2026-10-16T23:02:45,069 Created temporary directory: /tmp/pip-ephem-wheel-cache-ezvs73vm 2026-10-16T23:02:45,071 Created temporary directory: /tmp/pip-build-tracker-f1v3zc42 2026-10-16T23:02:45,072 Initialized build tracking at /tmp/pip-build-tracker-f1v3zc42 2026-10-16T23:02:45,073 Created build tracker: /tmp/pip-build-tracker-f1v3zc42 2026-10-16T23:02:45,073 Entered build tracker: /tmp/pip-build-tracker-f1v3zc42 2026-10-16T23:02:45,074 Created temporary directory: /tmp/pip-wheel-mbmwbau5 2026-10-16T23:02:45,077 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-16T23:02:45,079 Created temporary directory: /tmp/pip-ephem-wheel-cache-y866sycy 2026-10-16T23:02:45,101 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-16T23:02:45,104 2 location(s) to search for versions of orfdata: 2026-10-16T23:02:45,104 * https://pypi.org/simple/orfdata/ 2026-10-16T23:02:45,104 * https://www.piwheels.org/simple/orfdata/ 2026-10-16T23:02:45,105 Fetching project page and analyzing links: https://pypi.org/simple/orfdata/ 2026-10-16T23:02:45,106 Getting page https://pypi.org/simple/orfdata/ 2026-10-16T23:02:45,107 Found index url https://pypi.org/simple 2026-10-16T23:02:45,262 Fetched page https://pypi.org/simple/orfdata/ as application/vnd.pypi.simple.v1+json 2026-10-16T23:02:45,272 Skipping link: No binaries permitted for orfdata: 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(requires-python:>=3.9), version: 0.15.0 2026-10-16T23:02:45,296 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/fe/30/09122efb9da979b3a0c70caea85feed7127b64fe3b47d826b081a920b17c/orfdata-0.16.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,296 Found link https://files.pythonhosted.org/packages/d5/a5/e340288e5ced0d427ecac1e87244b8091017de6a8d0dad21868ba06f6c75/orfdata-0.16.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.16.0 2026-10-16T23:02:45,297 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/1f/44/a979b2a60e46ff76f75c94637dfa11fb1806b9e63f9061f81b7974b09e8b/orfdata-0.17.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,298 Found link 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https://www.piwheels.org/simple/orfdata/orfdata-0.14.0-py3-none-any.whl#sha256=68a02237b184e2eb712854f94f1a3e121e1cffe3c76378bbc33a0ee2049c1f89 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,515 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.13.0-py3-none-any.whl#sha256=708d789cb7f01da911c1fcb53fc613a51d08978dba516bfcf4facd40875c8520 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,515 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.12.0-py3-none-any.whl#sha256=3e780f6c92764092934f43d9e3bc69497fef3e5ed3b471e2dd9efb7468471787 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,516 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.11.0-py3-none-any.whl#sha256=ec7e6439aa6f450087fa88dd9e2e23d3a5ef83a772401622b95d910a4a1f029c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,516 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.10.0-py3-none-any.whl#sha256=65db21afdb89bc160b14dba56ee80f94a39ea9c448105c0d5255a1460cb50256 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,517 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.9.0-py3-none-any.whl#sha256=2830e8180c3401f1e765abeab2337101a052975afe794ac64c4824ac87b56f16 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,517 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.8.0-py3-none-any.whl#sha256=f3179a493af31d4bfa6ddbba319a30631c3d3e44a0fad13631528b545e3f80cb (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,518 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.7.0-py3-none-any.whl#sha256=9e751a35c69a35be7da570127ffc072ffc3c4ed9b5c2fd0005229d8e7a77c704 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,518 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.6.0-py3-none-any.whl#sha256=b3d9297d24bbed1ee31bdea06ffa1384d9b682a77f0f67b16f7daa70aeb00fa0 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,519 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.5.0-py3-none-any.whl#sha256=6f4b83f7f24964798138035d12bb887aa0f8ba522099a27d40dbe20e9231bc76 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,519 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.4.0-py3-none-any.whl#sha256=20e08e8c304140d95d4d7228e30c37a01119b4eb0a558f38868f65fa956c91d3 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,520 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.3.0-py3-none-any.whl#sha256=50842b5d601681d2d383b9606e337fb2b83af7c2bbbd6979e61f543c1a1651bd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,520 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.2.0-py3-none-any.whl#sha256=a889faefe720028ad527c5374560c0105d7d523a59d934e2df48a81a4d3afaf9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,521 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-16T23:02:45,521 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-10-16T23:02:45,522 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-10-16T23:02:45,544 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-10-16T23:02:45,562 Collecting orfdata==0.30.0 2026-10-16T23:02:45,564 Created temporary directory: /tmp/pip-unpack-h2ndkowe 2026-10-16T23:02:45,728 Downloading orfdata-0.30.0.tar.gz (3.1 MB) 2026-10-16T23:02:46,662 Added orfdata==0.30.0 from https://files.pythonhosted.org/packages/17/54/3957aa3929d6ff8324203d82f05273a8fc6092013283584a0c4828105f27/orfdata-0.30.0.tar.gz to build tracker '/tmp/pip-build-tracker-f1v3zc42' 2026-10-16T23:02:46,668 Created temporary directory: /tmp/pip-build-env-sdy3yfvb 2026-10-16T23:02:46,672 Installing build dependencies: started 2026-10-16T23:02:46,673 Running command pip subprocess to install build dependencies 2026-10-16T23:02:47,787 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-10-16T23:02:48,216 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-16T23:02:48,238 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-16T23:02:49,993 Collecting setuptools>=77 2026-10-16T23:02:49,995 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-10-16T23:02:50,014 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-10-16T23:02:50,274 Collecting wheel 2026-10-16T23:02:50,275 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-10-16T23:02:50,289 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-10-16T23:02:50,476 Collecting packaging>=24.0 2026-10-16T23:02:50,477 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-10-16T23:02:50,505 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-10-16T23:02:50,717 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-16T23:02:50,741 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-16T23:02:50,829 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-16T23:02:50,871 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-16T23:02:50,906 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-16T23:02:50,989 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-16T23:02:53,781 Installing collected packages: setuptools, packaging, wheel 2026-10-16T23:02:56,441 Creating /tmp/pip-build-env-sdy3yfvb/overlay/local/bin 2026-10-16T23:02:56,443 changing mode of /tmp/pip-build-env-sdy3yfvb/overlay/local/bin/wheel to 755 2026-10-16T23:02:56,464 Successfully installed packaging-26.3 setuptools-84.0.0 wheel-0.48.0 2026-10-16T23:02:56,749 Installing build dependencies: finished with status 'done' 2026-10-16T23:02:56,755 Getting requirements to build wheel: started 2026-10-16T23:02:56,756 Running command Getting requirements to build wheel 2026-10-16T23:02:57,458 running egg_info 2026-10-16T23:02:57,463 writing orfdata.egg-info/PKG-INFO 2026-10-16T23:02:57,471 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-16T23:02:57,473 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-16T23:02:57,477 writing requirements to orfdata.egg-info/requires.txt 2026-10-16T23:02:57,478 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-16T23:02:57,510 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-16T23:02:57,524 reading manifest template 'MANIFEST.in' 2026-10-16T23:02:57,966 adding license file 'LICENSE' 2026-10-16T23:02:57,980 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-16T23:02:58,079 Getting requirements to build wheel: finished with status 'done' 2026-10-16T23:02:58,083 Created temporary directory: /tmp/pip-modern-metadata-g_vrev3f 2026-10-16T23:02:58,085 Preparing metadata (pyproject.toml): started 2026-10-16T23:02:58,086 Running command Preparing metadata (pyproject.toml) 2026-10-16T23:02:58,779 running dist_info 2026-10-16T23:02:58,790 creating /tmp/pip-modern-metadata-g_vrev3f/orfdata.egg-info 2026-10-16T23:02:58,791 writing /tmp/pip-modern-metadata-g_vrev3f/orfdata.egg-info/PKG-INFO 2026-10-16T23:02:58,799 writing dependency_links to /tmp/pip-modern-metadata-g_vrev3f/orfdata.egg-info/dependency_links.txt 2026-10-16T23:02:58,800 writing entry points to /tmp/pip-modern-metadata-g_vrev3f/orfdata.egg-info/entry_points.txt 2026-10-16T23:02:58,805 writing requirements to /tmp/pip-modern-metadata-g_vrev3f/orfdata.egg-info/requires.txt 2026-10-16T23:02:58,806 writing top-level names to /tmp/pip-modern-metadata-g_vrev3f/orfdata.egg-info/top_level.txt 2026-10-16T23:02:58,807 writing manifest file '/tmp/pip-modern-metadata-g_vrev3f/orfdata.egg-info/SOURCES.txt' 2026-10-16T23:02:58,835 reading manifest file '/tmp/pip-modern-metadata-g_vrev3f/orfdata.egg-info/SOURCES.txt' 2026-10-16T23:02:58,837 reading manifest template 'MANIFEST.in' 2026-10-16T23:02:59,255 adding license file 'LICENSE' 2026-10-16T23:02:59,266 writing manifest file '/tmp/pip-modern-metadata-g_vrev3f/orfdata.egg-info/SOURCES.txt' 2026-10-16T23:02:59,267 creating '/tmp/pip-modern-metadata-g_vrev3f/orfdata-0.30.0.dist-info' 2026-10-16T23:02:59,395 Preparing metadata (pyproject.toml): finished with status 'done' 2026-10-16T23:02:59,400 Source in /tmp/pip-wheel-mbmwbau5/orfdata_be4f6ac6a3714f22ab606d9b910e93ef has version 0.30.0, which satisfies requirement orfdata==0.30.0 from https://files.pythonhosted.org/packages/17/54/3957aa3929d6ff8324203d82f05273a8fc6092013283584a0c4828105f27/orfdata-0.30.0.tar.gz 2026-10-16T23:02:59,401 Removed orfdata==0.30.0 from https://files.pythonhosted.org/packages/17/54/3957aa3929d6ff8324203d82f05273a8fc6092013283584a0c4828105f27/orfdata-0.30.0.tar.gz from build tracker '/tmp/pip-build-tracker-f1v3zc42' 2026-10-16T23:02:59,406 Created temporary directory: /tmp/pip-unpack-naowbnnn 2026-10-16T23:02:59,407 Building wheels for collected packages: orfdata 2026-10-16T23:02:59,412 Created temporary directory: /tmp/pip-wheel-nyr29emn 2026-10-16T23:02:59,412 Destination directory: /tmp/pip-wheel-nyr29emn 2026-10-16T23:02:59,414 Building wheel for orfdata (pyproject.toml): started 2026-10-16T23:02:59,416 Running command Building wheel for orfdata (pyproject.toml) 2026-10-16T23:03:00,048 running bdist_wheel 2026-10-16T23:03:00,065 running build 2026-10-16T23:03:00,066 running build_py 2026-10-16T23:03:00,073 creating build/lib/orfdata 2026-10-16T23:03:00,075 copying orfdata/search_reference.py -> build/lib/orfdata 2026-10-16T23:03:00,077 copying orfdata/reference.py -> build/lib/orfdata 2026-10-16T23:03:00,080 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-10-16T23:03:00,082 copying orfdata/evidence.py -> build/lib/orfdata 2026-10-16T23:03:00,084 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-10-16T23:03:00,086 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-10-16T23:03:00,088 copying orfdata/build.py -> build/lib/orfdata 2026-10-16T23:03:00,091 copying orfdata/sequence.py -> build/lib/orfdata 2026-10-16T23:03:00,093 copying orfdata/catalogs.py -> build/lib/orfdata 2026-10-16T23:03:00,095 copying orfdata/catalog.py -> build/lib/orfdata 2026-10-16T23:03:00,099 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-10-16T23:03:00,101 copying orfdata/genomes.py -> build/lib/orfdata 2026-10-16T23:03:00,103 copying orfdata/viral.py -> build/lib/orfdata 2026-10-16T23:03:00,105 copying orfdata/__init__.py -> build/lib/orfdata 2026-10-16T23:03:00,108 copying orfdata/version.py -> build/lib/orfdata 2026-10-16T23:03:00,109 copying orfdata/_structure.py -> build/lib/orfdata 2026-10-16T23:03:00,112 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-10-16T23:03:00,114 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-10-16T23:03:00,116 copying orfdata/datasets.py -> build/lib/orfdata 2026-10-16T23:03:00,119 copying orfdata/pairing.py -> build/lib/orfdata 2026-10-16T23:03:00,121 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-10-16T23:03:00,123 copying orfdata/model.py -> build/lib/orfdata 2026-10-16T23:03:00,126 copying orfdata/cli.py -> build/lib/orfdata 2026-10-16T23:03:00,129 copying orfdata/proteome.py -> build/lib/orfdata 2026-10-16T23:03:00,132 copying orfdata/dataset.py -> build/lib/orfdata 2026-10-16T23:03:00,135 copying orfdata/install.py -> build/lib/orfdata 2026-10-16T23:03:00,137 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-10-16T23:03:00,140 copying orfdata/measurements.py -> build/lib/orfdata 2026-10-16T23:03:00,142 copying orfdata/rna.py -> build/lib/orfdata 2026-10-16T23:03:00,145 copying orfdata/liftover.py -> build/lib/orfdata 2026-10-16T23:03:00,148 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-10-16T23:03:00,150 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-10-16T23:03:00,153 creating build/lib/orfdata/sources 2026-10-16T23:03:00,154 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-10-16T23:03:00,157 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-10-16T23:03:00,159 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-10-16T23:03:00,161 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-10-16T23:03:00,164 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-10-16T23:03:00,165 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-10-16T23:03:00,168 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-10-16T23:03:00,170 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-10-16T23:03:00,173 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-10-16T23:03:00,177 running egg_info 2026-10-16T23:03:00,187 writing orfdata.egg-info/PKG-INFO 2026-10-16T23:03:00,194 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-16T23:03:00,195 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-16T23:03:00,199 writing requirements to orfdata.egg-info/requires.txt 2026-10-16T23:03:00,200 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-16T23:03:00,219 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-16T23:03:00,233 reading manifest template 'MANIFEST.in' 2026-10-16T23:03:00,748 adding license file 'LICENSE' 2026-10-16T23:03:00,761 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-16T23:03:00,774 creating build/lib/orfdata/data/uorf-evidence 2026-10-16T23:03:00,776 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-16T23:03:00,778 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-16T23:03:00,780 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-10-16T23:03:00,796 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-10-16T23:03:00,798 creating build/lib/orfdata/data/orf-evidence 2026-10-16T23:03:00,799 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-16T23:03:00,801 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-16T23:03:00,803 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-10-16T23:03:00,835 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-10-16T23:03:00,837 creating build/lib/orfdata/data/ires 2026-10-16T23:03:00,838 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-10-16T23:03:00,841 creating build/lib/orfdata/data/viral 2026-10-16T23:03:00,842 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-10-16T23:03:00,844 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-10-16T23:03:00,847 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-10-16T23:03:00,854 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-10-16T23:03:00,859 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-10-16T23:03:00,862 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-10-16T23:03:00,882 installing to build/bdist.linux-armv7l/wheel 2026-10-16T23:03:00,883 running install 2026-10-16T23:03:00,905 running install_lib 2026-10-16T23:03:00,911 creating build/bdist.linux-armv7l/wheel 2026-10-16T23:03:00,914 creating build/bdist.linux-armv7l/wheel/orfdata 2026-10-16T23:03:00,915 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,918 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,921 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,922 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,925 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,927 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,929 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,932 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,934 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,937 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,941 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,943 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,945 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,948 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-10-16T23:03:00,949 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T23:03:00,952 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T23:03:00,954 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T23:03:00,956 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T23:03:00,959 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T23:03:00,961 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T23:03:00,963 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T23:03:00,966 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T23:03:00,968 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-16T23:03:00,971 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:00,974 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-10-16T23:03:00,975 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-16T23:03:00,980 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-10-16T23:03:00,981 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-16T23:03:00,983 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-16T23:03:00,985 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-16T23:03:01,013 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-16T23:03:01,015 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-16T23:03:01,017 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-16T23:03:01,021 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-10-16T23:03:01,022 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-16T23:03:01,024 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-16T23:03:01,026 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-16T23:03:01,040 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-16T23:03:01,042 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-10-16T23:03:01,044 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-16T23:03:01,046 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-16T23:03:01,049 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-10-16T23:03:01,051 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-10-16T23:03:01,055 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-16T23:03:01,058 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,061 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,064 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,068 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,070 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,073 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,076 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,079 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,083 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,086 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,089 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,093 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,095 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,098 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,101 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,104 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,107 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,109 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-16T23:03:01,112 running install_egg_info 2026-10-16T23:03:01,118 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.30.0-py3.11.egg-info 2026-10-16T23:03:01,133 running install_scripts 2026-10-16T23:03:01,156 creating build/bdist.linux-armv7l/wheel/orfdata-0.30.0.dist-info/WHEEL 2026-10-16T23:03:01,165 creating '/tmp/pip-wheel-nyr29emn/.tmp-5l8t54_7/orfdata-0.30.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-10-16T23:03:01,172 adding 'orfdata/__init__.py' 2026-10-16T23:03:01,175 adding 'orfdata/_pinned_genome.py' 2026-10-16T23:03:01,178 adding 'orfdata/_structure.py' 2026-10-16T23:03:01,182 adding 'orfdata/build.py' 2026-10-16T23:03:01,191 adding 'orfdata/catalog.py' 2026-10-16T23:03:01,193 adding 'orfdata/catalog_cli.py' 2026-10-16T23:03:01,195 adding 'orfdata/catalog_manifest.py' 2026-10-16T23:03:01,198 adding 'orfdata/catalogs.py' 2026-10-16T23:03:01,200 adding 'orfdata/cli.py' 2026-10-16T23:03:01,205 adding 'orfdata/dataset.py' 2026-10-16T23:03:01,208 adding 'orfdata/dataset_cli.py' 2026-10-16T23:03:01,210 adding 'orfdata/datasets.py' 2026-10-16T23:03:01,213 adding 'orfdata/evidence.py' 2026-10-16T23:03:01,215 adding 'orfdata/evidence_summary.py' 2026-10-16T23:03:01,217 adding 'orfdata/genomes.py' 2026-10-16T23:03:01,219 adding 'orfdata/genomes_cli.py' 2026-10-16T23:03:01,221 adding 'orfdata/initiation_context.py' 2026-10-16T23:03:01,223 adding 'orfdata/install.py' 2026-10-16T23:03:01,226 adding 'orfdata/liftover.py' 2026-10-16T23:03:01,229 adding 'orfdata/liftover_cli.py' 2026-10-16T23:03:01,231 adding 'orfdata/measurements.py' 2026-10-16T23:03:01,237 adding 'orfdata/model.py' 2026-10-16T23:03:01,240 adding 'orfdata/pairing.py' 2026-10-16T23:03:01,247 adding 'orfdata/proteome.py' 2026-10-16T23:03:01,249 adding 'orfdata/proteome_cli.py' 2026-10-16T23:03:01,251 adding 'orfdata/reference.py' 2026-10-16T23:03:01,254 adding 'orfdata/reference_mapping.py' 2026-10-16T23:03:01,256 adding 'orfdata/rna.py' 2026-10-16T23:03:01,259 adding 'orfdata/search_reference.py' 2026-10-16T23:03:01,261 adding 'orfdata/sequence.py' 2026-10-16T23:03:01,262 adding 'orfdata/version.py' 2026-10-16T23:03:01,264 adding 'orfdata/viral.py' 2026-10-16T23:03:01,268 adding 'orfdata/data/catalogs.json' 2026-10-16T23:03:01,270 adding 'orfdata/data/chains.json' 2026-10-16T23:03:01,276 adding 'orfdata/data/datasets.json' 2026-10-16T23:03:01,278 adding 'orfdata/data/genomes.json' 2026-10-16T23:03:01,282 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-10-16T23:03:01,284 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-10-16T23:03:01,286 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-10-16T23:03:01,501 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-10-16T23:03:01,512 adding 'orfdata/data/orf-evidence/manifest.json' 2026-10-16T23:03:01,514 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-10-16T23:03:01,515 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-10-16T23:03:01,596 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-10-16T23:03:01,602 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-10-16T23:03:01,604 adding 'orfdata/data/viral/NOTICE.md' 2026-10-16T23:03:01,606 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-10-16T23:03:01,608 adding 'orfdata/sources/__init__.py' 2026-10-16T23:03:01,612 adding 'orfdata/sources/copy.py' 2026-10-16T23:03:01,614 adding 'orfdata/sources/ingolia.py' 2026-10-16T23:03:01,617 adding 'orfdata/sources/ncorf_mammals.py' 2026-10-16T23:03:01,619 adding 'orfdata/sources/openprot.py' 2026-10-16T23:03:01,621 adding 'orfdata/sources/pfizer.py' 2026-10-16T23:03:01,624 adding 'orfdata/sources/pfizer_rna.py' 2026-10-16T23:03:01,627 adding 'orfdata/sources/riborf.py' 2026-10-16T23:03:01,630 adding 'orfdata/sources/wang.py' 2026-10-16T23:03:01,635 adding 'orfdata-0.30.0.dist-info/licenses/LICENSE' 2026-10-16T23:03:01,637 adding 'orfdata-0.30.0.dist-info/METADATA' 2026-10-16T23:03:01,638 adding 'orfdata-0.30.0.dist-info/WHEEL' 2026-10-16T23:03:01,640 adding 'orfdata-0.30.0.dist-info/entry_points.txt' 2026-10-16T23:03:01,641 adding 'orfdata-0.30.0.dist-info/top_level.txt' 2026-10-16T23:03:01,643 adding 'orfdata-0.30.0.dist-info/RECORD' 2026-10-16T23:03:01,678 removing build/bdist.linux-armv7l/wheel 2026-10-16T23:03:01,795 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-10-16T23:03:01,843 Created wheel for orfdata: filename=orfdata-0.30.0-py3-none-any.whl size=2083904 sha256=61decb0293b92c1a9797112f682ca8a89087e52bf1aabf4052374820d8461ba9 2026-10-16T23:03:01,845 Stored in directory: /tmp/pip-ephem-wheel-cache-y866sycy/wheels/79/4c/d4/69b026e8187d2c2c1a62fa06bf1c41b84b9382e7f41ef77728 2026-10-16T23:03:01,858 Successfully built orfdata 2026-10-16T23:03:01,912 Removed build tracker: '/tmp/pip-build-tracker-f1v3zc42'