2026-10-17T03:59:53,071 Created temporary directory: /tmp/pip-ephem-wheel-cache-veuesfv0 2026-10-17T03:59:53,073 Created temporary directory: /tmp/pip-build-tracker-b8neg_0o 2026-10-17T03:59:53,074 Initialized build tracking at /tmp/pip-build-tracker-b8neg_0o 2026-10-17T03:59:53,074 Created build tracker: /tmp/pip-build-tracker-b8neg_0o 2026-10-17T03:59:53,075 Entered build tracker: /tmp/pip-build-tracker-b8neg_0o 2026-10-17T03:59:53,076 Created temporary directory: /tmp/pip-wheel-cdd0h69f 2026-10-17T03:59:53,079 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-17T03:59:53,081 Created temporary directory: /tmp/pip-ephem-wheel-cache-ljkid86h 2026-10-17T03:59:53,102 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-17T03:59:53,106 2 location(s) to search for versions of orfdata: 2026-10-17T03:59:53,106 * https://pypi.org/simple/orfdata/ 2026-10-17T03:59:53,106 * https://www.piwheels.org/simple/orfdata/ 2026-10-17T03:59:53,107 Fetching project page and analyzing links: https://pypi.org/simple/orfdata/ 2026-10-17T03:59:53,107 Getting page https://pypi.org/simple/orfdata/ 2026-10-17T03:59:53,109 Found index url https://pypi.org/simple 2026-10-17T03:59:53,266 Fetched page https://pypi.org/simple/orfdata/ as application/vnd.pypi.simple.v1+json 2026-10-17T03:59:53,276 Skipping link: No binaries permitted for orfdata: 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(requires-python:>=3.9), version: 0.15.0 2026-10-17T03:59:53,301 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/fe/30/09122efb9da979b3a0c70caea85feed7127b64fe3b47d826b081a920b17c/orfdata-0.16.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,301 Found link https://files.pythonhosted.org/packages/d5/a5/e340288e5ced0d427ecac1e87244b8091017de6a8d0dad21868ba06f6c75/orfdata-0.16.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.16.0 2026-10-17T03:59:53,302 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/1f/44/a979b2a60e46ff76f75c94637dfa11fb1806b9e63f9061f81b7974b09e8b/orfdata-0.17.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,303 Found link 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(requires-python:>=3.9) 2026-10-17T03:59:53,306 Found link https://files.pythonhosted.org/packages/d5/0d/835002a9b91ccabfbeb8aad823e362c502fb242820670a871c55aa2689da/orfdata-0.27.1.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.27.1 2026-10-17T03:59:53,306 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/b5/64/dff78315fbbccdea953bdf56e7741448b8bd5a764c61d07684d22f680ef9/orfdata-0.28.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,307 Found link https://files.pythonhosted.org/packages/1c/14/b478e75b9a2ad0fdf37881717caf80eb6dd3cb9ac3d90f3af7c804adb852/orfdata-0.28.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.28.0 2026-10-17T03:59:53,308 Skipping link: No binaries permitted for orfdata: 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https://www.piwheels.org/simple/orfdata/orfdata-0.15.0-py3-none-any.whl#sha256=a9113b3c811c14080fccc262fc7d3129428b0c5e493aacd5ff2a9c564aefbd5c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,545 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.14.0-py3-none-any.whl#sha256=68a02237b184e2eb712854f94f1a3e121e1cffe3c76378bbc33a0ee2049c1f89 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,545 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.13.0-py3-none-any.whl#sha256=708d789cb7f01da911c1fcb53fc613a51d08978dba516bfcf4facd40875c8520 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,546 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.12.0-py3-none-any.whl#sha256=3e780f6c92764092934f43d9e3bc69497fef3e5ed3b471e2dd9efb7468471787 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,546 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.11.0-py3-none-any.whl#sha256=ec7e6439aa6f450087fa88dd9e2e23d3a5ef83a772401622b95d910a4a1f029c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,547 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.10.0-py3-none-any.whl#sha256=65db21afdb89bc160b14dba56ee80f94a39ea9c448105c0d5255a1460cb50256 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,548 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.9.0-py3-none-any.whl#sha256=2830e8180c3401f1e765abeab2337101a052975afe794ac64c4824ac87b56f16 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,548 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.8.0-py3-none-any.whl#sha256=f3179a493af31d4bfa6ddbba319a30631c3d3e44a0fad13631528b545e3f80cb (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,549 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.7.0-py3-none-any.whl#sha256=9e751a35c69a35be7da570127ffc072ffc3c4ed9b5c2fd0005229d8e7a77c704 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,549 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.6.0-py3-none-any.whl#sha256=b3d9297d24bbed1ee31bdea06ffa1384d9b682a77f0f67b16f7daa70aeb00fa0 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,550 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.5.0-py3-none-any.whl#sha256=6f4b83f7f24964798138035d12bb887aa0f8ba522099a27d40dbe20e9231bc76 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,551 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.4.0-py3-none-any.whl#sha256=20e08e8c304140d95d4d7228e30c37a01119b4eb0a558f38868f65fa956c91d3 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,551 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.3.0-py3-none-any.whl#sha256=50842b5d601681d2d383b9606e337fb2b83af7c2bbbd6979e61f543c1a1651bd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,552 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.2.0-py3-none-any.whl#sha256=a889faefe720028ad527c5374560c0105d7d523a59d934e2df48a81a4d3afaf9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,552 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T03:59:53,553 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-10-17T03:59:53,553 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-10-17T03:59:53,575 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-10-17T03:59:53,593 Collecting orfdata==0.31.0 2026-10-17T03:59:53,596 Created temporary directory: /tmp/pip-unpack-3p9n_9dn 2026-10-17T03:59:53,754 Downloading orfdata-0.31.0.tar.gz (3.1 MB) 2026-10-17T03:59:54,703 Added orfdata==0.31.0 from https://files.pythonhosted.org/packages/0b/6c/b2f2e748ff6c0f38a98d12b1e3223cb892332a90287506a4bb79c03653e0/orfdata-0.31.0.tar.gz to build tracker '/tmp/pip-build-tracker-b8neg_0o' 2026-10-17T03:59:54,708 Created temporary directory: /tmp/pip-build-env-50ackgqf 2026-10-17T03:59:54,712 Installing build dependencies: started 2026-10-17T03:59:54,714 Running command pip subprocess to install build dependencies 2026-10-17T03:59:55,833 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-10-17T03:59:56,242 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-17T03:59:56,265 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-17T03:59:58,057 Collecting setuptools>=77 2026-10-17T03:59:58,058 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-10-17T03:59:58,072 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-10-17T03:59:58,308 Collecting wheel 2026-10-17T03:59:58,309 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-10-17T03:59:58,322 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-10-17T03:59:58,506 Collecting packaging>=24.0 2026-10-17T03:59:58,507 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-10-17T03:59:58,522 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-10-17T03:59:58,713 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-17T03:59:58,735 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-17T03:59:58,805 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-17T03:59:58,838 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-17T03:59:58,866 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-17T03:59:58,951 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-17T04:00:01,745 Installing collected packages: setuptools, packaging, wheel 2026-10-17T04:00:04,691 Creating /tmp/pip-build-env-50ackgqf/overlay/local/bin 2026-10-17T04:00:04,693 changing mode of /tmp/pip-build-env-50ackgqf/overlay/local/bin/wheel to 755 2026-10-17T04:00:04,716 Successfully installed packaging-26.3 setuptools-84.0.0 wheel-0.48.0 2026-10-17T04:00:05,001 Installing build dependencies: finished with status 'done' 2026-10-17T04:00:05,008 Getting requirements to build wheel: started 2026-10-17T04:00:05,009 Running command Getting requirements to build wheel 2026-10-17T04:00:05,788 running egg_info 2026-10-17T04:00:05,794 writing orfdata.egg-info/PKG-INFO 2026-10-17T04:00:05,802 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-17T04:00:05,805 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-17T04:00:05,809 writing requirements to orfdata.egg-info/requires.txt 2026-10-17T04:00:05,810 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-17T04:00:05,843 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:00:05,858 reading manifest template 'MANIFEST.in' 2026-10-17T04:00:06,352 adding license file 'LICENSE' 2026-10-17T04:00:06,365 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:00:06,465 Getting requirements to build wheel: finished with status 'done' 2026-10-17T04:00:06,469 Created temporary directory: /tmp/pip-modern-metadata-3jeo287b 2026-10-17T04:00:06,472 Preparing metadata (pyproject.toml): started 2026-10-17T04:00:06,473 Running command Preparing metadata (pyproject.toml) 2026-10-17T04:00:07,165 running dist_info 2026-10-17T04:00:07,175 creating /tmp/pip-modern-metadata-3jeo287b/orfdata.egg-info 2026-10-17T04:00:07,176 writing /tmp/pip-modern-metadata-3jeo287b/orfdata.egg-info/PKG-INFO 2026-10-17T04:00:07,185 writing dependency_links to /tmp/pip-modern-metadata-3jeo287b/orfdata.egg-info/dependency_links.txt 2026-10-17T04:00:07,186 writing entry points to /tmp/pip-modern-metadata-3jeo287b/orfdata.egg-info/entry_points.txt 2026-10-17T04:00:07,191 writing requirements to /tmp/pip-modern-metadata-3jeo287b/orfdata.egg-info/requires.txt 2026-10-17T04:00:07,192 writing top-level names to /tmp/pip-modern-metadata-3jeo287b/orfdata.egg-info/top_level.txt 2026-10-17T04:00:07,194 writing manifest file '/tmp/pip-modern-metadata-3jeo287b/orfdata.egg-info/SOURCES.txt' 2026-10-17T04:00:07,222 reading manifest file '/tmp/pip-modern-metadata-3jeo287b/orfdata.egg-info/SOURCES.txt' 2026-10-17T04:00:07,224 reading manifest template 'MANIFEST.in' 2026-10-17T04:00:07,722 adding license file 'LICENSE' 2026-10-17T04:00:07,733 writing manifest file '/tmp/pip-modern-metadata-3jeo287b/orfdata.egg-info/SOURCES.txt' 2026-10-17T04:00:07,734 creating '/tmp/pip-modern-metadata-3jeo287b/orfdata-0.31.0.dist-info' 2026-10-17T04:00:07,863 Preparing metadata (pyproject.toml): finished with status 'done' 2026-10-17T04:00:07,868 Source in /tmp/pip-wheel-cdd0h69f/orfdata_29da95e3a2a945058d6671ce1df25fc4 has version 0.31.0, which satisfies requirement orfdata==0.31.0 from https://files.pythonhosted.org/packages/0b/6c/b2f2e748ff6c0f38a98d12b1e3223cb892332a90287506a4bb79c03653e0/orfdata-0.31.0.tar.gz 2026-10-17T04:00:07,870 Removed orfdata==0.31.0 from https://files.pythonhosted.org/packages/0b/6c/b2f2e748ff6c0f38a98d12b1e3223cb892332a90287506a4bb79c03653e0/orfdata-0.31.0.tar.gz from build tracker '/tmp/pip-build-tracker-b8neg_0o' 2026-10-17T04:00:07,876 Created temporary directory: /tmp/pip-unpack-wgt0m8pw 2026-10-17T04:00:07,876 Building wheels for collected packages: orfdata 2026-10-17T04:00:07,881 Created temporary directory: /tmp/pip-wheel-w2ec63by 2026-10-17T04:00:07,882 Destination directory: /tmp/pip-wheel-w2ec63by 2026-10-17T04:00:07,884 Building wheel for orfdata (pyproject.toml): started 2026-10-17T04:00:07,886 Running command Building wheel for orfdata (pyproject.toml) 2026-10-17T04:00:08,541 running bdist_wheel 2026-10-17T04:00:08,559 running build 2026-10-17T04:00:08,559 running build_py 2026-10-17T04:00:08,566 creating build/lib/orfdata 2026-10-17T04:00:08,569 copying orfdata/search_reference.py -> build/lib/orfdata 2026-10-17T04:00:08,571 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-10-17T04:00:08,574 copying orfdata/catalog.py -> build/lib/orfdata 2026-10-17T04:00:08,577 copying orfdata/cli.py -> build/lib/orfdata 2026-10-17T04:00:08,580 copying orfdata/catalogs.py -> build/lib/orfdata 2026-10-17T04:00:08,582 copying orfdata/proteome.py -> build/lib/orfdata 2026-10-17T04:00:08,586 copying orfdata/sequence.py -> build/lib/orfdata 2026-10-17T04:00:08,589 copying orfdata/liftover.py -> build/lib/orfdata 2026-10-17T04:00:08,592 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-10-17T04:00:08,594 copying orfdata/install.py -> build/lib/orfdata 2026-10-17T04:00:08,597 copying orfdata/measurements.py -> build/lib/orfdata 2026-10-17T04:00:08,599 copying orfdata/_structure.py -> build/lib/orfdata 2026-10-17T04:00:08,602 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-10-17T04:00:08,604 copying orfdata/datasets.py -> build/lib/orfdata 2026-10-17T04:00:08,607 copying orfdata/version.py -> build/lib/orfdata 2026-10-17T04:00:08,609 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-10-17T04:00:08,611 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-10-17T04:00:08,614 copying orfdata/reference.py -> build/lib/orfdata 2026-10-17T04:00:08,617 copying orfdata/genomes.py -> build/lib/orfdata 2026-10-17T04:00:08,619 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-10-17T04:00:08,622 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-10-17T04:00:08,624 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-10-17T04:00:08,627 copying orfdata/refseq.py -> build/lib/orfdata 2026-10-17T04:00:08,629 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-10-17T04:00:08,632 copying orfdata/rna.py -> build/lib/orfdata 2026-10-17T04:00:08,634 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-10-17T04:00:08,636 copying orfdata/viral.py -> build/lib/orfdata 2026-10-17T04:00:08,639 copying orfdata/dataset.py -> build/lib/orfdata 2026-10-17T04:00:08,642 copying orfdata/evidence.py -> build/lib/orfdata 2026-10-17T04:00:08,645 copying orfdata/build.py -> build/lib/orfdata 2026-10-17T04:00:08,648 copying orfdata/__init__.py -> build/lib/orfdata 2026-10-17T04:00:08,650 copying orfdata/model.py -> build/lib/orfdata 2026-10-17T04:00:08,654 copying orfdata/pairing.py -> build/lib/orfdata 2026-10-17T04:00:08,657 creating build/lib/orfdata/sources 2026-10-17T04:00:08,658 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-10-17T04:00:08,661 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-10-17T04:00:08,663 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-10-17T04:00:08,665 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-10-17T04:00:08,668 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-10-17T04:00:08,671 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-10-17T04:00:08,673 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-10-17T04:00:08,676 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-10-17T04:00:08,679 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-10-17T04:00:08,682 running egg_info 2026-10-17T04:00:08,692 writing orfdata.egg-info/PKG-INFO 2026-10-17T04:00:08,699 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-17T04:00:08,701 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-17T04:00:08,705 writing requirements to orfdata.egg-info/requires.txt 2026-10-17T04:00:08,706 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-17T04:00:08,726 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:00:08,741 reading manifest template 'MANIFEST.in' 2026-10-17T04:00:09,280 adding license file 'LICENSE' 2026-10-17T04:00:09,300 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:00:09,319 creating build/lib/orfdata/data/uorf-evidence 2026-10-17T04:00:09,321 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:00:09,324 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:00:09,327 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:00:09,330 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:00:09,346 creating build/lib/orfdata/data/orf-evidence 2026-10-17T04:00:09,347 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:00:09,350 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:00:09,352 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:00:09,355 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:00:09,375 creating build/lib/orfdata/data/ires 2026-10-17T04:00:09,376 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-10-17T04:00:09,379 creating build/lib/orfdata/data/viral 2026-10-17T04:00:09,380 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-10-17T04:00:09,383 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-10-17T04:00:09,385 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-10-17T04:00:09,390 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-10-17T04:00:09,393 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-10-17T04:00:09,395 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-10-17T04:00:09,417 installing to build/bdist.linux-armv7l/wheel 2026-10-17T04:00:09,418 running install 2026-10-17T04:00:09,440 running install_lib 2026-10-17T04:00:09,445 creating build/bdist.linux-armv7l/wheel 2026-10-17T04:00:09,449 creating build/bdist.linux-armv7l/wheel/orfdata 2026-10-17T04:00:09,450 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,453 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,455 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,459 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,462 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,465 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,468 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,471 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,474 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,477 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,479 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,482 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,485 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,487 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,490 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,492 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,494 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,497 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,499 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,502 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,504 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,507 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,510 copying build/lib/orfdata/refseq.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,513 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-10-17T04:00:09,514 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:00:09,517 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:00:09,520 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:00:09,523 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:00:09,526 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:00:09,528 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:00:09,531 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:00:09,534 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:00:09,536 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:00:09,538 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,540 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,543 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,545 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,547 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,550 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,553 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,556 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,559 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,562 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:00:09,566 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-10-17T04:00:09,568 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-10-17T04:00:09,569 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:00:09,572 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:00:09,574 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:00:09,576 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:00:09,597 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:00:09,601 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:00:09,605 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-10-17T04:00:09,606 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-10-17T04:00:09,610 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-10-17T04:00:09,611 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-17T04:00:09,614 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-17T04:00:09,617 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:00:09,621 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-10-17T04:00:09,622 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:00:09,625 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:00:09,628 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:00:09,631 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:00:09,645 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:00:09,647 running install_egg_info 2026-10-17T04:00:09,653 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.31.0-py3.11.egg-info 2026-10-17T04:00:09,667 running install_scripts 2026-10-17T04:00:09,684 creating build/bdist.linux-armv7l/wheel/orfdata-0.31.0.dist-info/WHEEL 2026-10-17T04:00:09,687 creating '/tmp/pip-wheel-w2ec63by/.tmp-ar3684vr/orfdata-0.31.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-10-17T04:00:09,691 adding 'orfdata/__init__.py' 2026-10-17T04:00:09,692 adding 'orfdata/_pinned_genome.py' 2026-10-17T04:00:09,694 adding 'orfdata/_structure.py' 2026-10-17T04:00:09,698 adding 'orfdata/build.py' 2026-10-17T04:00:09,707 adding 'orfdata/catalog.py' 2026-10-17T04:00:09,710 adding 'orfdata/catalog_cli.py' 2026-10-17T04:00:09,712 adding 'orfdata/catalog_manifest.py' 2026-10-17T04:00:09,714 adding 'orfdata/catalogs.py' 2026-10-17T04:00:09,717 adding 'orfdata/cli.py' 2026-10-17T04:00:09,722 adding 'orfdata/dataset.py' 2026-10-17T04:00:09,724 adding 'orfdata/dataset_cli.py' 2026-10-17T04:00:09,727 adding 'orfdata/datasets.py' 2026-10-17T04:00:09,729 adding 'orfdata/evidence.py' 2026-10-17T04:00:09,731 adding 'orfdata/evidence_summary.py' 2026-10-17T04:00:09,733 adding 'orfdata/genomes.py' 2026-10-17T04:00:09,735 adding 'orfdata/genomes_cli.py' 2026-10-17T04:00:09,737 adding 'orfdata/initiation_context.py' 2026-10-17T04:00:09,739 adding 'orfdata/install.py' 2026-10-17T04:00:09,742 adding 'orfdata/liftover.py' 2026-10-17T04:00:09,744 adding 'orfdata/liftover_cli.py' 2026-10-17T04:00:09,747 adding 'orfdata/measurements.py' 2026-10-17T04:00:09,752 adding 'orfdata/model.py' 2026-10-17T04:00:09,755 adding 'orfdata/pairing.py' 2026-10-17T04:00:09,762 adding 'orfdata/proteome.py' 2026-10-17T04:00:09,764 adding 'orfdata/proteome_cli.py' 2026-10-17T04:00:09,767 adding 'orfdata/reference.py' 2026-10-17T04:00:09,769 adding 'orfdata/reference_mapping.py' 2026-10-17T04:00:09,771 adding 'orfdata/refseq.py' 2026-10-17T04:00:09,773 adding 'orfdata/rna.py' 2026-10-17T04:00:09,776 adding 'orfdata/search_reference.py' 2026-10-17T04:00:09,778 adding 'orfdata/sequence.py' 2026-10-17T04:00:09,779 adding 'orfdata/version.py' 2026-10-17T04:00:09,781 adding 'orfdata/viral.py' 2026-10-17T04:00:09,785 adding 'orfdata/data/catalogs.json' 2026-10-17T04:00:09,787 adding 'orfdata/data/chains.json' 2026-10-17T04:00:09,792 adding 'orfdata/data/datasets.json' 2026-10-17T04:00:09,795 adding 'orfdata/data/genomes.json' 2026-10-17T04:00:09,798 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-10-17T04:00:09,800 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-10-17T04:00:09,802 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-10-17T04:00:09,956 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-10-17T04:00:09,966 adding 'orfdata/data/orf-evidence/manifest.json' 2026-10-17T04:00:09,968 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-10-17T04:00:09,970 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-10-17T04:00:10,050 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-10-17T04:00:10,056 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-10-17T04:00:10,058 adding 'orfdata/data/viral/NOTICE.md' 2026-10-17T04:00:10,060 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-10-17T04:00:10,062 adding 'orfdata/sources/__init__.py' 2026-10-17T04:00:10,065 adding 'orfdata/sources/copy.py' 2026-10-17T04:00:10,068 adding 'orfdata/sources/ingolia.py' 2026-10-17T04:00:10,070 adding 'orfdata/sources/ncorf_mammals.py' 2026-10-17T04:00:10,072 adding 'orfdata/sources/openprot.py' 2026-10-17T04:00:10,075 adding 'orfdata/sources/pfizer.py' 2026-10-17T04:00:10,077 adding 'orfdata/sources/pfizer_rna.py' 2026-10-17T04:00:10,080 adding 'orfdata/sources/riborf.py' 2026-10-17T04:00:10,083 adding 'orfdata/sources/wang.py' 2026-10-17T04:00:10,088 adding 'orfdata-0.31.0.dist-info/licenses/LICENSE' 2026-10-17T04:00:10,090 adding 'orfdata-0.31.0.dist-info/METADATA' 2026-10-17T04:00:10,092 adding 'orfdata-0.31.0.dist-info/WHEEL' 2026-10-17T04:00:10,093 adding 'orfdata-0.31.0.dist-info/entry_points.txt' 2026-10-17T04:00:10,094 adding 'orfdata-0.31.0.dist-info/top_level.txt' 2026-10-17T04:00:10,096 adding 'orfdata-0.31.0.dist-info/RECORD' 2026-10-17T04:00:10,131 removing build/bdist.linux-armv7l/wheel 2026-10-17T04:00:10,251 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-10-17T04:00:10,312 Created wheel for orfdata: filename=orfdata-0.31.0-py3-none-any.whl size=2086557 sha256=7598690474f6698ab3beecac966df858d1100dbd6fa083c47deac54041ecebfa 2026-10-17T04:00:10,313 Stored in directory: /tmp/pip-ephem-wheel-cache-ljkid86h/wheels/f7/5d/6c/9549261b3ecd00f3aa5a6d78936ec39821d1d4ce2a6f8b9772 2026-10-17T04:00:10,327 Successfully built orfdata 2026-10-17T04:00:10,392 Removed build tracker: '/tmp/pip-build-tracker-b8neg_0o'