2026-10-08T00:07:59,634 Created temporary directory: /tmp/pip-ephem-wheel-cache-zrxkaoae
2026-10-08T00:07:59,636 Created temporary directory: /tmp/pip-build-tracker-nzzi9x71
2026-10-08T00:07:59,637 Initialized build tracking at /tmp/pip-build-tracker-nzzi9x71
2026-10-08T00:07:59,637 Created build tracker: /tmp/pip-build-tracker-nzzi9x71
2026-10-08T00:07:59,638 Entered build tracker: /tmp/pip-build-tracker-nzzi9x71
2026-10-08T00:07:59,638 Created temporary directory: /tmp/pip-wheel-jbq7_xaf
2026-10-08T00:07:59,642 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-10-08T00:07:59,644 Created temporary directory: /tmp/pip-ephem-wheel-cache-6m2br7qq
2026-10-08T00:07:59,665 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-10-08T00:07:59,669 2 location(s) to search for versions of py-semtools:
2026-10-08T00:07:59,669 * https://pypi.org/simple/py-semtools/
2026-10-08T00:07:59,669 * https://www.piwheels.org/simple/py-semtools/
2026-10-08T00:07:59,670 Fetching project page and analyzing links: https://pypi.org/simple/py-semtools/
2026-10-08T00:07:59,671 Getting page https://pypi.org/simple/py-semtools/
2026-10-08T00:07:59,672 Found index url https://pypi.org/simple
2026-10-08T00:07:59,827 Fetched page https://pypi.org/simple/py-semtools/ as application/vnd.pypi.simple.v1+json
2026-10-08T00:07:59,831   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/9e/91/d3dcbccb20de4901a7c17a89e484805f6eb931fd94997ee4a6371274ad54/py_semtools-1.0.0-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-08T00:07:59,832   Found link https://files.pythonhosted.org/packages/92/99/7c7b949ff077f199d9860c6e18208898730c91a5ed4067648d59803660c9/py_semtools-1.0.0.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.0.0
2026-10-08T00:07:59,833   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/03/91/07795e2c37bf072331b1929b1e5d9f3efda5c6ad9b681646a57db3d877c3/py_semtools-1.0.1-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-08T00:07:59,833   Found link https://files.pythonhosted.org/packages/20/5a/cd42c5bce40fe864eee951abea020789308e4c918cf468e8be8b9efdfb9b/py_semtools-1.0.1.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.0.1
2026-10-08T00:07:59,834   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/ae/8a/5ba9e4b8670a8d925f8ee52ccf997f87c53d2d6a69b27c4ad76392ac17c1/py_semtools-1.2.1-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-08T00:07:59,835   Found link https://files.pythonhosted.org/packages/b4/84/87d081d03ef3e4a62528ae0926e2a34f8ca7cd10e1f578d5c4bf49e6ee45/py_semtools-1.2.1.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.2.1
2026-10-08T00:07:59,835   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/95/60/c813d5bd83c47fb4626f08d560fe56a7d1dd814494cfddf8c3e5ed0a0fe0/py_semtools-1.3-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-08T00:07:59,836   Found link https://files.pythonhosted.org/packages/11/4a/e1302ebdac699b7160f04425568ab11f0a54d87f4eaf0ccc09eb5c62f571/py_semtools-1.3.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.3
2026-10-08T00:07:59,836   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/66/ea/bb985794a40893bb870945504ca73f1713d9b559d2eb795430f39dea83eb/py_semtools-1.3.1-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-08T00:07:59,837   Found link https://files.pythonhosted.org/packages/fc/b7/2e452149be5ed3c3dfbf578ce73ffa29e020138e3210c7775118faeb2b93/py_semtools-1.3.1.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.3.1
2026-10-08T00:07:59,838   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/58/bf/4cc937fd9dfddc9525c630141e363598786d4779a3286c4de85eafacb9c4/py_semtools-1.3.3-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-08T00:07:59,838   Found link https://files.pythonhosted.org/packages/9d/4c/1df834b33b925754a6279ea007cb75054df4c3e580e1895d08de721f802e/py_semtools-1.3.3.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.3.3
2026-10-08T00:07:59,839   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/1d/00/f534f6116463d4fb19a815fef72c49b4fd888ea0bfd5b3eae69016c96b05/py_semtools-1.3.4-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-08T00:07:59,839   Found link https://files.pythonhosted.org/packages/b3/52/648d03ac102aa1380fd683a2f981caf377a905384076836908310ce9df45/py_semtools-1.3.4.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.3.4
2026-10-08T00:07:59,840 Fetching project page and analyzing links: https://www.piwheels.org/simple/py-semtools/
2026-10-08T00:07:59,841 Getting page https://www.piwheels.org/simple/py-semtools/
2026-10-08T00:07:59,842 Found index url https://www.piwheels.org/simple
2026-10-08T00:08:00,051 Fetched page https://www.piwheels.org/simple/py-semtools/ as text/html
2026-10-08T00:08:00,053   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.3.3-py3-none-any.whl#sha256=430e6fd3cbade125e6b7e9857d1d87786063dce2d4302b8785244a160b034b6e (from https://www.piwheels.org/simple/py-semtools/)
2026-10-08T00:08:00,054   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.3.1-py3-none-any.whl#sha256=c349189ed341192e50e37bc67ada76922201282b3cbf568a4b799c4b4c513629 (from https://www.piwheels.org/simple/py-semtools/)
2026-10-08T00:08:00,055   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.3-py3-none-any.whl#sha256=23f122980bf343c095689e7a3941bc0985138294de2ddfd688259690f1f69945 (from https://www.piwheels.org/simple/py-semtools/)
2026-10-08T00:08:00,055   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.2.1-py3-none-any.whl#sha256=213013f51320994c82556ab69f10781b631dac00db9ee0cbfa9089bc6545eb75 (from https://www.piwheels.org/simple/py-semtools/)
2026-10-08T00:08:00,056   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.0.1-py3-none-any.whl#sha256=b8d9c0404cf4d9ecff5ccd2a401fcd13b9a6d8c82e8bddb2a4d816d1b5a84b53 (from https://www.piwheels.org/simple/py-semtools/)
2026-10-08T00:08:00,056   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.0.0-py3-none-any.whl#sha256=ac317638b1ee685f80cf79ff3cf9fba3766e6b6cd754a6575d5bb634d446d14c (from https://www.piwheels.org/simple/py-semtools/)
2026-10-08T00:08:00,057 Skipping link: not a file: https://www.piwheels.org/simple/py-semtools/
2026-10-08T00:08:00,058 Skipping link: not a file: https://pypi.org/simple/py-semtools/
2026-10-08T00:08:00,077 Given no hashes to check 1 links for project 'py-semtools': discarding no candidates
2026-10-08T00:08:00,095 Collecting py-semtools==1.3.4
2026-10-08T00:08:00,098   Created temporary directory: /tmp/pip-unpack-ec05jyei
2026-10-08T00:08:00,352   Downloading py_semtools-1.3.4.tar.gz (7.9 MB)
2026-10-08T00:08:02,875   Added py-semtools==1.3.4 from https://files.pythonhosted.org/packages/b3/52/648d03ac102aa1380fd683a2f981caf377a905384076836908310ce9df45/py_semtools-1.3.4.tar.gz to build tracker '/tmp/pip-build-tracker-nzzi9x71'
2026-10-08T00:08:02,880   Created temporary directory: /tmp/pip-build-env-xak6m2_r
2026-10-08T00:08:02,884   Installing build dependencies: started
2026-10-08T00:08:02,886   Running command pip subprocess to install build dependencies
2026-10-08T00:08:04,016   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-10-08T00:08:04,436   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-10-08T00:08:04,461   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-10-08T00:08:06,323   Collecting setuptools>=46.1.0
2026-10-08T00:08:06,324     Obtaining dependency information for setuptools>=46.1.0 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata
2026-10-08T00:08:06,338     Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB)
2026-10-08T00:08:06,717   Collecting setuptools_scm[toml]>=5
2026-10-08T00:08:06,718     Obtaining dependency information for setuptools_scm[toml]>=5 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.3.4-py3-none-any.whl.metadata
2026-10-08T00:08:06,732     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.3.4-py3-none-any.whl.metadata (6.7 kB)
2026-10-08T00:08:06,742   Discarding https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.3.4-py3-none-any.whl#sha256=4f1e03228b00ea3e4d086f76213b86b07ae918f991657213a190610a02dee076 (from https://www.piwheels.org/simple/setuptools-scm/) (requires-python:>=3.8): Requested setuptools_scm>=5 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.3.4-py3-none-any.whl#sha256=4f1e03228b00ea3e4d086f76213b86b07ae918f991657213a190610a02dee076 has inconsistent Name: expected 'setuptools_scm', but metadata has 'setuptools-scm'
2026-10-08T00:08:06,765     Using cached setuptools_scm-10.3.4-py3-none-any.whl (33 kB)
2026-10-08T00:08:06,891   Collecting vcs-versioning<3,>=2.5.0.dev0
2026-10-08T00:08:06,892     Obtaining dependency information for vcs-versioning<3,>=2.5.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.6.0-py3-none-any.whl.metadata
2026-10-08T00:08:06,906     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.6.0-py3-none-any.whl.metadata (1.7 kB)
2026-10-08T00:08:07,095   Collecting packaging>=20
2026-10-08T00:08:07,096     Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata
2026-10-08T00:08:07,108     Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB)
2026-10-08T00:08:07,360   Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB)
2026-10-08T00:08:07,386   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.6.0-py3-none-any.whl (123 kB)
2026-10-08T00:08:07,464   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB)
2026-10-08T00:08:07,499   Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB)
2026-10-08T00:08:07,527   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.6.0-py3-none-any.whl (123 kB)
2026-10-08T00:08:07,621   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB)
2026-10-08T00:08:10,419   Installing collected packages: setuptools, packaging, vcs-versioning, setuptools_scm
2026-10-08T00:08:13,405     Creating /tmp/pip-build-env-xak6m2_r/overlay/local/bin
2026-10-08T00:08:13,407     changing mode of /tmp/pip-build-env-xak6m2_r/overlay/local/bin/vcs-versioning to 755
2026-10-08T00:08:13,549     changing mode of /tmp/pip-build-env-xak6m2_r/overlay/local/bin/setuptools-scm to 755
2026-10-08T00:08:13,577   Successfully installed packaging-26.3 setuptools-84.0.0 setuptools_scm-10.3.4 vcs-versioning-2.6.0
2026-10-08T00:08:13,873   Installing build dependencies: finished with status 'done'
2026-10-08T00:08:13,879   Getting requirements to build wheel: started
2026-10-08T00:08:13,881   Running command Getting requirements to build wheel
2026-10-08T00:08:14,626   /tmp/pip-build-env-xak6m2_r/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/version_inference.py:236: UserWarning: version of py_semtools already set
2026-10-08T00:08:14,626     warnings.warn(f"version of {self.dist_name} already set")
2026-10-08T00:08:14,637   running egg_info
2026-10-08T00:08:14,657   writing src/py_semtools.egg-info/PKG-INFO
2026-10-08T00:08:14,662   writing dependency_links to src/py_semtools.egg-info/dependency_links.txt
2026-10-08T00:08:14,664   writing entry points to src/py_semtools.egg-info/entry_points.txt
2026-10-08T00:08:14,667   writing requirements to src/py_semtools.egg-info/requires.txt
2026-10-08T00:08:14,668   writing top-level names to src/py_semtools.egg-info/top_level.txt
2026-10-08T00:08:14,707   reading manifest file 'src/py_semtools.egg-info/SOURCES.txt'
2026-10-08T00:08:14,731   reading manifest template 'MANIFEST.in'
2026-10-08T00:08:14,732   warning: no files found matching 'py_semtools/external_data/ontologies.txt'
2026-10-08T00:08:14,732   adding license file 'LICENSE.txt'
2026-10-08T00:08:14,740   writing manifest file 'src/py_semtools.egg-info/SOURCES.txt'
2026-10-08T00:08:14,842   Getting requirements to build wheel: finished with status 'done'
2026-10-08T00:08:14,845   Created temporary directory: /tmp/pip-modern-metadata-1gt3wc1u
2026-10-08T00:08:14,848   Preparing metadata (pyproject.toml): started
2026-10-08T00:08:14,849   Running command Preparing metadata (pyproject.toml)
2026-10-08T00:08:15,547   /tmp/pip-build-env-xak6m2_r/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/version_inference.py:236: UserWarning: version of py_semtools already set
2026-10-08T00:08:15,547     warnings.warn(f"version of {self.dist_name} already set")
2026-10-08T00:08:15,569   running dist_info
2026-10-08T00:08:15,571   creating /tmp/pip-modern-metadata-1gt3wc1u/py_semtools.egg-info
2026-10-08T00:08:15,590   writing /tmp/pip-modern-metadata-1gt3wc1u/py_semtools.egg-info/PKG-INFO
2026-10-08T00:08:15,595   writing dependency_links to /tmp/pip-modern-metadata-1gt3wc1u/py_semtools.egg-info/dependency_links.txt
2026-10-08T00:08:15,597   writing entry points to /tmp/pip-modern-metadata-1gt3wc1u/py_semtools.egg-info/entry_points.txt
2026-10-08T00:08:15,600   writing requirements to /tmp/pip-modern-metadata-1gt3wc1u/py_semtools.egg-info/requires.txt
2026-10-08T00:08:15,601   writing top-level names to /tmp/pip-modern-metadata-1gt3wc1u/py_semtools.egg-info/top_level.txt
2026-10-08T00:08:15,603   writing manifest file '/tmp/pip-modern-metadata-1gt3wc1u/py_semtools.egg-info/SOURCES.txt'
2026-10-08T00:08:15,640   reading manifest file '/tmp/pip-modern-metadata-1gt3wc1u/py_semtools.egg-info/SOURCES.txt'
2026-10-08T00:08:15,642   reading manifest template 'MANIFEST.in'
2026-10-08T00:08:15,643   warning: no files found matching 'py_semtools/external_data/ontologies.txt'
2026-10-08T00:08:15,643   adding license file 'LICENSE.txt'
2026-10-08T00:08:15,647   writing manifest file '/tmp/pip-modern-metadata-1gt3wc1u/py_semtools.egg-info/SOURCES.txt'
2026-10-08T00:08:15,648   creating '/tmp/pip-modern-metadata-1gt3wc1u/py_semtools-1.3.4.dist-info'
2026-10-08T00:08:15,779   Preparing metadata (pyproject.toml): finished with status 'done'
2026-10-08T00:08:15,784   Source in /tmp/pip-wheel-jbq7_xaf/py-semtools_e4bf2835050645c398270b9865508a21 has version 1.3.4, which satisfies requirement py-semtools==1.3.4 from https://files.pythonhosted.org/packages/b3/52/648d03ac102aa1380fd683a2f981caf377a905384076836908310ce9df45/py_semtools-1.3.4.tar.gz
2026-10-08T00:08:15,785   Removed py-semtools==1.3.4 from https://files.pythonhosted.org/packages/b3/52/648d03ac102aa1380fd683a2f981caf377a905384076836908310ce9df45/py_semtools-1.3.4.tar.gz from build tracker '/tmp/pip-build-tracker-nzzi9x71'
2026-10-08T00:08:15,789 Created temporary directory: /tmp/pip-unpack-ovs9v02o
2026-10-08T00:08:15,790 Building wheels for collected packages: py-semtools
2026-10-08T00:08:15,794   Created temporary directory: /tmp/pip-wheel-74zq92lj
2026-10-08T00:08:15,794   Destination directory: /tmp/pip-wheel-74zq92lj
2026-10-08T00:08:15,796   Building wheel for py-semtools (pyproject.toml): started
2026-10-08T00:08:15,797   Running command Building wheel for py-semtools (pyproject.toml)
2026-10-08T00:08:16,462   /tmp/pip-build-env-xak6m2_r/overlay/local/lib/python3.11/dist-packages/setuptools_scm/_integration/version_inference.py:236: UserWarning: version of py_semtools already set
2026-10-08T00:08:16,462     warnings.warn(f"version of {self.dist_name} already set")
2026-10-08T00:08:16,476   running bdist_wheel
2026-10-08T00:08:16,511   running build
2026-10-08T00:08:16,511   running build_py
2026-10-08T00:08:16,514   creating build/lib/py_semtools
2026-10-08T00:08:16,515   copying src/py_semtools/parallelizer.py -> build/lib/py_semtools
2026-10-08T00:08:16,518   copying src/py_semtools/cli_manager.py -> build/lib/py_semtools
2026-10-08T00:08:16,521   copying src/py_semtools/__init__.py -> build/lib/py_semtools
2026-10-08T00:08:16,523   copying src/py_semtools/report_ont.py -> build/lib/py_semtools
2026-10-08T00:08:16,525   copying src/py_semtools/main_modules.py -> build/lib/py_semtools
2026-10-08T00:08:16,529   copying src/py_semtools/ontology.py -> build/lib/py_semtools
2026-10-08T00:08:16,533   copying src/py_semtools/sim_handler.py -> build/lib/py_semtools
2026-10-08T00:08:16,536   creating build/lib/py_semtools/lexical_engines
2026-10-08T00:08:16,537   copying src/py_semtools/lexical_engines/stEngine.py -> build/lib/py_semtools/lexical_engines
2026-10-08T00:08:16,539   copying src/py_semtools/lexical_engines/fmEngine.py -> build/lib/py_semtools/lexical_engines
2026-10-08T00:08:16,542   copying src/py_semtools/lexical_engines/llmEngine.py -> build/lib/py_semtools/lexical_engines
2026-10-08T00:08:16,544   copying src/py_semtools/lexical_engines/engine_baseclass.py -> build/lib/py_semtools/lexical_engines
2026-10-08T00:08:16,547   creating build/lib/py_semtools/indexers
2026-10-08T00:08:16,548   copying src/py_semtools/indexers/text_indexer.py -> build/lib/py_semtools/indexers
2026-10-08T00:08:16,552   creating build/lib/py_semtools/parsers/ont
2026-10-08T00:08:16,553   copying src/py_semtools/parsers/ont/json_parser.py -> build/lib/py_semtools/parsers/ont
2026-10-08T00:08:16,555   copying src/py_semtools/parsers/ont/file_parser.py -> build/lib/py_semtools/parsers/ont
2026-10-08T00:08:16,557   copying src/py_semtools/parsers/ont/oboparser.py -> build/lib/py_semtools/parsers/ont
2026-10-08T00:08:16,560   creating build/lib/py_semtools/parsers/text
2026-10-08T00:08:16,561   copying src/py_semtools/parsers/text/text_pubmed_parser.py -> build/lib/py_semtools/parsers/text
2026-10-08T00:08:16,563   copying src/py_semtools/parsers/text/text_basic_parser.py -> build/lib/py_semtools/parsers/text
2026-10-08T00:08:16,565   copying src/py_semtools/parsers/text/text_pubmed_paper_parser.py -> build/lib/py_semtools/parsers/text
2026-10-08T00:08:16,567   copying src/py_semtools/parsers/text/text_pubmed_abstract_parser.py -> build/lib/py_semtools/parsers/text
2026-10-08T00:08:16,569   running egg_info
2026-10-08T00:08:16,587   writing src/py_semtools.egg-info/PKG-INFO
2026-10-08T00:08:16,592   writing dependency_links to src/py_semtools.egg-info/dependency_links.txt
2026-10-08T00:08:16,594   writing entry points to src/py_semtools.egg-info/entry_points.txt
2026-10-08T00:08:16,596   writing requirements to src/py_semtools.egg-info/requires.txt
2026-10-08T00:08:16,597   writing top-level names to src/py_semtools.egg-info/top_level.txt
2026-10-08T00:08:16,624   reading manifest file 'src/py_semtools.egg-info/SOURCES.txt'
2026-10-08T00:08:16,634   reading manifest template 'MANIFEST.in'
2026-10-08T00:08:16,635   warning: no files found matching 'py_semtools/external_data/ontologies.txt'
2026-10-08T00:08:16,636   adding license file 'LICENSE.txt'
2026-10-08T00:08:16,644   writing manifest file 'src/py_semtools.egg-info/SOURCES.txt'
2026-10-08T00:08:16,655   creating build/lib/py_semtools/external_data
2026-10-08T00:08:16,656   copying src/py_semtools/external_data/ontologies.txt -> build/lib/py_semtools/external_data
2026-10-08T00:08:16,658   creating build/lib/py_semtools/templates
2026-10-08T00:08:16,659   copying src/py_semtools/templates/comorb_sugg.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,662   copying src/py_semtools/templates/makeTermFreqDist.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,664   copying src/py_semtools/templates/makeTermFreqTable.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,666   copying src/py_semtools/templates/ontoICdist.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,668   copying src/py_semtools/templates/ontodist.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,671   copying src/py_semtools/templates/ontoplot.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,673   copying src/py_semtools/templates/plotClust.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,676   copying src/py_semtools/templates/plotProfRed.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,678   copying src/py_semtools/templates/report.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,680   copying src/py_semtools/templates/similarity_heatmap.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,682   copying src/py_semtools/templates/similarity_matrix.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,684   copying src/py_semtools/templates/stEngine.txt -> build/lib/py_semtools/templates
2026-10-08T00:08:16,705   installing to build/bdist.linux-armv7l/wheel
2026-10-08T00:08:16,706   running install
2026-10-08T00:08:16,728   running install_lib
2026-10-08T00:08:16,738   creating build/bdist.linux-armv7l/wheel
2026-10-08T00:08:16,740   creating build/bdist.linux-armv7l/wheel/py_semtools
2026-10-08T00:08:16,741   copying build/lib/py_semtools/parallelizer.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-08T00:08:16,744   copying build/lib/py_semtools/cli_manager.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-08T00:08:16,747   copying build/lib/py_semtools/__init__.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-08T00:08:16,750   creating build/bdist.linux-armv7l/wheel/py_semtools/lexical_engines
2026-10-08T00:08:16,751   copying build/lib/py_semtools/lexical_engines/stEngine.py -> build/bdist.linux-armv7l/wheel/./py_semtools/lexical_engines
2026-10-08T00:08:16,754   copying build/lib/py_semtools/lexical_engines/fmEngine.py -> build/bdist.linux-armv7l/wheel/./py_semtools/lexical_engines
2026-10-08T00:08:16,756   copying build/lib/py_semtools/lexical_engines/llmEngine.py -> build/bdist.linux-armv7l/wheel/./py_semtools/lexical_engines
2026-10-08T00:08:16,758   copying build/lib/py_semtools/lexical_engines/engine_baseclass.py -> build/bdist.linux-armv7l/wheel/./py_semtools/lexical_engines
2026-10-08T00:08:16,760   copying build/lib/py_semtools/report_ont.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-08T00:08:16,763   copying build/lib/py_semtools/main_modules.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-08T00:08:16,766   copying build/lib/py_semtools/ontology.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-08T00:08:16,770   creating build/bdist.linux-armv7l/wheel/py_semtools/external_data
2026-10-08T00:08:16,772   copying build/lib/py_semtools/external_data/ontologies.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/external_data
2026-10-08T00:08:16,775   creating build/bdist.linux-armv7l/wheel/py_semtools/templates
2026-10-08T00:08:16,776   copying build/lib/py_semtools/templates/plotProfRed.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,778   copying build/lib/py_semtools/templates/report.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,780   copying build/lib/py_semtools/templates/similarity_matrix.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,782   copying build/lib/py_semtools/templates/ontodist.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,784   copying build/lib/py_semtools/templates/stEngine.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,786   copying build/lib/py_semtools/templates/makeTermFreqDist.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,788   copying build/lib/py_semtools/templates/comorb_sugg.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,790   copying build/lib/py_semtools/templates/ontoplot.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,793   copying build/lib/py_semtools/templates/plotClust.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,795   copying build/lib/py_semtools/templates/similarity_heatmap.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,797   copying build/lib/py_semtools/templates/makeTermFreqTable.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,799   copying build/lib/py_semtools/templates/ontoICdist.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-08T00:08:16,802   creating build/bdist.linux-armv7l/wheel/py_semtools/indexers
2026-10-08T00:08:16,803   copying build/lib/py_semtools/indexers/text_indexer.py -> build/bdist.linux-armv7l/wheel/./py_semtools/indexers
2026-10-08T00:08:16,806   creating build/bdist.linux-armv7l/wheel/py_semtools/parsers
2026-10-08T00:08:16,808   creating build/bdist.linux-armv7l/wheel/py_semtools/parsers/ont
2026-10-08T00:08:16,809   copying build/lib/py_semtools/parsers/ont/json_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/ont
2026-10-08T00:08:16,811   copying build/lib/py_semtools/parsers/ont/file_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/ont
2026-10-08T00:08:16,813   copying build/lib/py_semtools/parsers/ont/oboparser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/ont
2026-10-08T00:08:16,816   creating build/bdist.linux-armv7l/wheel/py_semtools/parsers/text
2026-10-08T00:08:16,817   copying build/lib/py_semtools/parsers/text/text_pubmed_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text
2026-10-08T00:08:16,820   copying build/lib/py_semtools/parsers/text/text_basic_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text
2026-10-08T00:08:16,822   copying build/lib/py_semtools/parsers/text/text_pubmed_paper_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text
2026-10-08T00:08:16,825   copying build/lib/py_semtools/parsers/text/text_pubmed_abstract_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text
2026-10-08T00:08:16,827   copying build/lib/py_semtools/sim_handler.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-08T00:08:16,829   running install_egg_info
2026-10-08T00:08:16,845   Copying src/py_semtools.egg-info to build/bdist.linux-armv7l/wheel/./py_semtools-1.3.4-py3.11.egg-info
2026-10-08T00:08:16,863   running install_scripts
2026-10-08T00:08:16,876   creating build/bdist.linux-armv7l/wheel/py_semtools-1.3.4.dist-info/WHEEL
2026-10-08T00:08:16,879   creating '/tmp/pip-wheel-74zq92lj/.tmp-1hov5sz0/py_semtools-1.3.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-10-08T00:08:16,881   adding 'py_semtools/__init__.py'
2026-10-08T00:08:16,886   adding 'py_semtools/cli_manager.py'
2026-10-08T00:08:16,893   adding 'py_semtools/main_modules.py'
2026-10-08T00:08:16,904   adding 'py_semtools/ontology.py'
2026-10-08T00:08:16,907   adding 'py_semtools/parallelizer.py'
2026-10-08T00:08:16,909   adding 'py_semtools/report_ont.py'
2026-10-08T00:08:16,911   adding 'py_semtools/sim_handler.py'
2026-10-08T00:08:16,913   adding 'py_semtools/external_data/ontologies.txt'
2026-10-08T00:08:16,916   adding 'py_semtools/indexers/text_indexer.py'
2026-10-08T00:08:16,919   adding 'py_semtools/lexical_engines/engine_baseclass.py'
2026-10-08T00:08:16,921   adding 'py_semtools/lexical_engines/fmEngine.py'
2026-10-08T00:08:16,922   adding 'py_semtools/lexical_engines/llmEngine.py'
2026-10-08T00:08:16,925   adding 'py_semtools/lexical_engines/stEngine.py'
2026-10-08T00:08:16,927   adding 'py_semtools/parsers/ont/file_parser.py'
2026-10-08T00:08:16,928   adding 'py_semtools/parsers/ont/json_parser.py'
2026-10-08T00:08:16,932   adding 'py_semtools/parsers/ont/oboparser.py'
2026-10-08T00:08:16,934   adding 'py_semtools/parsers/text/text_basic_parser.py'
2026-10-08T00:08:16,936   adding 'py_semtools/parsers/text/text_pubmed_abstract_parser.py'
2026-10-08T00:08:16,937   adding 'py_semtools/parsers/text/text_pubmed_paper_parser.py'
2026-10-08T00:08:16,938   adding 'py_semtools/parsers/text/text_pubmed_parser.py'
2026-10-08T00:08:16,941   adding 'py_semtools/templates/comorb_sugg.txt'
2026-10-08T00:08:16,942   adding 'py_semtools/templates/makeTermFreqDist.txt'
2026-10-08T00:08:16,943   adding 'py_semtools/templates/makeTermFreqTable.txt'
2026-10-08T00:08:16,944   adding 'py_semtools/templates/ontoICdist.txt'
2026-10-08T00:08:16,946   adding 'py_semtools/templates/ontodist.txt'
2026-10-08T00:08:16,947   adding 'py_semtools/templates/ontoplot.txt'
2026-10-08T00:08:16,949   adding 'py_semtools/templates/plotClust.txt'
2026-10-08T00:08:16,950   adding 'py_semtools/templates/plotProfRed.txt'
2026-10-08T00:08:16,951   adding 'py_semtools/templates/report.txt'
2026-10-08T00:08:16,952   adding 'py_semtools/templates/similarity_heatmap.txt'
2026-10-08T00:08:16,953   adding 'py_semtools/templates/similarity_matrix.txt'
2026-10-08T00:08:16,955   adding 'py_semtools/templates/stEngine.txt'
2026-10-08T00:08:16,958   adding 'py_semtools-1.3.4.dist-info/licenses/LICENSE.txt'
2026-10-08T00:08:16,959   adding 'py_semtools-1.3.4.dist-info/METADATA'
2026-10-08T00:08:16,960   adding 'py_semtools-1.3.4.dist-info/WHEEL'
2026-10-08T00:08:16,961   adding 'py_semtools-1.3.4.dist-info/entry_points.txt'
2026-10-08T00:08:16,962   adding 'py_semtools-1.3.4.dist-info/top_level.txt'
2026-10-08T00:08:16,964   adding 'py_semtools-1.3.4.dist-info/RECORD'
2026-10-08T00:08:16,966   removing build/bdist.linux-armv7l/wheel
2026-10-08T00:08:17,084   Building wheel for py-semtools (pyproject.toml): finished with status 'done'
2026-10-08T00:08:17,090   Created wheel for py-semtools: filename=py_semtools-1.3.4-py3-none-any.whl size=95963 sha256=14fb11587477c3aaef4bf3b43d821a29e24aa2d2db268c0f82f8810965fae9c6
2026-10-08T00:08:17,091   Stored in directory: /tmp/pip-ephem-wheel-cache-6m2br7qq/wheels/e6/b2/b6/bd6e6f3179abc4506aad022ea61baabe8fee866224885b4431
2026-10-08T00:08:17,103 Successfully built py-semtools
2026-10-08T00:08:17,108 Removed build tracker: '/tmp/pip-build-tracker-nzzi9x71'