2026-10-05T21:07:42,580 Created temporary directory: /tmp/pip-ephem-wheel-cache-jb5oz1ey 2026-10-05T21:07:42,582 Created temporary directory: /tmp/pip-build-tracker-0_fv22gs 2026-10-05T21:07:42,583 Initialized build tracking at /tmp/pip-build-tracker-0_fv22gs 2026-10-05T21:07:42,583 Created build tracker: /tmp/pip-build-tracker-0_fv22gs 2026-10-05T21:07:42,584 Entered build tracker: /tmp/pip-build-tracker-0_fv22gs 2026-10-05T21:07:42,585 Created temporary directory: /tmp/pip-wheel-h3xd0fuz 2026-10-05T21:07:42,588 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-05T21:07:42,590 Created temporary directory: /tmp/pip-ephem-wheel-cache-h3li9vqo 2026-10-05T21:07:42,612 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-05T21:07:42,616 2 location(s) to search for versions of biom-format: 2026-10-05T21:07:42,616 * https://pypi.org/simple/biom-format/ 2026-10-05T21:07:42,616 * https://www.piwheels.org/simple/biom-format/ 2026-10-05T21:07:42,616 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2026-10-05T21:07:42,617 Getting page https://pypi.org/simple/biom-format/ 2026-10-05T21:07:42,619 Found index url https://pypi.org/simple 2026-10-05T21:07:42,780 Fetched page https://pypi.org/simple/biom-format/ as application/vnd.pypi.simple.v1+json 2026-10-05T21:07:42,799 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2026-10-05T21:07:42,800 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.0 2026-10-05T21:07:42,800 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.1 2026-10-05T21:07:42,801 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.0 2026-10-05T21:07:42,802 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.1 2026-10-05T21:07:42,803 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1 2026-10-05T21:07:42,804 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.1 2026-10-05T21:07:42,804 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.2 2026-10-05T21:07:42,805 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.3 2026-10-05T21:07:42,806 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.4 2026-10-05T21:07:42,807 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.5 2026-10-05T21:07:42,807 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.6 2026-10-05T21:07:42,808 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2026-10-05T21:07:42,809 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.7 2026-10-05T21:07:42,810 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2026-10-05T21:07:42,810 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2026-10-05T21:07:42,811 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.9 2026-10-05T21:07:42,811 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.10 2026-10-05T21:07:42,812 Found link https://files.pythonhosted.org/packages/fc/3f/7eb762b52f490b810b1686fd41cd6f3f7f33c0dab29c4273c96e9a1641a2/biom-format-2.1.12.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.12 2026-10-05T21:07:42,813 Found link https://files.pythonhosted.org/packages/90/57/0a326e17005b25e56f6e25b8b1e3eae299b7f6d53af06b11c4830d631612/biom-format-2.1.13.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.13 2026-10-05T21:07:42,814 Found link https://files.pythonhosted.org/packages/8e/2c/132267e58172821fc15fa3856f53ed09b607837fe06e2bb60b230005951d/biom-format-2.1.14.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.14 2026-10-05T21:07:42,815 Found link https://files.pythonhosted.org/packages/fc/db/daf7c3872dd49acf6233873fb6f1ab7b6ca324bba25bf28fc9cf7dfd4c7b/biom-format-2.1.15.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.15 2026-10-05T21:07:42,816 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/52/9b/f3d2fcc1d0141e86e08330c7516d750662f8a3df40c7f5ef8d633fc485b1/biom_format-2.1.15-cp310-cp310-macosx_10_9_universal2.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2026-10-05T21:07:42,817 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/69/1a/8346a46e7b68aa49a7303d8cf9a12c7c08ee1d0a2142f1066c906a99def0/biom_format-2.1.15-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6) 2026-10-05T21:07:42,817 Skipping link: No binaries permitted for biom-format: 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https://files.pythonhosted.org/packages/88/fa/47b69b025eb7609ac17375e336731566477e05cc44d05f63b2ab894a8832/biom_format-2.1.18-cp39-cp39-macosx_11_0_arm64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.9) 2026-10-05T21:07:42,859 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/51/b3/fc8dd89cd68b427de7c0c617996c52aa3eea041067e7e1a26cc33e7433c9/biom_format-2.1.18-cp39-cp39-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.9) 2026-10-05T21:07:42,860 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/60/1f/8c4703c232d4fecd55b19b83754f60779d77ca3a8447acaade0018e77e53/biom_format-2.1.18-cp39-cp39-manylinux2014_aarch64.manylinux_2_17_aarch64.manylinux_2_28_aarch64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.9) 2026-10-05T21:07:42,860 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/97/c4/2baf7bed3de20594c8a539299cec61d6c46e174c4cdf84039ed6f2e6c395/biom_format-2.1.18-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/biom-format/) (requires-python:>=3.9) 2026-10-05T21:07:42,861 Found link https://files.pythonhosted.org/packages/f7/c4/58b24f5d1bf0fc00811d11852fe70d084c1dbbfaebb897af89487cb1a330/biom_format-2.1.18.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.9), version: 2.1.18 2026-10-05T21:07:42,862 Fetching project page and analyzing links: https://www.piwheels.org/simple/biom-format/ 2026-10-05T21:07:42,863 Getting page https://www.piwheels.org/simple/biom-format/ 2026-10-05T21:07:42,864 Found index url https://www.piwheels.org/simple 2026-10-05T21:07:43,072 Fetched page https://www.piwheels.org/simple/biom-format/ as text/html 2026-10-05T21:07:43,104 Skipping link: No binaries permitted for biom-format: 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https://archive1.piwheels.org/simple/biom-format/biom_format-2.0.0-cp37-cp37m-linux_armv6l.whl#sha256=7a626aba8ff823cc9f782efde594c9996cfb48f2c2b456a2ed55c88977f2d1d1 (from https://www.piwheels.org/simple/biom-format/) 2026-10-05T21:07:43,170 Skipping link: No binaries permitted for biom-format: https://archive1.piwheels.org/simple/biom-format/biom_format-2.0.0-cp35-cp35m-linux_armv7l.whl#sha256=117a559c6cc285a8c0e94138f1585e93ccef7862532d78e61d3f14d96ab4120f (from https://www.piwheels.org/simple/biom-format/) 2026-10-05T21:07:43,171 Skipping link: No binaries permitted for biom-format: https://archive1.piwheels.org/simple/biom-format/biom_format-2.0.0-cp35-cp35m-linux_armv6l.whl#sha256=117a559c6cc285a8c0e94138f1585e93ccef7862532d78e61d3f14d96ab4120f (from https://www.piwheels.org/simple/biom-format/) 2026-10-05T21:07:43,171 Skipping link: No binaries permitted for biom-format: https://archive1.piwheels.org/simple/biom-format/biom_format-2.0.0-cp34-cp34m-linux_armv6l.whl#sha256=65a3ba75376f8e5cacf4f89448fcc9ca10489d5a7203a89b71e8d9c71919fe33 (from https://www.piwheels.org/simple/biom-format/) 2026-10-05T21:07:43,172 Skipping link: No binaries permitted for biom-format: https://archive1.piwheels.org/simple/biom-format/biom_format-2.0.0-cp34-cp34m-linux_armv7l.whl#sha256=65a3ba75376f8e5cacf4f89448fcc9ca10489d5a7203a89b71e8d9c71919fe33 (from https://www.piwheels.org/simple/biom-format/) 2026-10-05T21:07:43,172 Skipping link: No binaries permitted for biom-format: https://archive1.piwheels.org/simple/biom-format/biom_format-2.0.0-cp39-cp39-linux_armv6l.whl#sha256=7f2584f3e1b8e8897d7c7b4fbaf097a44a847fda65a385f8bda36b9177394b68 (from https://www.piwheels.org/simple/biom-format/) 2026-10-05T21:07:43,173 Skipping link: No binaries permitted for biom-format: https://archive1.piwheels.org/simple/biom-format/biom_format-2.0.0-cp39-cp39-linux_armv7l.whl#sha256=7f2584f3e1b8e8897d7c7b4fbaf097a44a847fda65a385f8bda36b9177394b68 (from https://www.piwheels.org/simple/biom-format/) 2026-10-05T21:07:43,173 Skipping link: No binaries permitted for biom-format: https://archive1.piwheels.org/simple/biom-format/biom_format-1.3.1-py3-none-any.whl#sha256=f0b5649cb13509667e6ca75c84e68a1ff1de6716848e8d4f9a3ca8f8ca74b8df (from https://www.piwheels.org/simple/biom-format/) 2026-10-05T21:07:43,174 Skipping link: No binaries permitted for biom-format: https://archive1.piwheels.org/simple/biom-format/biom_format-1.3.0-py3-none-any.whl#sha256=ee9d81bea91a7c7da55697863c1b003aca4d14b7f7416fcb8c22e169e54aabe6 (from https://www.piwheels.org/simple/biom-format/) 2026-10-05T21:07:43,175 Skipping link: No binaries permitted for biom-format: https://archive1.piwheels.org/simple/biom-format/biom_format-1.2.0.dev0-py3-none-any.whl#sha256=1c6e81249da6f3e19dd7594733329820632b1b6b0355abe79af180116c3b8aba (from https://www.piwheels.org/simple/biom-format/) 2026-10-05T21:07:43,175 Skipping link: not a file: https://www.piwheels.org/simple/biom-format/ 2026-10-05T21:07:43,176 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2026-10-05T21:07:43,199 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2026-10-05T21:07:43,217 Collecting biom-format==2.1.18 2026-10-05T21:07:43,220 Created temporary directory: /tmp/pip-unpack-yxcrhn6t 2026-10-05T21:07:43,392 Downloading biom_format-2.1.18.tar.gz (11.7 MB) 2026-10-05T21:07:46,221 Added biom-format==2.1.18 from https://files.pythonhosted.org/packages/f7/c4/58b24f5d1bf0fc00811d11852fe70d084c1dbbfaebb897af89487cb1a330/biom_format-2.1.18.tar.gz to build tracker '/tmp/pip-build-tracker-0_fv22gs' 2026-10-05T21:07:46,231 Created temporary directory: /tmp/pip-build-env-2fr21mgz 2026-10-05T21:07:46,236 Installing build dependencies: started 2026-10-05T21:07:46,237 Running command pip subprocess to install build dependencies 2026-10-05T21:07:47,365 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-10-05T21:07:47,811 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-05T21:07:47,834 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-05T21:07:49,672 Collecting setuptools 2026-10-05T21:07:49,673 Obtaining dependency information for setuptools from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-10-05T21:07:49,697 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-10-05T21:07:49,944 Collecting wheel 2026-10-05T21:07:49,945 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-10-05T21:07:49,962 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-10-05T21:07:51,063 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/3a/be/650f9c091ef71cb01d735775d554e068752d3ff63d7943b26316dc401749/numpy-1.21.2.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-10-05T21:07:51,070 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/5f/d6/ad58ded26556eaeaa8c971e08b6466f17c4ac4d786cd3d800e26ce59cc01/numpy-1.21.3.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-10-05T21:07:51,077 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/fb/48/b0708ebd7718a8933f0d3937513ef8ef2f4f04529f1f66ca86d873043921/numpy-1.21.4.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-10-05T21:07:51,083 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/c2/a8/a924a09492bdfee8c2ec3094d0a13f2799800b4fdc9c890738aeeb12c72e/numpy-1.21.5.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-10-05T21:07:51,090 Link requires a different Python (3.11.2 not in: '>=3.7,<3.11'): https://files.pythonhosted.org/packages/45/b7/de7b8e67f2232c26af57c205aaad29fe17754f793404f59c8a730c7a191a/numpy-1.21.6.zip (from https://pypi.org/simple/numpy/) (requires-python:>=3.7,<3.11) 2026-10-05T21:07:51,541 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/d3/e1/f2fe8f6113a657a1da83b358b16755e528a602c6976a43724a88f42b482a/numpy-2.5.0rc1.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-10-05T21:07:51,550 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/e7/05/3d27272d30698dc0ecb7fdfaa41ad70303b444f81722bb99bce1d818638a/numpy-2.5.0.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-10-05T21:07:51,559 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/22/fd/89965aa4ac08c74998539fcbf24fa3540f3e15237fbeb6bcf9c908f4aade/numpy-2.5.1.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-10-05T21:07:51,572 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/9a/80/db0b4559e57ec36362bedbb05530a87fafbcb6067708c946967a41d449e7/numpy-2.5.2.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-10-05T21:07:51,586 Link requires a different Python (3.11.2 not in: '>=3.12'): https://files.pythonhosted.org/packages/13/01/11703282db468b85f6f7b8c7f22d058de5970d5c7e60a3a8aaa313c3de36/numpy-2.5.3.tar.gz (from https://pypi.org/simple/numpy/) (requires-python:>=3.12) 2026-10-05T21:07:51,940 Collecting numpy 2026-10-05T21:07:51,941 Obtaining dependency information for numpy from https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata 2026-10-05T21:07:51,958 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl.metadata (6.6 kB) 2026-10-05T21:07:54,175 Collecting cython 2026-10-05T21:07:54,176 Obtaining dependency information for cython from https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl.metadata 2026-10-05T21:07:54,195 Using cached https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl.metadata (28 kB) 2026-10-05T21:07:54,209 Discarding https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl#sha256=a6216b5b0b00e864c25ee582a0d29ae651cef2fb300b10673146bc47b5c1b8b1 (from https://www.piwheels.org/simple/cython/) (requires-python:>=3.9): Requested cython from https://www.piwheels.org/simple/cython/cython-3.3.0-cp311-cp311-linux_armv7l.whl#sha256=a6216b5b0b00e864c25ee582a0d29ae651cef2fb300b10673146bc47b5c1b8b1 has inconsistent Name: expected 'cython', but metadata has 'Cython' 2026-10-05T21:07:54,273 Using cached cython-3.3.0-cp39-abi3-manylinux2014_armv7l.manylinux_2_17_armv7l.manylinux_2_31_armv7l.whl (3.0 MB) 2026-10-05T21:07:54,554 Collecting packaging>=24.0 2026-10-05T21:07:54,555 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-10-05T21:07:54,568 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-10-05T21:07:54,770 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-05T21:07:55,249 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-10-05T21:07:55,373 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-05T21:07:55,448 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-05T21:07:55,512 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-05T21:07:55,995 Using cached https://www.piwheels.org/simple/numpy/numpy-2.4.6-cp311-cp311-linux_armv7l.whl (6.3 MB) 2026-10-05T21:07:56,208 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-05T21:07:56,280 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-05T21:07:59,107 Installing collected packages: setuptools, packaging, numpy, cython, wheel 2026-10-05T21:08:10,310 Creating /tmp/pip-build-env-2fr21mgz/overlay/local/bin 2026-10-05T21:08:10,312 changing mode of /tmp/pip-build-env-2fr21mgz/overlay/local/bin/f2py to 755 2026-10-05T21:08:10,314 changing mode of /tmp/pip-build-env-2fr21mgz/overlay/local/bin/numpy-config to 755 2026-10-05T21:08:13,550 changing mode of /tmp/pip-build-env-2fr21mgz/overlay/local/bin/cygdb to 755 2026-10-05T21:08:13,552 changing mode of /tmp/pip-build-env-2fr21mgz/overlay/local/bin/cython to 755 2026-10-05T21:08:13,554 changing mode of /tmp/pip-build-env-2fr21mgz/overlay/local/bin/cythonize to 755 2026-10-05T21:08:13,692 changing mode of /tmp/pip-build-env-2fr21mgz/overlay/local/bin/wheel to 755 2026-10-05T21:08:13,732 Successfully installed cython-3.3.0 numpy-2.4.6 packaging-26.3 setuptools-84.0.0 wheel-0.48.0 2026-10-05T21:08:14,227 Installing build dependencies: finished with status 'done' 2026-10-05T21:08:14,234 Getting requirements to build wheel: started 2026-10-05T21:08:14,235 Running command Getting requirements to build wheel 2026-10-05T21:08:20,731 [1/3] Cythonizing biom/_filter.pyx 2026-10-05T21:08:20,731 [2/3] Cythonizing biom/_subsample.pyx 2026-10-05T21:08:20,732 [3/3] Cythonizing biom/_transform.pyx 2026-10-05T21:08:20,841 /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-10-05T21:08:20,842 !! 2026-10-05T21:08:20,842 ******************************************************************************** 2026-10-05T21:08:20,843 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-10-05T21:08:20,844 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-10-05T21:08:20,844 or your builds will no longer be supported. 2026-10-05T21:08:20,845 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-10-05T21:08:20,845 ******************************************************************************** 2026-10-05T21:08:20,846 !! 2026-10-05T21:08:20,847 corresp(dist, value, root_dir) 2026-10-05T21:08:20,926 /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-10-05T21:08:20,926 !! 2026-10-05T21:08:20,927 ******************************************************************************** 2026-10-05T21:08:20,928 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-10-05T21:08:20,929 License :: OSI Approved :: BSD License 2026-10-05T21:08:20,930 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-10-05T21:08:20,930 ******************************************************************************** 2026-10-05T21:08:20,932 !! 2026-10-05T21:08:20,932 dist._finalize_license_expression() 2026-10-05T21:08:20,933 /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-10-05T21:08:20,934 !! 2026-10-05T21:08:20,935 ******************************************************************************** 2026-10-05T21:08:20,936 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-10-05T21:08:20,937 License :: OSI Approved :: BSD License 2026-10-05T21:08:20,938 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-10-05T21:08:20,939 ******************************************************************************** 2026-10-05T21:08:20,940 !! 2026-10-05T21:08:20,941 self._finalize_license_expression() 2026-10-05T21:08:20,942 running egg_info 2026-10-05T21:08:20,950 writing biom_format.egg-info/PKG-INFO 2026-10-05T21:08:20,954 writing dependency_links to biom_format.egg-info/dependency_links.txt 2026-10-05T21:08:20,956 writing entry points to biom_format.egg-info/entry_points.txt 2026-10-05T21:08:20,959 writing requirements to biom_format.egg-info/requires.txt 2026-10-05T21:08:20,960 writing top-level names to biom_format.egg-info/top_level.txt 2026-10-05T21:08:21,006 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,006 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,007 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,007 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,008 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,009 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,009 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,010 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,010 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,010 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,011 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,011 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,012 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,012 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,013 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:21,015 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2026-10-05T21:08:21,027 reading manifest template 'MANIFEST.in' 2026-10-05T21:08:21,036 warning: no directories found matching 'support_files' 2026-10-05T21:08:21,041 warning: no directories found matching 'tests/test_data' 2026-10-05T21:08:21,042 no previously-included directories found matching 'docs/_build' 2026-10-05T21:08:21,044 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-10-05T21:08:21,046 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-10-05T21:08:21,048 warning: no previously-included files matching '.git' found anywhere in distribution 2026-10-05T21:08:21,052 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-10-05T21:08:21,053 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2026-10-05T21:08:21,054 adding license file 'COPYING.txt' 2026-10-05T21:08:21,066 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2026-10-05T21:08:21,623 Getting requirements to build wheel: finished with status 'done' 2026-10-05T21:08:21,626 Created temporary directory: /tmp/pip-modern-metadata-nkttek4k 2026-10-05T21:08:21,629 Preparing metadata (pyproject.toml): started 2026-10-05T21:08:21,630 Running command Preparing metadata (pyproject.toml) 2026-10-05T21:08:28,029 [1/3] Cythonizing biom/_filter.pyx 2026-10-05T21:08:28,029 [2/3] Cythonizing biom/_subsample.pyx 2026-10-05T21:08:28,030 [3/3] Cythonizing biom/_transform.pyx 2026-10-05T21:08:28,112 /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-10-05T21:08:28,112 !! 2026-10-05T21:08:28,113 ******************************************************************************** 2026-10-05T21:08:28,114 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-10-05T21:08:28,114 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-10-05T21:08:28,115 or your builds will no longer be supported. 2026-10-05T21:08:28,116 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-10-05T21:08:28,116 ******************************************************************************** 2026-10-05T21:08:28,117 !! 2026-10-05T21:08:28,117 corresp(dist, value, root_dir) 2026-10-05T21:08:28,195 /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-10-05T21:08:28,196 !! 2026-10-05T21:08:28,197 ******************************************************************************** 2026-10-05T21:08:28,197 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-10-05T21:08:28,198 License :: OSI Approved :: BSD License 2026-10-05T21:08:28,199 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-10-05T21:08:28,200 ******************************************************************************** 2026-10-05T21:08:28,201 !! 2026-10-05T21:08:28,202 dist._finalize_license_expression() 2026-10-05T21:08:28,203 /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-10-05T21:08:28,203 !! 2026-10-05T21:08:28,204 ******************************************************************************** 2026-10-05T21:08:28,205 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-10-05T21:08:28,206 License :: OSI Approved :: BSD License 2026-10-05T21:08:28,207 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-10-05T21:08:28,208 ******************************************************************************** 2026-10-05T21:08:28,209 !! 2026-10-05T21:08:28,210 self._finalize_license_expression() 2026-10-05T21:08:28,210 running dist_info 2026-10-05T21:08:28,222 creating /tmp/pip-modern-metadata-nkttek4k/biom_format.egg-info 2026-10-05T21:08:28,223 writing /tmp/pip-modern-metadata-nkttek4k/biom_format.egg-info/PKG-INFO 2026-10-05T21:08:28,228 writing dependency_links to /tmp/pip-modern-metadata-nkttek4k/biom_format.egg-info/dependency_links.txt 2026-10-05T21:08:28,230 writing entry points to /tmp/pip-modern-metadata-nkttek4k/biom_format.egg-info/entry_points.txt 2026-10-05T21:08:28,232 writing requirements to /tmp/pip-modern-metadata-nkttek4k/biom_format.egg-info/requires.txt 2026-10-05T21:08:28,233 writing top-level names to /tmp/pip-modern-metadata-nkttek4k/biom_format.egg-info/top_level.txt 2026-10-05T21:08:28,235 writing manifest file '/tmp/pip-modern-metadata-nkttek4k/biom_format.egg-info/SOURCES.txt' 2026-10-05T21:08:28,278 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,279 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,280 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,280 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,281 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,281 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,282 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,282 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,283 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,283 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,284 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,284 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,285 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,285 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,286 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:28,287 reading manifest file '/tmp/pip-modern-metadata-nkttek4k/biom_format.egg-info/SOURCES.txt' 2026-10-05T21:08:28,289 reading manifest template 'MANIFEST.in' 2026-10-05T21:08:28,312 warning: no directories found matching 'support_files' 2026-10-05T21:08:28,321 warning: no directories found matching 'tests/test_data' 2026-10-05T21:08:28,322 no previously-included directories found matching 'docs/_build' 2026-10-05T21:08:28,324 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-10-05T21:08:28,325 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-10-05T21:08:28,326 warning: no previously-included files matching '.git' found anywhere in distribution 2026-10-05T21:08:28,329 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-10-05T21:08:28,330 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2026-10-05T21:08:28,331 adding license file 'COPYING.txt' 2026-10-05T21:08:28,340 writing manifest file '/tmp/pip-modern-metadata-nkttek4k/biom_format.egg-info/SOURCES.txt' 2026-10-05T21:08:28,341 creating '/tmp/pip-modern-metadata-nkttek4k/biom_format-2.1.18.dist-info' 2026-10-05T21:08:28,923 Preparing metadata (pyproject.toml): finished with status 'done' 2026-10-05T21:08:28,928 Source in /tmp/pip-wheel-h3xd0fuz/biom-format_b26bf6ac058243ddb1686edc56dddc42 has version 2.1.18, which satisfies requirement biom-format==2.1.18 from https://files.pythonhosted.org/packages/f7/c4/58b24f5d1bf0fc00811d11852fe70d084c1dbbfaebb897af89487cb1a330/biom_format-2.1.18.tar.gz 2026-10-05T21:08:28,929 Removed biom-format==2.1.18 from https://files.pythonhosted.org/packages/f7/c4/58b24f5d1bf0fc00811d11852fe70d084c1dbbfaebb897af89487cb1a330/biom_format-2.1.18.tar.gz from build tracker '/tmp/pip-build-tracker-0_fv22gs' 2026-10-05T21:08:28,935 Created temporary directory: /tmp/pip-unpack-l806dd99 2026-10-05T21:08:28,936 Building wheels for collected packages: biom-format 2026-10-05T21:08:28,941 Created temporary directory: /tmp/pip-wheel-_wbdo6y9 2026-10-05T21:08:28,942 Destination directory: /tmp/pip-wheel-_wbdo6y9 2026-10-05T21:08:28,944 Building wheel for biom-format (pyproject.toml): started 2026-10-05T21:08:28,945 Running command Building wheel for biom-format (pyproject.toml) 2026-10-05T21:08:35,262 [1/3] Cythonizing biom/_filter.pyx 2026-10-05T21:08:35,262 [2/3] Cythonizing biom/_subsample.pyx 2026-10-05T21:08:35,263 [3/3] Cythonizing biom/_transform.pyx 2026-10-05T21:08:35,342 /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-10-05T21:08:35,343 !! 2026-10-05T21:08:35,344 ******************************************************************************** 2026-10-05T21:08:35,344 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-10-05T21:08:35,346 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-10-05T21:08:35,346 or your builds will no longer be supported. 2026-10-05T21:08:35,347 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-10-05T21:08:35,348 ******************************************************************************** 2026-10-05T21:08:35,349 !! 2026-10-05T21:08:35,350 corresp(dist, value, root_dir) 2026-10-05T21:08:35,415 /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-10-05T21:08:35,416 !! 2026-10-05T21:08:35,417 ******************************************************************************** 2026-10-05T21:08:35,418 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-10-05T21:08:35,419 License :: OSI Approved :: BSD License 2026-10-05T21:08:35,420 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-10-05T21:08:35,421 ******************************************************************************** 2026-10-05T21:08:35,422 !! 2026-10-05T21:08:35,422 dist._finalize_license_expression() 2026-10-05T21:08:35,423 /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-10-05T21:08:35,424 !! 2026-10-05T21:08:35,425 ******************************************************************************** 2026-10-05T21:08:35,426 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-10-05T21:08:35,427 License :: OSI Approved :: BSD License 2026-10-05T21:08:35,428 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-10-05T21:08:35,428 ******************************************************************************** 2026-10-05T21:08:35,429 !! 2026-10-05T21:08:35,430 self._finalize_license_expression() 2026-10-05T21:08:35,430 running bdist_wheel 2026-10-05T21:08:35,448 running build 2026-10-05T21:08:35,448 running build_py 2026-10-05T21:08:35,456 creating build/lib.linux-armv7l-cpython-311/doc 2026-10-05T21:08:35,458 copying doc/conf.py -> build/lib.linux-armv7l-cpython-311/doc 2026-10-05T21:08:35,461 creating build/lib.linux-armv7l-cpython-311/biom 2026-10-05T21:08:35,462 copying biom/err.py -> build/lib.linux-armv7l-cpython-311/biom 2026-10-05T21:08:35,464 copying biom/__init__.py -> build/lib.linux-armv7l-cpython-311/biom 2026-10-05T21:08:35,466 copying biom/exception.py -> build/lib.linux-armv7l-cpython-311/biom 2026-10-05T21:08:35,468 copying biom/table.py -> build/lib.linux-armv7l-cpython-311/biom 2026-10-05T21:08:35,473 copying biom/util.py -> build/lib.linux-armv7l-cpython-311/biom 2026-10-05T21:08:35,475 copying biom/parse.py -> build/lib.linux-armv7l-cpython-311/biom 2026-10-05T21:08:35,481 creating build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:35,482 copying doc/sphinxext/numpydoc/numpydoc/docscrape.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:35,485 copying doc/sphinxext/numpydoc/numpydoc/numpydoc.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:35,488 copying doc/sphinxext/numpydoc/numpydoc/__init__.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:35,489 copying doc/sphinxext/numpydoc/numpydoc/plot_directive.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:35,492 copying doc/sphinxext/numpydoc/numpydoc/phantom_import.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:35,494 copying doc/sphinxext/numpydoc/numpydoc/docscrape_sphinx.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:35,497 copying doc/sphinxext/numpydoc/numpydoc/linkcode.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:35,499 copying doc/sphinxext/numpydoc/numpydoc/compiler_unparse.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:35,501 copying doc/sphinxext/numpydoc/numpydoc/comment_eater.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:35,504 copying doc/sphinxext/numpydoc/numpydoc/traitsdoc.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:35,506 creating build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:35,507 copying doc/sphinxext/numpydoc/numpydoc/tests/test_docscrape.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:35,510 copying doc/sphinxext/numpydoc/numpydoc/tests/test_linkcode.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:35,512 copying doc/sphinxext/numpydoc/numpydoc/tests/test_phantom_import.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:35,514 copying doc/sphinxext/numpydoc/numpydoc/tests/test_plot_directive.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:35,516 copying doc/sphinxext/numpydoc/numpydoc/tests/test_traitsdoc.py -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:35,519 creating build/lib.linux-armv7l-cpython-311/biom/assets 2026-10-05T21:08:35,520 copying biom/assets/exercise_api.py -> build/lib.linux-armv7l-cpython-311/biom/assets 2026-10-05T21:08:35,523 creating build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,524 copying biom/cli/uc_processor.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,526 copying biom/cli/table_validator.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,528 copying biom/cli/metadata_adder.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,530 copying biom/cli/metadata_exporter.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,532 copying biom/cli/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,534 copying biom/cli/table_summarizer.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,536 copying biom/cli/table_subsetter.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,538 copying biom/cli/table_normalizer.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,540 copying biom/cli/table_ids.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,542 copying biom/cli/installation_informer.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,544 copying biom/cli/table_converter.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,546 copying biom/cli/util.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,548 copying biom/cli/table_head.py -> build/lib.linux-armv7l-cpython-311/biom/cli 2026-10-05T21:08:35,550 creating build/lib.linux-armv7l-cpython-311/biom/tests 2026-10-05T21:08:35,551 copying biom/tests/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2026-10-05T21:08:35,553 copying biom/tests/test_table.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2026-10-05T21:08:35,558 copying biom/tests/test_err.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2026-10-05T21:08:35,560 copying biom/tests/test_util.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2026-10-05T21:08:35,563 copying biom/tests/long_lines.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2026-10-05T21:08:35,565 copying biom/tests/test_parse.py -> build/lib.linux-armv7l-cpython-311/biom/tests 2026-10-05T21:08:35,569 creating build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2026-10-05T21:08:35,570 copying biom/tests/test_data/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2026-10-05T21:08:35,573 creating build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2026-10-05T21:08:35,574 copying biom/tests/test_cli/test_show_install_info.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2026-10-05T21:08:35,577 copying biom/tests/test_cli/__init__.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2026-10-05T21:08:35,578 copying biom/tests/test_cli/test_table_normalizer.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2026-10-05T21:08:35,580 copying biom/tests/test_cli/test_table_converter.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2026-10-05T21:08:35,583 copying biom/tests/test_cli/test_subset_table.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2026-10-05T21:08:35,586 copying biom/tests/test_cli/test_uc_processor.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2026-10-05T21:08:35,588 copying biom/tests/test_cli/test_validate_table.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2026-10-05T21:08:35,590 copying biom/tests/test_cli/test_summarize_table.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2026-10-05T21:08:35,593 copying biom/tests/test_cli/test_add_metadata.py -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli 2026-10-05T21:08:35,596 running egg_info 2026-10-05T21:08:35,608 writing biom_format.egg-info/PKG-INFO 2026-10-05T21:08:35,612 writing dependency_links to biom_format.egg-info/dependency_links.txt 2026-10-05T21:08:35,613 writing entry points to biom_format.egg-info/entry_points.txt 2026-10-05T21:08:35,615 writing requirements to biom_format.egg-info/requires.txt 2026-10-05T21:08:35,617 writing top-level names to biom_format.egg-info/top_level.txt 2026-10-05T21:08:35,638 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,638 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,639 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,639 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,640 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,640 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,641 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,641 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,642 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,642 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,643 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,643 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/arrayscalars.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,644 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarrayobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,645 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ndarraytypes.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,645 dependency /tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include/numpy/ufuncobject.h won't be automatically included in the manifest: the path must be relative 2026-10-05T21:08:35,646 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2026-10-05T21:08:35,658 reading manifest template 'MANIFEST.in' 2026-10-05T21:08:35,667 warning: no directories found matching 'support_files' 2026-10-05T21:08:35,672 warning: no directories found matching 'tests/test_data' 2026-10-05T21:08:35,673 no previously-included directories found matching 'docs/_build' 2026-10-05T21:08:35,675 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-10-05T21:08:35,677 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-10-05T21:08:35,679 warning: no previously-included files matching '.git' found anywhere in distribution 2026-10-05T21:08:35,682 warning: no previously-included files matching '*.so' found anywhere in distribution 2026-10-05T21:08:35,684 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2026-10-05T21:08:35,684 adding license file 'COPYING.txt' 2026-10-05T21:08:35,696 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2026-10-05T21:08:35,716 creating build/lib.linux-armv7l-cpython-311/examples 2026-10-05T21:08:35,717 copying examples/min_sparse_otu_table.biom -> build/lib.linux-armv7l-cpython-311/examples 2026-10-05T21:08:35,719 copying examples/min_sparse_otu_table_hdf5.biom -> build/lib.linux-armv7l-cpython-311/examples 2026-10-05T21:08:35,722 copying examples/obs_md.txt -> build/lib.linux-armv7l-cpython-311/examples 2026-10-05T21:08:35,724 copying examples/rich_sparse_otu_table.biom -> build/lib.linux-armv7l-cpython-311/examples 2026-10-05T21:08:35,727 copying examples/rich_sparse_otu_table_hdf5.biom -> build/lib.linux-armv7l-cpython-311/examples 2026-10-05T21:08:35,730 copying examples/rich_sparse_otu_table_hdf5_group_metadata.biom -> build/lib.linux-armv7l-cpython-311/examples 2026-10-05T21:08:35,733 copying examples/sam_md.txt -> build/lib.linux-armv7l-cpython-311/examples 2026-10-05T21:08:35,735 creating build/lib.linux-armv7l-cpython-311/licenses 2026-10-05T21:08:35,736 copying licenses/numpydoc.txt -> build/lib.linux-armv7l-cpython-311/licenses 2026-10-05T21:08:35,738 copying licenses/scikit-learn.txt -> build/lib.linux-armv7l-cpython-311/licenses 2026-10-05T21:08:35,740 copying licenses/scipy.txt -> build/lib.linux-armv7l-cpython-311/licenses 2026-10-05T21:08:35,742 copying doc/BIOM_LICENSE.rst -> build/lib.linux-armv7l-cpython-311/doc 2026-10-05T21:08:35,744 copying doc/Makefile -> build/lib.linux-armv7l-cpython-311/doc 2026-10-05T21:08:35,747 copying doc/index.rst -> build/lib.linux-armv7l-cpython-311/doc 2026-10-05T21:08:35,750 copying biom/_filter.pyx -> build/lib.linux-armv7l-cpython-311/biom 2026-10-05T21:08:35,752 copying biom/_subsample.pyx -> build/lib.linux-armv7l-cpython-311/biom 2026-10-05T21:08:35,754 copying biom/_transform.pyx -> build/lib.linux-armv7l-cpython-311/biom 2026-10-05T21:08:35,756 creating build/lib.linux-armv7l-cpython-311/doc/_templates 2026-10-05T21:08:35,757 copying doc/_templates/layout.html -> build/lib.linux-armv7l-cpython-311/doc/_templates 2026-10-05T21:08:35,759 creating build/lib.linux-armv7l-cpython-311/doc/documentation 2026-10-05T21:08:35,761 copying doc/documentation/adding_metadata.rst -> build/lib.linux-armv7l-cpython-311/doc/documentation 2026-10-05T21:08:35,763 copying doc/documentation/biom_conversion.rst -> build/lib.linux-armv7l-cpython-311/doc/documentation 2026-10-05T21:08:35,766 copying doc/documentation/biom_format.rst -> build/lib.linux-armv7l-cpython-311/doc/documentation 2026-10-05T21:08:35,768 copying doc/documentation/index.rst -> build/lib.linux-armv7l-cpython-311/doc/documentation 2026-10-05T21:08:35,770 copying doc/documentation/quick_usage_examples.rst -> build/lib.linux-armv7l-cpython-311/doc/documentation 2026-10-05T21:08:35,773 copying doc/documentation/summarizing_biom_tables.rst -> build/lib.linux-armv7l-cpython-311/doc/documentation 2026-10-05T21:08:35,775 copying doc/documentation/table_objects.rst -> build/lib.linux-armv7l-cpython-311/doc/documentation 2026-10-05T21:08:35,777 creating build/lib.linux-armv7l-cpython-311/doc/_static 2026-10-05T21:08:35,778 copying doc/_static/biom-format.png -> build/lib.linux-armv7l-cpython-311/doc/_static 2026-10-05T21:08:35,781 copying doc/_static/copybutton.js -> build/lib.linux-armv7l-cpython-311/doc/_static 2026-10-05T21:08:35,783 copying doc/sphinxext/numpydoc/LICENSE.txt -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc 2026-10-05T21:08:35,786 copying doc/sphinxext/numpydoc/README.rst -> build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc 2026-10-05T21:08:35,788 creating build/lib.linux-armv7l-cpython-311/doc/_templates/autosummary 2026-10-05T21:08:35,789 copying doc/_templates/autosummary/attribute.rst -> build/lib.linux-armv7l-cpython-311/doc/_templates/autosummary 2026-10-05T21:08:35,792 copying doc/_templates/autosummary/class.rst -> build/lib.linux-armv7l-cpython-311/doc/_templates/autosummary 2026-10-05T21:08:35,794 copying doc/_templates/autosummary/method.rst -> build/lib.linux-armv7l-cpython-311/doc/_templates/autosummary 2026-10-05T21:08:35,796 creating build/lib.linux-armv7l-cpython-311/doc/documentation/format_versions 2026-10-05T21:08:35,797 copying doc/documentation/format_versions/biom-1.0.rst -> build/lib.linux-armv7l-cpython-311/doc/documentation/format_versions 2026-10-05T21:08:35,800 copying doc/documentation/format_versions/biom-2.0.rst -> build/lib.linux-armv7l-cpython-311/doc/documentation/format_versions 2026-10-05T21:08:35,802 copying doc/documentation/format_versions/biom-2.1.rst -> build/lib.linux-armv7l-cpython-311/doc/documentation/format_versions 2026-10-05T21:08:35,805 copying biom/assets/exercise_cli.sh -> build/lib.linux-armv7l-cpython-311/biom/assets 2026-10-05T21:08:35,807 copying biom/tests/test_data/bad_table.txt -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2026-10-05T21:08:35,809 copying biom/tests/test_data/bad_table.txt.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2026-10-05T21:08:35,811 copying biom/tests/test_data/edgecase_issue_952.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2026-10-05T21:08:35,815 copying biom/tests/test_data/empty.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2026-10-05T21:08:35,818 copying biom/tests/test_data/no-contents.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2026-10-05T21:08:35,820 copying biom/tests/test_data/test.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2026-10-05T21:08:35,824 copying biom/tests/test_data/test.json -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2026-10-05T21:08:35,826 copying biom/tests/test_data/test.json.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2026-10-05T21:08:35,828 copying biom/tests/test_data/test_grp_metadata.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_data 2026-10-05T21:08:35,832 creating build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:35,833 copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:35,842 copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:35,854 copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:35,900 copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:35,916 copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,238 copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,314 copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,317 copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,325 copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,333 copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,343 copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,393 copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,425 copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,429 copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,437 copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,440 copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,448 copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,454 copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,463 copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,466 copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,474 copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,477 copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,485 copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,489 copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,499 copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,503 copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,511 copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,519 copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,529 copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,571 copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,638 copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,641 copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,645 copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,648 copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,652 copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,658 copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,662 copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,664 copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,668 copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,670 copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,674 copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,677 copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,680 copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,683 copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,687 copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,689 copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,693 copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,695 copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,699 copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,702 copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,710 copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,713 copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,721 copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,729 copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,740 copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,742 copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,746 copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,748 copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,752 copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,755 copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,760 copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,762 copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,766 copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,768 copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,772 copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,774 copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,778 copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,781 copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,784 copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,786 copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,790 copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,792 copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,795 copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,799 copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,809 copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,812 copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,820 copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,823 copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,831 copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,834 copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,837 copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,839 copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,843 copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,845 copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,849 copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,851 copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,854 copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,856 copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,859 copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,861 copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,864 copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,866 copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,869 copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,871 copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,875 copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,877 copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables 2026-10-05T21:08:36,880 creating build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data 2026-10-05T21:08:36,881 copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data 2026-10-05T21:08:36,883 copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data 2026-10-05T21:08:36,885 copying biom/tests/test_cli/test_data/test.biom -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data 2026-10-05T21:08:36,889 copying biom/tests/test_cli/test_data/test.json -> build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data 2026-10-05T21:08:36,899 running build_ext 2026-10-05T21:08:36,909 building 'biom._filter' extension 2026-10-05T21:08:36,911 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c biom/_filter.c -o build/temp.linux-armv7l-cpython-311/biom/_filter.o 2026-10-05T21:08:46,137 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/biom/_filter.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biom/_filter.cpython-311-arm-linux-gnueabihf.so 2026-10-05T21:08:46,265 building 'biom._transform' extension 2026-10-05T21:08:46,266 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c biom/_transform.c -o build/temp.linux-armv7l-cpython-311/biom/_transform.o 2026-10-05T21:08:51,459 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/biom/_transform.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biom/_transform.cpython-311-arm-linux-gnueabihf.so 2026-10-05T21:08:51,575 building 'biom._subsample' extension 2026-10-05T21:08:51,576 arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2fr21mgz/overlay/local/lib/python3.11/dist-packages/numpy/_core/include -I/usr/include/python3.11 -c biom/_subsample.c -o build/temp.linux-armv7l-cpython-311/biom/_subsample.o 2026-10-05T21:08:58,956 arm-linux-gnueabihf-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 build/temp.linux-armv7l-cpython-311/biom/_subsample.o -L/usr/lib/arm-linux-gnueabihf -o build/lib.linux-armv7l-cpython-311/biom/_subsample.cpython-311-arm-linux-gnueabihf.so 2026-10-05T21:08:59,087 installing to build/bdist.linux-armv7l/wheel 2026-10-05T21:08:59,087 running install 2026-10-05T21:08:59,110 running install_lib 2026-10-05T21:08:59,116 creating build/bdist.linux-armv7l/wheel 2026-10-05T21:08:59,119 creating build/bdist.linux-armv7l/wheel/examples 2026-10-05T21:08:59,120 copying build/lib.linux-armv7l-cpython-311/examples/rich_sparse_otu_table_hdf5_group_metadata.biom -> build/bdist.linux-armv7l/wheel/./examples 2026-10-05T21:08:59,123 copying build/lib.linux-armv7l-cpython-311/examples/min_sparse_otu_table.biom -> build/bdist.linux-armv7l/wheel/./examples 2026-10-05T21:08:59,125 copying build/lib.linux-armv7l-cpython-311/examples/obs_md.txt -> build/bdist.linux-armv7l/wheel/./examples 2026-10-05T21:08:59,127 copying build/lib.linux-armv7l-cpython-311/examples/rich_sparse_otu_table.biom -> build/bdist.linux-armv7l/wheel/./examples 2026-10-05T21:08:59,129 copying build/lib.linux-armv7l-cpython-311/examples/sam_md.txt -> build/bdist.linux-armv7l/wheel/./examples 2026-10-05T21:08:59,131 copying build/lib.linux-armv7l-cpython-311/examples/min_sparse_otu_table_hdf5.biom -> build/bdist.linux-armv7l/wheel/./examples 2026-10-05T21:08:59,134 copying build/lib.linux-armv7l-cpython-311/examples/rich_sparse_otu_table_hdf5.biom -> build/bdist.linux-armv7l/wheel/./examples 2026-10-05T21:08:59,137 creating build/bdist.linux-armv7l/wheel/licenses 2026-10-05T21:08:59,138 copying build/lib.linux-armv7l-cpython-311/licenses/numpydoc.txt -> build/bdist.linux-armv7l/wheel/./licenses 2026-10-05T21:08:59,140 copying build/lib.linux-armv7l-cpython-311/licenses/scipy.txt -> build/bdist.linux-armv7l/wheel/./licenses 2026-10-05T21:08:59,142 copying build/lib.linux-armv7l-cpython-311/licenses/scikit-learn.txt -> build/bdist.linux-armv7l/wheel/./licenses 2026-10-05T21:08:59,144 creating build/bdist.linux-armv7l/wheel/doc 2026-10-05T21:08:59,145 copying build/lib.linux-armv7l-cpython-311/doc/Makefile -> build/bdist.linux-armv7l/wheel/./doc 2026-10-05T21:08:59,148 creating build/bdist.linux-armv7l/wheel/doc/sphinxext 2026-10-05T21:08:59,150 creating build/bdist.linux-armv7l/wheel/doc/sphinxext/numpydoc 2026-10-05T21:08:59,151 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/README.rst -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc 2026-10-05T21:08:59,153 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/LICENSE.txt -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc 2026-10-05T21:08:59,156 creating build/bdist.linux-armv7l/wheel/doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:59,157 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/docscrape.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:59,160 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/numpydoc.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:59,162 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/__init__.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:59,164 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/plot_directive.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:59,166 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/phantom_import.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:59,169 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/docscrape_sphinx.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:59,171 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/linkcode.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:59,173 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/compiler_unparse.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:59,177 creating build/bdist.linux-armv7l/wheel/doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:59,178 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/tests/test_docscrape.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:59,180 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/tests/test_linkcode.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:59,182 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/tests/test_phantom_import.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:59,184 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/tests/test_plot_directive.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:59,186 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/tests/test_traitsdoc.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc/tests 2026-10-05T21:08:59,188 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/comment_eater.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:59,190 copying build/lib.linux-armv7l-cpython-311/doc/sphinxext/numpydoc/numpydoc/traitsdoc.py -> build/bdist.linux-armv7l/wheel/./doc/sphinxext/numpydoc/numpydoc 2026-10-05T21:08:59,193 creating build/bdist.linux-armv7l/wheel/doc/_templates 2026-10-05T21:08:59,194 copying build/lib.linux-armv7l-cpython-311/doc/_templates/layout.html -> build/bdist.linux-armv7l/wheel/./doc/_templates 2026-10-05T21:08:59,197 creating build/bdist.linux-armv7l/wheel/doc/_templates/autosummary 2026-10-05T21:08:59,198 copying build/lib.linux-armv7l-cpython-311/doc/_templates/autosummary/attribute.rst -> build/bdist.linux-armv7l/wheel/./doc/_templates/autosummary 2026-10-05T21:08:59,199 copying build/lib.linux-armv7l-cpython-311/doc/_templates/autosummary/method.rst -> build/bdist.linux-armv7l/wheel/./doc/_templates/autosummary 2026-10-05T21:08:59,201 copying build/lib.linux-armv7l-cpython-311/doc/_templates/autosummary/class.rst -> build/bdist.linux-armv7l/wheel/./doc/_templates/autosummary 2026-10-05T21:08:59,203 copying build/lib.linux-armv7l-cpython-311/doc/BIOM_LICENSE.rst -> build/bdist.linux-armv7l/wheel/./doc 2026-10-05T21:08:59,205 creating build/bdist.linux-armv7l/wheel/doc/documentation 2026-10-05T21:08:59,207 creating build/bdist.linux-armv7l/wheel/doc/documentation/format_versions 2026-10-05T21:08:59,208 copying build/lib.linux-armv7l-cpython-311/doc/documentation/format_versions/biom-1.0.rst -> build/bdist.linux-armv7l/wheel/./doc/documentation/format_versions 2026-10-05T21:08:59,211 copying build/lib.linux-armv7l-cpython-311/doc/documentation/format_versions/biom-2.0.rst -> build/bdist.linux-armv7l/wheel/./doc/documentation/format_versions 2026-10-05T21:08:59,213 copying build/lib.linux-armv7l-cpython-311/doc/documentation/format_versions/biom-2.1.rst -> build/bdist.linux-armv7l/wheel/./doc/documentation/format_versions 2026-10-05T21:08:59,216 copying build/lib.linux-armv7l-cpython-311/doc/documentation/summarizing_biom_tables.rst -> build/bdist.linux-armv7l/wheel/./doc/documentation 2026-10-05T21:08:59,218 copying build/lib.linux-armv7l-cpython-311/doc/documentation/biom_format.rst -> build/bdist.linux-armv7l/wheel/./doc/documentation 2026-10-05T21:08:59,220 copying build/lib.linux-armv7l-cpython-311/doc/documentation/biom_conversion.rst -> build/bdist.linux-armv7l/wheel/./doc/documentation 2026-10-05T21:08:59,222 copying build/lib.linux-armv7l-cpython-311/doc/documentation/adding_metadata.rst -> build/bdist.linux-armv7l/wheel/./doc/documentation 2026-10-05T21:08:59,224 copying build/lib.linux-armv7l-cpython-311/doc/documentation/quick_usage_examples.rst -> build/bdist.linux-armv7l/wheel/./doc/documentation 2026-10-05T21:08:59,226 copying build/lib.linux-armv7l-cpython-311/doc/documentation/table_objects.rst -> build/bdist.linux-armv7l/wheel/./doc/documentation 2026-10-05T21:08:59,228 copying build/lib.linux-armv7l-cpython-311/doc/documentation/index.rst -> build/bdist.linux-armv7l/wheel/./doc/documentation 2026-10-05T21:08:59,230 copying build/lib.linux-armv7l-cpython-311/doc/conf.py -> build/bdist.linux-armv7l/wheel/./doc 2026-10-05T21:08:59,233 creating build/bdist.linux-armv7l/wheel/doc/_static 2026-10-05T21:08:59,234 copying build/lib.linux-armv7l-cpython-311/doc/_static/copybutton.js -> build/bdist.linux-armv7l/wheel/./doc/_static 2026-10-05T21:08:59,236 copying build/lib.linux-armv7l-cpython-311/doc/_static/biom-format.png -> build/bdist.linux-armv7l/wheel/./doc/_static 2026-10-05T21:08:59,238 copying build/lib.linux-armv7l-cpython-311/doc/index.rst -> build/bdist.linux-armv7l/wheel/./doc 2026-10-05T21:08:59,241 creating build/bdist.linux-armv7l/wheel/biom 2026-10-05T21:08:59,243 creating build/bdist.linux-armv7l/wheel/biom/assets 2026-10-05T21:08:59,244 copying build/lib.linux-armv7l-cpython-311/biom/assets/exercise_cli.sh -> build/bdist.linux-armv7l/wheel/./biom/assets 2026-10-05T21:08:59,247 copying build/lib.linux-armv7l-cpython-311/biom/assets/exercise_api.py -> build/bdist.linux-armv7l/wheel/./biom/assets 2026-10-05T21:08:59,249 copying build/lib.linux-armv7l-cpython-311/biom/err.py -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:08:59,251 copying build/lib.linux-armv7l-cpython-311/biom/_filter.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:08:59,266 copying build/lib.linux-armv7l-cpython-311/biom/_subsample.pyx -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:08:59,268 copying build/lib.linux-armv7l-cpython-311/biom/__init__.py -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:08:59,270 copying build/lib.linux-armv7l-cpython-311/biom/_subsample.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:08:59,283 copying build/lib.linux-armv7l-cpython-311/biom/exception.py -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:08:59,285 copying build/lib.linux-armv7l-cpython-311/biom/_filter.pyx -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:08:59,287 copying build/lib.linux-armv7l-cpython-311/biom/table.py -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:08:59,292 copying build/lib.linux-armv7l-cpython-311/biom/util.py -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:08:59,295 creating build/bdist.linux-armv7l/wheel/biom/cli 2026-10-05T21:08:59,296 copying build/lib.linux-armv7l-cpython-311/biom/cli/uc_processor.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,298 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_validator.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,301 copying build/lib.linux-armv7l-cpython-311/biom/cli/metadata_adder.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,303 copying build/lib.linux-armv7l-cpython-311/biom/cli/metadata_exporter.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,305 copying build/lib.linux-armv7l-cpython-311/biom/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,307 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_summarizer.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,309 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_subsetter.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,311 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_normalizer.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,313 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_ids.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,315 copying build/lib.linux-armv7l-cpython-311/biom/cli/installation_informer.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,317 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_converter.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,319 copying build/lib.linux-armv7l-cpython-311/biom/cli/util.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,321 copying build/lib.linux-armv7l-cpython-311/biom/cli/table_head.py -> build/bdist.linux-armv7l/wheel/./biom/cli 2026-10-05T21:08:59,323 copying build/lib.linux-armv7l-cpython-311/biom/parse.py -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:08:59,326 copying build/lib.linux-armv7l-cpython-311/biom/_transform.cpython-311-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:08:59,332 creating build/bdist.linux-armv7l/wheel/biom/tests 2026-10-05T21:08:59,334 creating build/bdist.linux-armv7l/wheel/biom/tests/test_data 2026-10-05T21:08:59,335 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/test.json -> build/bdist.linux-armv7l/wheel/./biom/tests/test_data 2026-10-05T21:08:59,337 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/empty.biom -> build/bdist.linux-armv7l/wheel/./biom/tests/test_data 2026-10-05T21:08:59,340 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/edgecase_issue_952.biom -> build/bdist.linux-armv7l/wheel/./biom/tests/test_data 2026-10-05T21:08:59,344 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/./biom/tests/test_data 2026-10-05T21:08:59,345 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/test.biom -> build/bdist.linux-armv7l/wheel/./biom/tests/test_data 2026-10-05T21:08:59,348 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/test.json.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/test_data 2026-10-05T21:08:59,349 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/no-contents.biom -> build/bdist.linux-armv7l/wheel/./biom/tests/test_data 2026-10-05T21:08:59,351 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/bad_table.txt.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/test_data 2026-10-05T21:08:59,353 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/bad_table.txt -> build/bdist.linux-armv7l/wheel/./biom/tests/test_data 2026-10-05T21:08:59,354 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_data/test_grp_metadata.biom -> build/bdist.linux-armv7l/wheel/./biom/tests/test_data 2026-10-05T21:08:59,357 copying build/lib.linux-armv7l-cpython-311/biom/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./biom/tests 2026-10-05T21:08:59,358 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_table.py -> build/bdist.linux-armv7l/wheel/./biom/tests 2026-10-05T21:08:59,365 creating build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2026-10-05T21:08:59,366 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_show_install_info.py -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli 2026-10-05T21:08:59,368 creating build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2026-10-05T21:08:59,369 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data/test.json -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli/test_data 2026-10-05T21:08:59,371 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data/test.biom -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli/test_data 2026-10-05T21:08:59,374 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli/test_data 2026-10-05T21:08:59,376 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli/test_data 2026-10-05T21:08:59,379 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/__init__.py -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli 2026-10-05T21:08:59,381 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_table_normalizer.py -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli 2026-10-05T21:08:59,382 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_table_converter.py -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli 2026-10-05T21:08:59,385 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_subset_table.py -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli 2026-10-05T21:08:59,387 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_uc_processor.py -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli 2026-10-05T21:08:59,389 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_validate_table.py -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli 2026-10-05T21:08:59,392 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_summarize_table.py -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli 2026-10-05T21:08:59,394 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_cli/test_add_metadata.py -> build/bdist.linux-armv7l/wheel/./biom/tests/test_cli 2026-10-05T21:08:59,396 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_err.py -> build/bdist.linux-armv7l/wheel/./biom/tests 2026-10-05T21:08:59,399 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_util.py -> build/bdist.linux-armv7l/wheel/./biom/tests 2026-10-05T21:08:59,401 copying build/lib.linux-armv7l-cpython-311/biom/tests/long_lines.py -> build/bdist.linux-armv7l/wheel/./biom/tests 2026-10-05T21:08:59,405 creating build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2026-10-05T21:08:59,406 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,410 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,418 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,420 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,423 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,426 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,427 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,431 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,434 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,437 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,444 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,447 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,449 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,451 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,454 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,502 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,505 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,507 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,509 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,552 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,558 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,561 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,575 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,582 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,662 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,672 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,677 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,680 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,687 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,697 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,707 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,715 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,722 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,725 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,730 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,782 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,784 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,790 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,791 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,822 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,824 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,827 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,830 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,837 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,839 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,852 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,854 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,855 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,864 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,866 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,868 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,874 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,877 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,879 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,882 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,885 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,928 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:08:59,932 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,284 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,286 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,290 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,293 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,295 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,298 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,301 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,305 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,309 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,312 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,314 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,317 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,324 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,331 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,334 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,342 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,344 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,358 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,360 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,362 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,368 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,376 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,379 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,382 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,385 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,388 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,396 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,399 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,401 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,404 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,408 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,411 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,415 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,418 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,421 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,424 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,432 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,435 copying build/lib.linux-armv7l-cpython-311/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/./biom/tests/bench_tables 2026-10-05T21:09:00,438 copying build/lib.linux-armv7l-cpython-311/biom/tests/test_parse.py -> build/bdist.linux-armv7l/wheel/./biom/tests 2026-10-05T21:09:00,441 copying build/lib.linux-armv7l-cpython-311/biom/_transform.pyx -> build/bdist.linux-armv7l/wheel/./biom 2026-10-05T21:09:00,443 running install_egg_info 2026-10-05T21:09:00,450 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/./biom_format-2.1.18-py3.11.egg-info 2026-10-05T21:09:00,463 running install_scripts 2026-10-05T21:09:00,484 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.18.dist-info/WHEEL 2026-10-05T21:09:00,487 creating '/tmp/pip-wheel-_wbdo6y9/.tmp-kx_xfgp1/biom_format-2.1.18-cp311-cp311-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-10-05T21:09:00,490 adding 'biom/__init__.py' 2026-10-05T21:09:00,588 adding 'biom/_filter.cpython-311-arm-linux-gnueabihf.so' 2026-10-05T21:09:00,593 adding 'biom/_filter.pyx' 2026-10-05T21:09:00,669 adding 'biom/_subsample.cpython-311-arm-linux-gnueabihf.so' 2026-10-05T21:09:00,673 adding 'biom/_subsample.pyx' 2026-10-05T21:09:00,731 adding 'biom/_transform.cpython-311-arm-linux-gnueabihf.so' 2026-10-05T21:09:00,735 adding 'biom/_transform.pyx' 2026-10-05T21:09:00,738 adding 'biom/err.py' 2026-10-05T21:09:00,739 adding 'biom/exception.py' 2026-10-05T21:09:00,743 adding 'biom/parse.py' 2026-10-05T21:09:00,765 adding 'biom/table.py' 2026-10-05T21:09:00,770 adding 'biom/util.py' 2026-10-05T21:09:00,772 adding 'biom/assets/exercise_api.py' 2026-10-05T21:09:00,774 adding 'biom/assets/exercise_cli.sh' 2026-10-05T21:09:00,776 adding 'biom/cli/__init__.py' 2026-10-05T21:09:00,778 adding 'biom/cli/installation_informer.py' 2026-10-05T21:09:00,780 adding 'biom/cli/metadata_adder.py' 2026-10-05T21:09:00,782 adding 'biom/cli/metadata_exporter.py' 2026-10-05T21:09:00,784 adding 'biom/cli/table_converter.py' 2026-10-05T21:09:00,785 adding 'biom/cli/table_head.py' 2026-10-05T21:09:00,787 adding 'biom/cli/table_ids.py' 2026-10-05T21:09:00,788 adding 'biom/cli/table_normalizer.py' 2026-10-05T21:09:00,790 adding 'biom/cli/table_subsetter.py' 2026-10-05T21:09:00,791 adding 'biom/cli/table_summarizer.py' 2026-10-05T21:09:00,794 adding 'biom/cli/table_validator.py' 2026-10-05T21:09:00,795 adding 'biom/cli/uc_processor.py' 2026-10-05T21:09:00,797 adding 'biom/cli/util.py' 2026-10-05T21:09:00,798 adding 'biom/tests/__init__.py' 2026-10-05T21:09:00,800 adding 'biom/tests/long_lines.py' 2026-10-05T21:09:00,801 adding 'biom/tests/test_err.py' 2026-10-05T21:09:00,805 adding 'biom/tests/test_parse.py' 2026-10-05T21:09:00,820 adding 'biom/tests/test_table.py' 2026-10-05T21:09:00,823 adding 'biom/tests/test_util.py' 2026-10-05T21:09:00,836 adding 'biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz' 2026-10-05T21:09:00,939 adding 'biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:01,020 adding 'biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz' 2026-10-05T21:09:01,155 adding 'biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:01,691 adding 'biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz' 2026-10-05T21:09:02,171 adding 'biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:02,205 adding 'biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz' 2026-10-05T21:09:02,262 adding 'biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:02,293 adding 'biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz' 2026-10-05T21:09:02,366 adding 'biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:02,613 adding 'biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz' 2026-10-05T21:09:02,873 adding 'biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:02,887 adding 'biom/tests/bench_tables/10000x100x0.001_bench.biom.gz' 2026-10-05T21:09:02,936 adding 'biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:02,942 adding 'biom/tests/bench_tables/10000x100x0.010_bench.biom.gz' 2026-10-05T21:09:02,993 adding 'biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:03,013 adding 'biom/tests/bench_tables/10000x100x0.100_bench.biom.gz' 2026-10-05T21:09:03,077 adding 'biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:03,081 adding 'biom/tests/bench_tables/10000x10x0.001_bench.biom.gz' 2026-10-05T21:09:03,130 adding 'biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:03,134 adding 'biom/tests/bench_tables/10000x10x0.010_bench.biom.gz' 2026-10-05T21:09:03,182 adding 'biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:03,188 adding 'biom/tests/bench_tables/10000x10x0.100_bench.biom.gz' 2026-10-05T21:09:03,238 adding 'biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:03,245 adding 'biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz' 2026-10-05T21:09:03,299 adding 'biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:03,338 adding 'biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz' 2026-10-05T21:09:03,416 adding 'biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:03,712 adding 'biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz' 2026-10-05T21:09:04,046 adding 'biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,063 adding 'biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz' 2026-10-05T21:09:04,073 adding 'biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:04,076 adding 'biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz' 2026-10-05T21:09:04,086 adding 'biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:04,095 adding 'biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz' 2026-10-05T21:09:04,108 adding 'biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,110 adding 'biom/tests/bench_tables/1000x100x0.001_bench.biom.gz' 2026-10-05T21:09:04,116 adding 'biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:04,118 adding 'biom/tests/bench_tables/1000x100x0.010_bench.biom.gz' 2026-10-05T21:09:04,124 adding 'biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:04,128 adding 'biom/tests/bench_tables/1000x100x0.100_bench.biom.gz' 2026-10-05T21:09:04,135 adding 'biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,137 adding 'biom/tests/bench_tables/1000x10x0.001_bench.biom.gz' 2026-10-05T21:09:04,143 adding 'biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:04,145 adding 'biom/tests/bench_tables/1000x10x0.010_bench.biom.gz' 2026-10-05T21:09:04,150 adding 'biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:04,152 adding 'biom/tests/bench_tables/1000x10x0.100_bench.biom.gz' 2026-10-05T21:09:04,158 adding 'biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,161 adding 'biom/tests/bench_tables/100x10000x0.001_bench.biom.gz' 2026-10-05T21:09:04,209 adding 'biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:04,216 adding 'biom/tests/bench_tables/100x10000x0.010_bench.biom.gz' 2026-10-05T21:09:04,267 adding 'biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:04,299 adding 'biom/tests/bench_tables/100x10000x0.100_bench.biom.gz' 2026-10-05T21:09:04,374 adding 'biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,378 adding 'biom/tests/bench_tables/100x1000x0.001_bench.biom.gz' 2026-10-05T21:09:04,384 adding 'biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:04,386 adding 'biom/tests/bench_tables/100x1000x0.010_bench.biom.gz' 2026-10-05T21:09:04,392 adding 'biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:04,396 adding 'biom/tests/bench_tables/100x1000x0.100_bench.biom.gz' 2026-10-05T21:09:04,403 adding 'biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,405 adding 'biom/tests/bench_tables/100x100x0.001_bench.biom.gz' 2026-10-05T21:09:04,408 adding 'biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:04,409 adding 'biom/tests/bench_tables/100x100x0.010_bench.biom.gz' 2026-10-05T21:09:04,412 adding 'biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:04,414 adding 'biom/tests/bench_tables/100x100x0.100_bench.biom.gz' 2026-10-05T21:09:04,416 adding 'biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,418 adding 'biom/tests/bench_tables/100x10x0.001_bench.biom.gz' 2026-10-05T21:09:04,420 adding 'biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:04,422 adding 'biom/tests/bench_tables/100x10x0.010_bench.biom.gz' 2026-10-05T21:09:04,424 adding 'biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:04,426 adding 'biom/tests/bench_tables/100x10x0.100_bench.biom.gz' 2026-10-05T21:09:04,428 adding 'biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,430 adding 'biom/tests/bench_tables/10x10000x0.001_bench.biom.gz' 2026-10-05T21:09:04,479 adding 'biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:04,483 adding 'biom/tests/bench_tables/10x10000x0.010_bench.biom.gz' 2026-10-05T21:09:04,531 adding 'biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:04,537 adding 'biom/tests/bench_tables/10x10000x0.100_bench.biom.gz' 2026-10-05T21:09:04,587 adding 'biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,590 adding 'biom/tests/bench_tables/10x1000x0.001_bench.biom.gz' 2026-10-05T21:09:04,596 adding 'biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:04,598 adding 'biom/tests/bench_tables/10x1000x0.010_bench.biom.gz' 2026-10-05T21:09:04,603 adding 'biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:04,605 adding 'biom/tests/bench_tables/10x1000x0.100_bench.biom.gz' 2026-10-05T21:09:04,611 adding 'biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,612 adding 'biom/tests/bench_tables/10x100x0.001_bench.biom.gz' 2026-10-05T21:09:04,615 adding 'biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:04,616 adding 'biom/tests/bench_tables/10x100x0.010_bench.biom.gz' 2026-10-05T21:09:04,619 adding 'biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:04,620 adding 'biom/tests/bench_tables/10x100x0.100_bench.biom.gz' 2026-10-05T21:09:04,622 adding 'biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,624 adding 'biom/tests/bench_tables/10x10x0.001_bench.biom.gz' 2026-10-05T21:09:04,626 adding 'biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz' 2026-10-05T21:09:04,627 adding 'biom/tests/bench_tables/10x10x0.010_bench.biom.gz' 2026-10-05T21:09:04,629 adding 'biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz' 2026-10-05T21:09:04,631 adding 'biom/tests/bench_tables/10x10x0.100_bench.biom.gz' 2026-10-05T21:09:04,633 adding 'biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz' 2026-10-05T21:09:04,635 adding 'biom/tests/test_cli/__init__.py' 2026-10-05T21:09:04,636 adding 'biom/tests/test_cli/test_add_metadata.py' 2026-10-05T21:09:04,637 adding 'biom/tests/test_cli/test_show_install_info.py' 2026-10-05T21:09:04,639 adding 'biom/tests/test_cli/test_subset_table.py' 2026-10-05T21:09:04,640 adding 'biom/tests/test_cli/test_summarize_table.py' 2026-10-05T21:09:04,642 adding 'biom/tests/test_cli/test_table_converter.py' 2026-10-05T21:09:04,643 adding 'biom/tests/test_cli/test_table_normalizer.py' 2026-10-05T21:09:04,645 adding 'biom/tests/test_cli/test_uc_processor.py' 2026-10-05T21:09:04,647 adding 'biom/tests/test_cli/test_validate_table.py' 2026-10-05T21:09:04,649 adding 'biom/tests/test_cli/test_data/json_obs_collapsed.biom' 2026-10-05T21:09:04,650 adding 'biom/tests/test_cli/test_data/json_sample_collapsed.biom' 2026-10-05T21:09:04,653 adding 'biom/tests/test_cli/test_data/test.biom' 2026-10-05T21:09:04,654 adding 'biom/tests/test_cli/test_data/test.json' 2026-10-05T21:09:04,656 adding 'biom/tests/test_data/__init__.py' 2026-10-05T21:09:04,657 adding 'biom/tests/test_data/bad_table.txt' 2026-10-05T21:09:04,658 adding 'biom/tests/test_data/bad_table.txt.gz' 2026-10-05T21:09:04,662 adding 'biom/tests/test_data/edgecase_issue_952.biom' 2026-10-05T21:09:04,664 adding 'biom/tests/test_data/empty.biom' 2026-10-05T21:09:04,665 adding 'biom/tests/test_data/no-contents.biom' 2026-10-05T21:09:04,668 adding 'biom/tests/test_data/test.biom' 2026-10-05T21:09:04,670 adding 'biom/tests/test_data/test.json' 2026-10-05T21:09:04,671 adding 'biom/tests/test_data/test.json.gz' 2026-10-05T21:09:04,673 adding 'biom/tests/test_data/test_grp_metadata.biom' 2026-10-05T21:09:04,676 adding 'biom_format-2.1.18.dist-info/licenses/COPYING.txt' 2026-10-05T21:09:04,678 adding 'doc/BIOM_LICENSE.rst' 2026-10-05T21:09:04,679 adding 'doc/Makefile' 2026-10-05T21:09:04,681 adding 'doc/conf.py' 2026-10-05T21:09:04,683 adding 'doc/index.rst' 2026-10-05T21:09:04,685 adding 'doc/_static/biom-format.png' 2026-10-05T21:09:04,686 adding 'doc/_static/copybutton.js' 2026-10-05T21:09:04,688 adding 'doc/_templates/layout.html' 2026-10-05T21:09:04,690 adding 'doc/_templates/autosummary/attribute.rst' 2026-10-05T21:09:04,691 adding 'doc/_templates/autosummary/class.rst' 2026-10-05T21:09:04,692 adding 'doc/_templates/autosummary/method.rst' 2026-10-05T21:09:04,695 adding 'doc/documentation/adding_metadata.rst' 2026-10-05T21:09:04,696 adding 'doc/documentation/biom_conversion.rst' 2026-10-05T21:09:04,698 adding 'doc/documentation/biom_format.rst' 2026-10-05T21:09:04,699 adding 'doc/documentation/index.rst' 2026-10-05T21:09:04,700 adding 'doc/documentation/quick_usage_examples.rst' 2026-10-05T21:09:04,701 adding 'doc/documentation/summarizing_biom_tables.rst' 2026-10-05T21:09:04,702 adding 'doc/documentation/table_objects.rst' 2026-10-05T21:09:04,704 adding 'doc/documentation/format_versions/biom-1.0.rst' 2026-10-05T21:09:04,706 adding 'doc/documentation/format_versions/biom-2.0.rst' 2026-10-05T21:09:04,708 adding 'doc/documentation/format_versions/biom-2.1.rst' 2026-10-05T21:09:04,711 adding 'doc/sphinxext/numpydoc/LICENSE.txt' 2026-10-05T21:09:04,712 adding 'doc/sphinxext/numpydoc/README.rst' 2026-10-05T21:09:04,713 adding 'doc/sphinxext/numpydoc/numpydoc/__init__.py' 2026-10-05T21:09:04,715 adding 'doc/sphinxext/numpydoc/numpydoc/comment_eater.py' 2026-10-05T21:09:04,717 adding 'doc/sphinxext/numpydoc/numpydoc/compiler_unparse.py' 2026-10-05T21:09:04,720 adding 'doc/sphinxext/numpydoc/numpydoc/docscrape.py' 2026-10-05T21:09:04,721 adding 'doc/sphinxext/numpydoc/numpydoc/docscrape_sphinx.py' 2026-10-05T21:09:04,723 adding 'doc/sphinxext/numpydoc/numpydoc/linkcode.py' 2026-10-05T21:09:04,724 adding 'doc/sphinxext/numpydoc/numpydoc/numpydoc.py' 2026-10-05T21:09:04,726 adding 'doc/sphinxext/numpydoc/numpydoc/phantom_import.py' 2026-10-05T21:09:04,728 adding 'doc/sphinxext/numpydoc/numpydoc/plot_directive.py' 2026-10-05T21:09:04,730 adding 'doc/sphinxext/numpydoc/numpydoc/traitsdoc.py' 2026-10-05T21:09:04,733 adding 'doc/sphinxext/numpydoc/numpydoc/tests/test_docscrape.py' 2026-10-05T21:09:04,734 adding 'doc/sphinxext/numpydoc/numpydoc/tests/test_linkcode.py' 2026-10-05T21:09:04,735 adding 'doc/sphinxext/numpydoc/numpydoc/tests/test_phantom_import.py' 2026-10-05T21:09:04,736 adding 'doc/sphinxext/numpydoc/numpydoc/tests/test_plot_directive.py' 2026-10-05T21:09:04,738 adding 'doc/sphinxext/numpydoc/numpydoc/tests/test_traitsdoc.py' 2026-10-05T21:09:04,739 adding 'examples/min_sparse_otu_table.biom' 2026-10-05T21:09:04,741 adding 'examples/min_sparse_otu_table_hdf5.biom' 2026-10-05T21:09:04,743 adding 'examples/obs_md.txt' 2026-10-05T21:09:04,744 adding 'examples/rich_sparse_otu_table.biom' 2026-10-05T21:09:04,747 adding 'examples/rich_sparse_otu_table_hdf5.biom' 2026-10-05T21:09:04,749 adding 'examples/rich_sparse_otu_table_hdf5_group_metadata.biom' 2026-10-05T21:09:04,750 adding 'examples/sam_md.txt' 2026-10-05T21:09:04,752 adding 'licenses/numpydoc.txt' 2026-10-05T21:09:04,753 adding 'licenses/scikit-learn.txt' 2026-10-05T21:09:04,754 adding 'licenses/scipy.txt' 2026-10-05T21:09:04,756 adding 'biom_format-2.1.18.dist-info/METADATA' 2026-10-05T21:09:04,757 adding 'biom_format-2.1.18.dist-info/WHEEL' 2026-10-05T21:09:04,758 adding 'biom_format-2.1.18.dist-info/entry_points.txt' 2026-10-05T21:09:04,759 adding 'biom_format-2.1.18.dist-info/top_level.txt' 2026-10-05T21:09:04,762 adding 'biom_format-2.1.18.dist-info/RECORD' 2026-10-05T21:09:04,892 removing build/bdist.linux-armv7l/wheel 2026-10-05T21:09:05,513 Building wheel for biom-format (pyproject.toml): finished with status 'done' 2026-10-05T21:09:05,767 Created wheel for biom-format: filename=biom_format-2.1.18-cp311-cp311-linux_armv7l.whl size=12250485 sha256=00f83f46d4058e5384a9609803df7a8a79315389bdcb8e6be9c6a843a4553bf4 2026-10-05T21:09:05,768 Stored in directory: /tmp/pip-ephem-wheel-cache-h3li9vqo/wheels/d4/c1/ff/bc286aac459374cb65428d2107d1f445351cc6c9e94116d0dd 2026-10-05T21:09:05,790 Successfully built biom-format 2026-10-05T21:09:06,073 Removed build tracker: '/tmp/pip-build-tracker-0_fv22gs'