2026-09-25T22:23:46,070 Created temporary directory: /tmp/pip-ephem-wheel-cache-7dxi0lil 2026-09-25T22:23:46,072 Created temporary directory: /tmp/pip-build-tracker-t_fe0i4t 2026-09-25T22:23:46,073 Initialized build tracking at /tmp/pip-build-tracker-t_fe0i4t 2026-09-25T22:23:46,073 Created build tracker: /tmp/pip-build-tracker-t_fe0i4t 2026-09-25T22:23:46,074 Entered build tracker: /tmp/pip-build-tracker-t_fe0i4t 2026-09-25T22:23:46,075 Created temporary directory: /tmp/pip-wheel-wy6ph54h 2026-09-25T22:23:46,078 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-25T22:23:46,080 Created temporary directory: /tmp/pip-ephem-wheel-cache-9q9jwvxo 2026-09-25T22:23:46,102 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-25T22:23:46,105 2 location(s) to search for versions of varcode: 2026-09-25T22:23:46,105 * https://pypi.org/simple/varcode/ 2026-09-25T22:23:46,105 * https://www.piwheels.org/simple/varcode/ 2026-09-25T22:23:46,106 Fetching project page and analyzing links: https://pypi.org/simple/varcode/ 2026-09-25T22:23:46,107 Getting page https://pypi.org/simple/varcode/ 2026-09-25T22:23:46,108 Found index url https://pypi.org/simple 2026-09-25T22:23:46,311 Fetched page https://pypi.org/simple/varcode/ as application/vnd.pypi.simple.v1+json 2026-09-25T22:23:46,362 Found link https://files.pythonhosted.org/packages/77/c8/f88b644d2ebbc1bf72dd5d1609c2e399e14e41c90b4b364ef3968e304b68/varcode-0.0.0.tar.gz (from 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https://www.piwheels.org/simple/varcode/) 2026-09-25T22:23:47,170 Skipping link: not a file: https://www.piwheels.org/simple/varcode/ 2026-09-25T22:23:47,170 Skipping link: not a file: https://pypi.org/simple/varcode/ 2026-09-25T22:23:47,234 Given no hashes to check 1 links for project 'varcode': discarding no candidates 2026-09-25T22:23:47,261 Collecting varcode==10.5.1 2026-09-25T22:23:47,264 Created temporary directory: /tmp/pip-unpack-sinbt_2i 2026-09-25T22:23:47,420 Downloading varcode-10.5.1.tar.gz (499 kB) 2026-09-25T22:23:47,968 Added varcode==10.5.1 from https://files.pythonhosted.org/packages/e9/78/df933145e077645ae16b751d8d35c79d4678b8d57ac2b2533f2417f112c6/varcode-10.5.1.tar.gz to build tracker '/tmp/pip-build-tracker-t_fe0i4t' 2026-09-25T22:23:47,973 Created temporary directory: /tmp/pip-build-env-z1zk77fu 2026-09-25T22:23:47,977 Installing build dependencies: started 2026-09-25T22:23:47,979 Running command pip subprocess to install build dependencies 2026-09-25T22:23:49,109 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-09-25T22:23:49,589 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-09-25T22:23:49,611 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-09-25T22:23:51,448 Collecting setuptools>=64 2026-09-25T22:23:51,449 Obtaining dependency information for setuptools>=64 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-09-25T22:23:51,465 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-09-25T22:23:51,715 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-25T22:23:51,799 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-09-25T22:23:54,567 Installing collected packages: setuptools 2026-09-25T22:23:56,847 Successfully installed setuptools-84.0.0 2026-09-25T22:23:57,118 Installing build dependencies: finished with status 'done' 2026-09-25T22:23:57,125 Getting requirements to build wheel: started 2026-09-25T22:23:57,126 Running command Getting requirements to build wheel 2026-09-25T22:23:57,825 /tmp/pip-build-env-z1zk77fu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-25T22:23:57,826 !! 2026-09-25T22:23:57,827 ******************************************************************************** 2026-09-25T22:23:57,827 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-25T22:23:57,829 License :: OSI Approved :: Apache Software License 2026-09-25T22:23:57,830 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-25T22:23:57,831 ******************************************************************************** 2026-09-25T22:23:57,832 !! 2026-09-25T22:23:57,833 dist._finalize_license_expression() 2026-09-25T22:23:57,833 /tmp/pip-build-env-z1zk77fu/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-25T22:23:57,833 !! 2026-09-25T22:23:57,834 ******************************************************************************** 2026-09-25T22:23:57,835 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-25T22:23:57,836 License :: OSI Approved :: Apache Software License 2026-09-25T22:23:57,837 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-25T22:23:57,837 ******************************************************************************** 2026-09-25T22:23:57,838 !! 2026-09-25T22:23:57,838 self._finalize_license_expression() 2026-09-25T22:23:57,839 running egg_info 2026-09-25T22:23:57,845 writing varcode.egg-info/PKG-INFO 2026-09-25T22:23:57,849 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-09-25T22:23:57,851 writing entry points to varcode.egg-info/entry_points.txt 2026-09-25T22:23:57,854 writing requirements to varcode.egg-info/requires.txt 2026-09-25T22:23:57,855 writing top-level names to varcode.egg-info/top_level.txt 2026-09-25T22:23:57,885 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-09-25T22:23:57,895 reading manifest template 'MANIFEST.in' 2026-09-25T22:23:57,897 adding license file 'LICENSE' 2026-09-25T22:23:57,906 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-09-25T22:23:58,005 Getting requirements to build wheel: finished with status 'done' 2026-09-25T22:23:58,008 Created temporary directory: /tmp/pip-modern-metadata-r_x70ddr 2026-09-25T22:23:58,011 Preparing metadata (pyproject.toml): started 2026-09-25T22:23:58,012 Running command Preparing metadata (pyproject.toml) 2026-09-25T22:23:58,676 /tmp/pip-build-env-z1zk77fu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-25T22:23:58,676 !! 2026-09-25T22:23:58,677 ******************************************************************************** 2026-09-25T22:23:58,678 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-25T22:23:58,679 License :: OSI Approved :: Apache Software License 2026-09-25T22:23:58,680 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-25T22:23:58,681 ******************************************************************************** 2026-09-25T22:23:58,682 !! 2026-09-25T22:23:58,683 dist._finalize_license_expression() 2026-09-25T22:23:58,683 /tmp/pip-build-env-z1zk77fu/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-25T22:23:58,684 !! 2026-09-25T22:23:58,685 ******************************************************************************** 2026-09-25T22:23:58,685 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-25T22:23:58,687 License :: OSI Approved :: Apache Software License 2026-09-25T22:23:58,688 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-25T22:23:58,688 ******************************************************************************** 2026-09-25T22:23:58,690 !! 2026-09-25T22:23:58,690 self._finalize_license_expression() 2026-09-25T22:23:58,691 running dist_info 2026-09-25T22:23:58,700 creating /tmp/pip-modern-metadata-r_x70ddr/varcode.egg-info 2026-09-25T22:23:58,701 writing /tmp/pip-modern-metadata-r_x70ddr/varcode.egg-info/PKG-INFO 2026-09-25T22:23:58,706 writing dependency_links to /tmp/pip-modern-metadata-r_x70ddr/varcode.egg-info/dependency_links.txt 2026-09-25T22:23:58,708 writing entry points to /tmp/pip-modern-metadata-r_x70ddr/varcode.egg-info/entry_points.txt 2026-09-25T22:23:58,710 writing requirements to /tmp/pip-modern-metadata-r_x70ddr/varcode.egg-info/requires.txt 2026-09-25T22:23:58,711 writing top-level names to /tmp/pip-modern-metadata-r_x70ddr/varcode.egg-info/top_level.txt 2026-09-25T22:23:58,713 writing manifest file '/tmp/pip-modern-metadata-r_x70ddr/varcode.egg-info/SOURCES.txt' 2026-09-25T22:23:58,740 reading manifest file '/tmp/pip-modern-metadata-r_x70ddr/varcode.egg-info/SOURCES.txt' 2026-09-25T22:23:58,742 reading manifest template 'MANIFEST.in' 2026-09-25T22:23:58,743 adding license file 'LICENSE' 2026-09-25T22:23:58,751 writing manifest file '/tmp/pip-modern-metadata-r_x70ddr/varcode.egg-info/SOURCES.txt' 2026-09-25T22:23:58,752 creating '/tmp/pip-modern-metadata-r_x70ddr/varcode-10.5.1.dist-info' 2026-09-25T22:23:58,880 Preparing metadata (pyproject.toml): finished with status 'done' 2026-09-25T22:23:58,884 Source in /tmp/pip-wheel-wy6ph54h/varcode_68e87e4069234482a18e67047d17dbfd has version 10.5.1, which satisfies requirement varcode==10.5.1 from https://files.pythonhosted.org/packages/e9/78/df933145e077645ae16b751d8d35c79d4678b8d57ac2b2533f2417f112c6/varcode-10.5.1.tar.gz 2026-09-25T22:23:58,885 Removed varcode==10.5.1 from https://files.pythonhosted.org/packages/e9/78/df933145e077645ae16b751d8d35c79d4678b8d57ac2b2533f2417f112c6/varcode-10.5.1.tar.gz from build tracker '/tmp/pip-build-tracker-t_fe0i4t' 2026-09-25T22:23:58,891 Created temporary directory: /tmp/pip-unpack-jwa2_f7a 2026-09-25T22:23:58,891 Building wheels for collected packages: varcode 2026-09-25T22:23:58,896 Created temporary directory: /tmp/pip-wheel-idydpfh8 2026-09-25T22:23:58,896 Destination directory: /tmp/pip-wheel-idydpfh8 2026-09-25T22:23:58,898 Building wheel for varcode (pyproject.toml): started 2026-09-25T22:23:58,899 Running command Building wheel for varcode (pyproject.toml) 2026-09-25T22:23:59,567 /tmp/pip-build-env-z1zk77fu/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-25T22:23:59,567 !! 2026-09-25T22:23:59,569 ******************************************************************************** 2026-09-25T22:23:59,569 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-25T22:23:59,570 License :: OSI Approved :: Apache Software License 2026-09-25T22:23:59,572 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-25T22:23:59,572 ******************************************************************************** 2026-09-25T22:23:59,573 !! 2026-09-25T22:23:59,574 dist._finalize_license_expression() 2026-09-25T22:23:59,575 /tmp/pip-build-env-z1zk77fu/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-09-25T22:23:59,575 !! 2026-09-25T22:23:59,576 ******************************************************************************** 2026-09-25T22:23:59,577 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-09-25T22:23:59,578 License :: OSI Approved :: Apache Software License 2026-09-25T22:23:59,579 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-09-25T22:23:59,580 ******************************************************************************** 2026-09-25T22:23:59,581 !! 2026-09-25T22:23:59,582 self._finalize_license_expression() 2026-09-25T22:23:59,582 running bdist_wheel 2026-09-25T22:23:59,594 running build 2026-09-25T22:23:59,594 running build_py 2026-09-25T22:23:59,601 creating build/lib/varcode 2026-09-25T22:23:59,604 copying varcode/variant_collection.py -> build/lib/varcode 2026-09-25T22:23:59,607 copying varcode/util.py -> build/lib/varcode 2026-09-25T22:23:59,609 copying varcode/maf.py -> build/lib/varcode 2026-09-25T22:23:59,611 copying varcode/transcript_layout.py -> build/lib/varcode 2026-09-25T22:23:59,614 copying varcode/genome.py -> build/lib/varcode 2026-09-25T22:23:59,616 copying varcode/realized_effects.py -> build/lib/varcode 2026-09-25T22:23:59,618 copying varcode/germline.py -> build/lib/varcode 2026-09-25T22:23:59,621 copying varcode/sv_allele_parser.py -> build/lib/varcode 2026-09-25T22:23:59,624 copying varcode/nucleotides.py -> build/lib/varcode 2026-09-25T22:23:59,626 copying varcode/splice_outcomes.py -> build/lib/varcode 2026-09-25T22:23:59,629 copying varcode/rna_evidence.py -> build/lib/varcode 2026-09-25T22:23:59,632 copying varcode/exacto.py -> build/lib/varcode 2026-09-25T22:23:59,634 copying varcode/vcf_output.py -> build/lib/varcode 2026-09-25T22:23:59,637 copying varcode/structural_variant.py -> build/lib/varcode 2026-09-25T22:23:59,640 copying varcode/__init__.py -> build/lib/varcode 2026-09-25T22:23:59,642 copying varcode/rna_read_phasing.py -> build/lib/varcode 2026-09-25T22:23:59,645 copying varcode/transcript_model.py -> build/lib/varcode 2026-09-25T22:23:59,647 copying varcode/genotype.py -> build/lib/varcode 2026-09-25T22:23:59,649 copying varcode/errors.py -> build/lib/varcode 2026-09-25T22:23:59,652 copying varcode/effect_hypotheses.py -> build/lib/varcode 2026-09-25T22:23:59,655 copying varcode/sv_comparison.py -> build/lib/varcode 2026-09-25T22:23:59,658 copying varcode/vcf_parsing.py -> build/lib/varcode 2026-09-25T22:23:59,661 copying varcode/mutant_transcript.py -> build/lib/varcode 2026-09-25T22:23:59,664 copying varcode/effect_candidates.py -> build/lib/varcode 2026-09-25T22:23:59,667 copying varcode/_sample_vcf.py -> build/lib/varcode 2026-09-25T22:23:59,671 copying varcode/cryptic_exons.py -> build/lib/varcode 2026-09-25T22:23:59,676 copying varcode/genomic_layout.py -> build/lib/varcode 2026-09-25T22:23:59,680 copying varcode/reference.py -> build/lib/varcode 2026-09-25T22:23:59,686 copying varcode/string_helpers.py -> build/lib/varcode 2026-09-25T22:23:59,689 copying varcode/common.py -> build/lib/varcode 2026-09-25T22:23:59,692 copying varcode/ucsc_reference_names.py -> build/lib/varcode 2026-09-25T22:23:59,696 copying varcode/vcf.py -> build/lib/varcode 2026-09-25T22:23:59,700 copying varcode/sample_identity.py -> build/lib/varcode 2026-09-25T22:23:59,704 copying varcode/csv_helpers.py -> build/lib/varcode 2026-09-25T22:23:59,707 copying varcode/variant.py -> build/lib/varcode 2026-09-25T22:23:59,710 copying varcode/phasing.py -> build/lib/varcode 2026-09-25T22:23:59,715 copying varcode/splice_graph.py -> build/lib/varcode 2026-09-25T22:23:59,721 copying varcode/genome_sequence.py -> build/lib/varcode 2026-09-25T22:23:59,726 copying varcode/version.py -> build/lib/varcode 2026-09-25T22:23:59,732 creating build/lib/varcode/effects 2026-09-25T22:23:59,734 copying varcode/effects/classify.py -> build/lib/varcode/effects 2026-09-25T22:23:59,739 copying varcode/effects/effect_helpers.py -> build/lib/varcode/effects 2026-09-25T22:23:59,745 copying varcode/effects/effect_prediction.py -> build/lib/varcode/effects 2026-09-25T22:23:59,747 copying varcode/effects/effect_ordering.py -> build/lib/varcode/effects 2026-09-25T22:23:59,750 copying varcode/effects/effect_prediction_coding_in_frame.py -> build/lib/varcode/effects 2026-09-25T22:23:59,753 copying varcode/effects/codon_tables.py -> build/lib/varcode/effects 2026-09-25T22:23:59,755 copying varcode/effects/fast_path.py -> build/lib/varcode/effects 2026-09-25T22:23:59,759 copying varcode/effects/effect_prediction_coding_frameshift.py -> build/lib/varcode/effects 2026-09-25T22:23:59,761 copying varcode/effects/transcript_helpers.py -> build/lib/varcode/effects 2026-09-25T22:23:59,763 copying varcode/effects/__init__.py -> build/lib/varcode/effects 2026-09-25T22:23:59,766 copying varcode/effects/selenocysteine.py -> build/lib/varcode/effects 2026-09-25T22:23:59,768 copying varcode/effects/effect_prediction_coding.py -> build/lib/varcode/effects 2026-09-25T22:23:59,771 copying varcode/effects/structural.py -> build/lib/varcode/effects 2026-09-25T22:23:59,775 copying varcode/effects/effect_classes.py -> build/lib/varcode/effects 2026-09-25T22:23:59,780 copying varcode/effects/common.py -> build/lib/varcode/effects 2026-09-25T22:23:59,782 copying varcode/effects/effect_collection.py -> build/lib/varcode/effects 2026-09-25T22:23:59,786 copying varcode/effects/structural_serialization.py -> build/lib/varcode/effects 2026-09-25T22:23:59,788 copying varcode/effects/sequence_change.py -> build/lib/varcode/effects 2026-09-25T22:23:59,791 copying varcode/effects/mutate.py -> build/lib/varcode/effects 2026-09-25T22:23:59,793 copying varcode/effects/translate.py -> build/lib/varcode/effects 2026-09-25T22:23:59,796 creating build/lib/varcode/transforms 2026-09-25T22:23:59,798 copying varcode/transforms/__init__.py -> build/lib/varcode/transforms 2026-09-25T22:23:59,801 creating build/lib/varcode/annotators 2026-09-25T22:23:59,803 copying varcode/annotators/registry.py -> build/lib/varcode/annotators 2026-09-25T22:23:59,805 copying varcode/annotators/__init__.py -> build/lib/varcode/annotators 2026-09-25T22:23:59,808 copying varcode/annotators/fast.py -> build/lib/varcode/annotators 2026-09-25T22:23:59,810 copying varcode/annotators/protein_diff.py -> build/lib/varcode/annotators 2026-09-25T22:23:59,814 creating build/lib/varcode/cli 2026-09-25T22:23:59,815 copying varcode/cli/sample_checks.py -> build/lib/varcode/cli 2026-09-25T22:23:59,818 copying varcode/cli/version_info.py -> build/lib/varcode/cli 2026-09-25T22:23:59,822 copying varcode/cli/genes_script.py -> build/lib/varcode/cli 2026-09-25T22:23:59,826 copying varcode/cli/main.py -> build/lib/varcode/cli 2026-09-25T22:23:59,829 copying varcode/cli/__init__.py -> build/lib/varcode/cli 2026-09-25T22:24:00,041 copying varcode/cli/effects_script.py -> build/lib/varcode/cli 2026-09-25T22:24:00,043 copying varcode/cli/variant_args.py -> build/lib/varcode/cli 2026-09-25T22:24:00,046 running egg_info 2026-09-25T22:24:00,056 writing varcode.egg-info/PKG-INFO 2026-09-25T22:24:00,060 writing dependency_links to varcode.egg-info/dependency_links.txt 2026-09-25T22:24:00,062 writing entry points to varcode.egg-info/entry_points.txt 2026-09-25T22:24:00,065 writing requirements to varcode.egg-info/requires.txt 2026-09-25T22:24:00,066 writing top-level names to varcode.egg-info/top_level.txt 2026-09-25T22:24:00,085 reading manifest file 'varcode.egg-info/SOURCES.txt' 2026-09-25T22:24:00,097 reading manifest template 'MANIFEST.in' 2026-09-25T22:24:00,099 adding license file 'LICENSE' 2026-09-25T22:24:00,116 writing manifest file 'varcode.egg-info/SOURCES.txt' 2026-09-25T22:24:00,126 copying varcode/cli/logging.conf -> build/lib/varcode/cli 2026-09-25T22:24:00,149 installing to build/bdist.linux-armv7l/wheel 2026-09-25T22:24:00,150 running install 2026-09-25T22:24:00,187 running install_lib 2026-09-25T22:24:00,195 creating build/bdist.linux-armv7l/wheel 2026-09-25T22:24:00,198 creating build/bdist.linux-armv7l/wheel/varcode 2026-09-25T22:24:00,200 copying build/lib/varcode/variant_collection.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,203 copying build/lib/varcode/util.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,206 copying build/lib/varcode/maf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,208 copying build/lib/varcode/transcript_layout.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,211 copying build/lib/varcode/genome.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,214 copying build/lib/varcode/realized_effects.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,217 copying build/lib/varcode/germline.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,221 creating build/bdist.linux-armv7l/wheel/varcode/effects 2026-09-25T22:24:00,222 copying build/lib/varcode/effects/classify.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,225 copying build/lib/varcode/effects/effect_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,228 copying build/lib/varcode/effects/effect_prediction.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,231 copying build/lib/varcode/effects/effect_ordering.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,234 copying build/lib/varcode/effects/effect_prediction_coding_in_frame.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,237 copying build/lib/varcode/effects/codon_tables.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,239 copying build/lib/varcode/effects/fast_path.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,242 copying build/lib/varcode/effects/effect_prediction_coding_frameshift.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,244 copying build/lib/varcode/effects/transcript_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,247 copying build/lib/varcode/effects/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,249 copying build/lib/varcode/effects/selenocysteine.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,251 copying build/lib/varcode/effects/effect_prediction_coding.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,255 copying build/lib/varcode/effects/structural.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,262 copying build/lib/varcode/effects/effect_classes.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,307 copying build/lib/varcode/effects/common.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,309 copying build/lib/varcode/effects/effect_collection.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,312 copying build/lib/varcode/effects/structural_serialization.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,315 copying build/lib/varcode/effects/sequence_change.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,318 copying build/lib/varcode/effects/mutate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,320 copying build/lib/varcode/effects/translate.py -> build/bdist.linux-armv7l/wheel/./varcode/effects 2026-09-25T22:24:00,323 copying build/lib/varcode/sv_allele_parser.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,326 copying build/lib/varcode/nucleotides.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,328 copying build/lib/varcode/splice_outcomes.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,333 copying build/lib/varcode/rna_evidence.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,336 creating build/bdist.linux-armv7l/wheel/varcode/transforms 2026-09-25T22:24:00,337 copying build/lib/varcode/transforms/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/transforms 2026-09-25T22:24:00,341 copying build/lib/varcode/exacto.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,345 copying build/lib/varcode/vcf_output.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,349 copying build/lib/varcode/structural_variant.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,353 copying build/lib/varcode/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,355 copying build/lib/varcode/rna_read_phasing.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,359 copying build/lib/varcode/transcript_model.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,362 copying build/lib/varcode/genotype.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,364 copying build/lib/varcode/errors.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,366 copying build/lib/varcode/effect_hypotheses.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,369 copying build/lib/varcode/sv_comparison.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,372 copying build/lib/varcode/vcf_parsing.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,375 copying build/lib/varcode/mutant_transcript.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,379 creating build/bdist.linux-armv7l/wheel/varcode/annotators 2026-09-25T22:24:00,380 copying build/lib/varcode/annotators/registry.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-09-25T22:24:00,382 copying build/lib/varcode/annotators/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-09-25T22:24:00,385 copying build/lib/varcode/annotators/fast.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-09-25T22:24:00,387 copying build/lib/varcode/annotators/protein_diff.py -> build/bdist.linux-armv7l/wheel/./varcode/annotators 2026-09-25T22:24:00,390 copying build/lib/varcode/effect_candidates.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,392 copying build/lib/varcode/_sample_vcf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,395 copying build/lib/varcode/cryptic_exons.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,398 copying build/lib/varcode/genomic_layout.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,402 copying build/lib/varcode/reference.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,404 copying build/lib/varcode/string_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,407 copying build/lib/varcode/common.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,409 copying build/lib/varcode/ucsc_reference_names.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,411 copying build/lib/varcode/vcf.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,414 copying build/lib/varcode/sample_identity.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,417 copying build/lib/varcode/csv_helpers.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,420 copying build/lib/varcode/variant.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,423 copying build/lib/varcode/phasing.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,427 copying build/lib/varcode/splice_graph.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,430 copying build/lib/varcode/genome_sequence.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,434 creating build/bdist.linux-armv7l/wheel/varcode/cli 2026-09-25T22:24:00,435 copying build/lib/varcode/cli/logging.conf -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-09-25T22:24:00,438 copying build/lib/varcode/cli/sample_checks.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-09-25T22:24:00,440 copying build/lib/varcode/cli/version_info.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-09-25T22:24:00,442 copying build/lib/varcode/cli/genes_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-09-25T22:24:00,445 copying build/lib/varcode/cli/main.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-09-25T22:24:00,447 copying build/lib/varcode/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-09-25T22:24:00,449 copying build/lib/varcode/cli/effects_script.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-09-25T22:24:00,451 copying build/lib/varcode/cli/variant_args.py -> build/bdist.linux-armv7l/wheel/./varcode/cli 2026-09-25T22:24:00,454 copying build/lib/varcode/version.py -> build/bdist.linux-armv7l/wheel/./varcode 2026-09-25T22:24:00,456 running install_egg_info 2026-09-25T22:24:00,461 Copying varcode.egg-info to build/bdist.linux-armv7l/wheel/./varcode-10.5.1-py3.11.egg-info 2026-09-25T22:24:00,474 running install_scripts 2026-09-25T22:24:00,487 creating build/bdist.linux-armv7l/wheel/varcode-10.5.1.dist-info/WHEEL 2026-09-25T22:24:00,490 creating '/tmp/pip-wheel-idydpfh8/.tmp-6yhkdvzo/varcode-10.5.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-09-25T22:24:00,494 adding 'varcode/__init__.py' 2026-09-25T22:24:00,497 adding 'varcode/_sample_vcf.py' 2026-09-25T22:24:00,499 adding 'varcode/common.py' 2026-09-25T22:24:00,502 adding 'varcode/cryptic_exons.py' 2026-09-25T22:24:00,504 adding 'varcode/csv_helpers.py' 2026-09-25T22:24:00,506 adding 'varcode/effect_candidates.py' 2026-09-25T22:24:00,509 adding 'varcode/effect_hypotheses.py' 2026-09-25T22:24:00,511 adding 'varcode/errors.py' 2026-09-25T22:24:00,514 adding 'varcode/exacto.py' 2026-09-25T22:24:00,517 adding 'varcode/genome.py' 2026-09-25T22:24:00,519 adding 'varcode/genome_sequence.py' 2026-09-25T22:24:00,523 adding 'varcode/genomic_layout.py' 2026-09-25T22:24:00,525 adding 'varcode/genotype.py' 2026-09-25T22:24:00,533 adding 'varcode/germline.py' 2026-09-25T22:24:00,535 adding 'varcode/maf.py' 2026-09-25T22:24:00,539 adding 'varcode/mutant_transcript.py' 2026-09-25T22:24:00,541 adding 'varcode/nucleotides.py' 2026-09-25T22:24:00,545 adding 'varcode/phasing.py' 2026-09-25T22:24:00,546 adding 'varcode/realized_effects.py' 2026-09-25T22:24:00,549 adding 'varcode/reference.py' 2026-09-25T22:24:00,552 adding 'varcode/rna_evidence.py' 2026-09-25T22:24:00,555 adding 'varcode/rna_read_phasing.py' 2026-09-25T22:24:00,558 adding 'varcode/sample_identity.py' 2026-09-25T22:24:00,560 adding 'varcode/splice_graph.py' 2026-09-25T22:24:00,569 adding 'varcode/splice_outcomes.py' 2026-09-25T22:24:00,571 adding 'varcode/string_helpers.py' 2026-09-25T22:24:00,575 adding 'varcode/structural_variant.py' 2026-09-25T22:24:00,578 adding 'varcode/sv_allele_parser.py' 2026-09-25T22:24:00,580 adding 'varcode/sv_comparison.py' 2026-09-25T22:24:00,583 adding 'varcode/transcript_layout.py' 2026-09-25T22:24:00,587 adding 'varcode/transcript_model.py' 2026-09-25T22:24:00,588 adding 'varcode/ucsc_reference_names.py' 2026-09-25T22:24:00,589 adding 'varcode/util.py' 2026-09-25T22:24:00,592 adding 'varcode/variant.py' 2026-09-25T22:24:00,596 adding 'varcode/variant_collection.py' 2026-09-25T22:24:00,599 adding 'varcode/vcf.py' 2026-09-25T22:24:00,601 adding 'varcode/vcf_output.py' 2026-09-25T22:24:00,604 adding 'varcode/vcf_parsing.py' 2026-09-25T22:24:00,605 adding 'varcode/version.py' 2026-09-25T22:24:00,607 adding 'varcode/annotators/__init__.py' 2026-09-25T22:24:00,609 adding 'varcode/annotators/fast.py' 2026-09-25T22:24:00,611 adding 'varcode/annotators/protein_diff.py' 2026-09-25T22:24:00,612 adding 'varcode/annotators/registry.py' 2026-09-25T22:24:00,614 adding 'varcode/cli/__init__.py' 2026-09-25T22:24:00,615 adding 'varcode/cli/effects_script.py' 2026-09-25T22:24:00,617 adding 'varcode/cli/genes_script.py' 2026-09-25T22:24:00,618 adding 'varcode/cli/logging.conf' 2026-09-25T22:24:00,619 adding 'varcode/cli/main.py' 2026-09-25T22:24:00,621 adding 'varcode/cli/sample_checks.py' 2026-09-25T22:24:00,623 adding 'varcode/cli/variant_args.py' 2026-09-25T22:24:00,624 adding 'varcode/cli/version_info.py' 2026-09-25T22:24:00,626 adding 'varcode/effects/__init__.py' 2026-09-25T22:24:00,628 adding 'varcode/effects/classify.py' 2026-09-25T22:24:00,630 adding 'varcode/effects/codon_tables.py' 2026-09-25T22:24:00,631 adding 'varcode/effects/common.py' 2026-09-25T22:24:00,641 adding 'varcode/effects/effect_classes.py' 2026-09-25T22:24:00,644 adding 'varcode/effects/effect_collection.py' 2026-09-25T22:24:00,646 adding 'varcode/effects/effect_helpers.py' 2026-09-25T22:24:00,649 adding 'varcode/effects/effect_ordering.py' 2026-09-25T22:24:00,652 adding 'varcode/effects/effect_prediction.py' 2026-09-25T22:24:00,654 adding 'varcode/effects/effect_prediction_coding.py' 2026-09-25T22:24:00,656 adding 'varcode/effects/effect_prediction_coding_frameshift.py' 2026-09-25T22:24:00,658 adding 'varcode/effects/effect_prediction_coding_in_frame.py' 2026-09-25T22:24:00,659 adding 'varcode/effects/fast_path.py' 2026-09-25T22:24:00,661 adding 'varcode/effects/mutate.py' 2026-09-25T22:24:00,662 adding 'varcode/effects/selenocysteine.py' 2026-09-25T22:24:00,665 adding 'varcode/effects/sequence_change.py' 2026-09-25T22:24:00,670 adding 'varcode/effects/structural.py' 2026-09-25T22:24:00,672 adding 'varcode/effects/structural_serialization.py' 2026-09-25T22:24:00,674 adding 'varcode/effects/transcript_helpers.py' 2026-09-25T22:24:00,675 adding 'varcode/effects/translate.py' 2026-09-25T22:24:00,680 adding 'varcode/transforms/__init__.py' 2026-09-25T22:24:00,684 adding 'varcode-10.5.1.dist-info/licenses/LICENSE' 2026-09-25T22:24:00,685 adding 'varcode-10.5.1.dist-info/METADATA' 2026-09-25T22:24:00,686 adding 'varcode-10.5.1.dist-info/WHEEL' 2026-09-25T22:24:00,687 adding 'varcode-10.5.1.dist-info/entry_points.txt' 2026-09-25T22:24:00,688 adding 'varcode-10.5.1.dist-info/top_level.txt' 2026-09-25T22:24:00,690 adding 'varcode-10.5.1.dist-info/RECORD' 2026-09-25T22:24:00,695 removing build/bdist.linux-armv7l/wheel 2026-09-25T22:24:00,814 Building wheel for varcode (pyproject.toml): finished with status 'done' 2026-09-25T22:24:00,825 Created wheel for varcode: filename=varcode-10.5.1-py3-none-any.whl size=305894 sha256=3e6098c2f65eb9e32d4c60092101140f6b2709c6f71886a9507826d48dcd3fb7 2026-09-25T22:24:00,826 Stored in directory: /tmp/pip-ephem-wheel-cache-9q9jwvxo/wheels/02/a4/ad/3a2b35b15f092cde5738f2a4c4e428c427a622eae24e30b39c 2026-09-25T22:24:00,839 Successfully built varcode 2026-09-25T22:24:00,854 Removed build tracker: '/tmp/pip-build-tracker-t_fe0i4t'