-21T23:23:21,054 copying isovar/phasing.py -> build/lib/isovar 2026-09-21T23:23:21,057 copying isovar/variant_sequence_helpers.py -> build/lib/isovar 2026-09-21T23:23:21,059 copying isovar/chimeric_alignment.py -> build/lib/isovar 2026-09-21T23:23:21,061 copying isovar/read_collector.py -> build/lib/isovar 2026-09-21T23:23:21,064 copying isovar/transcript_assembly_edit.py -> build/lib/isovar 2026-09-21T23:23:21,065 copying isovar/protein_comparison.py -> build/lib/isovar 2026-09-21T23:23:21,068 copying isovar/variant_orf_helpers.py -> build/lib/isovar 2026-09-21T23:23:21,070 copying isovar/transcript_edit_helpers.py -> build/lib/isovar 2026-09-21T23:23:21,072 copying isovar/read_identity.py -> build/lib/isovar 2026-09-21T23:23:21,074 copying isovar/read_evidence.py -> build/lib/isovar 2026-09-21T23:23:21,076 copying isovar/assembly.py -> build/lib/isovar 2026-09-21T23:23:21,078 copying isovar/isovar_result.py -> build/lib/isovar 2026-09-21T23:23:21,081 copying isovar/dataframe_builder.py -> build/lib/isovar 2026-09-21T23:23:21,083 copying isovar/main.py -> build/lib/isovar 2026-09-21T23:23:21,085 copying isovar/read_end_inference.py -> build/lib/isovar 2026-09-21T23:23:21,088 copying isovar/transcript_compatibility.py -> build/lib/isovar 2026-09-21T23:23:21,090 copying isovar/fusion.py -> build/lib/isovar 2026-09-21T23:23:21,093 copying isovar/protein_sequence.py -> build/lib/isovar 2026-09-21T23:23:21,095 copying isovar/isovar_result_provider.py -> build/lib/isovar 2026-09-21T23:23:21,097 copying isovar/translation_key.py -> build/lib/isovar 2026-09-21T23:23:21,099 copying isovar/protein_sequence_creator.py -> build/lib/isovar 2026-09-21T23:23:21,102 copying isovar/translation_helpers.py -> build/lib/isovar 2026-09-21T23:23:21,104 copying isovar/default_parameters.py -> build/lib/isovar 2026-09-21T23:23:21,106 copying isovar/dna.py -> build/lib/isovar 2026-09-21T23:23:21,108 copying isovar/sid_data.py -> build/lib/isovar 2026-09-21T23:23:21,111 copying isovar/allele_read_helpers.py -> build/lib/isovar 2026-09-21T23:23:21,113 copying isovar/dataframe_helpers.py -> build/lib/isovar 2026-09-21T23:23:21,115 copying isovar/osteosarc_data.py -> build/lib/isovar 2026-09-21T23:23:21,118 copying isovar/reference_context.py -> build/lib/isovar 2026-09-21T23:23:21,120 copying isovar/mutant_transcript_source.py -> build/lib/isovar 2026-09-21T23:23:21,121 copying isovar/phase_group.py -> build/lib/isovar 2026-09-21T23:23:21,123 copying isovar/translation.py -> build/lib/isovar 2026-09-21T23:23:21,126 copying isovar/reference_context_helpers.py -> build/lib/isovar 2026-09-21T23:23:21,128 copying isovar/sv_rna_orfs.py -> build/lib/isovar 2026-09-21T23:23:21,130 copying isovar/__init__.py -> build/lib/isovar 2026-09-21T23:23:21,132 copying isovar/allele_read.py -> build/lib/isovar 2026-09-21T23:23:21,134 copying isovar/value_object.py -> build/lib/isovar 2026-09-21T23:23:21,136 copying isovar/read_phasing.py -> build/lib/isovar 2026-09-21T23:23:21,138 copying isovar/aligned_reference_prefix.py -> build/lib/isovar 2026-09-21T23:23:21,141 copying isovar/locus_read.py -> build/lib/isovar 2026-09-21T23:23:21,143 copying isovar/filtering.py -> build/lib/isovar 2026-09-21T23:23:21,145 copying isovar/visualization.py -> build/lib/isovar 2026-09-21T23:23:21,148 copying isovar/fusion_visualization.py -> build/lib/isovar 2026-09-21T23:23:21,150 copying isovar/effect_prediction.py -> build/lib/isovar 2026-09-21T23:23:21,152 copying isovar/common.py -> build/lib/isovar 2026-09-21T23:23:21,154 copying isovar/reference_sequence_key.py -> build/lib/isovar 2026-09-21T23:23:21,156 copying isovar/genetic_code.py -> build/lib/isovar 2026-09-21T23:23:21,159 copying isovar/reference_coding_sequence_key.py -> build/lib/isovar 2026-09-21T23:23:21,161 copying isovar/protein_sequence_helpers.py -> build/lib/isovar 2026-09-21T23:23:21,163 copying isovar/__main__.py -> build/lib/isovar 2026-09-21T23:23:21,165 copying isovar/alignment_score.py -> build/lib/isovar 2026-09-21T23:23:21,168 creating build/lib/isovar/cli 2026-09-21T23:23:21,169 copying isovar/cli/isovar_fusion.py -> build/lib/isovar/cli 2026-09-21T23:23:21,171 copying isovar/cli/commands.py -> build/lib/isovar/cli 2026-09-21T23:23:21,172 copying isovar/cli/isovar_main.py -> build/lib/isovar/cli 2026-09-21T23:23:21,174 copying isovar/cli/main_args.py -> build/lib/isovar/cli 2026-09-21T23:23:21,176 copying isovar/cli/protein_sequence_args.py -> build/lib/isovar/cli 2026-09-21T23:23:21,178 copying isovar/cli/variant_sequences_args.py -> build/lib/isovar/cli 2026-09-21T23:23:21,179 copying isovar/cli/isovar_sv_rna.py -> build/lib/isovar/cli 2026-09-21T23:23:21,182 copying isovar/cli/isovar_allele_counts.py -> build/lib/isovar/cli 2026-09-21T23:23:21,183 copying isovar/cli/isovar_protein_sequences.py -> build/lib/isovar/cli 2026-09-21T23:23:21,185 copying isovar/cli/isovar_variant_reads.py -> build/lib/isovar/cli 2026-09-21T23:23:21,187 copying isovar/cli/rna_args.py -> build/lib/isovar/cli 2026-09-21T23:23:21,189 copying isovar/cli/reference_context_args.py -> build/lib/isovar/cli 2026-09-21T23:23:21,191 copying isovar/cli/isovar_allele_reads.py -> build/lib/isovar/cli 2026-09-21T23:23:21,192 copying isovar/cli/isovar_reference_contexts.py -> build/lib/isovar/cli 2026-09-21T23:23:21,194 copying isovar/cli/__init__.py -> build/lib/isovar/cli 2026-09-21T23:23:21,196 copying isovar/cli/isovar_variant_sequences.py -> build/lib/isovar/cli 2026-09-21T23:23:21,197 copying isovar/cli/filter_args.py -> build/lib/isovar/cli 2026-09-21T23:23:21,199 copying isovar/cli/translation_args.py -> build/lib/isovar/cli 2026-09-21T23:23:21,201 copying isovar/cli/isovar_plot.py -> build/lib/isovar/cli 2026-09-21T23:23:21,204 copying isovar/cli/isovar_translations.py -> build/lib/isovar/cli 2026-09-21T23:23:21,205 copying isovar/cli/output_args.py -> build/lib/isovar/cli 2026-09-21T23:23:21,207 running egg_info 2026-09-21T23:23:21,217 writing isovar.egg-info/PKG-INFO 2026-09-21T23:23:21,222 writing dependency_links to isovar.egg-info/dependency_links.txt 2026-09-21T23:23:21,224 writing entry points to isovar.egg-info/entry_points.txt 2026-09-21T23:23:21,226 writing requirements to isovar.egg-info/requires.txt 2026-09-21T23:23:21,227 writing top-level names to isovar.egg-info/top_level.txt 2026-09-21T23:23:21,245 reading manifest file 'isovar.egg-info/SOURCES.txt' 2026-09-21T23:23:21,256 reading manifest template 'MANIFEST.in' 2026-09-21T23:23:21,257 adding license file 'LICENSE' 2026-09-21T23:23:21,267 writing manifest file 'isovar.egg-info/SOURCES.txt' 2026-09-21T23:23:21,274 copying isovar/logging.conf -> build/lib/isovar 2026-09-21T23:23:21,276 creating build/lib/isovar/data 2026-09-21T23:23:21,277 copying isovar/data/osteosarc-test-data-v1.json -> build/lib/isovar/data 2026-09-21T23:23:21,282 copying isovar/data/sid-reads.json.gz -> build/lib/isovar/data 2026-09-21T23:23:21,389 copying isovar/data/sid-read-recipe.json.gz -> build/lib/isovar/data 2026-09-21T23:23:21,422 installing to build/bdist.linux-armv7l/wheel 2026-09-21T23:23:21,423 running install 2026-09-21T23:23:21,447 running install_lib 2026-09-21T23:23:21,453 creating build/bdist.linux-armv7l/wheel 2026-09-21T23:23:21,456 creating build/bdist.linux-armv7l/wheel/isovar 2026-09-21T23:23:21,458 copying build/lib/isovar/string_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,460 copying build/lib/isovar/variant_sequence.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,464 copying build/lib/isovar/variant_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,466 copying build/lib/isovar/sv_rna.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,470 copying build/lib/isovar/variant_sequence_creator.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,473 copying build/lib/isovar/logging.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,475 copying build/lib/isovar/variant_orf.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,478 copying build/lib/isovar/phasing.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,480 copying build/lib/isovar/logging.conf -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,482 copying build/lib/isovar/variant_sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,485 copying build/lib/isovar/chimeric_alignment.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,488 copying build/lib/isovar/read_collector.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,491 copying build/lib/isovar/transcript_assembly_edit.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,493 copying build/lib/isovar/protein_comparison.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,496 copying build/lib/isovar/variant_orf_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,498 copying build/lib/isovar/transcript_edit_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,501 copying build/lib/isovar/read_identity.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,503 copying build/lib/isovar/read_evidence.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,504 copying build/lib/isovar/assembly.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,507 copying build/lib/isovar/isovar_result.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,510 copying build/lib/isovar/dataframe_builder.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,512 copying build/lib/isovar/main.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,514 copying build/lib/isovar/read_end_inference.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,516 copying build/lib/isovar/transcript_compatibility.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,519 copying build/lib/isovar/fusion.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,521 copying build/lib/isovar/protein_sequence.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,523 copying build/lib/isovar/isovar_result_provider.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,525 copying build/lib/isovar/translation_key.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,527 copying build/lib/isovar/protein_sequence_creator.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,530 copying build/lib/isovar/translation_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,532 copying build/lib/isovar/default_parameters.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,534 copying build/lib/isovar/dna.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,536 copying build/lib/isovar/sid_data.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,538 copying build/lib/isovar/allele_read_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,540 copying build/lib/isovar/dataframe_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,543 copying build/lib/isovar/osteosarc_data.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,545 copying build/lib/isovar/reference_context.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,546 copying build/lib/isovar/mutant_transcript_source.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,548 copying build/lib/isovar/phase_group.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,550 copying build/lib/isovar/translation.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,552 copying build/lib/isovar/reference_context_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,554 copying build/lib/isovar/sv_rna_orfs.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,557 copying build/lib/isovar/__init__.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,558 copying build/lib/isovar/allele_read.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,561 copying build/lib/isovar/value_object.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,563 copying build/lib/isovar/read_phasing.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,565 copying build/lib/isovar/aligned_reference_prefix.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,567 copying build/lib/isovar/locus_read.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,569 copying build/lib/isovar/filtering.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,571 copying build/lib/isovar/visualization.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,574 copying build/lib/isovar/fusion_visualization.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,577 copying build/lib/isovar/effect_prediction.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,579 copying build/lib/isovar/common.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,581 copying build/lib/isovar/reference_sequence_key.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,583 copying build/lib/isovar/genetic_code.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,585 creating build/bdist.linux-armv7l/wheel/isovar/data 2026-09-21T23:23:21,586 copying build/lib/isovar/data/sid-reads.json.gz -> build/bdist.linux-armv7l/wheel/./isovar/data 2026-09-21T23:23:21,689 copying build/lib/isovar/data/osteosarc-test-data-v1.json -> build/bdist.linux-armv7l/wheel/./isovar/data 2026-09-21T23:23:21,693 copying build/lib/isovar/data/sid-read-recipe.json.gz -> build/bdist.linux-armv7l/wheel/./isovar/data 2026-09-21T23:23:21,712 copying build/lib/isovar/reference_coding_sequence_key.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,714 copying build/lib/isovar/protein_sequence_helpers.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,717 copying build/lib/isovar/__main__.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,719 copying build/lib/isovar/alignment_score.py -> build/bdist.linux-armv7l/wheel/./isovar 2026-09-21T23:23:21,722 creating build/bdist.linux-armv7l/wheel/isovar/cli 2026-09-21T23:23:21,723 copying build/lib/isovar/cli/isovar_fusion.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,725 copying build/lib/isovar/cli/commands.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,728 copying build/lib/isovar/cli/isovar_main.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,730 copying build/lib/isovar/cli/main_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,733 copying build/lib/isovar/cli/protein_sequence_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,735 copying build/lib/isovar/cli/variant_sequences_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,737 copying build/lib/isovar/cli/isovar_sv_rna.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,739 copying build/lib/isovar/cli/isovar_allele_counts.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,741 copying build/lib/isovar/cli/isovar_protein_sequences.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,744 copying build/lib/isovar/cli/isovar_variant_reads.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,746 copying build/lib/isovar/cli/rna_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,749 copying build/lib/isovar/cli/reference_context_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,751 copying build/lib/isovar/cli/isovar_allele_reads.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,753 copying build/lib/isovar/cli/isovar_reference_contexts.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,756 copying build/lib/isovar/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,758 copying build/lib/isovar/cli/isovar_variant_sequences.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,760 copying build/lib/isovar/cli/filter_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,762 copying build/lib/isovar/cli/translation_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,765 copying build/lib/isovar/cli/isovar_plot.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,768 copying build/lib/isovar/cli/isovar_translations.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,770 copying build/lib/isovar/cli/output_args.py -> build/bdist.linux-armv7l/wheel/./isovar/cli 2026-09-21T23:23:21,772 running install_egg_info 2026-09-21T23:23:21,777 Copying isovar.egg-info to build/bdist.linux-armv7l/wheel/./isovar-1.21.6-py3.11.egg-info 2026-09-21T23:23:21,789 running install_scripts 2026-09-21T23:23:21,802 creating build/bdist.linux-armv7l/wheel/isovar-1.21.6.dist-info/WHEEL 2026-09-21T23:23:21,806 creating '/tmp/pip-wheel-lt4r__8f/.tmp-mpdudxpt/isovar-1.21.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-09-21T23:23:21,809 adding 'isovar/__init__.py' 2026-09-21T23:23:21,811 adding 'isovar/__main__.py' 2026-09-21T23:23:21,813 adding 'isovar/aligned_reference_prefix.py' 2026-09-21T23:23:21,815 adding 'isovar/alignment_score.py' 2026-09-21T23:23:21,817 adding 'isovar/allele_read.py' 2026-09-21T23:23:21,819 adding 'isovar/allele_read_helpers.py' 2026-09-21T23:23:21,822 adding 'isovar/assembly.py' 2026-09-21T23:23:21,825 adding 'isovar/chimeric_alignment.py' 2026-09-21T23:23:21,826 adding 'isovar/common.py' 2026-09-21T23:23:21,829 adding 'isovar/dataframe_builder.py' 2026-09-21T23:23:21,831 adding 'isovar/dataframe_helpers.py' 2026-09-21T23:23:21,833 adding 'isovar/default_parameters.py' 2026-09-21T23:23:21,835 adding 'isovar/dna.py' 2026-09-21T23:23:21,837 adding 'isovar/effect_prediction.py' 2026-09-21T23:23:21,839 adding 'isovar/filtering.py' 2026-09-21T23:23:21,842 adding 'isovar/fusion.py' 2026-09-21T23:23:21,844 adding 'isovar/fusion_visualization.py' 2026-09-21T23:23:21,846 adding 'isovar/genetic_code.py' 2026-09-21T23:23:21,850 adding 'isovar/isovar_result.py' 2026-09-21T23:23:21,851 adding 'isovar/isovar_result_provider.py' 2026-09-21T23:23:21,853 adding 'isovar/locus_read.py' 2026-09-21T23:23:21,854 adding 'isovar/logging.conf' 2026-09-21T23:23:21,856 adding 'isovar/logging.py' 2026-09-21T23:23:21,857 adding 'isovar/main.py' 2026-09-21T23:23:21,859 adding 'isovar/mutant_transcript_source.py' 2026-09-21T23:23:21,860 adding 'isovar/osteosarc_data.py' 2026-09-21T23:23:21,862 adding 'isovar/phase_group.py' 2026-09-21T23:23:21,864 adding 'isovar/phasing.py' 2026-09-21T23:23:21,866 adding 'isovar/protein_comparison.py' 2026-09-21T23:23:21,868 adding 'isovar/protein_sequence.py' 2026-09-21T23:23:21,872 adding 'isovar/protein_sequence_creator.py' 2026-09-21T23:23:21,873 adding 'isovar/protein_sequence_helpers.py' 2026-09-21T23:23:21,880 adding 'isovar/read_collector.py' 2026-09-21T23:23:21,882 adding 'isovar/read_end_inference.py' 2026-09-21T23:23:21,884 adding 'isovar/read_evidence.py' 2026-09-21T23:23:21,885 adding 'isovar/read_identity.py' 2026-09-21T23:23:21,887 adding 'isovar/read_phasing.py' 2026-09-21T23:23:21,889 adding 'isovar/reference_coding_sequence_key.py' 2026-09-21T23:23:21,890 adding 'isovar/reference_context.py' 2026-09-21T23:23:21,892 adding 'isovar/reference_context_helpers.py' 2026-09-21T23:23:21,893 adding 'isovar/reference_sequence_key.py' 2026-09-21T23:23:21,895 adding 'isovar/sid_data.py' 2026-09-21T23:23:21,897 adding 'isovar/string_helpers.py' 2026-09-21T23:23:21,908 adding 'isovar/sv_rna.py' 2026-09-21T23:23:21,910 adding 'isovar/sv_rna_orfs.py' 2026-09-21T23:23:21,912 adding 'isovar/transcript_assembly_edit.py' 2026-09-21T23:23:21,913 adding 'isovar/transcript_compatibility.py' 2026-09-21T23:23:21,914 adding 'isovar/transcript_edit_helpers.py' 2026-09-21T23:23:21,916 adding 'isovar/translation.py' 2026-09-21T23:23:21,917 adding 'isovar/translation_helpers.py' 2026-09-21T23:23:21,918 adding 'isovar/translation_key.py' 2026-09-21T23:23:21,920 adding 'isovar/value_object.py' 2026-09-21T23:23:21,921 adding 'isovar/variant_helpers.py' 2026-09-21T23:23:21,923 adding 'isovar/variant_orf.py' 2026-09-21T23:23:21,925 adding 'isovar/variant_orf_helpers.py' 2026-09-21T23:23:21,927 adding 'isovar/variant_sequence.py' 2026-09-21T23:23:21,929 adding 'isovar/variant_sequence_creator.py' 2026-09-21T23:23:21,931 adding 'isovar/variant_sequence_helpers.py' 2026-09-21T23:23:21,936 adding 'isovar/visualization.py' 2026-09-21T23:23:21,938 adding 'isovar/cli/__init__.py' 2026-09-21T23:23:21,940 adding 'isovar/cli/commands.py' 2026-09-21T23:23:21,941 adding 'isovar/cli/filter_args.py' 2026-09-21T23:23:21,942 adding 'isovar/cli/isovar_allele_counts.py' 2026-09-21T23:23:21,944 adding 'isovar/cli/isovar_allele_reads.py' 2026-09-21T23:23:21,945 adding 'isovar/cli/isovar_fusion.py' 2026-09-21T23:23:21,946 adding 'isovar/cli/isovar_main.py' 2026-09-21T23:23:21,948 adding 'isovar/cli/isovar_plot.py' 2026-09-21T23:23:21,949 adding 'isovar/cli/isovar_protein_sequences.py' 2026-09-21T23:23:21,950 adding 'isovar/cli/isovar_reference_contexts.py' 2026-09-21T23:23:21,952 adding 'isovar/cli/isovar_sv_rna.py' 2026-09-21T23:23:21,953 adding 'isovar/cli/isovar_translations.py' 2026-09-21T23:23:21,954 adding 'isovar/cli/isovar_variant_reads.py' 2026-09-21T23:23:21,955 adding 'isovar/cli/isovar_variant_sequences.py' 2026-09-21T23:23:21,957 adding 'isovar/cli/main_args.py' 2026-09-21T23:23:21,958 adding 'isovar/cli/output_args.py' 2026-09-21T23:23:21,959 adding 'isovar/cli/protein_sequence_args.py' 2026-09-21T23:23:21,961 adding 'isovar/cli/reference_context_args.py' 2026-09-21T23:23:21,962 adding 'isovar/cli/rna_args.py' 2026-09-21T23:23:21,964 adding 'isovar/cli/translation_args.py' 2026-09-21T23:23:21,965 adding 'isovar/cli/variant_sequences_args.py' 2026-09-21T23:23:21,974 adding 'isovar/data/osteosarc-test-data-v1.json' 2026-09-21T23:23:22,093 adding 'isovar/data/sid-read-recipe.json.gz' 2026-09-21T23:23:22,772 adding 'isovar/data/sid-reads.json.gz' 2026-09-21T23:23:22,814 adding 'isovar-1.21.6.dist-info/licenses/LICENSE' 2026-09-21T23:23:22,818 adding 'isovar-1.21.6.dist-info/METADATA' 2026-09-21T23:23:22,819 adding 'isovar-1.21.6.dist-info/WHEEL' 2026-09-21T23:23:22,820 adding 'isovar-1.21.6.dist-info/entry_points.txt' 2026-09-21T23:23:22,821 adding 'isovar-1.21.6.dist-info/top_level.txt' 2026-09-21T23:23:22,823 adding 'isovar-1.21.6.dist-info/RECORD' 2026-09-21T23:23:22,902 removing build/bdist.linux-armv7l/wheel 2026-09-21T23:23:23,022 Building wheel for isovar (pyproject.toml): finished with status 'done' 2026-09-21T23:23:23,186 Created wheel for isovar: filename=isovar-1.21.6-py3-none-any.whl size=7597249 sha256=4f66c011855cbe4590705f1cc938fa16fa838f8623787d43d3dd674ad99bd2c7 2026-09-21T23:23:23,187 Stored in directory: /tmp/pip-ephem-wheel-cache-gy03fvvl/wheels/6a/ad/30/da338a37957dd21ad54cae4d3f7eb69d2bdd3203feb86650a8 2026-09-21T23:23:23,207 Successfully built isovar 2026-09-21T23:23:23,393 Removed build tracker: '/tmp/pip-build-tracker-1eyvtg7x'