2026-09-22T20:17:33,390 Created temporary directory: /tmp/pip-ephem-wheel-cache-bowg08k0 2026-09-22T20:17:33,392 Created temporary directory: /tmp/pip-build-tracker-yfeygjrm 2026-09-22T20:17:33,393 Initialized build tracking at /tmp/pip-build-tracker-yfeygjrm 2026-09-22T20:17:33,393 Created build tracker: /tmp/pip-build-tracker-yfeygjrm 2026-09-22T20:17:33,394 Entered build tracker: /tmp/pip-build-tracker-yfeygjrm 2026-09-22T20:17:33,394 Created temporary directory: /tmp/pip-wheel-tppn_hfs 2026-09-22T20:17:33,397 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-22T20:17:33,400 Created temporary directory: /tmp/pip-ephem-wheel-cache-nrj_0pzo 2026-09-22T20:17:33,421 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-22T20:17:33,425 2 location(s) to search for versions of hitlist: 2026-09-22T20:17:33,425 * https://pypi.org/simple/hitlist/ 2026-09-22T20:17:33,425 * https://www.piwheels.org/simple/hitlist/ 2026-09-22T20:17:33,425 Fetching project page and analyzing links: https://pypi.org/simple/hitlist/ 2026-09-22T20:17:33,426 Getting page https://pypi.org/simple/hitlist/ 2026-09-22T20:17:33,428 Found index url https://pypi.org/simple 2026-09-22T20:17:33,671 Fetched page https://pypi.org/simple/hitlist/ as application/vnd.pypi.simple.v1+json 2026-09-22T20:17:33,715 Skipping link: No binaries permitted for hitlist: 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Skipping link: No binaries permitted for hitlist: https://files.pythonhosted.org/packages/57/d1/f4ef9388a13f033c1201631118b953999e4b91d21eb8f71dec3c145343bc/hitlist-1.30.51-py3-none-any.whl (from https://pypi.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:33,735 Found link https://files.pythonhosted.org/packages/ec/59/e0e22e74150b44bd74feaf43f1a4925e8c1e8edac4144909714cf2daac16/hitlist-1.30.51.tar.gz (from https://pypi.org/simple/hitlist/) (requires-python:>=3.9), version: 1.30.51 2026-09-22T20:17:33,736 Skipping link: No binaries permitted for hitlist: https://files.pythonhosted.org/packages/13/5f/464e6f03556fa600b3f82c412eb61fed23ed66b17ede064541402421d487/hitlist-1.30.52-py3-none-any.whl (from https://pypi.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:33,737 Found link https://files.pythonhosted.org/packages/09/9d/5d092f62e372801c6b6146aab9b051da19cd3388896c6d5a087a04bcea4a/hitlist-1.30.52.tar.gz (from https://pypi.org/simple/hitlist/) 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Skipping link: No binaries permitted for hitlist: https://files.pythonhosted.org/packages/26/6d/f152910b42b26e0403d2d346a6275c38cdc82e0973cfed0ad4c2f19c47e2/hitlist-1.30.61-py3-none-any.whl (from https://pypi.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:33,750 Found link https://files.pythonhosted.org/packages/7f/01/98e9f187789bfe11acf253784494a94f516fd34e33ae089cce96e74533e0/hitlist-1.30.61.tar.gz (from https://pypi.org/simple/hitlist/) (requires-python:>=3.9), version: 1.30.61 2026-09-22T20:17:33,751 Skipping link: No binaries permitted for hitlist: https://files.pythonhosted.org/packages/05/a8/08cf9aba905cf4a861a67560e9cfa724992fefcda6822f6cf845c9be622c/hitlist-1.30.62-py3-none-any.whl (from https://pypi.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:33,752 Found link https://files.pythonhosted.org/packages/c6/fc/48a51a94ec9b226a462bae38ff44ed8fef665a2f1558adca846772a2125c/hitlist-1.30.62.tar.gz (from https://pypi.org/simple/hitlist/) 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https://archive1.piwheels.org/simple/hitlist/hitlist-1.31.1-py3-none-any.whl#sha256=559538976f69b29382d1c5481c5ba31931e11cc99c27e90fba8fade098ccb618 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,207 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.31.0-py3-none-any.whl#sha256=51b94cbdc21cf72bdaacb66086ab2f21cc10606d129767c9455a773e0092caff (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,207 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.65-py3-none-any.whl#sha256=e5b2bce06562894f8ecdb7a456477250c668a55c5c5f353c04618c096f0bf96f (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,208 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.64-py3-none-any.whl#sha256=545fdd1a7844aff8655daa83ce2c87cd6fe2a7d6b4b12443708734e54a2fdfce (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,208 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.63-py3-none-any.whl#sha256=1841e86d3c644bd920d6629d4aef6a13d4cab7ad673e46894c37cc8bae763881 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,209 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.62-py3-none-any.whl#sha256=5131887042b636fd4997aacf0a84d1857337f85252235e2fbc8fddf00ae7cd7a (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,209 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.61-py3-none-any.whl#sha256=7e6d479e5701576e78c62ef35217f07d1d2b0bc95e7f0ae40f37d1e6b183ad87 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,210 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.60-py3-none-any.whl#sha256=bd7995ed45bec6de7859c665453748cb070e889972a9a7538c73c07891707016 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,211 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.59-py3-none-any.whl#sha256=14e7fed0605bd2566ddfdd6771568a78b8596d1a434e32f6ed74004528c72aa5 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,211 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.58-py3-none-any.whl#sha256=f22148ae44d314291d04e6d7fe217365ebf282dcc3c240a659f7bb1a84caf017 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,212 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.57-py3-none-any.whl#sha256=a19a0f54fdd5bed376af765627301abe7e76cace2588bb20c338b093a512f553 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,213 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.56-py3-none-any.whl#sha256=a77d4a119630471759bc7df97c6240a5b0cbb7d72e0d95c4cfc930e3480f7b98 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,213 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.55-py3-none-any.whl#sha256=c1806fcae1b27c5142e98f8b93e7644e679221bb64be7e650e869e47eb0c2fa1 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,214 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.53-py3-none-any.whl#sha256=ec892f1074548fdb5701062606221ef6cb4f4ad3d2025e6a486cee7103c0e168 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,214 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.52-py3-none-any.whl#sha256=37159083e862b54d2ed8e89b1d4159b1a56397323be730c06851b863ef7d8eff (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,214 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.51-py3-none-any.whl#sha256=db319d585648e0ebb6be796dfb97f99a8545508621723dba6f41fafe1a7bee62 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,215 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.50-py3-none-any.whl#sha256=2009453c4ad5a666b63b9f494444b9442df32b856f51e339292b3563f9f2e3fd (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,215 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.49-py3-none-any.whl#sha256=44320a0ce06c756938636ae876abc3a8de14bac23cf28c41d8f506333c572223 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,216 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.48-py3-none-any.whl#sha256=5debb42f0621a515d49463dec793b5042bfb1eebdff7292e3d829a2adbf1c01a (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,217 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.47-py3-none-any.whl#sha256=440df7ea54c24ade1bd025a5a66a5debcb8de46d7b08ec430cc55d75e068044d (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,217 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.46-py3-none-any.whl#sha256=d468632e2e1fd1dd7cacd82a6ec7ca3e67461c9eba7f3e68aea4c3b5fa7bb662 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,218 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.45-py3-none-any.whl#sha256=af16dccf35420292681dc42a2ebaffae053603c762c77d600ac30af19d869397 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,219 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.40-py3-none-any.whl#sha256=d10ce91995c6b7c529eda830907344f6ec8e175a223b660ad478c0a07bb5e995 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,219 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.39-py3-none-any.whl#sha256=1edc17c6554a727cb4ec9265e20bfa7f2f5c2e4862d8354837175599b4b06dc4 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,220 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.37-py3-none-any.whl#sha256=67f11f1c129ced0a6d6c20742a8f9b6a3f7e4a1f524da33c92a638d839643330 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,221 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.36-py3-none-any.whl#sha256=b28d3c309bed37347aa5cc07e0d3034484f0efd4a53ed5c06eb402fc644c4bfc (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,221 Skipping link: No binaries permitted for hitlist: https://archive1.piwheels.org/simple/hitlist/hitlist-1.30.35-py3-none-any.whl#sha256=fc78509544bfbdfac1f2db63d8001880536f3726f55919b2339adae06e7a95e0 (from https://www.piwheels.org/simple/hitlist/) (requires-python:>=3.9) 2026-09-22T20:17:34,222 Skipping link: not a file: https://www.piwheels.org/simple/hitlist/ 2026-09-22T20:17:34,222 Skipping link: not a file: https://pypi.org/simple/hitlist/ 2026-09-22T20:17:34,259 Given no hashes to check 1 links for project 'hitlist': discarding no candidates 2026-09-22T20:17:34,277 Collecting hitlist==1.62.23 2026-09-22T20:17:34,279 Created temporary directory: /tmp/pip-unpack-uap0qstc 2026-09-22T20:17:34,430 Downloading hitlist-1.62.23.tar.gz (2.4 MB) 2026-09-22T20:17:35,237 Added hitlist==1.62.23 from https://files.pythonhosted.org/packages/24/28/d52f76df7cefe50f2e2b81eb59f600fd8485d025a89c325208a7b3b99d77/hitlist-1.62.23.tar.gz to build tracker '/tmp/pip-build-tracker-yfeygjrm' 2026-09-22T20:17:35,244 Created temporary directory: /tmp/pip-build-env-kgpk8oni 2026-09-22T20:17:35,248 Installing build dependencies: started 2026-09-22T20:17:35,249 Running command pip subprocess to install build dependencies 2026-09-22T20:17:36,404 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-09-22T20:17:36,842 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-22T20:17:36,864 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-22T20:17:38,728 Collecting setuptools>=61.0 2026-09-22T20:17:38,729 Obtaining dependency information for setuptools>=61.0 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-09-22T20:17:38,742 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-09-22T20:17:38,981 Collecting wheel 2026-09-22T20:17:38,982 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-09-22T20:17:38,996 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-09-22T20:17:39,182 Collecting packaging>=24.0 2026-09-22T20:17:39,183 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-09-22T20:17:39,195 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-09-22T20:17:39,392 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-09-22T20:17:39,415 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-22T20:17:39,494 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-22T20:17:39,523 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-09-22T20:17:39,550 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-22T20:17:39,625 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-22T20:17:42,407 Installing collected packages: setuptools, packaging, wheel 2026-09-22T20:17:45,114 Creating /tmp/pip-build-env-kgpk8oni/overlay/local/bin 2026-09-22T20:17:45,116 changing mode of /tmp/pip-build-env-kgpk8oni/overlay/local/bin/wheel to 755 2026-09-22T20:17:45,136 Successfully installed packaging-26.3 setuptools-84.0.0 wheel-0.48.0 2026-09-22T20:17:45,422 Installing build dependencies: finished with status 'done' 2026-09-22T20:17:45,428 Getting requirements to build wheel: started 2026-09-22T20:17:45,430 Running command Getting requirements to build wheel 2026-09-22T20:17:46,056 /tmp/pip-build-env-kgpk8oni/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-09-22T20:17:46,056 !! 2026-09-22T20:17:46,057 ******************************************************************************** 2026-09-22T20:17:46,058 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-09-22T20:17:46,059 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-09-22T20:17:46,059 or your builds will no longer be supported. 2026-09-22T20:17:46,060 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-22T20:17:46,061 ******************************************************************************** 2026-09-22T20:17:46,062 !! 2026-09-22T20:17:46,063 corresp(dist, value, root_dir) 2026-09-22T20:17:46,143 /tmp/pip-build-env-kgpk8oni/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-22T20:17:46,143 !! 2026-09-22T20:17:46,144 ******************************************************************************** 2026-09-22T20:17:46,145 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-22T20:17:46,146 License :: OSI Approved :: Apache Software License 2026-09-22T20:17:46,147 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-22T20:17:46,148 ******************************************************************************** 2026-09-22T20:17:46,149 !! 2026-09-22T20:17:46,150 dist._finalize_license_expression() 2026-09-22T20:17:46,151 /tmp/pip-build-env-kgpk8oni/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-22T20:17:46,151 !! 2026-09-22T20:17:46,152 ******************************************************************************** 2026-09-22T20:17:46,153 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-22T20:17:46,154 License :: OSI Approved :: Apache Software License 2026-09-22T20:17:46,155 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-22T20:17:46,155 ******************************************************************************** 2026-09-22T20:17:46,157 !! 2026-09-22T20:17:46,157 self._finalize_license_expression() 2026-09-22T20:17:46,160 running egg_info 2026-09-22T20:17:46,166 writing hitlist.egg-info/PKG-INFO 2026-09-22T20:17:46,172 writing dependency_links to hitlist.egg-info/dependency_links.txt 2026-09-22T20:17:46,174 writing entry points to hitlist.egg-info/entry_points.txt 2026-09-22T20:17:46,177 writing requirements to hitlist.egg-info/requires.txt 2026-09-22T20:17:46,179 writing top-level names to hitlist.egg-info/top_level.txt 2026-09-22T20:17:46,217 reading manifest file 'hitlist.egg-info/SOURCES.txt' 2026-09-22T20:17:46,226 reading manifest template 'MANIFEST.in' 2026-09-22T20:17:46,228 warning: no previously-included files found matching 'hitlist/data/bulk_proteomics/bekker_jensen_2017_peptides.csv.gz' 2026-09-22T20:17:46,230 warning: no previously-included files found matching 'hitlist/data/bulk_proteomics/bekker_jensen_2017_protein_abundance.csv.gz' 2026-09-22T20:17:46,231 warning: no previously-included files found matching 'hitlist/data/bulk_proteomics/ccle_nusinow_2020.csv.gz' 2026-09-22T20:17:46,233 warning: no previously-included files found matching 'hitlist/data/supplementary/strazar_2023_hla2.csv' 2026-09-22T20:17:46,234 warning: no previously-included files found matching 'hitlist/data/supplementary/abelin_2019_maptac_class2.csv' 2026-09-22T20:17:46,235 adding license file 'LICENSE' 2026-09-22T20:17:46,243 writing manifest file 'hitlist.egg-info/SOURCES.txt' 2026-09-22T20:17:46,344 Getting requirements to build wheel: finished with status 'done' 2026-09-22T20:17:46,347 Created temporary directory: /tmp/pip-modern-metadata-sdr9mfg2 2026-09-22T20:17:46,349 Preparing metadata (pyproject.toml): started 2026-09-22T20:17:46,351 Running command Preparing metadata (pyproject.toml) 2026-09-22T20:17:46,929 /tmp/pip-build-env-kgpk8oni/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-09-22T20:17:46,930 !! 2026-09-22T20:17:46,931 ******************************************************************************** 2026-09-22T20:17:46,931 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-09-22T20:17:46,932 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-09-22T20:17:46,933 or your builds will no longer be supported. 2026-09-22T20:17:46,934 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-22T20:17:46,935 ******************************************************************************** 2026-09-22T20:17:46,936 !! 2026-09-22T20:17:46,937 corresp(dist, value, root_dir) 2026-09-22T20:17:47,012 /tmp/pip-build-env-kgpk8oni/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-22T20:17:47,012 !! 2026-09-22T20:17:47,014 ******************************************************************************** 2026-09-22T20:17:47,014 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-22T20:17:47,016 License :: OSI Approved :: Apache Software License 2026-09-22T20:17:47,017 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-22T20:17:47,017 ******************************************************************************** 2026-09-22T20:17:47,019 !! 2026-09-22T20:17:47,019 dist._finalize_license_expression() 2026-09-22T20:17:47,020 /tmp/pip-build-env-kgpk8oni/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-22T20:17:47,021 !! 2026-09-22T20:17:47,022 ******************************************************************************** 2026-09-22T20:17:47,023 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-22T20:17:47,024 License :: OSI Approved :: Apache Software License 2026-09-22T20:17:47,025 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-22T20:17:47,026 ******************************************************************************** 2026-09-22T20:17:47,028 !! 2026-09-22T20:17:47,028 self._finalize_license_expression() 2026-09-22T20:17:47,029 running dist_info 2026-09-22T20:17:47,037 creating /tmp/pip-modern-metadata-sdr9mfg2/hitlist.egg-info 2026-09-22T20:17:47,038 writing /tmp/pip-modern-metadata-sdr9mfg2/hitlist.egg-info/PKG-INFO 2026-09-22T20:17:47,045 writing dependency_links to /tmp/pip-modern-metadata-sdr9mfg2/hitlist.egg-info/dependency_links.txt 2026-09-22T20:17:47,046 writing entry points to /tmp/pip-modern-metadata-sdr9mfg2/hitlist.egg-info/entry_points.txt 2026-09-22T20:17:47,049 writing requirements to /tmp/pip-modern-metadata-sdr9mfg2/hitlist.egg-info/requires.txt 2026-09-22T20:17:47,050 writing top-level names to /tmp/pip-modern-metadata-sdr9mfg2/hitlist.egg-info/top_level.txt 2026-09-22T20:17:47,051 writing manifest file '/tmp/pip-modern-metadata-sdr9mfg2/hitlist.egg-info/SOURCES.txt' 2026-09-22T20:17:47,085 reading manifest file '/tmp/pip-modern-metadata-sdr9mfg2/hitlist.egg-info/SOURCES.txt' 2026-09-22T20:17:47,087 reading manifest template 'MANIFEST.in' 2026-09-22T20:17:47,089 warning: no previously-included files found matching 'hitlist/data/bulk_proteomics/bekker_jensen_2017_peptides.csv.gz' 2026-09-22T20:17:47,090 warning: no previously-included files found matching 'hitlist/data/bulk_proteomics/bekker_jensen_2017_protein_abundance.csv.gz' 2026-09-22T20:17:47,091 warning: no previously-included files found matching 'hitlist/data/bulk_proteomics/ccle_nusinow_2020.csv.gz' 2026-09-22T20:17:47,092 warning: no previously-included files found matching 'hitlist/data/supplementary/strazar_2023_hla2.csv' 2026-09-22T20:17:47,094 warning: no previously-included files found matching 'hitlist/data/supplementary/abelin_2019_maptac_class2.csv' 2026-09-22T20:17:47,094 adding license file 'LICENSE' 2026-09-22T20:17:47,100 writing manifest file '/tmp/pip-modern-metadata-sdr9mfg2/hitlist.egg-info/SOURCES.txt' 2026-09-22T20:17:47,101 creating '/tmp/pip-modern-metadata-sdr9mfg2/hitlist-1.62.23.dist-info' 2026-09-22T20:17:47,233 Preparing metadata (pyproject.toml): finished with status 'done' 2026-09-22T20:17:47,241 Source in /tmp/pip-wheel-tppn_hfs/hitlist_0a3eededdb2a4717a448dd8201577f7e has version 1.62.23, which satisfies requirement hitlist==1.62.23 from https://files.pythonhosted.org/packages/24/28/d52f76df7cefe50f2e2b81eb59f600fd8485d025a89c325208a7b3b99d77/hitlist-1.62.23.tar.gz 2026-09-22T20:17:47,242 Removed hitlist==1.62.23 from https://files.pythonhosted.org/packages/24/28/d52f76df7cefe50f2e2b81eb59f600fd8485d025a89c325208a7b3b99d77/hitlist-1.62.23.tar.gz from build tracker '/tmp/pip-build-tracker-yfeygjrm' 2026-09-22T20:17:47,255 Created temporary directory: /tmp/pip-unpack-extvesi6 2026-09-22T20:17:47,256 Building wheels for collected packages: hitlist 2026-09-22T20:17:47,261 Created temporary directory: /tmp/pip-wheel-ph05rx9_ 2026-09-22T20:17:47,262 Destination directory: /tmp/pip-wheel-ph05rx9_ 2026-09-22T20:17:47,264 Building wheel for hitlist (pyproject.toml): started 2026-09-22T20:17:47,265 Running command Building wheel for hitlist (pyproject.toml) 2026-09-22T20:17:47,824 /tmp/pip-build-env-kgpk8oni/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-09-22T20:17:47,824 !! 2026-09-22T20:17:47,825 ******************************************************************************** 2026-09-22T20:17:47,826 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-09-22T20:17:47,827 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-09-22T20:17:47,828 or your builds will no longer be supported. 2026-09-22T20:17:47,829 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-22T20:17:47,830 ******************************************************************************** 2026-09-22T20:17:47,831 !! 2026-09-22T20:17:47,832 corresp(dist, value, root_dir) 2026-09-22T20:17:47,896 /tmp/pip-build-env-kgpk8oni/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-22T20:17:47,897 !! 2026-09-22T20:17:47,898 ******************************************************************************** 2026-09-22T20:17:47,898 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-22T20:17:47,899 License :: OSI Approved :: Apache Software License 2026-09-22T20:17:47,900 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-22T20:17:47,901 ******************************************************************************** 2026-09-22T20:17:47,902 !! 2026-09-22T20:17:47,902 dist._finalize_license_expression() 2026-09-22T20:17:47,903 /tmp/pip-build-env-kgpk8oni/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-22T20:17:47,903 !! 2026-09-22T20:17:47,904 ******************************************************************************** 2026-09-22T20:17:47,905 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-22T20:17:47,906 License :: OSI Approved :: Apache Software License 2026-09-22T20:17:47,907 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-22T20:17:47,907 ******************************************************************************** 2026-09-22T20:17:47,908 !! 2026-09-22T20:17:47,909 self._finalize_license_expression() 2026-09-22T20:17:47,910 running bdist_wheel 2026-09-22T20:17:47,922 running build 2026-09-22T20:17:47,922 running build_py 2026-09-22T20:17:47,929 creating build/lib/hitlist 2026-09-22T20:17:47,931 copying hitlist/cell_name_parser.py -> build/lib/hitlist 2026-09-22T20:17:47,934 copying hitlist/downloads.py -> build/lib/hitlist 2026-09-22T20:17:47,938 copying hitlist/cli_help.py -> build/lib/hitlist 2026-09-22T20:17:47,940 copying hitlist/bulk_proteomics.py -> build/lib/hitlist 2026-09-22T20:17:47,943 copying hitlist/__init__.py -> build/lib/hitlist 2026-09-22T20:17:47,946 copying hitlist/export.py -> build/lib/hitlist 2026-09-22T20:17:47,951 copying hitlist/genes.py -> build/lib/hitlist 2026-09-22T20:17:47,953 copying hitlist/indexer.py -> build/lib/hitlist 2026-09-22T20:17:47,956 copying hitlist/builder.py -> build/lib/hitlist 2026-09-22T20:17:47,960 copying hitlist/conditions.py -> build/lib/hitlist 2026-09-22T20:17:47,963 copying hitlist/curation.py -> build/lib/hitlist 2026-09-22T20:17:47,967 copying hitlist/proteome.py -> build/lib/hitlist 2026-09-22T20:17:47,971 copying hitlist/sample_identity.py -> build/lib/hitlist 2026-09-22T20:17:47,973 copying hitlist/samples.py -> build/lib/hitlist 2026-09-22T20:17:47,975 copying hitlist/mappings.py -> build/lib/hitlist 2026-09-22T20:17:47,978 copying hitlist/scanner.py -> build/lib/hitlist 2026-09-22T20:17:47,981 copying hitlist/curation_yaml.py -> build/lib/hitlist 2026-09-22T20:17:47,983 copying hitlist/observations.py -> build/lib/hitlist 2026-09-22T20:17:47,986 copying hitlist/version.py -> build/lib/hitlist 2026-09-22T20:17:47,988 copying hitlist/aggregate.py -> build/lib/hitlist 2026-09-22T20:17:47,990 copying hitlist/condition_categories.py -> build/lib/hitlist 2026-09-22T20:17:47,993 copying hitlist/peptide_modifications.py -> build/lib/hitlist 2026-09-22T20:17:47,995 copying hitlist/qc.py -> build/lib/hitlist 2026-09-22T20:17:47,998 copying hitlist/cli.py -> build/lib/hitlist 2026-09-22T20:17:48,002 copying hitlist/supplement.py -> build/lib/hitlist 2026-09-22T20:17:48,005 copying hitlist/apm.py -> build/lib/hitlist 2026-09-22T20:17:48,008 copying hitlist/predict.py -> build/lib/hitlist 2026-09-22T20:17:48,010 copying hitlist/report.py -> build/lib/hitlist 2026-09-22T20:17:48,013 copying hitlist/line_expression.py -> build/lib/hitlist 2026-09-22T20:17:48,015 copying hitlist/pmhc_query.py -> build/lib/hitlist 2026-09-22T20:17:48,019 creating build/lib/hitlist/data 2026-09-22T20:17:48,020 copying hitlist/data/__init__.py -> build/lib/hitlist/data 2026-09-22T20:17:48,022 creating build/lib/hitlist/data/bulk_proteomics 2026-09-22T20:17:48,024 copying hitlist/data/bulk_proteomics/__init__.py -> build/lib/hitlist/data/bulk_proteomics 2026-09-22T20:17:48,026 creating build/lib/hitlist/data/line_expression 2026-09-22T20:17:48,027 copying hitlist/data/line_expression/__init__.py -> build/lib/hitlist/data/line_expression 2026-09-22T20:17:48,029 running egg_info 2026-09-22T20:17:48,039 writing hitlist.egg-info/PKG-INFO 2026-09-22T20:17:48,045 writing dependency_links to hitlist.egg-info/dependency_links.txt 2026-09-22T20:17:48,046 writing entry points to hitlist.egg-info/entry_points.txt 2026-09-22T20:17:48,048 writing requirements to hitlist.egg-info/requires.txt 2026-09-22T20:17:48,049 writing top-level names to hitlist.egg-info/top_level.txt 2026-09-22T20:17:48,074 reading manifest file 'hitlist.egg-info/SOURCES.txt' 2026-09-22T20:17:48,082 reading manifest template 'MANIFEST.in' 2026-09-22T20:17:48,084 warning: no previously-included files found matching 'hitlist/data/bulk_proteomics/bekker_jensen_2017_peptides.csv.gz' 2026-09-22T20:17:48,086 warning: no previously-included files found matching 'hitlist/data/bulk_proteomics/bekker_jensen_2017_protein_abundance.csv.gz' 2026-09-22T20:17:48,087 warning: no previously-included files found matching 'hitlist/data/bulk_proteomics/ccle_nusinow_2020.csv.gz' 2026-09-22T20:17:48,088 warning: no previously-included files found matching 'hitlist/data/supplementary/strazar_2023_hla2.csv' 2026-09-22T20:17:48,089 warning: no previously-included files found matching 'hitlist/data/supplementary/abelin_2019_maptac_class2.csv' 2026-09-22T20:17:48,090 adding license file 'LICENSE' 2026-09-22T20:17:48,097 writing manifest file 'hitlist.egg-info/SOURCES.txt' 2026-09-22T20:17:48,111 copying hitlist/data/tissue_categories.yaml -> build/lib/hitlist/data 2026-09-22T20:17:48,113 copying hitlist/data/data_assets.yaml -> build/lib/hitlist/data 2026-09-22T20:17:48,116 copying hitlist/data/cell_lines.yaml -> build/lib/hitlist/data 2026-09-22T20:17:48,120 copying hitlist/data/supplementary.yaml -> build/lib/hitlist/data 2026-09-22T20:17:48,123 copying hitlist/data/gene_sets.yaml -> build/lib/hitlist/data 2026-09-22T20:17:48,125 copying hitlist/data/monoallelic_lines.yaml -> build/lib/hitlist/data 2026-09-22T20:17:48,128 copying hitlist/data/condition_vocabulary.yaml -> build/lib/hitlist/data 2026-09-22T20:17:48,130 copying hitlist/data/pmid_overrides.yaml -> build/lib/hitlist/data 2026-09-22T20:17:48,142 copying hitlist/data/line_expression_anchors.yaml -> build/lib/hitlist/data 2026-09-22T20:17:48,145 creating build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,146 copying hitlist/data/supplementary/shapiro_2025_hap1_b2m_ko.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,149 copying hitlist/data/supplementary/shapiro_2025_hap1_sppl3_ko.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,155 copying hitlist/data/supplementary/shapiro_2025_hap1_irf2_ko.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,158 copying hitlist/data/supplementary/shapiro_2025_hap1_ganab_ko.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,164 copying hitlist/data/supplementary/gomez_zepeda_2024_plasma.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,167 copying hitlist/data/supplementary/abelin_2019_maptac_class1.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,175 copying hitlist/data/supplementary/gomez_zepeda_2024_raji.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,193 copying hitlist/data/supplementary/shapiro_2025_hap1_pdia3_ko.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,197 copying hitlist/data/supplementary/shapiro_2025_hap1_tapbp_ko.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,201 copying hitlist/data/supplementary/shapiro_2025_hap1_tap1_ko.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,206 copying hitlist/data/supplementary/shapiro_2025_hap1_canx_ko.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,213 copying hitlist/data/supplementary/shapiro_2025_hap1_tap2_ko.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,216 copying hitlist/data/supplementary/abelin_2019_dr_tissue.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,222 copying hitlist/data/supplementary/shapiro_2025_hap1_erap1_ko.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,226 copying hitlist/data/supplementary/gomez_zepeda_2024_jy.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,238 copying hitlist/data/supplementary/gomez_zepeda_2024_skmel37.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,245 copying hitlist/data/supplementary/gomez_zepeda_2024_hela.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,251 copying hitlist/data/supplementary/shapiro_2025_hap1_calr_ko.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,258 copying hitlist/data/supplementary/shapiro_2025_hap1_wildtype.csv -> build/lib/hitlist/data/supplementary 2026-09-22T20:17:48,265 copying hitlist/data/bulk_proteomics/sources.yaml -> build/lib/hitlist/data/bulk_proteomics 2026-09-22T20:17:48,268 copying hitlist/data/line_expression/sources.yaml -> build/lib/hitlist/data/line_expression 2026-09-22T20:17:48,271 copying hitlist/data/line_expression/ensembl_gene_id_symbol.csv -> build/lib/hitlist/data/line_expression 2026-09-22T20:17:48,280 copying hitlist/data/line_expression/gm12878_encode_rnaseq_tpm.csv.gz -> build/lib/hitlist/data/line_expression 2026-09-22T20:17:48,289 creating build/lib/hitlist/data/peptide_attributions 2026-09-22T20:17:48,290 copying hitlist/data/peptide_attributions/sarkizova_2020_patient_cohort.csv -> build/lib/hitlist/data/peptide_attributions 2026-09-22T20:17:48,310 copying hitlist/data/peptide_attributions/connelley_2022_bola_a19.csv -> build/lib/hitlist/data/peptide_attributions 2026-09-22T20:17:48,337 installing to build/bdist.linux-armv7l/wheel 2026-09-22T20:17:48,337 running install 2026-09-22T20:17:48,360 running install_lib 2026-09-22T20:17:48,366 creating build/bdist.linux-armv7l/wheel 2026-09-22T20:17:48,368 creating build/bdist.linux-armv7l/wheel/hitlist 2026-09-22T20:17:48,370 copying build/lib/hitlist/cell_name_parser.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,373 copying build/lib/hitlist/downloads.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,376 copying build/lib/hitlist/cli_help.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,378 copying build/lib/hitlist/bulk_proteomics.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,381 copying build/lib/hitlist/__init__.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,383 copying build/lib/hitlist/export.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,388 copying build/lib/hitlist/genes.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,390 copying build/lib/hitlist/indexer.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,392 copying build/lib/hitlist/builder.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,396 copying build/lib/hitlist/conditions.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,399 copying build/lib/hitlist/curation.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,403 copying build/lib/hitlist/proteome.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,406 copying build/lib/hitlist/sample_identity.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,409 creating build/bdist.linux-armv7l/wheel/hitlist/data 2026-09-22T20:17:48,410 copying build/lib/hitlist/data/tissue_categories.yaml -> build/bdist.linux-armv7l/wheel/./hitlist/data 2026-09-22T20:17:48,412 copying build/lib/hitlist/data/data_assets.yaml -> build/bdist.linux-armv7l/wheel/./hitlist/data 2026-09-22T20:17:48,414 copying build/lib/hitlist/data/cell_lines.yaml -> build/bdist.linux-armv7l/wheel/./hitlist/data 2026-09-22T20:17:48,418 copying build/lib/hitlist/data/supplementary.yaml -> build/bdist.linux-armv7l/wheel/./hitlist/data 2026-09-22T20:17:48,420 creating build/bdist.linux-armv7l/wheel/hitlist/data/bulk_proteomics 2026-09-22T20:17:48,421 copying build/lib/hitlist/data/bulk_proteomics/__init__.py -> build/bdist.linux-armv7l/wheel/./hitlist/data/bulk_proteomics 2026-09-22T20:17:48,423 copying build/lib/hitlist/data/bulk_proteomics/sources.yaml -> build/bdist.linux-armv7l/wheel/./hitlist/data/bulk_proteomics 2026-09-22T20:17:48,425 copying build/lib/hitlist/data/__init__.py -> build/bdist.linux-armv7l/wheel/./hitlist/data 2026-09-22T20:17:48,426 copying build/lib/hitlist/data/gene_sets.yaml -> build/bdist.linux-armv7l/wheel/./hitlist/data 2026-09-22T20:17:48,428 copying build/lib/hitlist/data/monoallelic_lines.yaml -> build/bdist.linux-armv7l/wheel/./hitlist/data 2026-09-22T20:17:48,431 creating build/bdist.linux-armv7l/wheel/hitlist/data/peptide_attributions 2026-09-22T20:17:48,431 copying build/lib/hitlist/data/peptide_attributions/sarkizova_2020_patient_cohort.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/peptide_attributions 2026-09-22T20:17:48,453 copying build/lib/hitlist/data/peptide_attributions/connelley_2022_bola_a19.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/peptide_attributions 2026-09-22T20:17:48,455 creating build/bdist.linux-armv7l/wheel/hitlist/data/line_expression 2026-09-22T20:17:48,456 copying build/lib/hitlist/data/line_expression/ensembl_gene_id_symbol.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/line_expression 2026-09-22T20:17:48,463 copying build/lib/hitlist/data/line_expression/__init__.py -> build/bdist.linux-armv7l/wheel/./hitlist/data/line_expression 2026-09-22T20:17:48,465 copying build/lib/hitlist/data/line_expression/gm12878_encode_rnaseq_tpm.csv.gz -> build/bdist.linux-armv7l/wheel/./hitlist/data/line_expression 2026-09-22T20:17:48,472 copying build/lib/hitlist/data/line_expression/sources.yaml -> build/bdist.linux-armv7l/wheel/./hitlist/data/line_expression 2026-09-22T20:17:48,474 copying build/lib/hitlist/data/condition_vocabulary.yaml -> build/bdist.linux-armv7l/wheel/./hitlist/data 2026-09-22T20:17:48,476 copying build/lib/hitlist/data/pmid_overrides.yaml -> build/bdist.linux-armv7l/wheel/./hitlist/data 2026-09-22T20:17:48,487 creating build/bdist.linux-armv7l/wheel/hitlist/data/supplementary 2026-09-22T20:17:48,488 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_b2m_ko.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,491 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_sppl3_ko.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,496 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_irf2_ko.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,500 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_ganab_ko.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,506 copying build/lib/hitlist/data/supplementary/gomez_zepeda_2024_plasma.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,509 copying build/lib/hitlist/data/supplementary/abelin_2019_maptac_class1.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,517 copying build/lib/hitlist/data/supplementary/gomez_zepeda_2024_raji.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,534 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_pdia3_ko.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,539 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_tapbp_ko.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,543 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_tap1_ko.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,548 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_canx_ko.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,554 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_tap2_ko.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,557 copying build/lib/hitlist/data/supplementary/abelin_2019_dr_tissue.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,564 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_erap1_ko.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,569 copying build/lib/hitlist/data/supplementary/gomez_zepeda_2024_jy.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,579 copying build/lib/hitlist/data/supplementary/gomez_zepeda_2024_skmel37.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,586 copying build/lib/hitlist/data/supplementary/gomez_zepeda_2024_hela.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,594 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_calr_ko.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,600 copying build/lib/hitlist/data/supplementary/shapiro_2025_hap1_wildtype.csv -> build/bdist.linux-armv7l/wheel/./hitlist/data/supplementary 2026-09-22T20:17:48,606 copying build/lib/hitlist/data/line_expression_anchors.yaml -> build/bdist.linux-armv7l/wheel/./hitlist/data 2026-09-22T20:17:48,608 copying build/lib/hitlist/samples.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,610 copying build/lib/hitlist/mappings.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,613 copying build/lib/hitlist/scanner.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,616 copying build/lib/hitlist/curation_yaml.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,618 copying build/lib/hitlist/observations.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,621 copying build/lib/hitlist/version.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,622 copying build/lib/hitlist/aggregate.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,625 copying build/lib/hitlist/condition_categories.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,627 copying build/lib/hitlist/peptide_modifications.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,629 copying build/lib/hitlist/qc.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,632 copying build/lib/hitlist/cli.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,636 copying build/lib/hitlist/supplement.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,639 copying build/lib/hitlist/apm.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,641 copying build/lib/hitlist/predict.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,644 copying build/lib/hitlist/report.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,647 copying build/lib/hitlist/line_expression.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,650 copying build/lib/hitlist/pmhc_query.py -> build/bdist.linux-armv7l/wheel/./hitlist 2026-09-22T20:17:48,653 running install_egg_info 2026-09-22T20:17:48,658 Copying hitlist.egg-info to build/bdist.linux-armv7l/wheel/./hitlist-1.62.23-py3.11.egg-info 2026-09-22T20:17:48,671 running install_scripts 2026-09-22T20:17:48,684 creating build/bdist.linux-armv7l/wheel/hitlist-1.62.23.dist-info/WHEEL 2026-09-22T20:17:48,686 creating '/tmp/pip-wheel-ph05rx9_/.tmp-zv_aetg4/hitlist-1.62.23-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-09-22T20:17:48,690 adding 'hitlist/__init__.py' 2026-09-22T20:17:48,692 adding 'hitlist/aggregate.py' 2026-09-22T20:17:48,694 adding 'hitlist/apm.py' 2026-09-22T20:17:48,707 adding 'hitlist/builder.py' 2026-09-22T20:17:48,711 adding 'hitlist/bulk_proteomics.py' 2026-09-22T20:17:48,715 adding 'hitlist/cell_name_parser.py' 2026-09-22T20:17:48,724 adding 'hitlist/cli.py' 2026-09-22T20:17:48,727 adding 'hitlist/cli_help.py' 2026-09-22T20:17:48,729 adding 'hitlist/condition_categories.py' 2026-09-22T20:17:48,733 adding 'hitlist/conditions.py' 2026-09-22T20:17:48,753 adding 'hitlist/curation.py' 2026-09-22T20:17:48,756 adding 'hitlist/curation_yaml.py' 2026-09-22T20:17:48,763 adding 'hitlist/downloads.py' 2026-09-22T20:17:48,789 adding 'hitlist/export.py' 2026-09-22T20:17:48,792 adding 'hitlist/genes.py' 2026-09-22T20:17:48,794 adding 'hitlist/indexer.py' 2026-09-22T20:17:48,798 adding 'hitlist/line_expression.py' 2026-09-22T20:17:48,805 adding 'hitlist/mappings.py' 2026-09-22T20:17:48,812 adding 'hitlist/observations.py' 2026-09-22T20:17:48,814 adding 'hitlist/peptide_modifications.py' 2026-09-22T20:17:48,825 adding 'hitlist/pmhc_query.py' 2026-09-22T20:17:48,828 adding 'hitlist/predict.py' 2026-09-22T20:17:48,837 adding 'hitlist/proteome.py' 2026-09-22T20:17:48,845 adding 'hitlist/qc.py' 2026-09-22T20:17:48,848 adding 'hitlist/report.py' 2026-09-22T20:17:48,850 adding 'hitlist/sample_identity.py' 2026-09-22T20:17:48,852 adding 'hitlist/samples.py' 2026-09-22T20:17:48,856 adding 'hitlist/scanner.py' 2026-09-22T20:17:48,859 adding 'hitlist/supplement.py' 2026-09-22T20:17:48,860 adding 'hitlist/version.py' 2026-09-22T20:17:48,862 adding 'hitlist/data/__init__.py' 2026-09-22T20:17:48,869 adding 'hitlist/data/cell_lines.yaml' 2026-09-22T20:17:48,871 adding 'hitlist/data/condition_vocabulary.yaml' 2026-09-22T20:17:48,873 adding 'hitlist/data/data_assets.yaml' 2026-09-22T20:17:48,875 adding 'hitlist/data/gene_sets.yaml' 2026-09-22T20:17:48,877 adding 'hitlist/data/line_expression_anchors.yaml' 2026-09-22T20:17:48,878 adding 'hitlist/data/monoallelic_lines.yaml' 2026-09-22T20:17:48,925 adding 'hitlist/data/pmid_overrides.yaml' 2026-09-22T20:17:48,930 adding 'hitlist/data/supplementary.yaml' 2026-09-22T20:17:48,932 adding 'hitlist/data/tissue_categories.yaml' 2026-09-22T20:17:48,933 adding 'hitlist/data/bulk_proteomics/__init__.py' 2026-09-22T20:17:48,935 adding 'hitlist/data/bulk_proteomics/sources.yaml' 2026-09-22T20:17:48,937 adding 'hitlist/data/line_expression/__init__.py' 2026-09-22T20:17:48,969 adding 'hitlist/data/line_expression/ensembl_gene_id_symbol.csv' 2026-09-22T20:17:49,000 adding 'hitlist/data/line_expression/gm12878_encode_rnaseq_tpm.csv.gz' 2026-09-22T20:17:49,003 adding 'hitlist/data/line_expression/sources.yaml' 2026-09-22T20:17:49,005 adding 'hitlist/data/peptide_attributions/connelley_2022_bola_a19.csv' 2026-09-22T20:17:49,079 adding 'hitlist/data/peptide_attributions/sarkizova_2020_patient_cohort.csv' 2026-09-22T20:17:49,102 adding 'hitlist/data/supplementary/abelin_2019_dr_tissue.csv' 2026-09-22T20:17:49,123 adding 'hitlist/data/supplementary/abelin_2019_maptac_class1.csv' 2026-09-22T20:17:49,146 adding 'hitlist/data/supplementary/gomez_zepeda_2024_hela.csv' 2026-09-22T20:17:49,193 adding 'hitlist/data/supplementary/gomez_zepeda_2024_jy.csv' 2026-09-22T20:17:49,200 adding 'hitlist/data/supplementary/gomez_zepeda_2024_plasma.csv' 2026-09-22T20:17:49,251 adding 'hitlist/data/supplementary/gomez_zepeda_2024_raji.csv' 2026-09-22T20:17:49,281 adding 'hitlist/data/supplementary/gomez_zepeda_2024_skmel37.csv' 2026-09-22T20:17:49,285 adding 'hitlist/data/supplementary/shapiro_2025_hap1_b2m_ko.csv' 2026-09-22T20:17:49,333 adding 'hitlist/data/supplementary/shapiro_2025_hap1_calr_ko.csv' 2026-09-22T20:17:49,380 adding 'hitlist/data/supplementary/shapiro_2025_hap1_canx_ko.csv' 2026-09-22T20:17:49,406 adding 'hitlist/data/supplementary/shapiro_2025_hap1_erap1_ko.csv' 2026-09-22T20:17:49,437 adding 'hitlist/data/supplementary/shapiro_2025_hap1_ganab_ko.csv' 2026-09-22T20:17:49,452 adding 'hitlist/data/supplementary/shapiro_2025_hap1_irf2_ko.csv' 2026-09-22T20:17:49,471 adding 'hitlist/data/supplementary/shapiro_2025_hap1_pdia3_ko.csv' 2026-09-22T20:17:49,511 adding 'hitlist/data/supplementary/shapiro_2025_hap1_sppl3_ko.csv' 2026-09-22T20:17:49,536 adding 'hitlist/data/supplementary/shapiro_2025_hap1_tap1_ko.csv' 2026-09-22T20:17:49,545 adding 'hitlist/data/supplementary/shapiro_2025_hap1_tap2_ko.csv' 2026-09-22T20:17:49,557 adding 'hitlist/data/supplementary/shapiro_2025_hap1_tapbp_ko.csv' 2026-09-22T20:17:49,607 adding 'hitlist/data/supplementary/shapiro_2025_hap1_wildtype.csv' 2026-09-22T20:17:49,612 adding 'hitlist-1.62.23.dist-info/licenses/LICENSE' 2026-09-22T20:17:49,618 adding 'hitlist-1.62.23.dist-info/METADATA' 2026-09-22T20:17:49,619 adding 'hitlist-1.62.23.dist-info/WHEEL' 2026-09-22T20:17:49,620 adding 'hitlist-1.62.23.dist-info/entry_points.txt' 2026-09-22T20:17:49,621 adding 'hitlist-1.62.23.dist-info/top_level.txt' 2026-09-22T20:17:49,622 adding 'hitlist-1.62.23.dist-info/RECORD' 2026-09-22T20:17:49,647 removing build/bdist.linux-armv7l/wheel 2026-09-22T20:17:49,769 Building wheel for hitlist (pyproject.toml): finished with status 'done' 2026-09-22T20:17:49,820 Created wheel for hitlist: filename=hitlist-1.62.23-py3-none-any.whl size=2199426 sha256=1ef4d5141abf73ac41f7df06c008e34a78154ce6fedc3d9d2a57d9e4ff6759e5 2026-09-22T20:17:49,822 Stored in directory: /tmp/pip-ephem-wheel-cache-nrj_0pzo/wheels/b1/14/b1/9d1d4e115daf971c1c75e4881fe821e5c356159e3bfa8225c0 2026-09-22T20:17:49,847 Successfully built hitlist 2026-09-22T20:17:49,917 Removed build tracker: '/tmp/pip-build-tracker-yfeygjrm'