2026-10-16T22:30:59,359 Created temporary directory: /tmp/pip-ephem-wheel-cache-7hgfo6ct 2026-10-16T22:30:59,361 Created temporary directory: /tmp/pip-build-tracker-dw6srstn 2026-10-16T22:30:59,362 Initialized build tracking at /tmp/pip-build-tracker-dw6srstn 2026-10-16T22:30:59,362 Created build tracker: /tmp/pip-build-tracker-dw6srstn 2026-10-16T22:30:59,362 Entered build tracker: /tmp/pip-build-tracker-dw6srstn 2026-10-16T22:30:59,363 Created temporary directory: /tmp/pip-wheel-tohqt7e1 2026-10-16T22:30:59,366 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-16T22:30:59,369 Created temporary directory: /tmp/pip-ephem-wheel-cache-qpcoqebh 2026-10-16T22:30:59,390 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-16T22:30:59,394 2 location(s) to search for versions of orfdata: 2026-10-16T22:30:59,394 * https://pypi.org/simple/orfdata/ 2026-10-16T22:30:59,394 * https://www.piwheels.org/simple/orfdata/ 2026-10-16T22:30:59,395 Fetching project page and analyzing links: https://pypi.org/simple/orfdata/ 2026-10-16T22:30:59,395 Getting page https://pypi.org/simple/orfdata/ 2026-10-16T22:30:59,397 Found index url https://pypi.org/simple 2026-10-16T22:30:59,553 Fetched page https://pypi.org/simple/orfdata/ as application/vnd.pypi.simple.v1+json 2026-10-16T22:30:59,564 Skipping link: No binaries permitted for orfdata: 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https://www.piwheels.org/simple/orfdata/orfdata-0.13.0-py3-none-any.whl#sha256=708d789cb7f01da911c1fcb53fc613a51d08978dba516bfcf4facd40875c8520 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,812 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.12.0-py3-none-any.whl#sha256=3e780f6c92764092934f43d9e3bc69497fef3e5ed3b471e2dd9efb7468471787 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,813 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.11.0-py3-none-any.whl#sha256=ec7e6439aa6f450087fa88dd9e2e23d3a5ef83a772401622b95d910a4a1f029c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,813 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.10.0-py3-none-any.whl#sha256=65db21afdb89bc160b14dba56ee80f94a39ea9c448105c0d5255a1460cb50256 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,814 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.9.0-py3-none-any.whl#sha256=2830e8180c3401f1e765abeab2337101a052975afe794ac64c4824ac87b56f16 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,814 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.8.0-py3-none-any.whl#sha256=f3179a493af31d4bfa6ddbba319a30631c3d3e44a0fad13631528b545e3f80cb (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,815 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.7.0-py3-none-any.whl#sha256=9e751a35c69a35be7da570127ffc072ffc3c4ed9b5c2fd0005229d8e7a77c704 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,815 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.6.0-py3-none-any.whl#sha256=b3d9297d24bbed1ee31bdea06ffa1384d9b682a77f0f67b16f7daa70aeb00fa0 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,816 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.5.0-py3-none-any.whl#sha256=6f4b83f7f24964798138035d12bb887aa0f8ba522099a27d40dbe20e9231bc76 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,817 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.4.0-py3-none-any.whl#sha256=20e08e8c304140d95d4d7228e30c37a01119b4eb0a558f38868f65fa956c91d3 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,817 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.3.0-py3-none-any.whl#sha256=50842b5d601681d2d383b9606e337fb2b83af7c2bbbd6979e61f543c1a1651bd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,818 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.2.0-py3-none-any.whl#sha256=a889faefe720028ad527c5374560c0105d7d523a59d934e2df48a81a4d3afaf9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,818 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T22:30:59,819 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-10-16T22:30:59,819 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-10-16T22:30:59,842 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-10-16T22:30:59,861 Collecting orfdata==0.29.0 2026-10-16T22:30:59,863 Created temporary directory: /tmp/pip-unpack-xhs4wsf8 2026-10-16T22:31:00,018 Downloading orfdata-0.29.0.tar.gz (2.8 MB) 2026-10-16T22:31:00,927 Added orfdata==0.29.0 from https://files.pythonhosted.org/packages/10/d3/31e4f1cb491d3b90431b16bee3c3a4e3de1268716e9db343ef61da0ebec1/orfdata-0.29.0.tar.gz to build tracker '/tmp/pip-build-tracker-dw6srstn' 2026-10-16T22:31:00,932 Created temporary directory: /tmp/pip-build-env-u003svez 2026-10-16T22:31:00,937 Installing build dependencies: started 2026-10-16T22:31:00,938 Running command pip subprocess to install build dependencies 2026-10-16T22:31:02,060 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-10-16T22:31:02,525 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-16T22:31:02,548 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-16T22:31:04,322 Collecting setuptools>=77 2026-10-16T22:31:04,323 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-10-16T22:31:04,337 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-10-16T22:31:04,575 Collecting wheel 2026-10-16T22:31:04,576 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-10-16T22:31:04,589 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-10-16T22:31:04,773 Collecting packaging>=24.0 2026-10-16T22:31:04,774 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-10-16T22:31:04,786 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-10-16T22:31:04,978 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-16T22:31:04,998 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-16T22:31:05,063 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-16T22:31:05,100 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-16T22:31:05,132 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-16T22:31:05,215 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-16T22:31:08,002 Installing collected packages: setuptools, packaging, wheel 2026-10-16T22:31:10,739 Creating /tmp/pip-build-env-u003svez/overlay/local/bin 2026-10-16T22:31:10,741 changing mode of /tmp/pip-build-env-u003svez/overlay/local/bin/wheel to 755 2026-10-16T22:31:10,762 Successfully installed packaging-26.3 setuptools-84.0.0 wheel-0.48.0 2026-10-16T22:31:11,045 Installing build dependencies: finished with status 'done' 2026-10-16T22:31:11,051 Getting requirements to build wheel: started 2026-10-16T22:31:11,052 Running command Getting requirements to build wheel 2026-10-16T22:31:11,753 running egg_info 2026-10-16T22:31:11,759 writing orfdata.egg-info/PKG-INFO 2026-10-16T22:31:11,767 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-16T22:31:11,769 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-16T22:31:11,773 writing requirements to orfdata.egg-info/requires.txt 2026-10-16T22:31:11,775 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-16T22:31:11,807 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-16T22:31:11,820 reading manifest template 'MANIFEST.in' 2026-10-16T22:31:12,445 adding license file 'LICENSE' 2026-10-16T22:31:12,458 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-16T22:31:12,557 Getting requirements to build wheel: finished with status 'done' 2026-10-16T22:31:12,560 Created temporary directory: /tmp/pip-modern-metadata-kypwmzx1 2026-10-16T22:31:12,563 Preparing metadata (pyproject.toml): started 2026-10-16T22:31:12,564 Running command Preparing metadata (pyproject.toml) 2026-10-16T22:31:13,222 running dist_info 2026-10-16T22:31:13,232 creating /tmp/pip-modern-metadata-kypwmzx1/orfdata.egg-info 2026-10-16T22:31:13,233 writing /tmp/pip-modern-metadata-kypwmzx1/orfdata.egg-info/PKG-INFO 2026-10-16T22:31:13,240 writing dependency_links to /tmp/pip-modern-metadata-kypwmzx1/orfdata.egg-info/dependency_links.txt 2026-10-16T22:31:13,242 writing entry points to /tmp/pip-modern-metadata-kypwmzx1/orfdata.egg-info/entry_points.txt 2026-10-16T22:31:13,247 writing requirements to /tmp/pip-modern-metadata-kypwmzx1/orfdata.egg-info/requires.txt 2026-10-16T22:31:13,248 writing top-level names to /tmp/pip-modern-metadata-kypwmzx1/orfdata.egg-info/top_level.txt 2026-10-16T22:31:13,249 writing manifest file '/tmp/pip-modern-metadata-kypwmzx1/orfdata.egg-info/SOURCES.txt' 2026-10-16T22:31:13,276 reading manifest file '/tmp/pip-modern-metadata-kypwmzx1/orfdata.egg-info/SOURCES.txt' 2026-10-16T22:31:13,278 reading manifest template 'MANIFEST.in' 2026-10-16T22:31:13,638 adding license file 'LICENSE' 2026-10-16T22:31:13,647 writing manifest file '/tmp/pip-modern-metadata-kypwmzx1/orfdata.egg-info/SOURCES.txt' 2026-10-16T22:31:13,650 creating '/tmp/pip-modern-metadata-kypwmzx1/orfdata-0.29.0.dist-info' 2026-10-16T22:31:13,776 Preparing metadata (pyproject.toml): finished with status 'done' 2026-10-16T22:31:13,781 Source in /tmp/pip-wheel-tohqt7e1/orfdata_d5299d6fe1be4775b74d1cabf0d06ea0 has version 0.29.0, which satisfies requirement orfdata==0.29.0 from https://files.pythonhosted.org/packages/10/d3/31e4f1cb491d3b90431b16bee3c3a4e3de1268716e9db343ef61da0ebec1/orfdata-0.29.0.tar.gz 2026-10-16T22:31:13,782 Removed orfdata==0.29.0 from https://files.pythonhosted.org/packages/10/d3/31e4f1cb491d3b90431b16bee3c3a4e3de1268716e9db343ef61da0ebec1/orfdata-0.29.0.tar.gz from build tracker '/tmp/pip-build-tracker-dw6srstn' 2026-10-16T22:31:13,788 Created temporary directory: /tmp/pip-unpack-wyl0y5y2 2026-10-16T22:31:13,788 Building wheels for collected packages: orfdata 2026-10-16T22:31:13,792 Created temporary directory: /tmp/pip-wheel-2vh3ef96 2026-10-16T22:31:13,793 Destination directory: /tmp/pip-wheel-2vh3ef96 2026-10-16T22:31:13,796 Building wheel for orfdata (pyproject.toml): started 2026-10-16T22:31:13,797 Running command Building wheel for orfdata (pyproject.toml) 2026-10-16T22:31:14,437 running bdist_wheel 2026-10-16T22:31:14,454 running build 2026-10-16T22:31:14,455 running build_py 2026-10-16T22:31:14,461 creating build/lib/orfdata 2026-10-16T22:31:14,463 copying orfdata/__init__.py -> build/lib/orfdata 2026-10-16T22:31:14,465 copying orfdata/evidence.py -> build/lib/orfdata 2026-10-16T22:31:14,468 copying orfdata/dataset.py -> build/lib/orfdata 2026-10-16T22:31:14,471 copying orfdata/datasets.py -> build/lib/orfdata 2026-10-16T22:31:14,473 copying orfdata/catalog.py -> build/lib/orfdata 2026-10-16T22:31:14,476 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-10-16T22:31:14,478 copying orfdata/measurements.py -> build/lib/orfdata 2026-10-16T22:31:14,481 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-10-16T22:31:14,483 copying orfdata/build.py -> build/lib/orfdata 2026-10-16T22:31:14,485 copying orfdata/liftover.py -> build/lib/orfdata 2026-10-16T22:31:14,488 copying orfdata/search_reference.py -> build/lib/orfdata 2026-10-16T22:31:14,490 copying orfdata/_structure.py -> build/lib/orfdata 2026-10-16T22:31:14,492 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-10-16T22:31:14,494 copying orfdata/reference.py -> build/lib/orfdata 2026-10-16T22:31:14,497 copying orfdata/cli.py -> build/lib/orfdata 2026-10-16T22:31:14,499 copying orfdata/sequence.py -> build/lib/orfdata 2026-10-16T22:31:14,501 copying orfdata/catalogs.py -> build/lib/orfdata 2026-10-16T22:31:14,503 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-10-16T22:31:14,506 copying orfdata/viral.py -> build/lib/orfdata 2026-10-16T22:31:14,508 copying orfdata/pairing.py -> build/lib/orfdata 2026-10-16T22:31:14,511 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-10-16T22:31:14,513 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-10-16T22:31:14,515 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-10-16T22:31:14,517 copying orfdata/version.py -> build/lib/orfdata 2026-10-16T22:31:14,519 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-10-16T22:31:14,520 copying orfdata/model.py -> build/lib/orfdata 2026-10-16T22:31:14,523 copying orfdata/rna.py -> build/lib/orfdata 2026-10-16T22:31:14,525 copying orfdata/genomes.py -> build/lib/orfdata 2026-10-16T22:31:14,528 copying orfdata/proteome.py -> build/lib/orfdata 2026-10-16T22:31:14,531 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-10-16T22:31:14,533 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-10-16T22:31:14,535 copying orfdata/install.py -> build/lib/orfdata 2026-10-16T22:31:14,538 creating build/lib/orfdata/sources 2026-10-16T22:31:14,539 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-10-16T22:31:14,541 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-10-16T22:31:14,543 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-10-16T22:31:14,545 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-10-16T22:31:14,548 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-10-16T22:31:14,550 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-10-16T22:31:14,553 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-10-16T22:31:14,556 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-10-16T22:31:14,558 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-10-16T22:31:14,562 running egg_info 2026-10-16T22:31:14,572 writing orfdata.egg-info/PKG-INFO 2026-10-16T22:31:14,579 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-16T22:31:14,581 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-16T22:31:14,585 writing requirements to orfdata.egg-info/requires.txt 2026-10-16T22:31:14,586 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-16T22:31:14,605 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-16T22:31:14,618 reading manifest template 'MANIFEST.in' 2026-10-16T22:31:14,984 adding license file 'LICENSE' 2026-10-16T22:31:14,997 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-16T22:31:15,010 creating build/lib/orfdata/data/uorf-evidence 2026-10-16T22:31:15,012 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-10-16T22:31:15,027 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-10-16T22:31:15,029 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-16T22:31:15,031 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-16T22:31:15,033 creating build/lib/orfdata/data/orf-evidence 2026-10-16T22:31:15,034 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-10-16T22:31:15,057 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-10-16T22:31:15,059 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-16T22:31:15,062 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-16T22:31:15,064 creating build/lib/orfdata/data/ires 2026-10-16T22:31:15,065 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-10-16T22:31:15,068 creating build/lib/orfdata/data/viral 2026-10-16T22:31:15,069 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-10-16T22:31:15,072 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-10-16T22:31:15,074 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-10-16T22:31:15,078 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-10-16T22:31:15,081 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-10-16T22:31:15,084 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-10-16T22:31:15,105 installing to build/bdist.linux-armv7l/wheel 2026-10-16T22:31:15,106 running install 2026-10-16T22:31:15,129 running install_lib 2026-10-16T22:31:15,135 creating build/bdist.linux-armv7l/wheel 2026-10-16T22:31:15,138 creating build/bdist.linux-armv7l/wheel/orfdata 2026-10-16T22:31:15,140 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,142 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,145 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,148 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,150 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,154 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,157 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,160 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,162 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,165 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,168 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,171 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,174 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-10-16T22:31:15,175 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T22:31:15,177 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T22:31:15,180 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T22:31:15,183 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T22:31:15,185 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T22:31:15,188 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T22:31:15,191 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T22:31:15,193 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T22:31:15,196 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T22:31:15,198 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,201 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,203 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,207 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-10-16T22:31:15,208 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-16T22:31:15,211 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-10-16T22:31:15,213 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-16T22:31:15,215 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-16T22:31:15,217 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-16T22:31:15,220 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-10-16T22:31:15,222 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-16T22:31:15,239 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-16T22:31:15,242 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-16T22:31:15,245 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-16T22:31:15,249 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-10-16T22:31:15,250 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-10-16T22:31:15,254 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-16T22:31:15,258 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-10-16T22:31:15,259 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-16T22:31:15,289 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-16T22:31:15,291 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-16T22:31:15,294 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-16T22:31:15,296 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-16T22:31:15,300 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,303 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,306 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,309 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,311 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,314 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,317 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,319 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,322 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,324 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,326 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,329 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,332 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,335 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,339 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,341 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,344 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T22:31:15,347 running install_egg_info 2026-10-16T22:31:15,353 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.29.0-py3.11.egg-info 2026-10-16T22:31:15,368 running install_scripts 2026-10-16T22:31:15,382 creating build/bdist.linux-armv7l/wheel/orfdata-0.29.0.dist-info/WHEEL 2026-10-16T22:31:15,386 creating '/tmp/pip-wheel-2vh3ef96/.tmp-psohfddz/orfdata-0.29.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-10-16T22:31:15,390 adding 'orfdata/__init__.py' 2026-10-16T22:31:15,392 adding 'orfdata/_pinned_genome.py' 2026-10-16T22:31:15,394 adding 'orfdata/_structure.py' 2026-10-16T22:31:15,400 adding 'orfdata/build.py' 2026-10-16T22:31:15,411 adding 'orfdata/catalog.py' 2026-10-16T22:31:15,414 adding 'orfdata/catalog_cli.py' 2026-10-16T22:31:15,416 adding 'orfdata/catalog_manifest.py' 2026-10-16T22:31:15,419 adding 'orfdata/catalogs.py' 2026-10-16T22:31:15,422 adding 'orfdata/cli.py' 2026-10-16T22:31:15,428 adding 'orfdata/dataset.py' 2026-10-16T22:31:15,430 adding 'orfdata/dataset_cli.py' 2026-10-16T22:31:15,432 adding 'orfdata/datasets.py' 2026-10-16T22:31:15,435 adding 'orfdata/evidence.py' 2026-10-16T22:31:15,436 adding 'orfdata/evidence_summary.py' 2026-10-16T22:31:15,438 adding 'orfdata/genomes.py' 2026-10-16T22:31:15,439 adding 'orfdata/genomes_cli.py' 2026-10-16T22:31:15,441 adding 'orfdata/initiation_context.py' 2026-10-16T22:31:15,443 adding 'orfdata/install.py' 2026-10-16T22:31:15,446 adding 'orfdata/liftover.py' 2026-10-16T22:31:15,447 adding 'orfdata/liftover_cli.py' 2026-10-16T22:31:15,450 adding 'orfdata/measurements.py' 2026-10-16T22:31:15,454 adding 'orfdata/model.py' 2026-10-16T22:31:15,457 adding 'orfdata/pairing.py' 2026-10-16T22:31:15,463 adding 'orfdata/proteome.py' 2026-10-16T22:31:15,465 adding 'orfdata/proteome_cli.py' 2026-10-16T22:31:15,467 adding 'orfdata/reference.py' 2026-10-16T22:31:15,469 adding 'orfdata/reference_mapping.py' 2026-10-16T22:31:15,471 adding 'orfdata/rna.py' 2026-10-16T22:31:15,473 adding 'orfdata/search_reference.py' 2026-10-16T22:31:15,475 adding 'orfdata/sequence.py' 2026-10-16T22:31:15,476 adding 'orfdata/version.py' 2026-10-16T22:31:15,478 adding 'orfdata/viral.py' 2026-10-16T22:31:15,480 adding 'orfdata/data/catalogs.json' 2026-10-16T22:31:15,482 adding 'orfdata/data/chains.json' 2026-10-16T22:31:15,487 adding 'orfdata/data/datasets.json' 2026-10-16T22:31:15,489 adding 'orfdata/data/genomes.json' 2026-10-16T22:31:15,492 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-10-16T22:31:15,494 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-10-16T22:31:15,496 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-10-16T22:31:15,650 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-10-16T22:31:15,660 adding 'orfdata/data/orf-evidence/manifest.json' 2026-10-16T22:31:15,661 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-10-16T22:31:15,662 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-10-16T22:31:15,742 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-10-16T22:31:15,748 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-10-16T22:31:15,749 adding 'orfdata/data/viral/NOTICE.md' 2026-10-16T22:31:15,751 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-10-16T22:31:15,752 adding 'orfdata/sources/__init__.py' 2026-10-16T22:31:15,755 adding 'orfdata/sources/copy.py' 2026-10-16T22:31:15,757 adding 'orfdata/sources/ingolia.py' 2026-10-16T22:31:15,759 adding 'orfdata/sources/ncorf_mammals.py' 2026-10-16T22:31:15,761 adding 'orfdata/sources/openprot.py' 2026-10-16T22:31:15,763 adding 'orfdata/sources/pfizer.py' 2026-10-16T22:31:15,765 adding 'orfdata/sources/pfizer_rna.py' 2026-10-16T22:31:15,767 adding 'orfdata/sources/riborf.py' 2026-10-16T22:31:15,770 adding 'orfdata/sources/wang.py' 2026-10-16T22:31:15,773 adding 'orfdata-0.29.0.dist-info/licenses/LICENSE' 2026-10-16T22:31:15,775 adding 'orfdata-0.29.0.dist-info/METADATA' 2026-10-16T22:31:15,776 adding 'orfdata-0.29.0.dist-info/WHEEL' 2026-10-16T22:31:15,777 adding 'orfdata-0.29.0.dist-info/entry_points.txt' 2026-10-16T22:31:15,778 adding 'orfdata-0.29.0.dist-info/top_level.txt' 2026-10-16T22:31:15,779 adding 'orfdata-0.29.0.dist-info/RECORD' 2026-10-16T22:31:15,805 removing build/bdist.linux-armv7l/wheel 2026-10-16T22:31:15,920 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-10-16T22:31:15,977 Created wheel for orfdata: filename=orfdata-0.29.0-py3-none-any.whl size=2078526 sha256=1e7f9dafbee2f86a5965b15c0b8a0e01eca6e0b1bc8f0f69678f17b1492d428e 2026-10-16T22:31:15,978 Stored in directory: /tmp/pip-ephem-wheel-cache-qpcoqebh/wheels/72/12/6f/18cc9a644a75a83de54242c2981c46681e893294530e2a1c99 2026-10-16T22:31:15,991 Successfully built orfdata 2026-10-16T22:31:16,043 Removed build tracker: '/tmp/pip-build-tracker-dw6srstn'