2026-10-17T04:29:22,186 Created temporary directory: /tmp/pip-ephem-wheel-cache-jw4__39u 2026-10-17T04:29:22,188 Created temporary directory: /tmp/pip-build-tracker-bk3usdyx 2026-10-17T04:29:22,189 Initialized build tracking at /tmp/pip-build-tracker-bk3usdyx 2026-10-17T04:29:22,189 Created build tracker: /tmp/pip-build-tracker-bk3usdyx 2026-10-17T04:29:22,190 Entered build tracker: /tmp/pip-build-tracker-bk3usdyx 2026-10-17T04:29:22,191 Created temporary directory: /tmp/pip-wheel-_3q7a0kp 2026-10-17T04:29:22,194 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-17T04:29:22,196 Created temporary directory: /tmp/pip-ephem-wheel-cache-rmvlayk2 2026-10-17T04:29:22,218 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-17T04:29:22,222 2 location(s) to search for versions of orfdata: 2026-10-17T04:29:22,222 * https://pypi.org/simple/orfdata/ 2026-10-17T04:29:22,222 * https://www.piwheels.org/simple/orfdata/ 2026-10-17T04:29:22,223 Fetching project page and analyzing links: https://pypi.org/simple/orfdata/ 2026-10-17T04:29:22,224 Getting page https://pypi.org/simple/orfdata/ 2026-10-17T04:29:22,225 Found index url https://pypi.org/simple 2026-10-17T04:29:22,393 Fetched page https://pypi.org/simple/orfdata/ as application/vnd.pypi.simple.v1+json 2026-10-17T04:29:22,404 Skipping link: No binaries permitted for orfdata: 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(requires-python:>=3.9), version: 0.15.0 2026-10-17T04:29:22,428 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/fe/30/09122efb9da979b3a0c70caea85feed7127b64fe3b47d826b081a920b17c/orfdata-0.16.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,429 Found link https://files.pythonhosted.org/packages/d5/a5/e340288e5ced0d427ecac1e87244b8091017de6a8d0dad21868ba06f6c75/orfdata-0.16.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.16.0 2026-10-17T04:29:22,430 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/1f/44/a979b2a60e46ff76f75c94637dfa11fb1806b9e63f9061f81b7974b09e8b/orfdata-0.17.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,431 Found link 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(requires-python:>=3.9) 2026-10-17T04:29:22,434 Found link https://files.pythonhosted.org/packages/d5/0d/835002a9b91ccabfbeb8aad823e362c502fb242820670a871c55aa2689da/orfdata-0.27.1.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.27.1 2026-10-17T04:29:22,435 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/b5/64/dff78315fbbccdea953bdf56e7741448b8bd5a764c61d07684d22f680ef9/orfdata-0.28.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,436 Found link https://files.pythonhosted.org/packages/1c/14/b478e75b9a2ad0fdf37881717caf80eb6dd3cb9ac3d90f3af7c804adb852/orfdata-0.28.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.9), version: 0.28.0 2026-10-17T04:29:22,436 Skipping link: No binaries permitted for orfdata: 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https://www.piwheels.org/simple/orfdata/orfdata-0.17.0-py3-none-any.whl#sha256=f19b35c9b0f8a7e3602cee1ea4f0794f3d12d7ae073890e7e271b1d1bfceec92 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,897 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.16.0-py3-none-any.whl#sha256=8d567288d7f03b2a8a346be246bbb13aa250c61b55b89ae1e493dbf130c9b2cc (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,898 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.15.0-py3-none-any.whl#sha256=a9113b3c811c14080fccc262fc7d3129428b0c5e493aacd5ff2a9c564aefbd5c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,899 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.14.0-py3-none-any.whl#sha256=68a02237b184e2eb712854f94f1a3e121e1cffe3c76378bbc33a0ee2049c1f89 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,900 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.13.0-py3-none-any.whl#sha256=708d789cb7f01da911c1fcb53fc613a51d08978dba516bfcf4facd40875c8520 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,900 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.12.0-py3-none-any.whl#sha256=3e780f6c92764092934f43d9e3bc69497fef3e5ed3b471e2dd9efb7468471787 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,901 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.11.0-py3-none-any.whl#sha256=ec7e6439aa6f450087fa88dd9e2e23d3a5ef83a772401622b95d910a4a1f029c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,902 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.10.0-py3-none-any.whl#sha256=65db21afdb89bc160b14dba56ee80f94a39ea9c448105c0d5255a1460cb50256 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,903 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.9.0-py3-none-any.whl#sha256=2830e8180c3401f1e765abeab2337101a052975afe794ac64c4824ac87b56f16 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,904 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.8.0-py3-none-any.whl#sha256=f3179a493af31d4bfa6ddbba319a30631c3d3e44a0fad13631528b545e3f80cb (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,905 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.7.0-py3-none-any.whl#sha256=9e751a35c69a35be7da570127ffc072ffc3c4ed9b5c2fd0005229d8e7a77c704 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,906 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.6.0-py3-none-any.whl#sha256=b3d9297d24bbed1ee31bdea06ffa1384d9b682a77f0f67b16f7daa70aeb00fa0 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,906 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.5.0-py3-none-any.whl#sha256=6f4b83f7f24964798138035d12bb887aa0f8ba522099a27d40dbe20e9231bc76 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,907 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.4.0-py3-none-any.whl#sha256=20e08e8c304140d95d4d7228e30c37a01119b4eb0a558f38868f65fa956c91d3 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,907 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.3.0-py3-none-any.whl#sha256=50842b5d601681d2d383b9606e337fb2b83af7c2bbbd6979e61f543c1a1651bd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,908 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.2.0-py3-none-any.whl#sha256=a889faefe720028ad527c5374560c0105d7d523a59d934e2df48a81a4d3afaf9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,908 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-17T04:29:22,909 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-10-17T04:29:22,909 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-10-17T04:29:22,931 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-10-17T04:29:22,949 Collecting orfdata==0.33.0 2026-10-17T04:29:22,952 Created temporary directory: /tmp/pip-unpack-925v0ng_ 2026-10-17T04:29:23,674 Downloading orfdata-0.33.0.tar.gz (3.1 MB) 2026-10-17T04:29:25,154 Added orfdata==0.33.0 from https://files.pythonhosted.org/packages/7e/47/87fe5d4b96af8b4c837c3ab45e09b5fb7b25fc751d21d947dbca58f83877/orfdata-0.33.0.tar.gz to build tracker '/tmp/pip-build-tracker-bk3usdyx' 2026-10-17T04:29:25,160 Created temporary directory: /tmp/pip-build-env-2s0emorc 2026-10-17T04:29:25,165 Installing build dependencies: started 2026-10-17T04:29:25,167 Running command pip subprocess to install build dependencies 2026-10-17T04:29:26,354 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-10-17T04:29:26,802 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-17T04:29:26,825 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-17T04:29:28,605 Collecting setuptools>=77 2026-10-17T04:29:28,606 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata 2026-10-17T04:29:28,630 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl.metadata (6.6 kB) 2026-10-17T04:29:28,871 Collecting wheel 2026-10-17T04:29:28,872 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-10-17T04:29:28,885 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-10-17T04:29:29,073 Collecting packaging>=24.0 2026-10-17T04:29:29,074 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-10-17T04:29:29,088 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-10-17T04:29:29,296 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-17T04:29:29,327 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-17T04:29:29,423 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-17T04:29:29,456 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-17T04:29:29,491 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-17T04:29:29,586 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.0.0-py3-none-any.whl (818 kB) 2026-10-17T04:29:32,357 Installing collected packages: setuptools, packaging, wheel 2026-10-17T04:29:35,146 Creating /tmp/pip-build-env-2s0emorc/overlay/local/bin 2026-10-17T04:29:35,149 changing mode of /tmp/pip-build-env-2s0emorc/overlay/local/bin/wheel to 755 2026-10-17T04:29:35,170 Successfully installed packaging-26.3 setuptools-84.0.0 wheel-0.48.0 2026-10-17T04:29:35,454 Installing build dependencies: finished with status 'done' 2026-10-17T04:29:35,463 Getting requirements to build wheel: started 2026-10-17T04:29:35,464 Running command Getting requirements to build wheel 2026-10-17T04:29:36,184 running egg_info 2026-10-17T04:29:36,190 writing orfdata.egg-info/PKG-INFO 2026-10-17T04:29:36,198 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-17T04:29:36,199 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-17T04:29:36,204 writing requirements to orfdata.egg-info/requires.txt 2026-10-17T04:29:36,205 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-17T04:29:36,237 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:29:36,252 reading manifest template 'MANIFEST.in' 2026-10-17T04:29:36,746 adding license file 'LICENSE' 2026-10-17T04:29:36,760 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:29:36,859 Getting requirements to build wheel: finished with status 'done' 2026-10-17T04:29:36,862 Created temporary directory: /tmp/pip-modern-metadata-18h3mnzy 2026-10-17T04:29:36,865 Preparing metadata (pyproject.toml): started 2026-10-17T04:29:36,866 Running command Preparing metadata (pyproject.toml) 2026-10-17T04:29:37,579 running dist_info 2026-10-17T04:29:37,590 creating /tmp/pip-modern-metadata-18h3mnzy/orfdata.egg-info 2026-10-17T04:29:37,591 writing /tmp/pip-modern-metadata-18h3mnzy/orfdata.egg-info/PKG-INFO 2026-10-17T04:29:37,618 writing dependency_links to /tmp/pip-modern-metadata-18h3mnzy/orfdata.egg-info/dependency_links.txt 2026-10-17T04:29:37,620 writing entry points to /tmp/pip-modern-metadata-18h3mnzy/orfdata.egg-info/entry_points.txt 2026-10-17T04:29:37,626 writing requirements to /tmp/pip-modern-metadata-18h3mnzy/orfdata.egg-info/requires.txt 2026-10-17T04:29:37,628 writing top-level names to /tmp/pip-modern-metadata-18h3mnzy/orfdata.egg-info/top_level.txt 2026-10-17T04:29:37,630 writing manifest file '/tmp/pip-modern-metadata-18h3mnzy/orfdata.egg-info/SOURCES.txt' 2026-10-17T04:29:37,665 reading manifest file '/tmp/pip-modern-metadata-18h3mnzy/orfdata.egg-info/SOURCES.txt' 2026-10-17T04:29:37,669 reading manifest template 'MANIFEST.in' 2026-10-17T04:29:38,190 adding license file 'LICENSE' 2026-10-17T04:29:38,200 writing manifest file '/tmp/pip-modern-metadata-18h3mnzy/orfdata.egg-info/SOURCES.txt' 2026-10-17T04:29:38,201 creating '/tmp/pip-modern-metadata-18h3mnzy/orfdata-0.33.0.dist-info' 2026-10-17T04:29:38,331 Preparing metadata (pyproject.toml): finished with status 'done' 2026-10-17T04:29:38,337 Source in /tmp/pip-wheel-_3q7a0kp/orfdata_d96747f5de99427b986c2703e5a8fce0 has version 0.33.0, which satisfies requirement orfdata==0.33.0 from https://files.pythonhosted.org/packages/7e/47/87fe5d4b96af8b4c837c3ab45e09b5fb7b25fc751d21d947dbca58f83877/orfdata-0.33.0.tar.gz 2026-10-17T04:29:38,338 Removed orfdata==0.33.0 from https://files.pythonhosted.org/packages/7e/47/87fe5d4b96af8b4c837c3ab45e09b5fb7b25fc751d21d947dbca58f83877/orfdata-0.33.0.tar.gz from build tracker '/tmp/pip-build-tracker-bk3usdyx' 2026-10-17T04:29:38,344 Created temporary directory: /tmp/pip-unpack-1kbcjb2y 2026-10-17T04:29:38,344 Building wheels for collected packages: orfdata 2026-10-17T04:29:38,350 Created temporary directory: /tmp/pip-wheel-gh7yh6_y 2026-10-17T04:29:38,351 Destination directory: /tmp/pip-wheel-gh7yh6_y 2026-10-17T04:29:38,353 Building wheel for orfdata (pyproject.toml): started 2026-10-17T04:29:38,355 Running command Building wheel for orfdata (pyproject.toml) 2026-10-17T04:29:39,053 running bdist_wheel 2026-10-17T04:29:39,071 running build 2026-10-17T04:29:39,072 running build_py 2026-10-17T04:29:39,078 creating build/lib/orfdata 2026-10-17T04:29:39,081 copying orfdata/search_reference.py -> build/lib/orfdata 2026-10-17T04:29:39,084 copying orfdata/reference.py -> build/lib/orfdata 2026-10-17T04:29:39,087 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-10-17T04:29:39,090 copying orfdata/evidence.py -> build/lib/orfdata 2026-10-17T04:29:39,093 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-10-17T04:29:39,095 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-10-17T04:29:39,098 copying orfdata/build.py -> build/lib/orfdata 2026-10-17T04:29:39,101 copying orfdata/sequence.py -> build/lib/orfdata 2026-10-17T04:29:39,103 copying orfdata/catalogs.py -> build/lib/orfdata 2026-10-17T04:29:39,106 copying orfdata/catalog.py -> build/lib/orfdata 2026-10-17T04:29:39,109 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-10-17T04:29:39,111 copying orfdata/genomes.py -> build/lib/orfdata 2026-10-17T04:29:39,113 copying orfdata/viral.py -> build/lib/orfdata 2026-10-17T04:29:39,116 copying orfdata/__init__.py -> build/lib/orfdata 2026-10-17T04:29:39,118 copying orfdata/version.py -> build/lib/orfdata 2026-10-17T04:29:39,120 copying orfdata/_structure.py -> build/lib/orfdata 2026-10-17T04:29:39,122 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-10-17T04:29:39,125 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-10-17T04:29:39,127 copying orfdata/datasets.py -> build/lib/orfdata 2026-10-17T04:29:39,129 copying orfdata/pairing.py -> build/lib/orfdata 2026-10-17T04:29:39,133 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-10-17T04:29:39,135 copying orfdata/refseq.py -> build/lib/orfdata 2026-10-17T04:29:39,138 copying orfdata/model.py -> build/lib/orfdata 2026-10-17T04:29:39,142 copying orfdata/cli.py -> build/lib/orfdata 2026-10-17T04:29:39,144 copying orfdata/proteome.py -> build/lib/orfdata 2026-10-17T04:29:39,148 copying orfdata/dataset.py -> build/lib/orfdata 2026-10-17T04:29:39,151 copying orfdata/install.py -> build/lib/orfdata 2026-10-17T04:29:39,154 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-10-17T04:29:39,156 copying orfdata/measurements.py -> build/lib/orfdata 2026-10-17T04:29:39,159 copying orfdata/rna.py -> build/lib/orfdata 2026-10-17T04:29:39,162 copying orfdata/liftover.py -> build/lib/orfdata 2026-10-17T04:29:39,165 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-10-17T04:29:39,167 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-10-17T04:29:39,171 creating build/lib/orfdata/sources 2026-10-17T04:29:39,173 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-10-17T04:29:39,176 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-10-17T04:29:39,178 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-10-17T04:29:39,180 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-10-17T04:29:39,183 copying orfdata/sources/peptideatlas.py -> build/lib/orfdata/sources 2026-10-17T04:29:39,187 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-10-17T04:29:39,188 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-10-17T04:29:39,191 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-10-17T04:29:39,194 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-10-17T04:29:39,196 copying orfdata/sources/kaabinejadian.py -> build/lib/orfdata/sources 2026-10-17T04:29:39,199 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-10-17T04:29:39,204 running egg_info 2026-10-17T04:29:39,213 writing orfdata.egg-info/PKG-INFO 2026-10-17T04:29:39,220 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-17T04:29:39,222 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-17T04:29:39,226 writing requirements to orfdata.egg-info/requires.txt 2026-10-17T04:29:39,227 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-17T04:29:39,247 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:29:39,262 reading manifest template 'MANIFEST.in' 2026-10-17T04:29:39,741 adding license file 'LICENSE' 2026-10-17T04:29:39,755 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-17T04:29:39,768 creating build/lib/orfdata/data/uorf-evidence 2026-10-17T04:29:39,770 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:29:39,772 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:29:39,775 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:29:39,788 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-10-17T04:29:39,790 creating build/lib/orfdata/data/orf-evidence 2026-10-17T04:29:39,792 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:29:39,794 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:29:39,797 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:29:39,820 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-10-17T04:29:39,823 creating build/lib/orfdata/data/ires 2026-10-17T04:29:39,824 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-10-17T04:29:39,827 creating build/lib/orfdata/data/viral 2026-10-17T04:29:39,829 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-10-17T04:29:39,832 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-10-17T04:29:39,834 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-10-17T04:29:39,839 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-10-17T04:29:39,842 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-10-17T04:29:39,845 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-10-17T04:29:39,866 installing to build/bdist.linux-armv7l/wheel 2026-10-17T04:29:39,867 running install 2026-10-17T04:29:39,889 running install_lib 2026-10-17T04:29:39,894 creating build/bdist.linux-armv7l/wheel 2026-10-17T04:29:39,897 creating build/bdist.linux-armv7l/wheel/orfdata 2026-10-17T04:29:39,899 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,902 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,905 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,908 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,911 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,914 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,917 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,920 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,923 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,926 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,942 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,945 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,948 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,951 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-10-17T04:29:39,953 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:29:39,956 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:29:39,958 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:29:39,961 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:29:39,964 copying build/lib/orfdata/sources/peptideatlas.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:29:39,967 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:29:39,970 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:29:39,973 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:29:39,975 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:29:39,978 copying build/lib/orfdata/sources/kaabinejadian.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:29:39,980 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-17T04:29:39,984 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:39,987 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-10-17T04:29:39,989 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:29:39,997 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-10-17T04:29:39,998 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:29:40,002 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:29:40,004 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:29:40,035 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-17T04:29:40,038 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:29:40,041 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:29:40,046 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-10-17T04:29:40,047 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:29:40,050 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:29:40,053 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:29:40,071 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-17T04:29:40,075 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-10-17T04:29:40,076 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-17T04:29:40,080 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-17T04:29:40,084 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-10-17T04:29:40,086 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-10-17T04:29:40,090 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-17T04:29:40,093 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,096 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,100 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,103 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,107 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,111 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,115 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,119 copying build/lib/orfdata/refseq.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,123 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,128 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,132 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,137 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,142 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,147 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,151 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,155 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,158 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,162 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,166 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-17T04:29:40,169 running install_egg_info 2026-10-17T04:29:40,176 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.33.0-py3.11.egg-info 2026-10-17T04:29:40,196 running install_scripts 2026-10-17T04:29:40,215 creating build/bdist.linux-armv7l/wheel/orfdata-0.33.0.dist-info/WHEEL 2026-10-17T04:29:40,219 creating '/tmp/pip-wheel-gh7yh6_y/.tmp-axy4v7yd/orfdata-0.33.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-10-17T04:29:40,223 adding 'orfdata/__init__.py' 2026-10-17T04:29:40,225 adding 'orfdata/_pinned_genome.py' 2026-10-17T04:29:40,228 adding 'orfdata/_structure.py' 2026-10-17T04:29:40,233 adding 'orfdata/build.py' 2026-10-17T04:29:40,246 adding 'orfdata/catalog.py' 2026-10-17T04:29:40,248 adding 'orfdata/catalog_cli.py' 2026-10-17T04:29:40,250 adding 'orfdata/catalog_manifest.py' 2026-10-17T04:29:40,253 adding 'orfdata/catalogs.py' 2026-10-17T04:29:40,257 adding 'orfdata/cli.py' 2026-10-17T04:29:40,263 adding 'orfdata/dataset.py' 2026-10-17T04:29:40,266 adding 'orfdata/dataset_cli.py' 2026-10-17T04:29:40,269 adding 'orfdata/datasets.py' 2026-10-17T04:29:40,272 adding 'orfdata/evidence.py' 2026-10-17T04:29:40,274 adding 'orfdata/evidence_summary.py' 2026-10-17T04:29:40,276 adding 'orfdata/genomes.py' 2026-10-17T04:29:40,278 adding 'orfdata/genomes_cli.py' 2026-10-17T04:29:40,280 adding 'orfdata/initiation_context.py' 2026-10-17T04:29:40,283 adding 'orfdata/install.py' 2026-10-17T04:29:40,287 adding 'orfdata/liftover.py' 2026-10-17T04:29:40,289 adding 'orfdata/liftover_cli.py' 2026-10-17T04:29:40,292 adding 'orfdata/measurements.py' 2026-10-17T04:29:40,296 adding 'orfdata/model.py' 2026-10-17T04:29:40,299 adding 'orfdata/pairing.py' 2026-10-17T04:29:40,306 adding 'orfdata/proteome.py' 2026-10-17T04:29:40,308 adding 'orfdata/proteome_cli.py' 2026-10-17T04:29:40,310 adding 'orfdata/reference.py' 2026-10-17T04:29:40,311 adding 'orfdata/reference_mapping.py' 2026-10-17T04:29:40,313 adding 'orfdata/refseq.py' 2026-10-17T04:29:40,316 adding 'orfdata/rna.py' 2026-10-17T04:29:40,318 adding 'orfdata/search_reference.py' 2026-10-17T04:29:40,319 adding 'orfdata/sequence.py' 2026-10-17T04:29:40,321 adding 'orfdata/version.py' 2026-10-17T04:29:40,322 adding 'orfdata/viral.py' 2026-10-17T04:29:40,326 adding 'orfdata/data/catalogs.json' 2026-10-17T04:29:40,327 adding 'orfdata/data/chains.json' 2026-10-17T04:29:40,335 adding 'orfdata/data/datasets.json' 2026-10-17T04:29:40,337 adding 'orfdata/data/genomes.json' 2026-10-17T04:29:40,341 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-10-17T04:29:40,343 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-10-17T04:29:40,344 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-10-17T04:29:40,499 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-10-17T04:29:40,508 adding 'orfdata/data/orf-evidence/manifest.json' 2026-10-17T04:29:40,510 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-10-17T04:29:40,512 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-10-17T04:29:40,591 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-10-17T04:29:40,597 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-10-17T04:29:40,599 adding 'orfdata/data/viral/NOTICE.md' 2026-10-17T04:29:40,601 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-10-17T04:29:40,603 adding 'orfdata/sources/__init__.py' 2026-10-17T04:29:40,606 adding 'orfdata/sources/copy.py' 2026-10-17T04:29:40,608 adding 'orfdata/sources/ingolia.py' 2026-10-17T04:29:40,610 adding 'orfdata/sources/kaabinejadian.py' 2026-10-17T04:29:40,613 adding 'orfdata/sources/ncorf_mammals.py' 2026-10-17T04:29:40,615 adding 'orfdata/sources/openprot.py' 2026-10-17T04:29:40,617 adding 'orfdata/sources/peptideatlas.py' 2026-10-17T04:29:40,620 adding 'orfdata/sources/pfizer.py' 2026-10-17T04:29:40,623 adding 'orfdata/sources/pfizer_rna.py' 2026-10-17T04:29:40,625 adding 'orfdata/sources/riborf.py' 2026-10-17T04:29:40,628 adding 'orfdata/sources/wang.py' 2026-10-17T04:29:40,632 adding 'orfdata-0.33.0.dist-info/licenses/LICENSE' 2026-10-17T04:29:40,634 adding 'orfdata-0.33.0.dist-info/METADATA' 2026-10-17T04:29:40,635 adding 'orfdata-0.33.0.dist-info/WHEEL' 2026-10-17T04:29:40,636 adding 'orfdata-0.33.0.dist-info/entry_points.txt' 2026-10-17T04:29:40,637 adding 'orfdata-0.33.0.dist-info/top_level.txt' 2026-10-17T04:29:40,638 adding 'orfdata-0.33.0.dist-info/RECORD' 2026-10-17T04:29:40,671 removing build/bdist.linux-armv7l/wheel 2026-10-17T04:29:40,789 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-10-17T04:29:40,838 Created wheel for orfdata: filename=orfdata-0.33.0-py3-none-any.whl size=2107034 sha256=9e382036ebffd685420cbf7cc2b2ec6e013c9f92e734b45208ed5d58abfa0113 2026-10-17T04:29:40,839 Stored in directory: /tmp/pip-ephem-wheel-cache-rmvlayk2/wheels/63/6a/d7/2fc88153f330c01272405a648400590c435fb8249799732272 2026-10-17T04:29:40,853 Successfully built orfdata 2026-10-17T04:29:40,980 Removed build tracker: '/tmp/pip-build-tracker-bk3usdyx'