2026-10-16T16:41:56,075 Created temporary directory: /tmp/pip-ephem-wheel-cache-icjuxa_m
2026-10-16T16:41:56,076 Created temporary directory: /tmp/pip-build-tracker-apdv7gwq
2026-10-16T16:41:56,077 Initialized build tracking at /tmp/pip-build-tracker-apdv7gwq
2026-10-16T16:41:56,077 Created build tracker: /tmp/pip-build-tracker-apdv7gwq
2026-10-16T16:41:56,078 Entered build tracker: /tmp/pip-build-tracker-apdv7gwq
2026-10-16T16:41:56,079 Created temporary directory: /tmp/pip-wheel-im266o6p
2026-10-16T16:41:56,082 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-10-16T16:41:56,084 Created temporary directory: /tmp/pip-ephem-wheel-cache-8rxd476r
2026-10-16T16:41:56,105 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-10-16T16:41:56,109 2 location(s) to search for versions of py-semtools:
2026-10-16T16:41:56,109 * https://pypi.org/simple/py-semtools/
2026-10-16T16:41:56,109 * https://www.piwheels.org/simple/py-semtools/
2026-10-16T16:41:56,110 Fetching project page and analyzing links: https://pypi.org/simple/py-semtools/
2026-10-16T16:41:56,111 Getting page https://pypi.org/simple/py-semtools/
2026-10-16T16:41:56,112 Found index url https://pypi.org/simple
2026-10-16T16:41:56,421 Fetched page https://pypi.org/simple/py-semtools/ as application/vnd.pypi.simple.v1+json
2026-10-16T16:41:56,427   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/9e/91/d3dcbccb20de4901a7c17a89e484805f6eb931fd94997ee4a6371274ad54/py_semtools-1.0.0-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-16T16:41:56,428   Found link https://files.pythonhosted.org/packages/92/99/7c7b949ff077f199d9860c6e18208898730c91a5ed4067648d59803660c9/py_semtools-1.0.0.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.0.0
2026-10-16T16:41:56,430   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/03/91/07795e2c37bf072331b1929b1e5d9f3efda5c6ad9b681646a57db3d877c3/py_semtools-1.0.1-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-16T16:41:56,431   Found link https://files.pythonhosted.org/packages/20/5a/cd42c5bce40fe864eee951abea020789308e4c918cf468e8be8b9efdfb9b/py_semtools-1.0.1.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.0.1
2026-10-16T16:41:56,433   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/ae/8a/5ba9e4b8670a8d925f8ee52ccf997f87c53d2d6a69b27c4ad76392ac17c1/py_semtools-1.2.1-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-16T16:41:56,434   Found link https://files.pythonhosted.org/packages/b4/84/87d081d03ef3e4a62528ae0926e2a34f8ca7cd10e1f578d5c4bf49e6ee45/py_semtools-1.2.1.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.2.1
2026-10-16T16:41:56,436   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/95/60/c813d5bd83c47fb4626f08d560fe56a7d1dd814494cfddf8c3e5ed0a0fe0/py_semtools-1.3-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-16T16:41:56,438   Found link https://files.pythonhosted.org/packages/11/4a/e1302ebdac699b7160f04425568ab11f0a54d87f4eaf0ccc09eb5c62f571/py_semtools-1.3.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.3
2026-10-16T16:41:56,439   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/66/ea/bb985794a40893bb870945504ca73f1713d9b559d2eb795430f39dea83eb/py_semtools-1.3.1-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-16T16:41:56,441   Found link https://files.pythonhosted.org/packages/fc/b7/2e452149be5ed3c3dfbf578ce73ffa29e020138e3210c7775118faeb2b93/py_semtools-1.3.1.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.3.1
2026-10-16T16:41:56,443   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/58/bf/4cc937fd9dfddc9525c630141e363598786d4779a3286c4de85eafacb9c4/py_semtools-1.3.3-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-16T16:41:56,446   Found link https://files.pythonhosted.org/packages/9d/4c/1df834b33b925754a6279ea007cb75054df4c3e580e1895d08de721f802e/py_semtools-1.3.3.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.3.3
2026-10-16T16:41:56,447   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/1d/00/f534f6116463d4fb19a815fef72c49b4fd888ea0bfd5b3eae69016c96b05/py_semtools-1.3.4-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-16T16:41:56,449   Found link https://files.pythonhosted.org/packages/b3/52/648d03ac102aa1380fd683a2f981caf377a905384076836908310ce9df45/py_semtools-1.3.4.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.3.4
2026-10-16T16:41:56,451   Skipping link: No binaries permitted for py-semtools: https://files.pythonhosted.org/packages/66/c4/e17ba443ec5a0691753febadb689e771cb483760b008aa5676d34f06d806/py_semtools-1.3.5-py3-none-any.whl (from https://pypi.org/simple/py-semtools/)
2026-10-16T16:41:56,453   Found link https://files.pythonhosted.org/packages/fa/e5/5d2b2dbbd7ac887f9bf7865252496865097f12071fe356e919c31d1f5aa6/py_semtools-1.3.5.tar.gz (from https://pypi.org/simple/py-semtools/), version: 1.3.5
2026-10-16T16:41:56,455 Fetching project page and analyzing links: https://www.piwheels.org/simple/py-semtools/
2026-10-16T16:41:56,456 Getting page https://www.piwheels.org/simple/py-semtools/
2026-10-16T16:41:56,459 Found index url https://www.piwheels.org/simple
2026-10-16T16:41:56,687 Fetched page https://www.piwheels.org/simple/py-semtools/ as text/html
2026-10-16T16:41:56,690   Skipping link: No binaries permitted for py-semtools: https://www.piwheels.org/simple/py-semtools/py_semtools-1.3.4-py3-none-any.whl#sha256=14fb11587477c3aaef4bf3b43d821a29e24aa2d2db268c0f82f8810965fae9c6 (from https://www.piwheels.org/simple/py-semtools/)
2026-10-16T16:41:56,691   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.3.3-py3-none-any.whl#sha256=430e6fd3cbade125e6b7e9857d1d87786063dce2d4302b8785244a160b034b6e (from https://www.piwheels.org/simple/py-semtools/)
2026-10-16T16:41:56,692   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.3.1-py3-none-any.whl#sha256=c349189ed341192e50e37bc67ada76922201282b3cbf568a4b799c4b4c513629 (from https://www.piwheels.org/simple/py-semtools/)
2026-10-16T16:41:56,692   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.3-py3-none-any.whl#sha256=23f122980bf343c095689e7a3941bc0985138294de2ddfd688259690f1f69945 (from https://www.piwheels.org/simple/py-semtools/)
2026-10-16T16:41:56,693   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.2.1-py3-none-any.whl#sha256=213013f51320994c82556ab69f10781b631dac00db9ee0cbfa9089bc6545eb75 (from https://www.piwheels.org/simple/py-semtools/)
2026-10-16T16:41:56,694   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.0.1-py3-none-any.whl#sha256=b8d9c0404cf4d9ecff5ccd2a401fcd13b9a6d8c82e8bddb2a4d816d1b5a84b53 (from https://www.piwheels.org/simple/py-semtools/)
2026-10-16T16:41:56,695   Skipping link: No binaries permitted for py-semtools: https://archive1.piwheels.org/simple/py-semtools/py_semtools-1.0.0-py3-none-any.whl#sha256=ac317638b1ee685f80cf79ff3cf9fba3766e6b6cd754a6575d5bb634d446d14c (from https://www.piwheels.org/simple/py-semtools/)
2026-10-16T16:41:56,696 Skipping link: not a file: https://www.piwheels.org/simple/py-semtools/
2026-10-16T16:41:56,697 Skipping link: not a file: https://pypi.org/simple/py-semtools/
2026-10-16T16:41:56,717 Given no hashes to check 1 links for project 'py-semtools': discarding no candidates
2026-10-16T16:41:56,735 Collecting py-semtools==1.3.5
2026-10-16T16:41:56,737   Created temporary directory: /tmp/pip-unpack-4pohtb24
2026-10-16T16:41:56,979   Downloading py_semtools-1.3.5.tar.gz (7.9 MB)
2026-10-16T16:41:59,587   Added py-semtools==1.3.5 from https://files.pythonhosted.org/packages/fa/e5/5d2b2dbbd7ac887f9bf7865252496865097f12071fe356e919c31d1f5aa6/py_semtools-1.3.5.tar.gz to build tracker '/tmp/pip-build-tracker-apdv7gwq'
2026-10-16T16:41:59,591   Created temporary directory: /tmp/pip-build-env-xxh06x7c
2026-10-16T16:41:59,596   Installing build dependencies: started
2026-10-16T16:41:59,597   Running command pip subprocess to install build dependencies
2026-10-16T16:42:00,738   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-10-16T16:42:01,174   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-10-16T16:42:01,197   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-10-16T16:42:03,045   Collecting setuptools>=46.1.0
2026-10-16T16:42:03,045     Obtaining dependency information for setuptools>=46.1.0 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata
2026-10-16T16:42:03,060     Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB)
2026-10-16T16:42:03,437   Collecting setuptools_scm[toml]>=5
2026-10-16T16:42:03,438     Obtaining dependency information for setuptools_scm[toml]>=5 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.3.4-py3-none-any.whl.metadata
2026-10-16T16:42:03,453     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.3.4-py3-none-any.whl.metadata (6.7 kB)
2026-10-16T16:42:03,463   Discarding https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.3.4-py3-none-any.whl#sha256=4f1e03228b00ea3e4d086f76213b86b07ae918f991657213a190610a02dee076 (from https://www.piwheels.org/simple/setuptools-scm/) (requires-python:>=3.8): Requested setuptools_scm>=5 from https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.3.4-py3-none-any.whl#sha256=4f1e03228b00ea3e4d086f76213b86b07ae918f991657213a190610a02dee076 has inconsistent Name: expected 'setuptools_scm', but metadata has 'setuptools-scm'
2026-10-16T16:42:03,486     Using cached setuptools_scm-10.3.4-py3-none-any.whl (33 kB)
2026-10-16T16:42:03,611   Collecting vcs-versioning<3,>=2.5.0.dev0
2026-10-16T16:42:03,612     Obtaining dependency information for vcs-versioning<3,>=2.5.0.dev0 from https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.6.0-py3-none-any.whl.metadata
2026-10-16T16:42:03,628     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.6.0-py3-none-any.whl.metadata (1.7 kB)
2026-10-16T16:42:03,817   Collecting packaging>=20
2026-10-16T16:42:03,818     Obtaining dependency information for packaging>=20 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata
2026-10-16T16:42:03,831     Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB)
2026-10-16T16:42:04,080   Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB)
2026-10-16T16:42:04,362   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.6.0-py3-none-any.whl (123 kB)
2026-10-16T16:42:04,448   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB)
2026-10-16T16:42:04,488   Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB)
2026-10-16T16:42:04,516   Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-2.6.0-py3-none-any.whl (123 kB)
2026-10-16T16:42:04,592   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB)
2026-10-16T16:42:07,414   Installing collected packages: setuptools, packaging, vcs-versioning, setuptools_scm
2026-10-16T16:42:10,952     Creating /tmp/pip-build-env-xxh06x7c/overlay/local/bin
2026-10-16T16:42:10,954     changing mode of /tmp/pip-build-env-xxh06x7c/overlay/local/bin/vcs-versioning to 755
2026-10-16T16:42:11,106     changing mode of /tmp/pip-build-env-xxh06x7c/overlay/local/bin/setuptools-scm to 755
2026-10-16T16:42:11,134   Successfully installed packaging-26.3 setuptools-84.0.0 setuptools_scm-10.3.4 vcs-versioning-2.6.0
2026-10-16T16:42:11,428   Installing build dependencies: finished with status 'done'
2026-10-16T16:42:11,434   Getting requirements to build wheel: started
2026-10-16T16:42:11,435   Running command Getting requirements to build wheel
2026-10-16T16:42:12,198   running egg_info
2026-10-16T16:42:12,219   writing src/py_semtools.egg-info/PKG-INFO
2026-10-16T16:42:12,224   writing dependency_links to src/py_semtools.egg-info/dependency_links.txt
2026-10-16T16:42:12,226   writing entry points to src/py_semtools.egg-info/entry_points.txt
2026-10-16T16:42:12,229   writing requirements to src/py_semtools.egg-info/requires.txt
2026-10-16T16:42:12,230   writing top-level names to src/py_semtools.egg-info/top_level.txt
2026-10-16T16:42:12,270   reading manifest file 'src/py_semtools.egg-info/SOURCES.txt'
2026-10-16T16:42:12,293   reading manifest template 'MANIFEST.in'
2026-10-16T16:42:12,294   warning: no files found matching 'py_semtools/external_data/ontologies.txt'
2026-10-16T16:42:12,294   adding license file 'LICENSE.txt'
2026-10-16T16:42:12,302   writing manifest file 'src/py_semtools.egg-info/SOURCES.txt'
2026-10-16T16:42:12,404   Getting requirements to build wheel: finished with status 'done'
2026-10-16T16:42:12,407   Created temporary directory: /tmp/pip-modern-metadata-2yrel7jn
2026-10-16T16:42:12,409   Preparing metadata (pyproject.toml): started
2026-10-16T16:42:12,411   Running command Preparing metadata (pyproject.toml)
2026-10-16T16:42:13,126   running dist_info
2026-10-16T16:42:13,128   creating /tmp/pip-modern-metadata-2yrel7jn/py_semtools.egg-info
2026-10-16T16:42:13,145   writing /tmp/pip-modern-metadata-2yrel7jn/py_semtools.egg-info/PKG-INFO
2026-10-16T16:42:13,151   writing dependency_links to /tmp/pip-modern-metadata-2yrel7jn/py_semtools.egg-info/dependency_links.txt
2026-10-16T16:42:13,153   writing entry points to /tmp/pip-modern-metadata-2yrel7jn/py_semtools.egg-info/entry_points.txt
2026-10-16T16:42:13,156   writing requirements to /tmp/pip-modern-metadata-2yrel7jn/py_semtools.egg-info/requires.txt
2026-10-16T16:42:13,157   writing top-level names to /tmp/pip-modern-metadata-2yrel7jn/py_semtools.egg-info/top_level.txt
2026-10-16T16:42:13,158   writing manifest file '/tmp/pip-modern-metadata-2yrel7jn/py_semtools.egg-info/SOURCES.txt'
2026-10-16T16:42:13,194   reading manifest file '/tmp/pip-modern-metadata-2yrel7jn/py_semtools.egg-info/SOURCES.txt'
2026-10-16T16:42:13,196   reading manifest template 'MANIFEST.in'
2026-10-16T16:42:13,197   warning: no files found matching 'py_semtools/external_data/ontologies.txt'
2026-10-16T16:42:13,197   adding license file 'LICENSE.txt'
2026-10-16T16:42:13,201   writing manifest file '/tmp/pip-modern-metadata-2yrel7jn/py_semtools.egg-info/SOURCES.txt'
2026-10-16T16:42:13,202   creating '/tmp/pip-modern-metadata-2yrel7jn/py_semtools-1.3.5.dist-info'
2026-10-16T16:42:13,333   Preparing metadata (pyproject.toml): finished with status 'done'
2026-10-16T16:42:13,338   Source in /tmp/pip-wheel-im266o6p/py-semtools_96c629c8473241b9a488128d56b9092c has version 1.3.5, which satisfies requirement py-semtools==1.3.5 from https://files.pythonhosted.org/packages/fa/e5/5d2b2dbbd7ac887f9bf7865252496865097f12071fe356e919c31d1f5aa6/py_semtools-1.3.5.tar.gz
2026-10-16T16:42:13,339   Removed py-semtools==1.3.5 from https://files.pythonhosted.org/packages/fa/e5/5d2b2dbbd7ac887f9bf7865252496865097f12071fe356e919c31d1f5aa6/py_semtools-1.3.5.tar.gz from build tracker '/tmp/pip-build-tracker-apdv7gwq'
2026-10-16T16:42:13,343 Created temporary directory: /tmp/pip-unpack-5ptei4q7
2026-10-16T16:42:13,344 Building wheels for collected packages: py-semtools
2026-10-16T16:42:13,348   Created temporary directory: /tmp/pip-wheel-jl_0ln61
2026-10-16T16:42:13,349   Destination directory: /tmp/pip-wheel-jl_0ln61
2026-10-16T16:42:13,351   Building wheel for py-semtools (pyproject.toml): started
2026-10-16T16:42:13,352   Running command Building wheel for py-semtools (pyproject.toml)
2026-10-16T16:42:14,035   running bdist_wheel
2026-10-16T16:42:14,069   running build
2026-10-16T16:42:14,070   running build_py
2026-10-16T16:42:14,072   creating build/lib/py_semtools
2026-10-16T16:42:14,074   copying src/py_semtools/report_ont.py -> build/lib/py_semtools
2026-10-16T16:42:14,077   copying src/py_semtools/parallelizer.py -> build/lib/py_semtools
2026-10-16T16:42:14,079   copying src/py_semtools/__init__.py -> build/lib/py_semtools
2026-10-16T16:42:14,081   copying src/py_semtools/sim_handler.py -> build/lib/py_semtools
2026-10-16T16:42:14,083   copying src/py_semtools/main_modules.py -> build/lib/py_semtools
2026-10-16T16:42:14,086   copying src/py_semtools/ontology.py -> build/lib/py_semtools
2026-10-16T16:42:14,090   copying src/py_semtools/cli_manager.py -> build/lib/py_semtools
2026-10-16T16:42:14,094   creating build/lib/py_semtools/indexers
2026-10-16T16:42:14,095   copying src/py_semtools/indexers/text_indexer.py -> build/lib/py_semtools/indexers
2026-10-16T16:42:14,098   creating build/lib/py_semtools/lexical_engines
2026-10-16T16:42:14,099   copying src/py_semtools/lexical_engines/stEngine.py -> build/lib/py_semtools/lexical_engines
2026-10-16T16:42:14,102   copying src/py_semtools/lexical_engines/engine_baseclass.py -> build/lib/py_semtools/lexical_engines
2026-10-16T16:42:14,104   copying src/py_semtools/lexical_engines/fmEngine.py -> build/lib/py_semtools/lexical_engines
2026-10-16T16:42:14,107   copying src/py_semtools/lexical_engines/llmEngine.py -> build/lib/py_semtools/lexical_engines
2026-10-16T16:42:14,110   creating build/lib/py_semtools/parsers/ont
2026-10-16T16:42:14,111   copying src/py_semtools/parsers/ont/json_parser.py -> build/lib/py_semtools/parsers/ont
2026-10-16T16:42:14,113   copying src/py_semtools/parsers/ont/file_parser.py -> build/lib/py_semtools/parsers/ont
2026-10-16T16:42:14,115   copying src/py_semtools/parsers/ont/oboparser.py -> build/lib/py_semtools/parsers/ont
2026-10-16T16:42:14,118   creating build/lib/py_semtools/parsers/text
2026-10-16T16:42:14,119   copying src/py_semtools/parsers/text/text_pubmed_paper_parser.py -> build/lib/py_semtools/parsers/text
2026-10-16T16:42:14,121   copying src/py_semtools/parsers/text/text_pubmed_parser.py -> build/lib/py_semtools/parsers/text
2026-10-16T16:42:14,123   copying src/py_semtools/parsers/text/text_basic_parser.py -> build/lib/py_semtools/parsers/text
2026-10-16T16:42:14,125   copying src/py_semtools/parsers/text/text_pubmed_abstract_parser.py -> build/lib/py_semtools/parsers/text
2026-10-16T16:42:14,127   running egg_info
2026-10-16T16:42:14,145   writing src/py_semtools.egg-info/PKG-INFO
2026-10-16T16:42:14,150   writing dependency_links to src/py_semtools.egg-info/dependency_links.txt
2026-10-16T16:42:14,152   writing entry points to src/py_semtools.egg-info/entry_points.txt
2026-10-16T16:42:14,155   writing requirements to src/py_semtools.egg-info/requires.txt
2026-10-16T16:42:14,156   writing top-level names to src/py_semtools.egg-info/top_level.txt
2026-10-16T16:42:14,182   reading manifest file 'src/py_semtools.egg-info/SOURCES.txt'
2026-10-16T16:42:14,192   reading manifest template 'MANIFEST.in'
2026-10-16T16:42:14,193   warning: no files found matching 'py_semtools/external_data/ontologies.txt'
2026-10-16T16:42:14,193   adding license file 'LICENSE.txt'
2026-10-16T16:42:14,201   writing manifest file 'src/py_semtools.egg-info/SOURCES.txt'
2026-10-16T16:42:14,211   creating build/lib/py_semtools/external_data
2026-10-16T16:42:14,212   copying src/py_semtools/external_data/ontologies.txt -> build/lib/py_semtools/external_data
2026-10-16T16:42:14,215   creating build/lib/py_semtools/templates
2026-10-16T16:42:14,216   copying src/py_semtools/templates/comorb_sugg.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,218   copying src/py_semtools/templates/makeTermFreqDist.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,220   copying src/py_semtools/templates/makeTermFreqTable.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,222   copying src/py_semtools/templates/ontoICdist.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,224   copying src/py_semtools/templates/ontodist.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,227   copying src/py_semtools/templates/ontoplot.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,229   copying src/py_semtools/templates/plotClust.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,231   copying src/py_semtools/templates/plotProfRed.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,233   copying src/py_semtools/templates/report.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,235   copying src/py_semtools/templates/similarity_heatmap.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,237   copying src/py_semtools/templates/similarity_matrix.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,239   copying src/py_semtools/templates/stEngine.txt -> build/lib/py_semtools/templates
2026-10-16T16:42:14,260   installing to build/bdist.linux-armv7l/wheel
2026-10-16T16:42:14,261   running install
2026-10-16T16:42:14,283   running install_lib
2026-10-16T16:42:14,292   creating build/bdist.linux-armv7l/wheel
2026-10-16T16:42:14,295   creating build/bdist.linux-armv7l/wheel/py_semtools
2026-10-16T16:42:14,296   creating build/bdist.linux-armv7l/wheel/py_semtools/external_data
2026-10-16T16:42:14,298   copying build/lib/py_semtools/external_data/ontologies.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/external_data
2026-10-16T16:42:14,300   copying build/lib/py_semtools/report_ont.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-16T16:42:14,302   copying build/lib/py_semtools/parallelizer.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-16T16:42:14,304   copying build/lib/py_semtools/__init__.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-16T16:42:14,306   copying build/lib/py_semtools/sim_handler.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-16T16:42:14,309   creating build/bdist.linux-armv7l/wheel/py_semtools/indexers
2026-10-16T16:42:14,310   copying build/lib/py_semtools/indexers/text_indexer.py -> build/bdist.linux-armv7l/wheel/./py_semtools/indexers
2026-10-16T16:42:14,313   copying build/lib/py_semtools/main_modules.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-16T16:42:14,317   creating build/bdist.linux-armv7l/wheel/py_semtools/templates
2026-10-16T16:42:14,318   copying build/lib/py_semtools/templates/makeTermFreqTable.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,320   copying build/lib/py_semtools/templates/ontodist.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,321   copying build/lib/py_semtools/templates/plotProfRed.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,323   copying build/lib/py_semtools/templates/stEngine.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,325   copying build/lib/py_semtools/templates/similarity_heatmap.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,327   copying build/lib/py_semtools/templates/report.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,329   copying build/lib/py_semtools/templates/plotClust.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,330   copying build/lib/py_semtools/templates/comorb_sugg.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,333   copying build/lib/py_semtools/templates/ontoplot.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,335   copying build/lib/py_semtools/templates/makeTermFreqDist.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,337   copying build/lib/py_semtools/templates/ontoICdist.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,338   copying build/lib/py_semtools/templates/similarity_matrix.txt -> build/bdist.linux-armv7l/wheel/./py_semtools/templates
2026-10-16T16:42:14,340   copying build/lib/py_semtools/ontology.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-16T16:42:14,343   copying build/lib/py_semtools/cli_manager.py -> build/bdist.linux-armv7l/wheel/./py_semtools
2026-10-16T16:42:14,347   creating build/bdist.linux-armv7l/wheel/py_semtools/lexical_engines
2026-10-16T16:42:14,348   copying build/lib/py_semtools/lexical_engines/stEngine.py -> build/bdist.linux-armv7l/wheel/./py_semtools/lexical_engines
2026-10-16T16:42:14,350   copying build/lib/py_semtools/lexical_engines/engine_baseclass.py -> build/bdist.linux-armv7l/wheel/./py_semtools/lexical_engines
2026-10-16T16:42:14,352   copying build/lib/py_semtools/lexical_engines/fmEngine.py -> build/bdist.linux-armv7l/wheel/./py_semtools/lexical_engines
2026-10-16T16:42:14,355   copying build/lib/py_semtools/lexical_engines/llmEngine.py -> build/bdist.linux-armv7l/wheel/./py_semtools/lexical_engines
2026-10-16T16:42:14,357   creating build/bdist.linux-armv7l/wheel/py_semtools/parsers
2026-10-16T16:42:14,359   creating build/bdist.linux-armv7l/wheel/py_semtools/parsers/ont
2026-10-16T16:42:14,360   copying build/lib/py_semtools/parsers/ont/json_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/ont
2026-10-16T16:42:14,362   copying build/lib/py_semtools/parsers/ont/file_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/ont
2026-10-16T16:42:14,364   copying build/lib/py_semtools/parsers/ont/oboparser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/ont
2026-10-16T16:42:14,367   creating build/bdist.linux-armv7l/wheel/py_semtools/parsers/text
2026-10-16T16:42:14,368   copying build/lib/py_semtools/parsers/text/text_pubmed_paper_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text
2026-10-16T16:42:14,370   copying build/lib/py_semtools/parsers/text/text_pubmed_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text
2026-10-16T16:42:14,372   copying build/lib/py_semtools/parsers/text/text_basic_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text
2026-10-16T16:42:14,374   copying build/lib/py_semtools/parsers/text/text_pubmed_abstract_parser.py -> build/bdist.linux-armv7l/wheel/./py_semtools/parsers/text
2026-10-16T16:42:14,376   running install_egg_info
2026-10-16T16:42:14,390   Copying src/py_semtools.egg-info to build/bdist.linux-armv7l/wheel/./py_semtools-1.3.5-py3.11.egg-info
2026-10-16T16:42:14,408   running install_scripts
2026-10-16T16:42:14,421   creating build/bdist.linux-armv7l/wheel/py_semtools-1.3.5.dist-info/WHEEL
2026-10-16T16:42:14,424   creating '/tmp/pip-wheel-jl_0ln61/.tmp-vm03oo9b/py_semtools-1.3.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-10-16T16:42:14,426   adding 'py_semtools/__init__.py'
2026-10-16T16:42:14,431   adding 'py_semtools/cli_manager.py'
2026-10-16T16:42:14,438   adding 'py_semtools/main_modules.py'
2026-10-16T16:42:14,450   adding 'py_semtools/ontology.py'
2026-10-16T16:42:14,452   adding 'py_semtools/parallelizer.py'
2026-10-16T16:42:14,455   adding 'py_semtools/report_ont.py'
2026-10-16T16:42:14,457   adding 'py_semtools/sim_handler.py'
2026-10-16T16:42:14,459   adding 'py_semtools/external_data/ontologies.txt'
2026-10-16T16:42:14,461   adding 'py_semtools/indexers/text_indexer.py'
2026-10-16T16:42:14,464   adding 'py_semtools/lexical_engines/engine_baseclass.py'
2026-10-16T16:42:14,466   adding 'py_semtools/lexical_engines/fmEngine.py'
2026-10-16T16:42:14,467   adding 'py_semtools/lexical_engines/llmEngine.py'
2026-10-16T16:42:14,470   adding 'py_semtools/lexical_engines/stEngine.py'
2026-10-16T16:42:14,472   adding 'py_semtools/parsers/ont/file_parser.py'
2026-10-16T16:42:14,473   adding 'py_semtools/parsers/ont/json_parser.py'
2026-10-16T16:42:14,477   adding 'py_semtools/parsers/ont/oboparser.py'
2026-10-16T16:42:14,479   adding 'py_semtools/parsers/text/text_basic_parser.py'
2026-10-16T16:42:14,480   adding 'py_semtools/parsers/text/text_pubmed_abstract_parser.py'
2026-10-16T16:42:14,482   adding 'py_semtools/parsers/text/text_pubmed_paper_parser.py'
2026-10-16T16:42:14,483   adding 'py_semtools/parsers/text/text_pubmed_parser.py'
2026-10-16T16:42:14,485   adding 'py_semtools/templates/comorb_sugg.txt'
2026-10-16T16:42:14,486   adding 'py_semtools/templates/makeTermFreqDist.txt'
2026-10-16T16:42:14,487   adding 'py_semtools/templates/makeTermFreqTable.txt'
2026-10-16T16:42:14,489   adding 'py_semtools/templates/ontoICdist.txt'
2026-10-16T16:42:14,490   adding 'py_semtools/templates/ontodist.txt'
2026-10-16T16:42:14,492   adding 'py_semtools/templates/ontoplot.txt'
2026-10-16T16:42:14,493   adding 'py_semtools/templates/plotClust.txt'
2026-10-16T16:42:14,494   adding 'py_semtools/templates/plotProfRed.txt'
2026-10-16T16:42:14,495   adding 'py_semtools/templates/report.txt'
2026-10-16T16:42:14,497   adding 'py_semtools/templates/similarity_heatmap.txt'
2026-10-16T16:42:14,498   adding 'py_semtools/templates/similarity_matrix.txt'
2026-10-16T16:42:14,499   adding 'py_semtools/templates/stEngine.txt'
2026-10-16T16:42:14,502   adding 'py_semtools-1.3.5.dist-info/licenses/LICENSE.txt'
2026-10-16T16:42:14,503   adding 'py_semtools-1.3.5.dist-info/METADATA'
2026-10-16T16:42:14,504   adding 'py_semtools-1.3.5.dist-info/WHEEL'
2026-10-16T16:42:14,505   adding 'py_semtools-1.3.5.dist-info/entry_points.txt'
2026-10-16T16:42:14,506   adding 'py_semtools-1.3.5.dist-info/top_level.txt'
2026-10-16T16:42:14,507   adding 'py_semtools-1.3.5.dist-info/RECORD'
2026-10-16T16:42:14,510   removing build/bdist.linux-armv7l/wheel
2026-10-16T16:42:14,627   Building wheel for py-semtools (pyproject.toml): finished with status 'done'
2026-10-16T16:42:14,634   Created wheel for py-semtools: filename=py_semtools-1.3.5-py3-none-any.whl size=96103 sha256=6d664980f3497baee529e28bd30b94b6837a40b7c9117fc6de8a4fdcd01bfeb1
2026-10-16T16:42:14,635   Stored in directory: /tmp/pip-ephem-wheel-cache-8rxd476r/wheels/48/30/b8/f63163233a4ac090d0c12cbfacd86d62888221e620bd64da6c
2026-10-16T16:42:14,647 Successfully built py-semtools
2026-10-16T16:42:14,653 Removed build tracker: '/tmp/pip-build-tracker-apdv7gwq'