2026-10-17T04:18:50,613 Created temporary directory: /tmp/pip-ephem-wheel-cache-grg79k1v 2026-10-17T04:18:50,615 Created temporary directory: /tmp/pip-build-tracker-lyp0hbib 2026-10-17T04:18:50,615 Initialized build tracking at /tmp/pip-build-tracker-lyp0hbib 2026-10-17T04:18:50,616 Created build tracker: /tmp/pip-build-tracker-lyp0hbib 2026-10-17T04:18:50,616 Entered build tracker: /tmp/pip-build-tracker-lyp0hbib 2026-10-17T04:18:50,617 Created temporary directory: /tmp/pip-wheel-yyhzkuq5 2026-10-17T04:18:50,620 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-17T04:18:50,622 Created temporary directory: /tmp/pip-ephem-wheel-cache-vorjcfy2 2026-10-17T04:18:50,643 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-17T04:18:50,647 2 location(s) to search for versions of orfdata: 2026-10-17T04:18:50,647 * https://pypi.org/simple/orfdata/ 2026-10-17T04:18:50,647 * https://www.piwheels.org/simple/orfdata/ 2026-10-17T04:18:50,648 Fetching project page and analyzing links: https://pypi.org/simple/orfdata/ 2026-10-17T04:18:50,648 Getting page https://pypi.org/simple/orfdata/ 2026-10-17T04:18:50,650 Found index url https://pypi.org/simple 2026-10-17T04:18:50,885 Fetched page https://pypi.org/simple/orfdata/ as application/vnd.pypi.simple.v1+json 2026-10-17T04:18:50,896 Skipping link: No binaries permitted for orfdata: 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link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/f2/f3/6f85510de22a7a5dccf0a3e3e785945061e24c89c512549b507976a4f945/orfdata-0.3.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:50,900 Found link https://files.pythonhosted.org/packages/f3/e3/56626b35edc8e86411519c54f4e2553ecb90a9efb2b59d3a05b61edcac4a/orfdata-0.3.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.3.0 2026-10-17T04:18:50,901 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/e8/a2/abf9bef09ea48c956b7d31ce0bd59432570f36a09e4516781c11a8eaf6e2/orfdata-0.4.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:50,902 Found link https://files.pythonhosted.org/packages/18/47/1adf568341c7c5996f536c5322d1be0b173b65e86ac3d0962b891463502d/orfdata-0.4.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 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(requires-python:>=3.9) 2026-10-17T04:18:50,911 Found link https://files.pythonhosted.org/packages/f5/74/4cbe4ccc8fb0eef0adad8cfe9786d1906d01d8e3877a34d8d28024d75b75/orfdata-0.10.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.10.0 2026-10-17T04:18:50,912 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/c4/67/fb39a8a3fb26718a81aac12b32a819cd2bc35a7f289d45066b3585776ca4/orfdata-0.11.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:50,913 Found link https://files.pythonhosted.org/packages/b5/7b/8b6ef20f7898344ba082c29ffdec1b992bac28e9d28ac50c60fe8140e45c/orfdata-0.11.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.11.0 2026-10-17T04:18:50,914 Skipping link: No binaries permitted for orfdata: 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(requires-python:>=3.9), version: 0.15.0 2026-10-17T04:18:50,920 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/fe/30/09122efb9da979b3a0c70caea85feed7127b64fe3b47d826b081a920b17c/orfdata-0.16.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:50,920 Found link https://files.pythonhosted.org/packages/d5/a5/e340288e5ced0d427ecac1e87244b8091017de6a8d0dad21868ba06f6c75/orfdata-0.16.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.16.0 2026-10-17T04:18:50,921 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/1f/44/a979b2a60e46ff76f75c94637dfa11fb1806b9e63f9061f81b7974b09e8b/orfdata-0.17.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:50,922 Found link https://files.pythonhosted.org/packages/c6/5a/93b82bbeb0f55f226c811bd3e4b40fe127243ba331dcc2cacb36f7b881d2/orfdata-0.17.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.17.0 2026-10-17T04:18:50,923 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/d1/35/669a48f8efd545b73d22ff7332fabc637fa972f24715bc9b8ed40d9a687d/orfdata-0.18.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:50,923 Found link https://files.pythonhosted.org/packages/50/59/239dd0d5e0668dfe853b75c78ae90bb101541639aa495584b3928903f802/orfdata-0.18.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.18.0 2026-10-17T04:18:50,924 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/2b/39/0937ca61ea0e57aaaed5a30da2aff70960c10cb8c7c8da55a6b4e791a732/orfdata-0.27.1-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:50,925 Found link https://files.pythonhosted.org/packages/d5/0d/835002a9b91ccabfbeb8aad823e362c502fb242820670a871c55aa2689da/orfdata-0.27.1.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.27.1 2026-10-17T04:18:50,926 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/b5/64/dff78315fbbccdea953bdf56e7741448b8bd5a764c61d07684d22f680ef9/orfdata-0.28.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:50,927 Found link https://files.pythonhosted.org/packages/1c/14/b478e75b9a2ad0fdf37881717caf80eb6dd3cb9ac3d90f3af7c804adb852/orfdata-0.28.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.28.0 2026-10-17T04:18:50,927 Skipping link: No binaries permitted for orfdata: 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https://www.piwheels.org/simple/orfdata/orfdata-0.27.1-py3-none-any.whl#sha256=3a0f09acc954353ba946a2543f2c9f5e9d6a396c1ab5c116b2c56be2e205b65b (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,142 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.18.0-py3-none-any.whl#sha256=95a47ff1342f25a0b62b1f77b884f4184a7fe9ccdd28e798a454ee5c76147b33 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,142 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.17.0-py3-none-any.whl#sha256=f19b35c9b0f8a7e3602cee1ea4f0794f3d12d7ae073890e7e271b1d1bfceec92 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,142 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.16.0-py3-none-any.whl#sha256=8d567288d7f03b2a8a346be246bbb13aa250c61b55b89ae1e493dbf130c9b2cc (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,143 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.15.0-py3-none-any.whl#sha256=a9113b3c811c14080fccc262fc7d3129428b0c5e493aacd5ff2a9c564aefbd5c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,143 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.14.0-py3-none-any.whl#sha256=68a02237b184e2eb712854f94f1a3e121e1cffe3c76378bbc33a0ee2049c1f89 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,144 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.13.0-py3-none-any.whl#sha256=708d789cb7f01da911c1fcb53fc613a51d08978dba516bfcf4facd40875c8520 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,144 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.12.0-py3-none-any.whl#sha256=3e780f6c92764092934f43d9e3bc69497fef3e5ed3b471e2dd9efb7468471787 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,145 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.11.0-py3-none-any.whl#sha256=ec7e6439aa6f450087fa88dd9e2e23d3a5ef83a772401622b95d910a4a1f029c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,146 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.10.0-py3-none-any.whl#sha256=65db21afdb89bc160b14dba56ee80f94a39ea9c448105c0d5255a1460cb50256 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,146 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.9.0-py3-none-any.whl#sha256=2830e8180c3401f1e765abeab2337101a052975afe794ac64c4824ac87b56f16 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,147 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.8.0-py3-none-any.whl#sha256=f3179a493af31d4bfa6ddbba319a30631c3d3e44a0fad13631528b545e3f80cb (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,147 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.7.0-py3-none-any.whl#sha256=9e751a35c69a35be7da570127ffc072ffc3c4ed9b5c2fd0005229d8e7a77c704 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,148 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.6.0-py3-none-any.whl#sha256=b3d9297d24bbed1ee31bdea06ffa1384d9b682a77f0f67b16f7daa70aeb00fa0 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,148 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.5.0-py3-none-any.whl#sha256=6f4b83f7f24964798138035d12bb887aa0f8ba522099a27d40dbe20e9231bc76 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,149 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.4.0-py3-none-any.whl#sha256=20e08e8c304140d95d4d7228e30c37a01119b4eb0a558f38868f65fa956c91d3 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,149 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.3.0-py3-none-any.whl#sha256=50842b5d601681d2d383b9606e337fb2b83af7c2bbbd6979e61f543c1a1651bd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,150 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.2.0-py3-none-any.whl#sha256=a889faefe720028ad527c5374560c0105d7d523a59d934e2df48a81a4d3afaf9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,150 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:18:51,151 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-10-17T04:18:51,151 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-10-17T04:18:51,173 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-10-17T04:18:51,191 Collecting orfdata==0.32.0 2026-10-17T04:18:51,194 Created temporary directory: /tmp/pip-unpack-kb0sa2iv 2026-10-17T04:18:51,347 Downloading orfdata-0.32.0.tar.gz (3.1 MB) 2026-10-17T04:18:52,290 Added orfdata==0.32.0 from https://files.pythonhosted.org/packages/67/0b/5e1cfe894b1ffe3151c090e26b8a35ba70d9a76a4a88e72174cd0084d4d5/orfdata-0.32.0.tar.gz to build tracker '/tmp/pip-build-tracker-lyp0hbib' 2026-10-17T04:18:52,296 Created temporary directory: /tmp/pip-build-env-xveexktg 2026-10-17T04:18:52,300 Installing build dependencies: started 2026-10-17T04:18:52,301 Running command pip subprocess to install build dependencies 2026-10-17T04:18:53,422 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-10-17T04:18:53,872 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-17T04:18:53,895 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-17T04:18:55,671 Collecting setuptools>=77 2026-10-17T04:18:55,672 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-10-17T04:18:55,686 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-10-17T04:18:55,922 Collecting wheel 2026-10-17T04:18:55,923 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-10-17T04:18:55,935 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-10-17T04:18:56,143 Collecting packaging>=24.0 2026-10-17T04:18:56,144 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-10-17T04:18:56,159 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-10-17T04:18:56,352 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-17T04:18:56,373 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-17T04:18:56,468 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-17T04:18:56,510 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-17T04:18:56,538 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-17T04:18:56,625 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-17T04:18:59,417 Installing collected packages: setuptools, packaging, wheel 2026-10-17T04:19:02,104 Creating /tmp/pip-build-env-xveexktg/overlay/local/bin 2026-10-17T04:19:02,106 changing mode of /tmp/pip-build-env-xveexktg/overlay/local/bin/wheel to 755 2026-10-17T04:19:02,125 Successfully installed packaging-26.3 setuptools-84.0.0 wheel-0.48.0 2026-10-17T04:19:02,430 Installing build dependencies: finished with status 'done' 2026-10-17T04:19:02,436 Getting requirements to build wheel: started 2026-10-17T04:19:02,437 Running command Getting requirements to build wheel 2026-10-17T04:19:03,144 running egg_info 2026-10-17T04:19:03,150 writing orfdata.egg-info/PKG-INFO 2026-10-17T04:19:03,157 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-17T04:19:03,159 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-17T04:19:03,164 writing requirements to orfdata.egg-info/requires.txt 2026-10-17T04:19:03,165 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-17T04:19:03,196 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:19:03,211 reading manifest template 'MANIFEST.in' 2026-10-17T04:19:03,637 adding license file 'LICENSE' 2026-10-17T04:19:03,651 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:19:03,750 Getting requirements to build wheel: finished with status 'done' 2026-10-17T04:19:03,754 Created temporary directory: /tmp/pip-modern-metadata-ioub5byb 2026-10-17T04:19:03,757 Preparing metadata (pyproject.toml): started 2026-10-17T04:19:03,758 Running command Preparing metadata (pyproject.toml) 2026-10-17T04:19:04,411 running dist_info 2026-10-17T04:19:04,421 creating /tmp/pip-modern-metadata-ioub5byb/orfdata.egg-info 2026-10-17T04:19:04,422 writing /tmp/pip-modern-metadata-ioub5byb/orfdata.egg-info/PKG-INFO 2026-10-17T04:19:04,429 writing dependency_links to /tmp/pip-modern-metadata-ioub5byb/orfdata.egg-info/dependency_links.txt 2026-10-17T04:19:04,431 writing entry points to /tmp/pip-modern-metadata-ioub5byb/orfdata.egg-info/entry_points.txt 2026-10-17T04:19:04,435 writing requirements to /tmp/pip-modern-metadata-ioub5byb/orfdata.egg-info/requires.txt 2026-10-17T04:19:04,437 writing top-level names to /tmp/pip-modern-metadata-ioub5byb/orfdata.egg-info/top_level.txt 2026-10-17T04:19:04,438 writing manifest file '/tmp/pip-modern-metadata-ioub5byb/orfdata.egg-info/SOURCES.txt' 2026-10-17T04:19:04,465 reading manifest file '/tmp/pip-modern-metadata-ioub5byb/orfdata.egg-info/SOURCES.txt' 2026-10-17T04:19:04,467 reading manifest template 'MANIFEST.in' 2026-10-17T04:19:04,907 adding license file 'LICENSE' 2026-10-17T04:19:04,917 writing manifest file '/tmp/pip-modern-metadata-ioub5byb/orfdata.egg-info/SOURCES.txt' 2026-10-17T04:19:04,919 creating '/tmp/pip-modern-metadata-ioub5byb/orfdata-0.32.0.dist-info' 2026-10-17T04:19:05,047 Preparing metadata (pyproject.toml): finished with status 'done' 2026-10-17T04:19:05,051 Source in /tmp/pip-wheel-yyhzkuq5/orfdata_1cf10c3185c344138a2a314fc411289c has version 0.32.0, which satisfies requirement orfdata==0.32.0 from https://files.pythonhosted.org/packages/67/0b/5e1cfe894b1ffe3151c090e26b8a35ba70d9a76a4a88e72174cd0084d4d5/orfdata-0.32.0.tar.gz 2026-10-17T04:19:05,053 Removed orfdata==0.32.0 from https://files.pythonhosted.org/packages/67/0b/5e1cfe894b1ffe3151c090e26b8a35ba70d9a76a4a88e72174cd0084d4d5/orfdata-0.32.0.tar.gz from build tracker '/tmp/pip-build-tracker-lyp0hbib' 2026-10-17T04:19:05,059 Created temporary directory: /tmp/pip-unpack-396xc18g 2026-10-17T04:19:05,059 Building wheels for collected packages: orfdata 2026-10-17T04:19:05,064 Created temporary directory: /tmp/pip-wheel-yld40xvd 2026-10-17T04:19:05,065 Destination directory: /tmp/pip-wheel-yld40xvd 2026-10-17T04:19:05,067 Building wheel for orfdata (pyproject.toml): started 2026-10-17T04:19:05,069 Running command Building wheel for orfdata (pyproject.toml) 2026-10-17T04:19:05,721 running bdist_wheel 2026-10-17T04:19:05,739 running build 2026-10-17T04:19:05,740 running build_py 2026-10-17T04:19:05,747 creating build/lib/orfdata 2026-10-17T04:19:05,749 copying orfdata/catalogs.py -> build/lib/orfdata 2026-10-17T04:19:05,752 copying orfdata/_structure.py -> build/lib/orfdata 2026-10-17T04:19:05,754 copying orfdata/measurements.py -> build/lib/orfdata 2026-10-17T04:19:05,757 copying orfdata/proteome.py -> build/lib/orfdata 2026-10-17T04:19:05,760 copying orfdata/build.py -> build/lib/orfdata 2026-10-17T04:19:05,763 copying orfdata/install.py -> build/lib/orfdata 2026-10-17T04:19:05,765 copying orfdata/genomes.py -> build/lib/orfdata 2026-10-17T04:19:05,767 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-10-17T04:19:05,769 copying orfdata/version.py -> build/lib/orfdata 2026-10-17T04:19:05,771 copying orfdata/catalog.py -> build/lib/orfdata 2026-10-17T04:19:05,774 copying orfdata/pairing.py -> build/lib/orfdata 2026-10-17T04:19:05,777 copying orfdata/evidence.py -> build/lib/orfdata 2026-10-17T04:19:05,780 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-10-17T04:19:05,783 copying orfdata/liftover.py -> build/lib/orfdata 2026-10-17T04:19:05,785 copying orfdata/__init__.py -> build/lib/orfdata 2026-10-17T04:19:05,787 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-10-17T04:19:05,789 copying orfdata/cli.py -> build/lib/orfdata 2026-10-17T04:19:05,792 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-10-17T04:19:05,794 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-10-17T04:19:05,796 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-10-17T04:19:05,798 copying orfdata/search_reference.py -> build/lib/orfdata 2026-10-17T04:19:05,801 copying orfdata/rna.py -> build/lib/orfdata 2026-10-17T04:19:05,804 copying orfdata/sequence.py -> build/lib/orfdata 2026-10-17T04:19:05,806 copying orfdata/viral.py -> build/lib/orfdata 2026-10-17T04:19:05,808 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-10-17T04:19:05,811 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-10-17T04:19:05,813 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-10-17T04:19:05,816 copying orfdata/dataset.py -> build/lib/orfdata 2026-10-17T04:19:05,819 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-10-17T04:19:05,821 copying orfdata/model.py -> build/lib/orfdata 2026-10-17T04:19:05,825 copying orfdata/refseq.py -> build/lib/orfdata 2026-10-17T04:19:05,827 copying orfdata/reference.py -> build/lib/orfdata 2026-10-17T04:19:05,830 copying orfdata/datasets.py -> build/lib/orfdata 2026-10-17T04:19:05,834 creating build/lib/orfdata/sources 2026-10-17T04:19:05,835 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-10-17T04:19:05,838 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-10-17T04:19:05,841 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-10-17T04:19:05,843 copying orfdata/sources/peptideatlas.py -> build/lib/orfdata/sources 2026-10-17T04:19:05,846 copying orfdata/sources/kaabinejadian.py -> build/lib/orfdata/sources 2026-10-17T04:19:05,849 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-10-17T04:19:05,851 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-10-17T04:19:05,854 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-10-17T04:19:05,856 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-10-17T04:19:05,859 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-10-17T04:19:05,862 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-10-17T04:19:05,865 running egg_info 2026-10-17T04:19:05,875 writing orfdata.egg-info/PKG-INFO 2026-10-17T04:19:05,882 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-17T04:19:05,884 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-17T04:19:05,888 writing requirements to orfdata.egg-info/requires.txt 2026-10-17T04:19:05,889 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-17T04:19:05,909 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:19:05,924 reading manifest template 'MANIFEST.in' 2026-10-17T04:19:06,351 adding license file 'LICENSE' 2026-10-17T04:19:06,365 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:19:06,378 creating build/lib/orfdata/data/uorf-evidence 2026-10-17T04:19:06,379 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:19:06,382 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:19:06,399 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:19:06,401 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:19:06,403 creating build/lib/orfdata/data/orf-evidence 2026-10-17T04:19:06,404 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:19:06,407 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:19:06,431 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:19:06,433 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:19:06,435 creating build/lib/orfdata/data/ires 2026-10-17T04:19:06,436 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-10-17T04:19:06,439 creating build/lib/orfdata/data/viral 2026-10-17T04:19:06,440 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-10-17T04:19:06,443 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-10-17T04:19:06,445 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-10-17T04:19:06,450 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-10-17T04:19:06,453 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-10-17T04:19:06,456 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-10-17T04:19:06,475 installing to build/bdist.linux-armv7l/wheel 2026-10-17T04:19:06,476 running install 2026-10-17T04:19:06,498 running install_lib 2026-10-17T04:19:06,504 creating build/bdist.linux-armv7l/wheel 2026-10-17T04:19:06,506 creating build/bdist.linux-armv7l/wheel/orfdata 2026-10-17T04:19:06,507 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,510 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,513 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,515 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,519 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,521 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,524 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-10-17T04:19:06,525 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-10-17T04:19:06,527 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-17T04:19:06,529 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-17T04:19:06,531 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-10-17T04:19:06,532 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:19:06,534 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:19:06,546 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:19:06,548 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:19:06,550 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-10-17T04:19:06,551 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-10-17T04:19:06,553 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:19:06,558 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:19:06,560 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-10-17T04:19:06,561 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:19:06,563 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:19:06,584 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:19:06,586 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:19:06,588 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:19:06,590 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:19:06,592 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,595 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,597 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,599 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,602 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,605 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,607 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,609 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,611 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,613 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,615 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,618 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,620 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,623 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-10-17T04:19:06,624 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:19:06,627 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:19:06,629 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:19:06,631 copying build/lib/orfdata/sources/peptideatlas.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:19:06,633 copying build/lib/orfdata/sources/kaabinejadian.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:19:06,636 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:19:06,638 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:19:06,640 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:19:06,642 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:19:06,644 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:19:06,647 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:19:06,649 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,651 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,653 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,656 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,658 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,660 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,662 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,664 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,666 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,669 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,671 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,673 copying build/lib/orfdata/refseq.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,675 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,678 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:19:06,680 running install_egg_info 2026-10-17T04:19:06,685 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.32.0-py3.11.egg-info 2026-10-17T04:19:06,697 running install_scripts 2026-10-17T04:19:06,709 creating build/bdist.linux-armv7l/wheel/orfdata-0.32.0.dist-info/WHEEL 2026-10-17T04:19:06,712 creating '/tmp/pip-wheel-yld40xvd/.tmp-9uq3shj3/orfdata-0.32.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-10-17T04:19:06,715 adding 'orfdata/__init__.py' 2026-10-17T04:19:06,716 adding 'orfdata/_pinned_genome.py' 2026-10-17T04:19:06,718 adding 'orfdata/_structure.py' 2026-10-17T04:19:06,722 adding 'orfdata/build.py' 2026-10-17T04:19:06,731 adding 'orfdata/catalog.py' 2026-10-17T04:19:06,733 adding 'orfdata/catalog_cli.py' 2026-10-17T04:19:06,734 adding 'orfdata/catalog_manifest.py' 2026-10-17T04:19:06,737 adding 'orfdata/catalogs.py' 2026-10-17T04:19:06,739 adding 'orfdata/cli.py' 2026-10-17T04:19:06,744 adding 'orfdata/dataset.py' 2026-10-17T04:19:06,746 adding 'orfdata/dataset_cli.py' 2026-10-17T04:19:06,749 adding 'orfdata/datasets.py' 2026-10-17T04:19:06,752 adding 'orfdata/evidence.py' 2026-10-17T04:19:06,753 adding 'orfdata/evidence_summary.py' 2026-10-17T04:19:06,755 adding 'orfdata/genomes.py' 2026-10-17T04:19:06,756 adding 'orfdata/genomes_cli.py' 2026-10-17T04:19:06,758 adding 'orfdata/initiation_context.py' 2026-10-17T04:19:06,760 adding 'orfdata/install.py' 2026-10-17T04:19:06,763 adding 'orfdata/liftover.py' 2026-10-17T04:19:06,764 adding 'orfdata/liftover_cli.py' 2026-10-17T04:19:06,767 adding 'orfdata/measurements.py' 2026-10-17T04:19:06,772 adding 'orfdata/model.py' 2026-10-17T04:19:06,774 adding 'orfdata/pairing.py' 2026-10-17T04:19:06,781 adding 'orfdata/proteome.py' 2026-10-17T04:19:06,783 adding 'orfdata/proteome_cli.py' 2026-10-17T04:19:06,785 adding 'orfdata/reference.py' 2026-10-17T04:19:06,787 adding 'orfdata/reference_mapping.py' 2026-10-17T04:19:06,788 adding 'orfdata/refseq.py' 2026-10-17T04:19:06,791 adding 'orfdata/rna.py' 2026-10-17T04:19:06,793 adding 'orfdata/search_reference.py' 2026-10-17T04:19:06,794 adding 'orfdata/sequence.py' 2026-10-17T04:19:06,795 adding 'orfdata/version.py' 2026-10-17T04:19:06,797 adding 'orfdata/viral.py' 2026-10-17T04:19:06,800 adding 'orfdata/data/catalogs.json' 2026-10-17T04:19:06,802 adding 'orfdata/data/chains.json' 2026-10-17T04:19:06,809 adding 'orfdata/data/datasets.json' 2026-10-17T04:19:06,811 adding 'orfdata/data/genomes.json' 2026-10-17T04:19:06,815 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-10-17T04:19:06,816 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-10-17T04:19:06,818 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-10-17T04:19:06,971 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-10-17T04:19:06,981 adding 'orfdata/data/orf-evidence/manifest.json' 2026-10-17T04:19:06,982 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-10-17T04:19:06,984 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-10-17T04:19:07,064 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-10-17T04:19:07,069 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-10-17T04:19:07,071 adding 'orfdata/data/viral/NOTICE.md' 2026-10-17T04:19:07,072 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-10-17T04:19:07,074 adding 'orfdata/sources/__init__.py' 2026-10-17T04:19:07,077 adding 'orfdata/sources/copy.py' 2026-10-17T04:19:07,079 adding 'orfdata/sources/ingolia.py' 2026-10-17T04:19:07,082 adding 'orfdata/sources/kaabinejadian.py' 2026-10-17T04:19:07,083 adding 'orfdata/sources/ncorf_mammals.py' 2026-10-17T04:19:07,085 adding 'orfdata/sources/openprot.py' 2026-10-17T04:19:07,088 adding 'orfdata/sources/peptideatlas.py' 2026-10-17T04:19:07,090 adding 'orfdata/sources/pfizer.py' 2026-10-17T04:19:07,092 adding 'orfdata/sources/pfizer_rna.py' 2026-10-17T04:19:07,094 adding 'orfdata/sources/riborf.py' 2026-10-17T04:19:07,097 adding 'orfdata/sources/wang.py' 2026-10-17T04:19:07,101 adding 'orfdata-0.32.0.dist-info/licenses/LICENSE' 2026-10-17T04:19:07,103 adding 'orfdata-0.32.0.dist-info/METADATA' 2026-10-17T04:19:07,104 adding 'orfdata-0.32.0.dist-info/WHEEL' 2026-10-17T04:19:07,105 adding 'orfdata-0.32.0.dist-info/entry_points.txt' 2026-10-17T04:19:07,106 adding 'orfdata-0.32.0.dist-info/top_level.txt' 2026-10-17T04:19:07,108 adding 'orfdata-0.32.0.dist-info/RECORD' 2026-10-17T04:19:07,134 removing build/bdist.linux-armv7l/wheel 2026-10-17T04:19:07,250 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-10-17T04:19:07,297 Created wheel for orfdata: filename=orfdata-0.32.0-py3-none-any.whl size=2102787 sha256=9abb770a7b4c89a3296ff04854f1aace3ecf7c2e2cd4a0fffcb75839b309c8ad 2026-10-17T04:19:07,299 Stored in directory: /tmp/pip-ephem-wheel-cache-vorjcfy2/wheels/9f/2f/51/57091f2d07b963558075279db55758ed1445e205dfb06f36e7 2026-10-17T04:19:07,312 Successfully built orfdata 2026-10-17T04:19:07,364 Removed build tracker: '/tmp/pip-build-tracker-lyp0hbib'