2026-09-24T02:06:36,513 Created temporary directory: /tmp/pip-ephem-wheel-cache-3_2ss8r0 2026-09-24T02:06:36,515 Created temporary directory: /tmp/pip-build-tracker-0tn8c185 2026-09-24T02:06:36,516 Initialized build tracking at /tmp/pip-build-tracker-0tn8c185 2026-09-24T02:06:36,516 Created build tracker: /tmp/pip-build-tracker-0tn8c185 2026-09-24T02:06:36,516 Entered build tracker: /tmp/pip-build-tracker-0tn8c185 2026-09-24T02:06:36,517 Created temporary directory: /tmp/pip-wheel-ogbna9fy 2026-09-24T02:06:36,520 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-24T02:06:36,522 Created temporary directory: /tmp/pip-ephem-wheel-cache-7duekl2w 2026-09-24T02:06:36,544 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-24T02:06:36,547 2 location(s) to search for versions of coralme: 2026-09-24T02:06:36,547 * https://pypi.org/simple/coralme/ 2026-09-24T02:06:36,547 * https://www.piwheels.org/simple/coralme/ 2026-09-24T02:06:36,548 Fetching project page and analyzing links: https://pypi.org/simple/coralme/ 2026-09-24T02:06:36,549 Getting page https://pypi.org/simple/coralme/ 2026-09-24T02:06:36,550 Found index url https://pypi.org/simple 2026-09-24T02:06:36,780 Fetched page https://pypi.org/simple/coralme/ as application/vnd.pypi.simple.v1+json 2026-09-24T02:06:36,791 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/b3/cd/5d6128384de97cd66728ffb9077a3a317b05284b8fc55ed2892abde04988/coralME-1.0.0-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,792 Found link https://files.pythonhosted.org/packages/31/32/3bc2eec17165d6d1ccf75a42851f2c1e54c1656e16c05c2ff70d203d9a2d/coralME-1.0.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.0 2026-09-24T02:06:36,793 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/64/d9/437302ea3967819d104b01255c506132b78fe7d6c40e9f7b5fb1fda1471b/coralME-1.0.0.post1-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,794 Found link https://files.pythonhosted.org/packages/0a/a6/69e5b9146c97f78f52ff4ae7cabce9cf6ba53af5a1437f16980d55175efb/coralme-1.0.0.post1.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.0.0.post1 2026-09-24T02:06:36,794 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/04/8b/c4dad0d0a44e9c73db1d04ad85c781aaa52b44036536b775a27af1cfd5d4/coralME-1.0.0.post2-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,796 Found link https://files.pythonhosted.org/packages/b4/1d/9ce7e27ad95f141fabe37512ae3791a24d04932d6f538494f291a9212071/coralme-1.0.0.post2.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.0.0.post2 2026-09-24T02:06:36,796 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/b9/ad/b75b4ee52cccd105f07480a024983ef9e047ba3d62580ff54cf6b968fd11/coralME-1.0.0.post3-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,797 Found link https://files.pythonhosted.org/packages/57/b5/2bf10653857fc4ac9c8ce4f4641f93e1ba667ccacdddc8c4698ef289c827/coralme-1.0.0.post3.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.0.0.post3 2026-09-24T02:06:36,798 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/4e/04/d529fcbb6f321c75110be5aee42bbf9ea2e8a48c1533991fc8520039e9cf/coralME-1.1.0-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,799 Found link https://files.pythonhosted.org/packages/ae/02/61a2270de794f05a442da6780ef4829137667292927808e2169c577a8ee2/coralme-1.1.0.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.0 2026-09-24T02:06:36,800 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/b3/02/b26931a4161c042cf9c734be57c701e5d76981ead5832796531510a5baa0/coralME-1.1.1-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,801 Found link https://files.pythonhosted.org/packages/e5/6b/9faa456a1bafe9b7e6a3f7ed85b0c863d5b2a3027b09f9e1e541d90e5d01/coralme-1.1.1.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.1 2026-09-24T02:06:36,802 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/2f/5b/580385e954d6fc42d8eac064daa33c0a694988dfc52da8fd5ca298e5d6b0/coralME-1.1.2-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,803 Found link https://files.pythonhosted.org/packages/d9/d5/f085dc517f64026bdabe8410cfc95d8bc5898cac172b3b982cec59c1e188/coralme-1.1.2.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.2 2026-09-24T02:06:36,804 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/33/71/b4cf0bf6dd4b4645c38d7b726b17542a1384a2314abee9a36b6acc35c392/coralME-1.1.3-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,804 Found link https://files.pythonhosted.org/packages/67/ac/47f0c031808a891828f3b12123ea21f050ba08bd1ec205584e640ff31fcc/coralme-1.1.3.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.3 2026-09-24T02:06:36,805 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/f6/18/b7e43d27132dceb7bf5e4d13d8957769d66b565b8e14687fed09fc4c1dd8/coralME-1.1.4-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,806 Found link https://files.pythonhosted.org/packages/c2/76/ef2eb4ecec6b7d25043b8ef022422f87b4f1abc4277841e75a6305038255/coralme-1.1.4.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.4 2026-09-24T02:06:36,807 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/34/25/6f2e739d39d35df071d2df2fb6a63f17783f3ed665b72c9d10fb7905351e/coralME-1.1.5-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,808 Found link https://files.pythonhosted.org/packages/c2/0d/52301c9c25ba738621b9cf7a8e086b59b06aaeaf79c840c8b166860639e4/coralme-1.1.5.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.5 2026-09-24T02:06:36,809 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/6b/6c/5a024da74985e9873476a19920176a01654af72b598b1d907c89f78d90c5/coralME-1.1.6-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,810 Found link https://files.pythonhosted.org/packages/96/06/89189c3ed663403e91f8327f84e25955352b5245a96fa5161f7eedb8f4b3/coralme-1.1.6.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.6 2026-09-24T02:06:36,811 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/32/6a/dfae77f81cd50687546994bb33f27ce9fe38fda570f0238e6f2339a2f175/coralME-1.1.7-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,812 Found link https://files.pythonhosted.org/packages/28/e4/b8069af59f572f85a8b33d89cd0c569844aeee8a280964edf25d032222ff/coralme-1.1.7.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.7 2026-09-24T02:06:36,812 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/de/5a/30d173d1c0e90dd186a08df34f8f4e7a8b7d3e8751b94e70a85171247d22/coralME-1.1.8-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,813 Found link https://files.pythonhosted.org/packages/0c/5b/88567312519cba67e30c9e9f9022dbae29836c86768d8b756facca23e9a5/coralme-1.1.8.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.8 2026-09-24T02:06:36,814 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/d5/8d/9b3f98c74bf48666afe24cd99f89218c553fc7ce4e6d48621db8b1f690e3/coralME-1.1.9-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,815 Found link https://files.pythonhosted.org/packages/f5/eb/8b47f9001cab3069c2bceeb9d52630790140f4aaed5c885422cbc14e7703/coralme-1.1.9.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.9 2026-09-24T02:06:36,816 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/39/e0/de4a154927536c3cee3b8582f2a06df5624d7376e58753fa54f9783aa861/coralME-1.1.10-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,817 Found link https://files.pythonhosted.org/packages/e3/59/3cfee49ca874953c018f0ff5b20c341763056a2af0e61b94852721b77a1b/coralme-1.1.10.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.10 2026-09-24T02:06:36,817 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/97/6f/7b724a9c979f9dd086137091ab0396a39479f068bddcc5dc983b7bde7661/coralME-1.1.11b0-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,818 Found link https://files.pythonhosted.org/packages/9f/61/e5f0cc289205eef447981f8aae08abacbfa9e68c174961fbd32aee69f373/coralme-1.1.11b0.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.11b0 2026-09-24T02:06:36,819 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/1b/f6/bfa563414edbeda466012779208d5f79c18b361887b8418aad92490942bf/coralME-1.1.11-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,820 Found link https://files.pythonhosted.org/packages/a1/1b/a2d103a433d17f3879aa4c2a418a8e1cb4c1f0a34567378d396dee435d5f/coralme-1.1.11.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.11 2026-09-24T02:06:36,821 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/92/d3/f5a5a0392e57a905b7312a237e1b128c4077eb86c9445d8e12a4f0fcb177/coralME-1.1.12-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,822 Found link https://files.pythonhosted.org/packages/21/26/83292611b083c6c947f47fbed76a6c7bc5419bc9333984c5f7fa1c9e5e17/coralme-1.1.12.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.1.12 2026-09-24T02:06:36,823 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/2f/65/15a246335164207adb2b624838e58d45106344baa9d1a9a698fb31d9370b/coralme-1.2.0-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,824 Found link https://files.pythonhosted.org/packages/be/2f/2cd990339a1de2de22555a3f5aca527ed4b580db63805cd95aa61ac5f835/coralme-1.2.0.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.2.0 2026-09-24T02:06:36,825 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/61/51/9067a125b063a4a50051c9328841d92e015b3c4d26b0a1340d027689d36f/coralme-1.2.1-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,826 Found link https://files.pythonhosted.org/packages/ee/dd/b26ccc39339a6f1f5662b7032a80ef6655761a4b8b7a1a71411cf360ac8b/coralme-1.2.1.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.2.1 2026-09-24T02:06:36,827 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/12/83/96acbe820dc00f99eb3e708b5a4b80736f2b5e80d9838f18280f911c512d/coralme-1.2.2-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,828 Found link https://files.pythonhosted.org/packages/cf/fd/eee6d62fadd9c3ce0962025084c5f2cfdf6ffbc679fb0d2919acea57e3e6/coralme-1.2.2.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.2.2 2026-09-24T02:06:36,830 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/30/52/416efd784181f84068175bab0fa077f5da97c0cf6fbc56ea6e613849df1e/coralme-1.2.3-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,830 Found link https://files.pythonhosted.org/packages/4a/f6/340d346dc5b4a2cf1c007f7ba745bba644cbc7640eed3b5ae131fafa2519/coralme-1.2.3.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.2.3 2026-09-24T02:06:36,831 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/e7/1b/db308dc64c35328dd50eee4623d86ff3cc321b9ae967ce4d2075aad16225/coralme-1.2.3.1-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,832 Found link https://files.pythonhosted.org/packages/dd/96/ac41c04217d595f3deadecf73273b680b877ad9fbbb063a3c8a2c3bbcc4d/coralme-1.2.3.1.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.2.3.1 2026-09-24T02:06:36,833 Skipping link: No binaries permitted for coralme: https://files.pythonhosted.org/packages/e4/02/a91b74cda9b3a30edafcebe7f984d28e44111d031672c113e49e152d6c94/coralme-1.2.4-py3-none-any.whl (from https://pypi.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:36,833 Found link https://files.pythonhosted.org/packages/8b/f8/c3ed02e30fc999114d53c92e80a495df7c689eb7550c0e09ffda8cd4db79/coralme-1.2.4.tar.gz (from https://pypi.org/simple/coralme/) (requires-python:~=3.0), version: 1.2.4 2026-09-24T02:06:36,834 Fetching project page and analyzing links: https://www.piwheels.org/simple/coralme/ 2026-09-24T02:06:36,835 Getting page https://www.piwheels.org/simple/coralme/ 2026-09-24T02:06:36,836 Found index url https://www.piwheels.org/simple 2026-09-24T02:06:37,026 Fetched page https://www.piwheels.org/simple/coralme/ as text/html 2026-09-24T02:06:37,033 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralme-1.2.3.1-py3-none-any.whl#sha256=4eb3e9c522225d3c55008e54292333807dc0f212f625befceb76f599d34e1bd6 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,034 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralme-1.2.3-py3-none-any.whl#sha256=7260e66128c952a282e7cf3dcb19c5522944831f890f7d425473e4e70e4910c8 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,035 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.12-py3-none-any.whl#sha256=b0f53e5378b351ef340db222bc5b0dae7a46364b6a127f64d13b0cdf8c2e7f19 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,035 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.11-py3-none-any.whl#sha256=1454651468535b43e02d673922354ae8ae7fda3d7cacb876d6a05f97e3ae1d57 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,036 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.11b0-py3-none-any.whl#sha256=0178148ead7fd08b495f3a64058503247983d2383e07a948e3e20e1eb6fc67d5 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,037 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.10-py3-none-any.whl#sha256=84a877aac430ca4b85d840e23edfafb97709622057dda1fb73ad04a221d66239 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,037 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.9-py3-none-any.whl#sha256=f0b1fdb6ee0d48aa1e79a30579b0ff80dc055810e8ab57ea9c3bf26b82cec04b (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,038 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.8-py3-none-any.whl#sha256=22260dae400fe43c74f17f556566416b99407957db51d5fc656f2e6ff80f8e2c (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,039 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.7-py3-none-any.whl#sha256=6eb8ef9d5b2ebc79781a17c204354e1f5d02bd6997beb9fecbe48f8030c80e7f (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,039 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.6-py3-none-any.whl#sha256=9cf2d6e667c30824135fdfec37543a9f31079acacd6941ee3b645f3addd9f411 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,039 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.5-py3-none-any.whl#sha256=80a00a96ba270b712b59d4630dba77be2ab436dbf9b5b3f1b3164977ddb87d86 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,040 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.4-py3-none-any.whl#sha256=973d68aabf012482a58a585f1873f157e7f2a5cee5cf20a3ce6de51f17562da2 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,040 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.3-py3-none-any.whl#sha256=f18580ee6bae137668754cc5e7f435a785960d7758a803bc9a1c9b8ec4428111 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,041 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.2-py3-none-any.whl#sha256=8a9dd173f177bbfe77c535fbc8b0257083e738ac38af5d983b2edb9b1c8af03d (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,041 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.1-py3-none-any.whl#sha256=0ac5801fbfd971cea3e25ca4b1fe93c4e671aa3c6124defd26edec31209a1a35 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,042 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.1.0-py3-none-any.whl#sha256=48fab225543a75001232cfa5c11c962f330f8082b8222b57b37cde40156aa73c (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,042 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.0.0.post3-py3-none-any.whl#sha256=2a7524cb2590adcaf6cafe9d0ab5f117e23be674a620bb52aee42767ce2da140 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,043 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.0.0.post2-py3-none-any.whl#sha256=3aa90c51300fda98a82676c82c521489145f64178c9efc2d3fb67daba9e06033 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,044 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.0.0.post1-py3-none-any.whl#sha256=c013e324d5a89b8680ae4f14dd2f583a419ca4093cab14d5f01c3f075eb12d95 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,044 Skipping link: No binaries permitted for coralme: https://archive1.piwheels.org/simple/coralme/coralME-1.0-py3-none-any.whl#sha256=97369c482c958763a4b73fcacba5460503c28762eb9a63b98e4a176aee42e308 (from https://www.piwheels.org/simple/coralme/) (requires-python:~=3.0) 2026-09-24T02:06:37,045 Skipping link: not a file: https://www.piwheels.org/simple/coralme/ 2026-09-24T02:06:37,046 Skipping link: not a file: https://pypi.org/simple/coralme/ 2026-09-24T02:06:37,068 Given no hashes to check 1 links for project 'coralme': discarding no candidates 2026-09-24T02:06:37,086 Collecting coralme==1.2.4 2026-09-24T02:06:37,089 Created temporary directory: /tmp/pip-unpack-2p_c9olj 2026-09-24T02:06:37,242 Downloading coralme-1.2.4.tar.gz (21.0 MB) 2026-09-24T02:06:41,718 Added coralme==1.2.4 from https://files.pythonhosted.org/packages/8b/f8/c3ed02e30fc999114d53c92e80a495df7c689eb7550c0e09ffda8cd4db79/coralme-1.2.4.tar.gz to build tracker '/tmp/pip-build-tracker-0tn8c185' 2026-09-24T02:06:41,726 Created temporary directory: /tmp/pip-build-env-9mfyz5rk 2026-09-24T02:06:41,730 Installing build dependencies: started 2026-09-24T02:06:41,731 Running command pip subprocess to install build dependencies 2026-09-24T02:06:42,861 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-09-24T02:06:43,296 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-24T02:06:43,318 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-24T02:06:45,127 Collecting setuptools>=61 2026-09-24T02:06:45,128 Obtaining dependency information for setuptools>=61 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-09-24T02:06:45,143 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-09-24T02:06:45,385 Collecting wheel 2026-09-24T02:06:45,386 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-09-24T02:06:45,400 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-09-24T02:06:45,500 Collecting versioneer[toml] 2026-09-24T02:06:45,501 Obtaining dependency information for versioneer[toml] from https://www.piwheels.org/simple/versioneer/versioneer-0.29-py3-none-any.whl.metadata 2026-09-24T02:06:45,513 Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.29-py3-none-any.whl.metadata (16 kB) 2026-09-24T02:06:45,708 Collecting packaging>=24.0 2026-09-24T02:06:45,709 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-09-24T02:06:45,722 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-09-24T02:06:45,934 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-09-24T02:06:45,956 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-24T02:06:45,970 Downloading https://www.piwheels.org/simple/versioneer/versioneer-0.29-py3-none-any.whl (46 kB) 2026-09-24T02:06:45,988 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 46.8/46.8 kB 4.2 MB/s eta 0:00:00 2026-09-24T02:06:46,057 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-24T02:06:46,091 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-09-24T02:06:46,119 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-09-24T02:06:46,145 Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.29-py3-none-any.whl (46 kB) 2026-09-24T02:06:46,220 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-24T02:06:48,990 Installing collected packages: versioneer, setuptools, packaging, wheel 2026-09-24T02:06:49,022 Creating /tmp/pip-build-env-9mfyz5rk/overlay/local/bin 2026-09-24T02:06:49,024 changing mode of /tmp/pip-build-env-9mfyz5rk/overlay/local/bin/versioneer to 755 2026-09-24T02:06:51,723 changing mode of /tmp/pip-build-env-9mfyz5rk/overlay/local/bin/wheel to 755 2026-09-24T02:06:51,754 Successfully installed packaging-26.3 setuptools-84.0.0 versioneer-0.29 wheel-0.48.0 2026-09-24T02:06:52,041 Installing build dependencies: finished with status 'done' 2026-09-24T02:06:52,051 Getting requirements to build wheel: started 2026-09-24T02:06:52,052 Running command Getting requirements to build wheel 2026-09-24T02:06:52,749 /tmp/pip-build-env-9mfyz5rk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-09-24T02:06:52,749 corresp(dist, value, root_dir) 2026-09-24T02:06:52,800 /tmp/pip-build-env-9mfyz5rk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-24T02:06:52,800 !! 2026-09-24T02:06:52,801 ******************************************************************************** 2026-09-24T02:06:52,802 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-24T02:06:52,803 License :: OSI Approved :: MIT License 2026-09-24T02:06:52,804 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-24T02:06:52,804 ******************************************************************************** 2026-09-24T02:06:52,805 !! 2026-09-24T02:06:52,806 dist._finalize_license_expression() 2026-09-24T02:06:52,807 /tmp/pip-build-env-9mfyz5rk/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-24T02:06:52,808 !! 2026-09-24T02:06:52,809 ******************************************************************************** 2026-09-24T02:06:52,809 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-24T02:06:52,811 License :: OSI Approved :: MIT License 2026-09-24T02:06:52,812 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-24T02:06:52,813 ******************************************************************************** 2026-09-24T02:06:52,814 !! 2026-09-24T02:06:52,815 self._finalize_license_expression() 2026-09-24T02:06:52,815 running egg_info 2026-09-24T02:06:52,816 writing coralME.egg-info/PKG-INFO 2026-09-24T02:06:52,819 writing dependency_links to coralME.egg-info/dependency_links.txt 2026-09-24T02:06:52,821 writing entry points to coralME.egg-info/entry_points.txt 2026-09-24T02:06:52,825 writing requirements to coralME.egg-info/requires.txt 2026-09-24T02:06:52,826 writing top-level names to coralME.egg-info/top_level.txt 2026-09-24T02:06:52,880 reading manifest file 'coralME.egg-info/SOURCES.txt' 2026-09-24T02:06:52,895 adding license file 'LICENSE' 2026-09-24T02:06:52,910 writing manifest file 'coralME.egg-info/SOURCES.txt' 2026-09-24T02:06:53,017 Getting requirements to build wheel: finished with status 'done' 2026-09-24T02:06:53,021 Created temporary directory: /tmp/pip-modern-metadata-vx7n3vic 2026-09-24T02:06:53,024 Preparing metadata (pyproject.toml): started 2026-09-24T02:06:53,025 Running command Preparing metadata (pyproject.toml) 2026-09-24T02:06:53,666 /tmp/pip-build-env-9mfyz5rk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-09-24T02:06:53,666 corresp(dist, value, root_dir) 2026-09-24T02:06:53,715 /tmp/pip-build-env-9mfyz5rk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-24T02:06:53,715 !! 2026-09-24T02:06:53,716 ******************************************************************************** 2026-09-24T02:06:53,717 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-24T02:06:53,718 License :: OSI Approved :: MIT License 2026-09-24T02:06:53,719 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-24T02:06:53,719 ******************************************************************************** 2026-09-24T02:06:53,720 !! 2026-09-24T02:06:53,720 dist._finalize_license_expression() 2026-09-24T02:06:53,721 /tmp/pip-build-env-9mfyz5rk/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-24T02:06:53,722 !! 2026-09-24T02:06:53,723 ******************************************************************************** 2026-09-24T02:06:53,723 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-24T02:06:53,724 License :: OSI Approved :: MIT License 2026-09-24T02:06:53,725 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-24T02:06:53,726 ******************************************************************************** 2026-09-24T02:06:53,726 !! 2026-09-24T02:06:53,727 self._finalize_license_expression() 2026-09-24T02:06:53,728 running dist_info 2026-09-24T02:06:53,734 creating /tmp/pip-modern-metadata-vx7n3vic/coralME.egg-info 2026-09-24T02:06:53,735 writing /tmp/pip-modern-metadata-vx7n3vic/coralME.egg-info/PKG-INFO 2026-09-24T02:06:53,739 writing dependency_links to /tmp/pip-modern-metadata-vx7n3vic/coralME.egg-info/dependency_links.txt 2026-09-24T02:06:53,741 writing entry points to /tmp/pip-modern-metadata-vx7n3vic/coralME.egg-info/entry_points.txt 2026-09-24T02:06:53,744 writing requirements to /tmp/pip-modern-metadata-vx7n3vic/coralME.egg-info/requires.txt 2026-09-24T02:06:53,745 writing top-level names to /tmp/pip-modern-metadata-vx7n3vic/coralME.egg-info/top_level.txt 2026-09-24T02:06:53,747 writing manifest file '/tmp/pip-modern-metadata-vx7n3vic/coralME.egg-info/SOURCES.txt' 2026-09-24T02:06:53,794 reading manifest file '/tmp/pip-modern-metadata-vx7n3vic/coralME.egg-info/SOURCES.txt' 2026-09-24T02:06:53,796 adding license file 'LICENSE' 2026-09-24T02:06:53,807 writing manifest file '/tmp/pip-modern-metadata-vx7n3vic/coralME.egg-info/SOURCES.txt' 2026-09-24T02:06:53,816 creating '/tmp/pip-modern-metadata-vx7n3vic/coralme-1.2.4.dist-info' 2026-09-24T02:06:53,956 Preparing metadata (pyproject.toml): finished with status 'done' 2026-09-24T02:06:53,961 Source in /tmp/pip-wheel-ogbna9fy/coralme_bccdcbcb7ef54320b2af4e691e61b864 has version 1.2.4, which satisfies requirement coralme==1.2.4 from https://files.pythonhosted.org/packages/8b/f8/c3ed02e30fc999114d53c92e80a495df7c689eb7550c0e09ffda8cd4db79/coralme-1.2.4.tar.gz 2026-09-24T02:06:53,962 Removed coralme==1.2.4 from https://files.pythonhosted.org/packages/8b/f8/c3ed02e30fc999114d53c92e80a495df7c689eb7550c0e09ffda8cd4db79/coralme-1.2.4.tar.gz from build tracker '/tmp/pip-build-tracker-0tn8c185' 2026-09-24T02:06:53,969 Created temporary directory: /tmp/pip-unpack-4bjrvqhe 2026-09-24T02:06:53,970 Building wheels for collected packages: coralme 2026-09-24T02:06:53,974 Created temporary directory: /tmp/pip-wheel-kgqkhdaq 2026-09-24T02:06:53,975 Destination directory: /tmp/pip-wheel-kgqkhdaq 2026-09-24T02:06:53,977 Building wheel for coralme (pyproject.toml): started 2026-09-24T02:06:53,979 Running command Building wheel for coralme (pyproject.toml) 2026-09-24T02:06:54,608 /tmp/pip-build-env-9mfyz5rk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsWarning: `install_requires` overwritten in `pyproject.toml` (dependencies) 2026-09-24T02:06:54,608 corresp(dist, value, root_dir) 2026-09-24T02:06:54,652 /tmp/pip-build-env-9mfyz5rk/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-24T02:06:54,653 !! 2026-09-24T02:06:54,654 ******************************************************************************** 2026-09-24T02:06:54,654 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-24T02:06:54,655 License :: OSI Approved :: MIT License 2026-09-24T02:06:54,656 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-24T02:06:54,657 ******************************************************************************** 2026-09-24T02:06:54,658 !! 2026-09-24T02:06:54,659 dist._finalize_license_expression() 2026-09-24T02:06:54,661 /tmp/pip-build-env-9mfyz5rk/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-24T02:06:54,661 !! 2026-09-24T02:06:54,662 ******************************************************************************** 2026-09-24T02:06:54,663 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-24T02:06:54,664 License :: OSI Approved :: MIT License 2026-09-24T02:06:54,665 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-24T02:06:54,665 ******************************************************************************** 2026-09-24T02:06:54,667 !! 2026-09-24T02:06:54,667 self._finalize_license_expression() 2026-09-24T02:06:54,668 running bdist_wheel 2026-09-24T02:06:54,679 running build 2026-09-24T02:06:54,680 running build_py 2026-09-24T02:06:54,688 creating build/lib/coralme 2026-09-24T02:06:54,691 copying coralme/_version.py -> build/lib/coralme 2026-09-24T02:06:54,693 copying coralme/__init__.py -> build/lib/coralme 2026-09-24T02:06:54,695 creating build/lib/coralme/util 2026-09-24T02:06:54,696 copying coralme/util/agora.py -> build/lib/coralme/util 2026-09-24T02:06:54,698 copying coralme/util/compare.py -> build/lib/coralme/util 2026-09-24T02:06:54,700 copying coralme/util/dogma.py -> build/lib/coralme/util 2026-09-24T02:06:54,703 copying coralme/util/essentiality.py -> build/lib/coralme/util 2026-09-24T02:06:54,705 copying coralme/util/building.py -> build/lib/coralme/util 2026-09-24T02:06:54,709 copying coralme/util/excel2model.py -> build/lib/coralme/util 2026-09-24T02:06:54,711 copying coralme/util/__init__.py -> build/lib/coralme/util 2026-09-24T02:06:54,713 copying coralme/util/cli.py -> build/lib/coralme/util 2026-09-24T02:06:54,716 copying coralme/util/model2excel.py -> build/lib/coralme/util 2026-09-24T02:06:54,718 copying coralme/util/massbalance.py -> build/lib/coralme/util 2026-09-24T02:06:54,720 copying coralme/util/change_model_genes.py -> build/lib/coralme/util 2026-09-24T02:06:54,722 copying coralme/util/flux_analysis.py -> build/lib/coralme/util 2026-09-24T02:06:54,725 creating build/lib/coralme/solver 2026-09-24T02:06:54,726 copying coralme/solver/__init__.py -> build/lib/coralme/solver 2026-09-24T02:06:54,728 copying coralme/solver/solver.py -> build/lib/coralme/solver 2026-09-24T02:06:54,732 creating build/lib/coralme/io 2026-09-24T02:06:54,733 copying coralme/io/pickle.py -> build/lib/coralme/io 2026-09-24T02:06:54,735 copying coralme/io/dict.py -> build/lib/coralme/io 2026-09-24T02:06:54,737 copying coralme/io/json.py -> build/lib/coralme/io 2026-09-24T02:06:54,740 copying coralme/io/__init__.py -> build/lib/coralme/io 2026-09-24T02:06:54,742 creating build/lib/coralme/core 2026-09-24T02:06:54,743 copying coralme/core/component.py -> build/lib/coralme/core 2026-09-24T02:06:54,746 copying coralme/core/optimization.py -> build/lib/coralme/core 2026-09-24T02:06:54,749 copying coralme/core/extended_classes.py -> build/lib/coralme/core 2026-09-24T02:06:54,752 copying coralme/core/diet.py -> build/lib/coralme/core 2026-09-24T02:06:54,753 copying coralme/core/reaction.py -> build/lib/coralme/core 2026-09-24T02:06:54,757 copying coralme/core/processdata.py -> build/lib/coralme/core 2026-09-24T02:06:54,760 copying coralme/core/parameters.py -> build/lib/coralme/core 2026-09-24T02:06:54,762 copying coralme/core/__init__.py -> build/lib/coralme/core 2026-09-24T02:06:54,764 copying coralme/core/model.py -> build/lib/coralme/core 2026-09-24T02:06:54,768 creating build/lib/coralme/builder 2026-09-24T02:06:54,769 copying coralme/builder/ribosome.py -> build/lib/coralme/builder 2026-09-24T02:06:54,771 copying coralme/builder/curation.py -> build/lib/coralme/builder 2026-09-24T02:06:54,775 copying coralme/builder/dna_replication.py -> build/lib/coralme/builder 2026-09-24T02:06:54,776 copying coralme/builder/gpr.py -> build/lib/coralme/builder 2026-09-24T02:06:54,778 copying coralme/builder/flat_files.py -> build/lib/coralme/builder 2026-09-24T02:06:54,781 copying coralme/builder/organism.py -> build/lib/coralme/builder 2026-09-24T02:06:54,784 copying coralme/builder/homology.py -> build/lib/coralme/builder 2026-09-24T02:06:54,786 copying coralme/builder/trna_charging.py -> build/lib/coralme/builder 2026-09-24T02:06:54,788 copying coralme/builder/formulas.py -> build/lib/coralme/builder 2026-09-24T02:06:54,790 copying coralme/builder/preprocess_inputs.py -> build/lib/coralme/builder 2026-09-24T02:06:54,793 copying coralme/builder/translocation.py -> build/lib/coralme/builder 2026-09-24T02:06:54,796 copying coralme/builder/main.py -> build/lib/coralme/builder 2026-09-24T02:06:54,802 copying coralme/builder/transcription.py -> build/lib/coralme/builder 2026-09-24T02:06:54,803 copying coralme/builder/translation.py -> build/lib/coralme/builder 2026-09-24T02:06:54,806 copying coralme/builder/dictionaries.py -> build/lib/coralme/builder 2026-09-24T02:06:54,809 copying coralme/builder/compartments.py -> build/lib/coralme/builder 2026-09-24T02:06:54,810 copying coralme/builder/__init__.py -> build/lib/coralme/builder 2026-09-24T02:06:54,812 copying coralme/builder/troubleshooting.py -> build/lib/coralme/builder 2026-09-24T02:06:54,815 copying coralme/builder/notes.py -> build/lib/coralme/builder 2026-09-24T02:06:54,817 copying coralme/builder/modifications.py -> build/lib/coralme/builder 2026-09-24T02:06:54,819 copying coralme/builder/helper_functions.py -> build/lib/coralme/builder 2026-09-24T02:06:54,850 copying coralme/util/manifest.json -> build/lib/coralme/util 2026-09-24T02:06:54,872 creating build/lib/coralme/solver/debian 2026-09-24T02:06:54,874 copying coralme/solver/debian/warmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,882 copying coralme/solver/debian/warmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,890 copying coralme/solver/debian/qwarmLP.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,901 copying coralme/solver/debian/qvaryME.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,910 copying coralme/solver/debian/warmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,921 copying coralme/solver/debian/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,924 copying coralme/solver/debian/qvaryME.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,936 copying coralme/solver/debian/qsolveME.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,942 copying coralme/solver/debian/warmLP.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,956 copying coralme/solver/debian/qwarmLP.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,966 copying coralme/solver/debian/qvaryME.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,976 copying coralme/solver/debian/qsolveME.cpython-37m-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,981 copying coralme/solver/debian/qsolveME.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,986 copying coralme/solver/debian/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,989 copying coralme/solver/debian/warmLP.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:54,999 copying coralme/solver/debian/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,002 copying coralme/solver/debian/qvaryME.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,016 copying coralme/solver/debian/qmatrixA.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,021 copying coralme/solver/debian/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,024 copying coralme/solver/debian/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,035 copying coralme/solver/debian/qvaryME.cpython-37m-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,050 copying coralme/solver/debian/qwarmLP.cpython-37m-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,060 copying coralme/solver/debian/warmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,068 copying coralme/solver/debian/qmatrixA.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,073 copying coralme/solver/debian/warmLP.cpython-37m-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,083 copying coralme/solver/debian/qmatrixA.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,087 copying coralme/solver/debian/qwarmLP.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,098 copying coralme/solver/debian/qsolveME.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,103 copying coralme/solver/debian/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,107 copying coralme/solver/debian/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,115 copying coralme/solver/debian/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,124 copying coralme/solver/debian/warmLP.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,137 copying coralme/solver/debian/qvaryME.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,152 copying coralme/solver/debian/qmatrixA.cpython-37m-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,157 copying coralme/solver/debian/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,165 copying coralme/solver/debian/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,169 copying coralme/solver/debian/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,177 copying coralme/solver/debian/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,180 copying coralme/solver/debian/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,183 copying coralme/solver/debian/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/debian 2026-09-24T02:06:55,191 creating build/lib/coralme/solver/rhel 2026-09-24T02:06:55,193 copying coralme/solver/rhel/warmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,201 copying coralme/solver/rhel/warmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,210 copying coralme/solver/rhel/warmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,218 copying coralme/solver/rhel/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,221 copying coralme/solver/rhel/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,224 copying coralme/solver/rhel/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,228 copying coralme/solver/rhel/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,231 copying coralme/solver/rhel/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,239 copying coralme/solver/rhel/warmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,247 copying coralme/solver/rhel/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,250 copying coralme/solver/rhel/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,259 copying coralme/solver/rhel/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,267 copying coralme/solver/rhel/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,276 copying coralme/solver/rhel/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,279 copying coralme/solver/rhel/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,287 copying coralme/solver/rhel/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,290 copying coralme/solver/rhel/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,294 copying coralme/solver/rhel/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel 2026-09-24T02:06:55,302 creating build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,303 copying coralme/solver/rhel-ubi9/warmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,311 copying coralme/solver/rhel-ubi9/warmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,319 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,327 copying coralme/solver/rhel-ubi9/qvaryME.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,337 copying coralme/solver/rhel-ubi9/warmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,345 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,348 copying coralme/solver/rhel-ubi9/qvaryME.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,357 copying coralme/solver/rhel-ubi9/qsolveME.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,362 copying coralme/solver/rhel-ubi9/warmLP.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,374 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,385 copying coralme/solver/rhel-ubi9/qvaryME.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,397 copying coralme/solver/rhel-ubi9/qsolveME.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,400 copying coralme/solver/rhel-ubi9/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,404 copying coralme/solver/rhel-ubi9/warmLP.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,411 copying coralme/solver/rhel-ubi9/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,415 copying coralme/solver/rhel-ubi9/qvaryME.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,426 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,431 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,435 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,446 copying coralme/solver/rhel-ubi9/warmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,456 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,460 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,463 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,477 copying coralme/solver/rhel-ubi9/qsolveME.cpython-39-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,481 copying coralme/solver/rhel-ubi9/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,484 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,496 copying coralme/solver/rhel-ubi9/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,508 copying coralme/solver/rhel-ubi9/warmLP.cpython-310-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,518 copying coralme/solver/rhel-ubi9/qvaryME.cpython-38-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,529 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,537 copying coralme/solver/rhel-ubi9/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,541 copying coralme/solver/rhel-ubi9/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,549 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,552 copying coralme/solver/rhel-ubi9/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,556 copying coralme/solver/rhel-ubi9/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/lib/coralme/solver/rhel-ubi9 2026-09-24T02:06:55,567 copying coralme/io/helper.retrocompatibility.ipynb -> build/lib/coralme/io 2026-09-24T02:06:55,571 copying coralme/io/JSONSCHEMA -> build/lib/coralme/io 2026-09-24T02:06:55,573 creating build/lib/coralme/iJL1678b-ME 2026-09-24T02:06:55,574 copying coralme/iJL1678b-ME/minimal-organism.json -> build/lib/coralme/iJL1678b-ME 2026-09-24T02:06:55,577 copying coralme/iJL1678b-ME/BarEven_subsystem_classification.csv -> build/lib/coralme/iJL1678b-ME 2026-09-24T02:06:55,579 creating build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,580 copying coralme/iJL1678b-ME/building_data/amino_acid_trna_synthetase.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,583 copying coralme/iJL1678b-ME/building_data/special_modifications.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,585 copying coralme/iJL1678b-ME/building_data/reaction_matrix.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,588 copying coralme/iJL1678b-ME/building_data/stable_RNAs.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,590 copying coralme/iJL1678b-ME/building_data/peptide_compartment_and_pathways.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,593 copying coralme/iJL1678b-ME/building_data/protein_modification.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,596 copying coralme/iJL1678b-ME/building_data/genome.gb -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,799 copying coralme/iJL1678b-ME/building_data/protein_corrections.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,801 copying coralme/iJL1678b-ME/building_data/metabolite_corrections.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,803 copying coralme/iJL1678b-ME/building_data/m_model.json -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,818 copying coralme/iJL1678b-ME/building_data/folding_chaperones.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,820 copying coralme/iJL1678b-ME/building_data/rna_modification.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,822 copying coralme/iJL1678b-ME/building_data/translocation_multipliers.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,824 copying coralme/iJL1678b-ME/building_data/excision_machinery.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,826 copying coralme/iJL1678b-ME/building_data/metabolites.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,830 copying coralme/iJL1678b-ME/building_data/rho_independent.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,832 copying coralme/iJL1678b-ME/building_data/transcription_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,834 copying coralme/iJL1678b-ME/building_data/subsystem_classification.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,836 copying coralme/iJL1678b-ME/building_data/folding_dict.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,838 copying coralme/iJL1678b-ME/building_data/keffs.json -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,847 copying coralme/iJL1678b-ME/building_data/me_metabolites.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,849 copying coralme/iJL1678b-ME/building_data/keffs.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,855 copying coralme/iJL1678b-ME/building_data/orphan_and_spont_reactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,857 copying coralme/iJL1678b-ME/building_data/elongation_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,859 copying coralme/iJL1678b-ME/building_data/subreaction_matrix.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,862 copying coralme/iJL1678b-ME/building_data/peptide_release_factors.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,864 copying coralme/iJL1678b-ME/building_data/reaction_corrections.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,866 copying coralme/iJL1678b-ME/building_data/termination_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,868 copying coralme/iJL1678b-ME/building_data/ribosome_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,870 copying coralme/iJL1678b-ME/building_data/iJO1366b.json -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,886 copying coralme/iJL1678b-ME/building_data/protein_complexes.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,890 copying coralme/iJL1678b-ME/building_data/TUs.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,894 copying coralme/iJL1678b-ME/building_data/reference_tRNAs.fna -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,968 copying coralme/iJL1678b-ME/building_data/proteins.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,972 copying coralme/iJL1678b-ME/building_data/post_transcriptional_modification_of_RNA.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,975 copying coralme/iJL1678b-ME/building_data/genes.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,982 copying coralme/iJL1678b-ME/building_data/rrna_modifications.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,985 copying coralme/iJL1678b-ME/building_data/initiation_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,987 copying coralme/iJL1678b-ME/building_data/lipid_modifications.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,989 copying coralme/iJL1678b-ME/building_data/TUs_from_biocyc.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,995 copying coralme/iJL1678b-ME/building_data/modification.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,997 copying coralme/iJL1678b-ME/building_data/special_trna_subreactions.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:55,999 copying coralme/iJL1678b-ME/building_data/enzyme_reaction_association.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:56,003 copying coralme/iJL1678b-ME/building_data/sigma_factors.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:56,005 copying coralme/iJL1678b-ME/building_data/RNAs.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:56,007 copying coralme/iJL1678b-ME/building_data/m_to_me_mets.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:56,010 copying coralme/iJL1678b-ME/building_data/cleaved_methionine.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:56,012 copying coralme/iJL1678b-ME/building_data/rna_degradosome.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:56,015 copying coralme/iJL1678b-ME/building_data/translocation_pathways.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:56,017 copying coralme/iJL1678b-ME/building_data/lipoprotein_precursors.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:56,020 copying coralme/iJL1678b-ME/building_data/trna_modification.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:56,022 copying coralme/iJL1678b-ME/building_data/generic_dict.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:56,025 copying coralme/iJL1678b-ME/building_data/ribosomal_proteins.txt -> build/lib/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:56,027 creating build/lib/coralme/licenses 2026-09-24T02:06:56,029 copying coralme/licenses/LICENSE-ecolime -> build/lib/coralme/licenses 2026-09-24T02:06:56,031 copying coralme/licenses/LICENSE-solvemepy -> build/lib/coralme/licenses 2026-09-24T02:06:56,034 copying coralme/licenses/LICENSE-cobrame -> build/lib/coralme/licenses 2026-09-24T02:06:56,036 creating build/lib/coralme/diets 2026-09-24T02:06:56,038 copying coralme/diets/AGORADiets.txt -> build/lib/coralme/diets 2026-09-24T02:06:56,041 creating build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,043 copying coralme/iJT964-ME/building_data/amino_acid_trna_synthetase.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,045 copying coralme/iJT964-ME/building_data/special_modifications.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,048 copying coralme/iJT964-ME/building_data/reaction_matrix.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,050 copying coralme/iJT964-ME/building_data/sequences.fasta -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,114 copying coralme/iJT964-ME/building_data/peptide_compartment_and_pathways.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,120 copying coralme/iJT964-ME/building_data/protein_modification.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,123 copying coralme/iJT964-ME/building_data/genome.gb -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,313 copying coralme/iJT964-ME/building_data/protein_corrections.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,315 copying coralme/iJT964-ME/building_data/metabolite_corrections.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,317 copying coralme/iJT964-ME/building_data/m_model.json -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,328 copying coralme/iJT964-ME/building_data/reaction_median_keffs.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,330 copying coralme/iJT964-ME/building_data/rna_modification.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,332 copying coralme/iJT964-ME/building_data/translocation_multipliers.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,334 copying coralme/iJT964-ME/building_data/excision_machinery.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,336 copying coralme/iJT964-ME/building_data/helper.ipynb -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,339 copying coralme/iJT964-ME/building_data/rho_independent.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,341 copying coralme/iJT964-ME/building_data/transcription_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,343 copying coralme/iJT964-ME/building_data/subsystem_classification.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,345 copying coralme/iJT964-ME/building_data/folding_dict.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,348 copying coralme/iJT964-ME/building_data/me_metabolites.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,351 copying coralme/iJT964-ME/building_data/orphan_and_spont_reactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,352 copying coralme/iJT964-ME/building_data/elongation_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,355 copying coralme/iJT964-ME/building_data/subreaction_matrix.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,357 copying coralme/iJT964-ME/building_data/peptide_release_factors.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,360 copying coralme/iJT964-ME/building_data/reaction_corrections.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,362 copying coralme/iJT964-ME/building_data/termination_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,364 copying coralme/iJT964-ME/building_data/ribosome_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,366 copying coralme/iJT964-ME/building_data/protein_complexes.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,374 copying coralme/iJT964-ME/building_data/proteins.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,382 copying coralme/iJT964-ME/building_data/post_transcriptional_modification_of_RNA.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,385 copying coralme/iJT964-ME/building_data/genes.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,391 copying coralme/iJT964-ME/building_data/initiation_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,393 copying coralme/iJT964-ME/building_data/lipid_modifications.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,395 copying coralme/iJT964-ME/building_data/TUs_from_biocyc.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,400 copying coralme/iJT964-ME/building_data/complexes.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,409 copying coralme/iJT964-ME/building_data/special_trna_subreactions.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,411 copying coralme/iJT964-ME/building_data/enzyme_reaction_association.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,414 copying coralme/iJT964-ME/building_data/sigma_factors.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,416 copying coralme/iJT964-ME/building_data/RNAs.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,419 copying coralme/iJT964-ME/building_data/cleaved_methionine.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,421 copying coralme/iJT964-ME/building_data/rna_degradosome.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,423 copying coralme/iJT964-ME/building_data/translocation_pathways.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,426 copying coralme/iJT964-ME/building_data/lipoprotein_precursors.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,428 copying coralme/iJT964-ME/building_data/generic_dict.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,430 copying coralme/iJT964-ME/building_data/ribosomal_proteins.txt -> build/lib/coralme/iJT964-ME/building_data 2026-09-24T02:06:56,438 copying coralme/builder/auto_blast.sh -> build/lib/coralme/builder 2026-09-24T02:06:56,441 copying coralme/builder/column_format.json -> build/lib/coralme/builder 2026-09-24T02:06:56,463 UPDATING build/lib/coralme/_version.py 2026-09-24T02:06:56,463 set build/lib/coralme/_version.py to '1.2.4' 2026-09-24T02:06:56,464 installing to build/bdist.linux-armv7l/wheel 2026-09-24T02:06:56,464 running install 2026-09-24T02:06:56,486 running install_lib 2026-09-24T02:06:56,491 creating build/bdist.linux-armv7l/wheel 2026-09-24T02:06:56,493 creating build/bdist.linux-armv7l/wheel/coralme 2026-09-24T02:06:56,496 creating build/bdist.linux-armv7l/wheel/coralme/util 2026-09-24T02:06:56,497 copying build/lib/coralme/util/agora.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,499 copying build/lib/coralme/util/compare.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,500 copying build/lib/coralme/util/dogma.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,503 copying build/lib/coralme/util/essentiality.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,505 copying build/lib/coralme/util/manifest.json -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,522 copying build/lib/coralme/util/building.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,526 copying build/lib/coralme/util/excel2model.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,529 copying build/lib/coralme/util/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,531 copying build/lib/coralme/util/cli.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,534 copying build/lib/coralme/util/model2excel.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,537 copying build/lib/coralme/util/massbalance.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,539 copying build/lib/coralme/util/change_model_genes.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,541 copying build/lib/coralme/util/flux_analysis.py -> build/bdist.linux-armv7l/wheel/./coralme/util 2026-09-24T02:06:56,545 creating build/bdist.linux-armv7l/wheel/coralme/solver 2026-09-24T02:06:56,548 creating build/bdist.linux-armv7l/wheel/coralme/solver/debian 2026-09-24T02:06:56,549 copying build/lib/coralme/solver/debian/warmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,559 copying build/lib/coralme/solver/debian/warmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,570 copying build/lib/coralme/solver/debian/qwarmLP.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,584 copying build/lib/coralme/solver/debian/qvaryME.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,596 copying build/lib/coralme/solver/debian/warmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,605 copying build/lib/coralme/solver/debian/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,608 copying build/lib/coralme/solver/debian/qvaryME.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,619 copying build/lib/coralme/solver/debian/qsolveME.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,626 copying build/lib/coralme/solver/debian/warmLP.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,646 copying build/lib/coralme/solver/debian/qwarmLP.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,666 copying build/lib/coralme/solver/debian/qvaryME.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,687 copying build/lib/coralme/solver/debian/qsolveME.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,694 copying build/lib/coralme/solver/debian/qsolveME.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,702 copying build/lib/coralme/solver/debian/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,706 copying build/lib/coralme/solver/debian/warmLP.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,726 copying build/lib/coralme/solver/debian/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,730 copying build/lib/coralme/solver/debian/qvaryME.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,744 copying build/lib/coralme/solver/debian/qmatrixA.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,750 copying build/lib/coralme/solver/debian/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,753 copying build/lib/coralme/solver/debian/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,765 copying build/lib/coralme/solver/debian/qvaryME.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,779 copying build/lib/coralme/solver/debian/qwarmLP.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,793 copying build/lib/coralme/solver/debian/warmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,803 copying build/lib/coralme/solver/debian/qmatrixA.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,809 copying build/lib/coralme/solver/debian/warmLP.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,822 copying build/lib/coralme/solver/debian/qmatrixA.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,827 copying build/lib/coralme/solver/debian/qwarmLP.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,838 copying build/lib/coralme/solver/debian/qsolveME.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,843 copying build/lib/coralme/solver/debian/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,847 copying build/lib/coralme/solver/debian/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,855 copying build/lib/coralme/solver/debian/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,863 copying build/lib/coralme/solver/debian/warmLP.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,872 copying build/lib/coralme/solver/debian/qvaryME.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,884 copying build/lib/coralme/solver/debian/qmatrixA.cpython-37m-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,888 copying build/lib/coralme/solver/debian/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,896 copying build/lib/coralme/solver/debian/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,899 copying build/lib/coralme/solver/debian/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,908 copying build/lib/coralme/solver/debian/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,911 copying build/lib/coralme/solver/debian/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,914 copying build/lib/coralme/solver/debian/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/debian 2026-09-24T02:06:56,922 copying build/lib/coralme/solver/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme/solver 2026-09-24T02:06:56,925 creating build/bdist.linux-armv7l/wheel/coralme/solver/rhel 2026-09-24T02:06:56,926 copying build/lib/coralme/solver/rhel/warmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,933 copying build/lib/coralme/solver/rhel/warmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,941 copying build/lib/coralme/solver/rhel/warmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,948 copying build/lib/coralme/solver/rhel/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,951 copying build/lib/coralme/solver/rhel/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,954 copying build/lib/coralme/solver/rhel/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,957 copying build/lib/coralme/solver/rhel/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,961 copying build/lib/coralme/solver/rhel/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,968 copying build/lib/coralme/solver/rhel/warmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,976 copying build/lib/coralme/solver/rhel/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,979 copying build/lib/coralme/solver/rhel/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,987 copying build/lib/coralme/solver/rhel/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:56,995 copying build/lib/coralme/solver/rhel/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:57,004 copying build/lib/coralme/solver/rhel/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:57,006 copying build/lib/coralme/solver/rhel/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:57,019 copying build/lib/coralme/solver/rhel/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:57,023 copying build/lib/coralme/solver/rhel/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:57,026 copying build/lib/coralme/solver/rhel/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel 2026-09-24T02:06:57,036 creating build/bdist.linux-armv7l/wheel/coralme/solver/rhel-ubi9 2026-09-24T02:06:57,037 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,044 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,052 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,060 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,069 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,076 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,079 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,088 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,092 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,101 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,109 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,118 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,121 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,124 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,131 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,134 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,143 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,147 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,150 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,158 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,168 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,171 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,175 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,185 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-39-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,188 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,191 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,202 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,213 copying build/lib/coralme/solver/rhel-ubi9/warmLP.cpython-310-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,223 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-38-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,234 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,244 copying build/lib/coralme/solver/rhel-ubi9/qsolveME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,247 copying build/lib/coralme/solver/rhel-ubi9/qwarmLP.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,255 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-312-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,259 copying build/lib/coralme/solver/rhel-ubi9/qmatrixA.cpython-314-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,261 copying build/lib/coralme/solver/rhel-ubi9/qvaryME.cpython-311-x86_64-linux-gnu.so -> build/bdist.linux-armv7l/wheel/./coralme/solver/rhel-ubi9 2026-09-24T02:06:57,271 copying build/lib/coralme/solver/solver.py -> build/bdist.linux-armv7l/wheel/./coralme/solver 2026-09-24T02:06:57,275 creating build/bdist.linux-armv7l/wheel/coralme/io 2026-09-24T02:06:57,276 copying build/lib/coralme/io/pickle.py -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-09-24T02:06:57,278 copying build/lib/coralme/io/helper.retrocompatibility.ipynb -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-09-24T02:06:57,280 copying build/lib/coralme/io/dict.py -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-09-24T02:06:57,282 copying build/lib/coralme/io/json.py -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-09-24T02:06:57,285 copying build/lib/coralme/io/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-09-24T02:06:57,287 copying build/lib/coralme/io/JSONSCHEMA -> build/bdist.linux-armv7l/wheel/./coralme/io 2026-09-24T02:06:57,289 creating build/bdist.linux-armv7l/wheel/coralme/iJL1678b-ME 2026-09-24T02:06:57,290 copying build/lib/coralme/iJL1678b-ME/minimal-organism.json -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME 2026-09-24T02:06:57,293 creating build/bdist.linux-armv7l/wheel/coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,294 copying build/lib/coralme/iJL1678b-ME/building_data/amino_acid_trna_synthetase.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,296 copying build/lib/coralme/iJL1678b-ME/building_data/special_modifications.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,298 copying build/lib/coralme/iJL1678b-ME/building_data/reaction_matrix.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,301 copying build/lib/coralme/iJL1678b-ME/building_data/stable_RNAs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,302 copying build/lib/coralme/iJL1678b-ME/building_data/peptide_compartment_and_pathways.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,305 copying build/lib/coralme/iJL1678b-ME/building_data/protein_modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,308 copying build/lib/coralme/iJL1678b-ME/building_data/genome.gb -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,526 copying build/lib/coralme/iJL1678b-ME/building_data/protein_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,528 copying build/lib/coralme/iJL1678b-ME/building_data/metabolite_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,530 copying build/lib/coralme/iJL1678b-ME/building_data/m_model.json -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,545 copying build/lib/coralme/iJL1678b-ME/building_data/folding_chaperones.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,547 copying build/lib/coralme/iJL1678b-ME/building_data/rna_modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,549 copying build/lib/coralme/iJL1678b-ME/building_data/translocation_multipliers.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,551 copying build/lib/coralme/iJL1678b-ME/building_data/excision_machinery.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,552 copying build/lib/coralme/iJL1678b-ME/building_data/metabolites.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,555 copying build/lib/coralme/iJL1678b-ME/building_data/rho_independent.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,557 copying build/lib/coralme/iJL1678b-ME/building_data/transcription_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,559 copying build/lib/coralme/iJL1678b-ME/building_data/subsystem_classification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,560 copying build/lib/coralme/iJL1678b-ME/building_data/folding_dict.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,562 copying build/lib/coralme/iJL1678b-ME/building_data/keffs.json -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,570 copying build/lib/coralme/iJL1678b-ME/building_data/me_metabolites.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,572 copying build/lib/coralme/iJL1678b-ME/building_data/keffs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,578 copying build/lib/coralme/iJL1678b-ME/building_data/orphan_and_spont_reactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,580 copying build/lib/coralme/iJL1678b-ME/building_data/elongation_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,582 copying build/lib/coralme/iJL1678b-ME/building_data/subreaction_matrix.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,584 copying build/lib/coralme/iJL1678b-ME/building_data/peptide_release_factors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,586 copying build/lib/coralme/iJL1678b-ME/building_data/reaction_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,588 copying build/lib/coralme/iJL1678b-ME/building_data/termination_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,589 copying build/lib/coralme/iJL1678b-ME/building_data/ribosome_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,591 copying build/lib/coralme/iJL1678b-ME/building_data/iJO1366b.json -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,607 copying build/lib/coralme/iJL1678b-ME/building_data/protein_complexes.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,611 copying build/lib/coralme/iJL1678b-ME/building_data/TUs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,614 copying build/lib/coralme/iJL1678b-ME/building_data/reference_tRNAs.fna -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,686 copying build/lib/coralme/iJL1678b-ME/building_data/proteins.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,689 copying build/lib/coralme/iJL1678b-ME/building_data/post_transcriptional_modification_of_RNA.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,691 copying build/lib/coralme/iJL1678b-ME/building_data/genes.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,698 copying build/lib/coralme/iJL1678b-ME/building_data/rrna_modifications.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,700 copying build/lib/coralme/iJL1678b-ME/building_data/initiation_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,701 copying build/lib/coralme/iJL1678b-ME/building_data/lipid_modifications.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,703 copying build/lib/coralme/iJL1678b-ME/building_data/TUs_from_biocyc.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,708 copying build/lib/coralme/iJL1678b-ME/building_data/modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,710 copying build/lib/coralme/iJL1678b-ME/building_data/special_trna_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,712 copying build/lib/coralme/iJL1678b-ME/building_data/enzyme_reaction_association.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,715 copying build/lib/coralme/iJL1678b-ME/building_data/sigma_factors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,717 copying build/lib/coralme/iJL1678b-ME/building_data/RNAs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,720 copying build/lib/coralme/iJL1678b-ME/building_data/m_to_me_mets.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,722 copying build/lib/coralme/iJL1678b-ME/building_data/cleaved_methionine.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,724 copying build/lib/coralme/iJL1678b-ME/building_data/rna_degradosome.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,727 copying build/lib/coralme/iJL1678b-ME/building_data/translocation_pathways.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,729 copying build/lib/coralme/iJL1678b-ME/building_data/lipoprotein_precursors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,731 copying build/lib/coralme/iJL1678b-ME/building_data/trna_modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,733 copying build/lib/coralme/iJL1678b-ME/building_data/generic_dict.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,734 copying build/lib/coralme/iJL1678b-ME/building_data/ribosomal_proteins.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME/building_data 2026-09-24T02:06:57,736 copying build/lib/coralme/iJL1678b-ME/BarEven_subsystem_classification.csv -> build/bdist.linux-armv7l/wheel/./coralme/iJL1678b-ME 2026-09-24T02:06:57,739 creating build/bdist.linux-armv7l/wheel/coralme/licenses 2026-09-24T02:06:57,740 copying build/lib/coralme/licenses/LICENSE-ecolime -> build/bdist.linux-armv7l/wheel/./coralme/licenses 2026-09-24T02:06:57,742 copying build/lib/coralme/licenses/LICENSE-solvemepy -> build/bdist.linux-armv7l/wheel/./coralme/licenses 2026-09-24T02:06:57,744 copying build/lib/coralme/licenses/LICENSE-cobrame -> build/bdist.linux-armv7l/wheel/./coralme/licenses 2026-09-24T02:06:57,747 creating build/bdist.linux-armv7l/wheel/coralme/diets 2026-09-24T02:06:57,748 copying build/lib/coralme/diets/AGORADiets.txt -> build/bdist.linux-armv7l/wheel/./coralme/diets 2026-09-24T02:06:57,750 copying build/lib/coralme/_version.py -> build/bdist.linux-armv7l/wheel/./coralme 2026-09-24T02:06:57,752 copying build/lib/coralme/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme 2026-09-24T02:06:57,754 creating build/bdist.linux-armv7l/wheel/coralme/iJT964-ME 2026-09-24T02:06:57,757 creating build/bdist.linux-armv7l/wheel/coralme/iJT964-ME/building_data 2026-09-24T02:06:57,758 copying build/lib/coralme/iJT964-ME/building_data/amino_acid_trna_synthetase.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:57,760 copying build/lib/coralme/iJT964-ME/building_data/special_modifications.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:57,762 copying build/lib/coralme/iJT964-ME/building_data/reaction_matrix.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:57,764 copying build/lib/coralme/iJT964-ME/building_data/sequences.fasta -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:57,842 copying build/lib/coralme/iJT964-ME/building_data/peptide_compartment_and_pathways.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:57,847 copying build/lib/coralme/iJT964-ME/building_data/protein_modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:57,850 copying build/lib/coralme/iJT964-ME/building_data/genome.gb -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,035 copying build/lib/coralme/iJT964-ME/building_data/protein_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,037 copying build/lib/coralme/iJT964-ME/building_data/metabolite_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,039 copying build/lib/coralme/iJT964-ME/building_data/m_model.json -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,048 copying build/lib/coralme/iJT964-ME/building_data/reaction_median_keffs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,050 copying build/lib/coralme/iJT964-ME/building_data/rna_modification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,052 copying build/lib/coralme/iJT964-ME/building_data/translocation_multipliers.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,054 copying build/lib/coralme/iJT964-ME/building_data/excision_machinery.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,056 copying build/lib/coralme/iJT964-ME/building_data/helper.ipynb -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,058 copying build/lib/coralme/iJT964-ME/building_data/rho_independent.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,059 copying build/lib/coralme/iJT964-ME/building_data/transcription_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,061 copying build/lib/coralme/iJT964-ME/building_data/subsystem_classification.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,063 copying build/lib/coralme/iJT964-ME/building_data/folding_dict.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,064 copying build/lib/coralme/iJT964-ME/building_data/me_metabolites.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,067 copying build/lib/coralme/iJT964-ME/building_data/orphan_and_spont_reactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,068 copying build/lib/coralme/iJT964-ME/building_data/elongation_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,070 copying build/lib/coralme/iJT964-ME/building_data/subreaction_matrix.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,072 copying build/lib/coralme/iJT964-ME/building_data/peptide_release_factors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,074 copying build/lib/coralme/iJT964-ME/building_data/reaction_corrections.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,076 copying build/lib/coralme/iJT964-ME/building_data/termination_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,078 copying build/lib/coralme/iJT964-ME/building_data/ribosome_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,079 copying build/lib/coralme/iJT964-ME/building_data/protein_complexes.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,088 copying build/lib/coralme/iJT964-ME/building_data/proteins.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,096 copying build/lib/coralme/iJT964-ME/building_data/post_transcriptional_modification_of_RNA.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,098 copying build/lib/coralme/iJT964-ME/building_data/genes.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,103 copying build/lib/coralme/iJT964-ME/building_data/initiation_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,105 copying build/lib/coralme/iJT964-ME/building_data/lipid_modifications.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,107 copying build/lib/coralme/iJT964-ME/building_data/TUs_from_biocyc.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,112 copying build/lib/coralme/iJT964-ME/building_data/complexes.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,119 copying build/lib/coralme/iJT964-ME/building_data/special_trna_subreactions.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,121 copying build/lib/coralme/iJT964-ME/building_data/enzyme_reaction_association.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,124 copying build/lib/coralme/iJT964-ME/building_data/sigma_factors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,126 copying build/lib/coralme/iJT964-ME/building_data/RNAs.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,129 copying build/lib/coralme/iJT964-ME/building_data/cleaved_methionine.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,130 copying build/lib/coralme/iJT964-ME/building_data/rna_degradosome.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,132 copying build/lib/coralme/iJT964-ME/building_data/translocation_pathways.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,134 copying build/lib/coralme/iJT964-ME/building_data/lipoprotein_precursors.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,136 copying build/lib/coralme/iJT964-ME/building_data/generic_dict.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,138 copying build/lib/coralme/iJT964-ME/building_data/ribosomal_proteins.txt -> build/bdist.linux-armv7l/wheel/./coralme/iJT964-ME/building_data 2026-09-24T02:06:58,140 creating build/bdist.linux-armv7l/wheel/coralme/core 2026-09-24T02:06:58,141 copying build/lib/coralme/core/component.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-09-24T02:06:58,144 copying build/lib/coralme/core/optimization.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-09-24T02:06:58,146 copying build/lib/coralme/core/extended_classes.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-09-24T02:06:58,149 copying build/lib/coralme/core/diet.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-09-24T02:06:58,151 copying build/lib/coralme/core/reaction.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-09-24T02:06:58,154 copying build/lib/coralme/core/processdata.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-09-24T02:06:58,158 copying build/lib/coralme/core/parameters.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-09-24T02:06:58,160 copying build/lib/coralme/core/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-09-24T02:06:58,161 copying build/lib/coralme/core/model.py -> build/bdist.linux-armv7l/wheel/./coralme/core 2026-09-24T02:06:58,165 creating build/bdist.linux-armv7l/wheel/coralme/builder 2026-09-24T02:06:58,166 copying build/lib/coralme/builder/ribosome.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,169 copying build/lib/coralme/builder/curation.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,172 copying build/lib/coralme/builder/dna_replication.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,174 copying build/lib/coralme/builder/gpr.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,176 copying build/lib/coralme/builder/flat_files.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,179 copying build/lib/coralme/builder/organism.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,183 copying build/lib/coralme/builder/homology.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,185 copying build/lib/coralme/builder/auto_blast.sh -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,187 copying build/lib/coralme/builder/trna_charging.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,189 copying build/lib/coralme/builder/formulas.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,192 copying build/lib/coralme/builder/column_format.json -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,194 copying build/lib/coralme/builder/preprocess_inputs.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,197 copying build/lib/coralme/builder/translocation.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,199 copying build/lib/coralme/builder/main.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,203 copying build/lib/coralme/builder/transcription.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,205 copying build/lib/coralme/builder/translation.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,207 copying build/lib/coralme/builder/dictionaries.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,209 copying build/lib/coralme/builder/compartments.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,211 copying build/lib/coralme/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,213 copying build/lib/coralme/builder/troubleshooting.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,215 copying build/lib/coralme/builder/notes.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,217 copying build/lib/coralme/builder/modifications.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,219 copying build/lib/coralme/builder/helper_functions.py -> build/bdist.linux-armv7l/wheel/./coralme/builder 2026-09-24T02:06:58,221 running install_egg_info 2026-09-24T02:06:58,227 running egg_info 2026-09-24T02:06:58,233 writing coralME.egg-info/PKG-INFO 2026-09-24T02:06:58,236 writing dependency_links to coralME.egg-info/dependency_links.txt 2026-09-24T02:06:58,237 writing entry points to coralME.egg-info/entry_points.txt 2026-09-24T02:06:58,241 writing requirements to coralME.egg-info/requires.txt 2026-09-24T02:06:58,242 writing top-level names to coralME.egg-info/top_level.txt 2026-09-24T02:06:58,284 reading manifest file 'coralME.egg-info/SOURCES.txt' 2026-09-24T02:06:58,299 adding license file 'LICENSE' 2026-09-24T02:06:58,313 writing manifest file 'coralME.egg-info/SOURCES.txt' 2026-09-24T02:06:58,322 Copying coralME.egg-info to build/bdist.linux-armv7l/wheel/./coralME-1.2.4-py3.11.egg-info 2026-09-24T02:06:58,336 running install_scripts 2026-09-24T02:06:58,349 creating build/bdist.linux-armv7l/wheel/coralme-1.2.4.dist-info/WHEEL 2026-09-24T02:06:58,353 creating '/tmp/pip-wheel-kgqkhdaq/.tmp-hhz9k1mq/coralme-1.2.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-09-24T02:06:58,356 adding 'coralme/__init__.py' 2026-09-24T02:06:58,357 adding 'coralme/_version.py' 2026-09-24T02:06:58,359 adding 'coralme/builder/__init__.py' 2026-09-24T02:06:58,361 adding 'coralme/builder/auto_blast.sh' 2026-09-24T02:06:58,362 adding 'coralme/builder/column_format.json' 2026-09-24T02:06:58,364 adding 'coralme/builder/compartments.py' 2026-09-24T02:06:58,368 adding 'coralme/builder/curation.py' 2026-09-24T02:06:58,372 adding 'coralme/builder/dictionaries.py' 2026-09-24T02:06:58,373 adding 'coralme/builder/dna_replication.py' 2026-09-24T02:06:58,376 adding 'coralme/builder/flat_files.py' 2026-09-24T02:06:58,377 adding 'coralme/builder/formulas.py' 2026-09-24T02:06:58,379 adding 'coralme/builder/gpr.py' 2026-09-24T02:06:58,382 adding 'coralme/builder/helper_functions.py' 2026-09-24T02:06:58,384 adding 'coralme/builder/homology.py' 2026-09-24T02:06:58,404 adding 'coralme/builder/main.py' 2026-09-24T02:06:58,407 adding 'coralme/builder/modifications.py' 2026-09-24T02:06:58,408 adding 'coralme/builder/notes.py' 2026-09-24T02:06:58,420 adding 'coralme/builder/organism.py' 2026-09-24T02:06:58,427 adding 'coralme/builder/preprocess_inputs.py' 2026-09-24T02:06:58,429 adding 'coralme/builder/ribosome.py' 2026-09-24T02:06:58,430 adding 'coralme/builder/transcription.py' 2026-09-24T02:06:58,432 adding 'coralme/builder/translation.py' 2026-09-24T02:06:58,433 adding 'coralme/builder/translocation.py' 2026-09-24T02:06:58,435 adding 'coralme/builder/trna_charging.py' 2026-09-24T02:06:58,437 adding 'coralme/builder/troubleshooting.py' 2026-09-24T02:06:58,439 adding 'coralme/core/__init__.py' 2026-09-24T02:06:58,441 adding 'coralme/core/component.py' 2026-09-24T02:06:58,442 adding 'coralme/core/diet.py' 2026-09-24T02:06:58,445 adding 'coralme/core/extended_classes.py' 2026-09-24T02:06:58,454 adding 'coralme/core/model.py' 2026-09-24T02:06:58,458 adding 'coralme/core/optimization.py' 2026-09-24T02:06:58,461 adding 'coralme/core/parameters.py' 2026-09-24T02:06:58,469 adding 'coralme/core/processdata.py' 2026-09-24T02:06:58,479 adding 'coralme/core/reaction.py' 2026-09-24T02:06:58,482 adding 'coralme/diets/AGORADiets.txt' 2026-09-24T02:06:58,486 adding 'coralme/iJL1678b-ME/BarEven_subsystem_classification.csv' 2026-09-24T02:06:58,487 adding 'coralme/iJL1678b-ME/minimal-organism.json' 2026-09-24T02:06:58,490 adding 'coralme/iJL1678b-ME/building_data/RNAs.txt' 2026-09-24T02:06:58,508 adding 'coralme/iJL1678b-ME/building_data/TUs.txt' 2026-09-24T02:06:58,528 adding 'coralme/iJL1678b-ME/building_data/TUs_from_biocyc.txt' 2026-09-24T02:06:58,530 adding 'coralme/iJL1678b-ME/building_data/amino_acid_trna_synthetase.txt' 2026-09-24T02:06:58,532 adding 'coralme/iJL1678b-ME/building_data/cleaved_methionine.txt' 2026-09-24T02:06:58,533 adding 'coralme/iJL1678b-ME/building_data/elongation_subreactions.txt' 2026-09-24T02:06:58,542 adding 'coralme/iJL1678b-ME/building_data/enzyme_reaction_association.txt' 2026-09-24T02:06:58,543 adding 'coralme/iJL1678b-ME/building_data/excision_machinery.txt' 2026-09-24T02:06:58,545 adding 'coralme/iJL1678b-ME/building_data/folding_chaperones.txt' 2026-09-24T02:06:58,546 adding 'coralme/iJL1678b-ME/building_data/folding_dict.txt' 2026-09-24T02:06:58,547 adding 'coralme/iJL1678b-ME/building_data/generic_dict.txt' 2026-09-24T02:06:58,601 adding 'coralme/iJL1678b-ME/building_data/genes.txt' 2026-09-24T02:07:02,759 adding 'coralme/iJL1678b-ME/building_data/genome.gb' 2026-09-24T02:07:02,889 adding 'coralme/iJL1678b-ME/building_data/iJO1366b.json' 2026-09-24T02:07:02,896 adding 'coralme/iJL1678b-ME/building_data/initiation_subreactions.txt' 2026-09-24T02:07:02,921 adding 'coralme/iJL1678b-ME/building_data/keffs.json' 2026-09-24T02:07:02,946 adding 'coralme/iJL1678b-ME/building_data/keffs.txt' 2026-09-24T02:07:02,949 adding 'coralme/iJL1678b-ME/building_data/lipid_modifications.txt' 2026-09-24T02:07:02,950 adding 'coralme/iJL1678b-ME/building_data/lipoprotein_precursors.txt' 2026-09-24T02:07:03,001 adding 'coralme/iJL1678b-ME/building_data/m_model.json' 2026-09-24T02:07:03,008 adding 'coralme/iJL1678b-ME/building_data/m_to_me_mets.txt' 2026-09-24T02:07:03,009 adding 'coralme/iJL1678b-ME/building_data/me_metabolites.txt' 2026-09-24T02:07:03,010 adding 'coralme/iJL1678b-ME/building_data/metabolite_corrections.txt' 2026-09-24T02:07:03,018 adding 'coralme/iJL1678b-ME/building_data/metabolites.txt' 2026-09-24T02:07:03,019 adding 'coralme/iJL1678b-ME/building_data/modification.txt' 2026-09-24T02:07:03,021 adding 'coralme/iJL1678b-ME/building_data/orphan_and_spont_reactions.txt' 2026-09-24T02:07:03,023 adding 'coralme/iJL1678b-ME/building_data/peptide_compartment_and_pathways.txt' 2026-09-24T02:07:03,025 adding 'coralme/iJL1678b-ME/building_data/peptide_release_factors.txt' 2026-09-24T02:07:03,027 adding 'coralme/iJL1678b-ME/building_data/post_transcriptional_modification_of_RNA.txt' 2026-09-24T02:07:03,035 adding 'coralme/iJL1678b-ME/building_data/protein_complexes.txt' 2026-09-24T02:07:03,036 adding 'coralme/iJL1678b-ME/building_data/protein_corrections.txt' 2026-09-24T02:07:03,041 adding 'coralme/iJL1678b-ME/building_data/protein_modification.txt' 2026-09-24T02:07:03,049 adding 'coralme/iJL1678b-ME/building_data/proteins.txt' 2026-09-24T02:07:03,051 adding 'coralme/iJL1678b-ME/building_data/reaction_corrections.txt' 2026-09-24T02:07:03,055 adding 'coralme/iJL1678b-ME/building_data/reaction_matrix.txt' 2026-09-24T02:07:05,621 adding 'coralme/iJL1678b-ME/building_data/reference_tRNAs.fna' 2026-09-24T02:07:05,652 adding 'coralme/iJL1678b-ME/building_data/rho_independent.txt' 2026-09-24T02:07:05,654 adding 'coralme/iJL1678b-ME/building_data/ribosomal_proteins.txt' 2026-09-24T02:07:05,655 adding 'coralme/iJL1678b-ME/building_data/ribosome_subreactions.txt' 2026-09-24T02:07:05,656 adding 'coralme/iJL1678b-ME/building_data/rna_degradosome.txt' 2026-09-24T02:07:05,657 adding 'coralme/iJL1678b-ME/building_data/rna_modification.txt' 2026-09-24T02:07:05,659 adding 'coralme/iJL1678b-ME/building_data/rrna_modifications.txt' 2026-09-24T02:07:05,660 adding 'coralme/iJL1678b-ME/building_data/sigma_factors.txt' 2026-09-24T02:07:05,661 adding 'coralme/iJL1678b-ME/building_data/special_modifications.txt' 2026-09-24T02:07:05,663 adding 'coralme/iJL1678b-ME/building_data/special_trna_subreactions.txt' 2026-09-24T02:07:05,664 adding 'coralme/iJL1678b-ME/building_data/stable_RNAs.txt' 2026-09-24T02:07:05,666 adding 'coralme/iJL1678b-ME/building_data/subreaction_matrix.txt' 2026-09-24T02:07:05,667 adding 'coralme/iJL1678b-ME/building_data/subsystem_classification.txt' 2026-09-24T02:07:05,668 adding 'coralme/iJL1678b-ME/building_data/termination_subreactions.txt' 2026-09-24T02:07:05,670 adding 'coralme/iJL1678b-ME/building_data/transcription_subreactions.txt' 2026-09-24T02:07:05,671 adding 'coralme/iJL1678b-ME/building_data/translocation_multipliers.txt' 2026-09-24T02:07:05,672 adding 'coralme/iJL1678b-ME/building_data/translocation_pathways.txt' 2026-09-24T02:07:05,674 adding 'coralme/iJL1678b-ME/building_data/trna_modification.txt' 2026-09-24T02:07:05,677 adding 'coralme/iJT964-ME/building_data/RNAs.txt' 2026-09-24T02:07:05,692 adding 'coralme/iJT964-ME/building_data/TUs_from_biocyc.txt' 2026-09-24T02:07:05,695 adding 'coralme/iJT964-ME/building_data/amino_acid_trna_synthetase.txt' 2026-09-24T02:07:05,696 adding 'coralme/iJT964-ME/building_data/cleaved_methionine.txt' 2026-09-24T02:07:05,738 adding 'coralme/iJT964-ME/building_data/complexes.txt' 2026-09-24T02:07:05,741 adding 'coralme/iJT964-ME/building_data/elongation_subreactions.txt' 2026-09-24T02:07:05,745 adding 'coralme/iJT964-ME/building_data/enzyme_reaction_association.txt' 2026-09-24T02:07:05,747 adding 'coralme/iJT964-ME/building_data/excision_machinery.txt' 2026-09-24T02:07:05,748 adding 'coralme/iJT964-ME/building_data/folding_dict.txt' 2026-09-24T02:07:05,749 adding 'coralme/iJT964-ME/building_data/generic_dict.txt' 2026-09-24T02:07:05,792 adding 'coralme/iJT964-ME/building_data/genes.txt' 2026-09-24T02:07:09,523 adding 'coralme/iJT964-ME/building_data/genome.gb' 2026-09-24T02:07:09,600 adding 'coralme/iJT964-ME/building_data/helper.ipynb' 2026-09-24T02:07:09,601 adding 'coralme/iJT964-ME/building_data/initiation_subreactions.txt' 2026-09-24T02:07:09,602 adding 'coralme/iJT964-ME/building_data/lipid_modifications.txt' 2026-09-24T02:07:09,603 adding 'coralme/iJT964-ME/building_data/lipoprotein_precursors.txt' 2026-09-24T02:07:09,633 adding 'coralme/iJT964-ME/building_data/m_model.json' 2026-09-24T02:07:09,638 adding 'coralme/iJT964-ME/building_data/me_metabolites.txt' 2026-09-24T02:07:09,639 adding 'coralme/iJT964-ME/building_data/metabolite_corrections.txt' 2026-09-24T02:07:09,640 adding 'coralme/iJT964-ME/building_data/orphan_and_spont_reactions.txt' 2026-09-24T02:07:09,647 adding 'coralme/iJT964-ME/building_data/peptide_compartment_and_pathways.txt' 2026-09-24T02:07:09,649 adding 'coralme/iJT964-ME/building_data/peptide_release_factors.txt' 2026-09-24T02:07:09,650 adding 'coralme/iJT964-ME/building_data/post_transcriptional_modification_of_RNA.txt' 2026-09-24T02:07:09,692 adding 'coralme/iJT964-ME/building_data/protein_complexes.txt' 2026-09-24T02:07:09,696 adding 'coralme/iJT964-ME/building_data/protein_corrections.txt' 2026-09-24T02:07:09,699 adding 'coralme/iJT964-ME/building_data/protein_modification.txt' 2026-09-24T02:07:09,753 adding 'coralme/iJT964-ME/building_data/proteins.txt' 2026-09-24T02:07:09,756 adding 'coralme/iJT964-ME/building_data/reaction_corrections.txt' 2026-09-24T02:07:09,758 adding 'coralme/iJT964-ME/building_data/reaction_matrix.txt' 2026-09-24T02:07:09,760 adding 'coralme/iJT964-ME/building_data/reaction_median_keffs.txt' 2026-09-24T02:07:09,761 adding 'coralme/iJT964-ME/building_data/rho_independent.txt' 2026-09-24T02:07:09,762 adding 'coralme/iJT964-ME/building_data/ribosomal_proteins.txt' 2026-09-24T02:07:09,763 adding 'coralme/iJT964-ME/building_data/ribosome_subreactions.txt' 2026-09-24T02:07:09,764 adding 'coralme/iJT964-ME/building_data/rna_degradosome.txt' 2026-09-24T02:07:09,765 adding 'coralme/iJT964-ME/building_data/rna_modification.txt' 2026-09-24T02:07:11,980 adding 'coralme/iJT964-ME/building_data/sequences.fasta' 2026-09-24T02:07:12,008 adding 'coralme/iJT964-ME/building_data/sigma_factors.txt' 2026-09-24T02:07:12,009 adding 'coralme/iJT964-ME/building_data/special_modifications.txt' 2026-09-24T02:07:12,010 adding 'coralme/iJT964-ME/building_data/special_trna_subreactions.txt' 2026-09-24T02:07:12,012 adding 'coralme/iJT964-ME/building_data/subreaction_matrix.txt' 2026-09-24T02:07:12,013 adding 'coralme/iJT964-ME/building_data/subsystem_classification.txt' 2026-09-24T02:07:12,015 adding 'coralme/iJT964-ME/building_data/termination_subreactions.txt' 2026-09-24T02:07:12,016 adding 'coralme/iJT964-ME/building_data/transcription_subreactions.txt' 2026-09-24T02:07:12,017 adding 'coralme/iJT964-ME/building_data/translocation_multipliers.txt' 2026-09-24T02:07:12,019 adding 'coralme/iJT964-ME/building_data/translocation_pathways.txt' 2026-09-24T02:07:12,021 adding 'coralme/io/JSONSCHEMA' 2026-09-24T02:07:12,022 adding 'coralme/io/__init__.py' 2026-09-24T02:07:12,025 adding 'coralme/io/dict.py' 2026-09-24T02:07:12,026 adding 'coralme/io/helper.retrocompatibility.ipynb' 2026-09-24T02:07:12,028 adding 'coralme/io/json.py' 2026-09-24T02:07:12,029 adding 'coralme/io/pickle.py' 2026-09-24T02:07:12,031 adding 'coralme/licenses/LICENSE-cobrame' 2026-09-24T02:07:12,032 adding 'coralme/licenses/LICENSE-ecolime' 2026-09-24T02:07:12,034 adding 'coralme/licenses/LICENSE-solvemepy' 2026-09-24T02:07:12,035 adding 'coralme/solver/__init__.py' 2026-09-24T02:07:12,038 adding 'coralme/solver/solver.py' 2026-09-24T02:07:12,061 adding 'coralme/solver/debian/qmatrixA.cpython-310-x86_64-linux-gnu.so' 2026-09-24T02:07:12,068 adding 'coralme/solver/debian/qmatrixA.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:12,074 adding 'coralme/solver/debian/qmatrixA.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:12,081 adding 'coralme/solver/debian/qmatrixA.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:12,087 adding 'coralme/solver/debian/qmatrixA.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:12,109 adding 'coralme/solver/debian/qmatrixA.cpython-37m-x86_64-linux-gnu.so' 2026-09-24T02:07:12,132 adding 'coralme/solver/debian/qmatrixA.cpython-38-x86_64-linux-gnu.so' 2026-09-24T02:07:12,154 adding 'coralme/solver/debian/qmatrixA.cpython-39-x86_64-linux-gnu.so' 2026-09-24T02:07:12,176 adding 'coralme/solver/debian/qsolveME.cpython-310-x86_64-linux-gnu.so' 2026-09-24T02:07:12,183 adding 'coralme/solver/debian/qsolveME.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:12,189 adding 'coralme/solver/debian/qsolveME.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:12,196 adding 'coralme/solver/debian/qsolveME.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:12,202 adding 'coralme/solver/debian/qsolveME.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:12,224 adding 'coralme/solver/debian/qsolveME.cpython-37m-x86_64-linux-gnu.so' 2026-09-24T02:07:12,247 adding 'coralme/solver/debian/qsolveME.cpython-38-x86_64-linux-gnu.so' 2026-09-24T02:07:12,269 adding 'coralme/solver/debian/qsolveME.cpython-39-x86_64-linux-gnu.so' 2026-09-24T02:07:12,373 adding 'coralme/solver/debian/qvaryME.cpython-310-x86_64-linux-gnu.so' 2026-09-24T02:07:12,457 adding 'coralme/solver/debian/qvaryME.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:12,540 adding 'coralme/solver/debian/qvaryME.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:12,623 adding 'coralme/solver/debian/qvaryME.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:12,707 adding 'coralme/solver/debian/qvaryME.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:12,812 adding 'coralme/solver/debian/qvaryME.cpython-37m-x86_64-linux-gnu.so' 2026-09-24T02:07:12,920 adding 'coralme/solver/debian/qvaryME.cpython-38-x86_64-linux-gnu.so' 2026-09-24T02:07:13,028 adding 'coralme/solver/debian/qvaryME.cpython-39-x86_64-linux-gnu.so' 2026-09-24T02:07:13,134 adding 'coralme/solver/debian/qwarmLP.cpython-310-x86_64-linux-gnu.so' 2026-09-24T02:07:13,218 adding 'coralme/solver/debian/qwarmLP.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:13,301 adding 'coralme/solver/debian/qwarmLP.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:13,383 adding 'coralme/solver/debian/qwarmLP.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:13,466 adding 'coralme/solver/debian/qwarmLP.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:13,571 adding 'coralme/solver/debian/qwarmLP.cpython-37m-x86_64-linux-gnu.so' 2026-09-24T02:07:13,677 adding 'coralme/solver/debian/qwarmLP.cpython-38-x86_64-linux-gnu.so' 2026-09-24T02:07:13,784 adding 'coralme/solver/debian/qwarmLP.cpython-39-x86_64-linux-gnu.so' 2026-09-24T02:07:13,877 adding 'coralme/solver/debian/warmLP.cpython-310-x86_64-linux-gnu.so' 2026-09-24T02:07:13,946 adding 'coralme/solver/debian/warmLP.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:14,015 adding 'coralme/solver/debian/warmLP.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:14,083 adding 'coralme/solver/debian/warmLP.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:14,151 adding 'coralme/solver/debian/warmLP.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:14,244 adding 'coralme/solver/debian/warmLP.cpython-37m-x86_64-linux-gnu.so' 2026-09-24T02:07:14,337 adding 'coralme/solver/debian/warmLP.cpython-38-x86_64-linux-gnu.so' 2026-09-24T02:07:14,431 adding 'coralme/solver/debian/warmLP.cpython-39-x86_64-linux-gnu.so' 2026-09-24T02:07:14,440 adding 'coralme/solver/rhel/qmatrixA.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:14,446 adding 'coralme/solver/rhel/qmatrixA.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:14,452 adding 'coralme/solver/rhel/qmatrixA.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:14,458 adding 'coralme/solver/rhel/qmatrixA.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:14,464 adding 'coralme/solver/rhel/qsolveME.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:14,470 adding 'coralme/solver/rhel/qsolveME.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:14,477 adding 'coralme/solver/rhel/qsolveME.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:14,483 adding 'coralme/solver/rhel/qsolveME.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:14,563 adding 'coralme/solver/rhel/qvaryME.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:14,646 adding 'coralme/solver/rhel/qvaryME.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:14,729 adding 'coralme/solver/rhel/qwarmLP.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:14,812 adding 'coralme/solver/rhel/qwarmLP.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:14,895 adding 'coralme/solver/rhel/qwarmLP.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:14,978 adding 'coralme/solver/rhel/qwarmLP.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:15,046 adding 'coralme/solver/rhel/warmLP.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:15,114 adding 'coralme/solver/rhel/warmLP.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:15,182 adding 'coralme/solver/rhel/warmLP.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:15,250 adding 'coralme/solver/rhel/warmLP.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:15,259 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-310-x86_64-linux-gnu.so' 2026-09-24T02:07:15,265 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:15,272 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:15,278 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:15,284 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:15,300 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-38-x86_64-linux-gnu.so' 2026-09-24T02:07:15,306 adding 'coralme/solver/rhel-ubi9/qmatrixA.cpython-39-x86_64-linux-gnu.so' 2026-09-24T02:07:15,312 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-310-x86_64-linux-gnu.so' 2026-09-24T02:07:15,318 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:15,324 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:15,331 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:15,337 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:15,352 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-38-x86_64-linux-gnu.so' 2026-09-24T02:07:15,359 adding 'coralme/solver/rhel-ubi9/qsolveME.cpython-39-x86_64-linux-gnu.so' 2026-09-24T02:07:15,439 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-310-x86_64-linux-gnu.so' 2026-09-24T02:07:15,522 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:15,605 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:15,688 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:15,771 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:15,871 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-38-x86_64-linux-gnu.so' 2026-09-24T02:07:15,954 adding 'coralme/solver/rhel-ubi9/qvaryME.cpython-39-x86_64-linux-gnu.so' 2026-09-24T02:07:16,037 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-310-x86_64-linux-gnu.so' 2026-09-24T02:07:16,119 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:16,201 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:16,284 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:16,366 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:16,464 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-38-x86_64-linux-gnu.so' 2026-09-24T02:07:16,547 adding 'coralme/solver/rhel-ubi9/qwarmLP.cpython-39-x86_64-linux-gnu.so' 2026-09-24T02:07:16,615 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-310-x86_64-linux-gnu.so' 2026-09-24T02:07:16,683 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-311-x86_64-linux-gnu.so' 2026-09-24T02:07:16,751 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-312-x86_64-linux-gnu.so' 2026-09-24T02:07:16,818 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-313-x86_64-linux-gnu.so' 2026-09-24T02:07:16,886 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-314-x86_64-linux-gnu.so' 2026-09-24T02:07:16,972 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-38-x86_64-linux-gnu.so' 2026-09-24T02:07:17,040 adding 'coralme/solver/rhel-ubi9/warmLP.cpython-39-x86_64-linux-gnu.so' 2026-09-24T02:07:17,044 adding 'coralme/util/__init__.py' 2026-09-24T02:07:17,046 adding 'coralme/util/agora.py' 2026-09-24T02:07:17,053 adding 'coralme/util/building.py' 2026-09-24T02:07:17,054 adding 'coralme/util/change_model_genes.py' 2026-09-24T02:07:17,056 adding 'coralme/util/cli.py' 2026-09-24T02:07:17,058 adding 'coralme/util/compare.py' 2026-09-24T02:07:17,059 adding 'coralme/util/dogma.py' 2026-09-24T02:07:17,062 adding 'coralme/util/essentiality.py' 2026-09-24T02:07:17,064 adding 'coralme/util/excel2model.py' 2026-09-24T02:07:17,066 adding 'coralme/util/flux_analysis.py' 2026-09-24T02:07:17,120 adding 'coralme/util/manifest.json' 2026-09-24T02:07:17,128 adding 'coralme/util/massbalance.py' 2026-09-24T02:07:17,130 adding 'coralme/util/model2excel.py' 2026-09-24T02:07:17,133 adding 'coralme-1.2.4.dist-info/licenses/LICENSE' 2026-09-24T02:07:17,134 adding 'coralme-1.2.4.dist-info/METADATA' 2026-09-24T02:07:17,135 adding 'coralme-1.2.4.dist-info/WHEEL' 2026-09-24T02:07:17,136 adding 'coralme-1.2.4.dist-info/entry_points.txt' 2026-09-24T02:07:17,137 adding 'coralme-1.2.4.dist-info/top_level.txt' 2026-09-24T02:07:17,141 adding 'coralme-1.2.4.dist-info/RECORD' 2026-09-24T02:07:17,377 removing build/bdist.linux-armv7l/wheel 2026-09-24T02:07:17,549 Building wheel for coralme (pyproject.toml): finished with status 'done' 2026-09-24T02:07:18,008 Created wheel for coralme: filename=coralme-1.2.4-py3-none-any.whl size=21425134 sha256=aa4ea71f5e96f655acfde3a56895dab3ed725b01a9a5073d214837ee391bb3b2 2026-09-24T02:07:18,009 Stored in directory: /tmp/pip-ephem-wheel-cache-7duekl2w/wheels/51/d4/b0/01c29bfba1c83d901cd56fa86a2d7e7dc90ee8e60987560621 2026-09-24T02:07:18,035 Successfully built coralme 2026-09-24T02:07:18,556 Removed build tracker: '/tmp/pip-build-tracker-0tn8c185'