2026-10-26T21:05:23,960 Created temporary directory: /tmp/pip-ephem-wheel-cache-hrdbqf84 2026-10-26T21:05:23,962 Created temporary directory: /tmp/pip-build-tracker-h1yv5dkg 2026-10-26T21:05:23,962 Initialized build tracking at /tmp/pip-build-tracker-h1yv5dkg 2026-10-26T21:05:23,963 Created build tracker: /tmp/pip-build-tracker-h1yv5dkg 2026-10-26T21:05:23,963 Entered build tracker: /tmp/pip-build-tracker-h1yv5dkg 2026-10-26T21:05:23,964 Created temporary directory: /tmp/pip-wheel-itchlbuc 2026-10-26T21:05:23,967 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/0d/2b/8a1cf6202277071564f33ec9b1c23f9169b59d6b24aaaaeb07114d584f39/orfdata-0.38.2-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-26T21:05:24,218 Found link https://files.pythonhosted.org/packages/31/c7/6cbf4bd3b6313d41d9f9fe8f64318f40651c61ad793fcf2f554dd4d6bebd/orfdata-0.38.2.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.38.2 2026-10-26T21:05:24,219 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/ee/a3/b89e60a0cbec810ca17422aec8a680bffd57c39a70b985913dad447bdae1/orfdata-0.39.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-26T21:05:24,220 Found link https://files.pythonhosted.org/packages/d7/c8/f6f8144382cbb4f97023936babb7b072de0e25128d9181c8114b2ca06e83/orfdata-0.39.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.39.0 2026-10-26T21:05:24,221 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/4b/6b/0b41720d0bdf51527920d20c2bdac7ee80329a458e6a685f4cfcce82040f/orfdata-0.39.1-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-26T21:05:24,222 Found link https://files.pythonhosted.org/packages/c7/73/787b01d73cbd236688fc5aa5a27a87330445cdd616c30b78841163e6ff7d/orfdata-0.39.1.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.39.1 2026-10-26T21:05:24,223 Fetching project page and analyzing links: https://www.piwheels.org/simple/orfdata/ 2026-10-26T21:05:24,223 Getting page https://www.piwheels.org/simple/orfdata/ 2026-10-26T21:05:24,225 Found index url https://www.piwheels.org/simple 2026-10-26T21:05:24,421 Fetched page https://www.piwheels.org/simple/orfdata/ as text/html 2026-10-26T21:05:24,430 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.35.0-py3-none-any.whl#sha256=bbbf4e552150417fb384c8a699142328e0145b5ff9d2ce4f2ac00c429522037b (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-26T21:05:24,431 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.34.1-py3-none-any.whl#sha256=9b84448b6d1fb76a8177077e023e7ca40997eea9c7d30cf8d9cbfc4cd43443c0 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-26T21:05:24,431 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.34.0-py3-none-any.whl#sha256=01f80cbc623e5cd74226db0a76fdf3de75c6d177105d5b48b432811ced5bab28 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,432 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.33.0-py3-none-any.whl#sha256=9e382036ebffd685420cbf7cc2b2ec6e013c9f92e734b45208ed5d58abfa0113 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,432 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.32.0-py3-none-any.whl#sha256=9abb770a7b4c89a3296ff04854f1aace3ecf7c2e2cd4a0fffcb75839b309c8ad (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,433 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.31.0-py3-none-any.whl#sha256=7598690474f6698ab3beecac966df858d1100dbd6fa083c47deac54041ecebfa (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,433 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.30.0-py3-none-any.whl#sha256=61decb0293b92c1a9797112f682ca8a89087e52bf1aabf4052374820d8461ba9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,434 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.29.0-py3-none-any.whl#sha256=1e7f9dafbee2f86a5965b15c0b8a0e01eca6e0b1bc8f0f69678f17b1492d428e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,434 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.28.0-py3-none-any.whl#sha256=23e8fc88e29ea6703984fb8c729de332527b3667c5becff1aaa627f0499336d3 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,435 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.27.1-py3-none-any.whl#sha256=3a0f09acc954353ba946a2543f2c9f5e9d6a396c1ab5c116b2c56be2e205b65b (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,435 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.18.0-py3-none-any.whl#sha256=95a47ff1342f25a0b62b1f77b884f4184a7fe9ccdd28e798a454ee5c76147b33 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,436 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.17.0-py3-none-any.whl#sha256=f19b35c9b0f8a7e3602cee1ea4f0794f3d12d7ae073890e7e271b1d1bfceec92 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,436 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.16.0-py3-none-any.whl#sha256=8d567288d7f03b2a8a346be246bbb13aa250c61b55b89ae1e493dbf130c9b2cc (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,437 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.15.0-py3-none-any.whl#sha256=a9113b3c811c14080fccc262fc7d3129428b0c5e493aacd5ff2a9c564aefbd5c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,437 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.14.0-py3-none-any.whl#sha256=68a02237b184e2eb712854f94f1a3e121e1cffe3c76378bbc33a0ee2049c1f89 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,438 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.13.0-py3-none-any.whl#sha256=708d789cb7f01da911c1fcb53fc613a51d08978dba516bfcf4facd40875c8520 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,438 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.12.0-py3-none-any.whl#sha256=3e780f6c92764092934f43d9e3bc69497fef3e5ed3b471e2dd9efb7468471787 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,439 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.11.0-py3-none-any.whl#sha256=ec7e6439aa6f450087fa88dd9e2e23d3a5ef83a772401622b95d910a4a1f029c (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,440 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.10.0-py3-none-any.whl#sha256=65db21afdb89bc160b14dba56ee80f94a39ea9c448105c0d5255a1460cb50256 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,440 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.9.0-py3-none-any.whl#sha256=2830e8180c3401f1e765abeab2337101a052975afe794ac64c4824ac87b56f16 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,441 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.8.0-py3-none-any.whl#sha256=f3179a493af31d4bfa6ddbba319a30631c3d3e44a0fad13631528b545e3f80cb (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,441 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.7.0-py3-none-any.whl#sha256=9e751a35c69a35be7da570127ffc072ffc3c4ed9b5c2fd0005229d8e7a77c704 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,442 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.6.0-py3-none-any.whl#sha256=b3d9297d24bbed1ee31bdea06ffa1384d9b682a77f0f67b16f7daa70aeb00fa0 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,443 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.5.0-py3-none-any.whl#sha256=6f4b83f7f24964798138035d12bb887aa0f8ba522099a27d40dbe20e9231bc76 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,443 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.4.0-py3-none-any.whl#sha256=20e08e8c304140d95d4d7228e30c37a01119b4eb0a558f38868f65fa956c91d3 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,443 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.3.0-py3-none-any.whl#sha256=50842b5d601681d2d383b9606e337fb2b83af7c2bbbd6979e61f543c1a1651bd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,444 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.2.0-py3-none-any.whl#sha256=a889faefe720028ad527c5374560c0105d7d523a59d934e2df48a81a4d3afaf9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,444 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-26T21:05:24,445 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-10-26T21:05:24,446 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-10-26T21:05:24,469 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-10-26T21:05:24,487 Collecting orfdata==0.36.0 2026-10-26T21:05:24,489 Created temporary directory: /tmp/pip-unpack-a1t_j7uy 2026-10-26T21:05:24,645 Downloading orfdata-0.36.0.tar.gz (3.4 MB) 2026-10-26T21:05:25,894 Added orfdata==0.36.0 from https://files.pythonhosted.org/packages/01/ea/2c2f9dd5dd05534a8f5a587e7b0bd4717b0868f8f5c86174de0f929dd3e1/orfdata-0.36.0.tar.gz to build tracker '/tmp/pip-build-tracker-h1yv5dkg' 2026-10-26T21:05:25,900 Created temporary directory: /tmp/pip-build-env-b1tk0_d2 2026-10-26T21:05:25,905 Installing build dependencies: started 2026-10-26T21:05:25,906 Running command pip subprocess to install build dependencies 2026-10-26T21:05:27,075 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-10-26T21:05:27,527 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-26T21:05:27,552 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-26T21:05:29,505 Collecting setuptools>=77 2026-10-26T21:05:29,506 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata 2026-10-26T21:05:29,521 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata (6.6 kB) 2026-10-26T21:05:29,766 Collecting wheel 2026-10-26T21:05:29,767 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-10-26T21:05:29,782 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-10-26T21:05:29,964 Collecting packaging>=24.0 2026-10-26T21:05:29,965 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-10-26T21:05:29,978 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-10-26T21:05:30,172 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-26T21:05:30,194 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-26T21:05:30,270 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-10-26T21:05:30,301 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-26T21:05:30,330 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-26T21:05:30,418 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-10-26T21:05:33,184 Installing collected packages: setuptools, packaging, wheel 2026-10-26T21:05:35,973 Creating /tmp/pip-build-env-b1tk0_d2/overlay/local/bin 2026-10-26T21:05:35,975 changing mode of /tmp/pip-build-env-b1tk0_d2/overlay/local/bin/wheel to 755 2026-10-26T21:05:35,995 Successfully installed packaging-26.3 setuptools-84.2.1 wheel-0.48.0 2026-10-26T21:05:36,284 Installing build dependencies: finished with status 'done' 2026-10-26T21:05:36,291 Getting requirements to build wheel: started 2026-10-26T21:05:36,292 Running command Getting requirements to build wheel 2026-10-26T21:05:37,226 running egg_info 2026-10-26T21:05:37,232 writing orfdata.egg-info/PKG-INFO 2026-10-26T21:05:37,240 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-26T21:05:37,241 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-26T21:05:37,246 writing requirements to orfdata.egg-info/requires.txt 2026-10-26T21:05:37,247 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-26T21:05:37,280 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-26T21:05:37,297 reading manifest template 'MANIFEST.in' 2026-10-26T21:05:38,030 adding license file 'LICENSE' 2026-10-26T21:05:38,046 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-26T21:05:38,148 Getting requirements to build wheel: finished with status 'done' 2026-10-26T21:05:38,152 Created temporary directory: /tmp/pip-modern-metadata-3rc8jvp_ 2026-10-26T21:05:38,154 Preparing metadata (pyproject.toml): started 2026-10-26T21:05:38,155 Running command Preparing metadata (pyproject.toml) 2026-10-26T21:05:38,856 running dist_info 2026-10-26T21:05:38,866 creating /tmp/pip-modern-metadata-3rc8jvp_/orfdata.egg-info 2026-10-26T21:05:38,867 writing /tmp/pip-modern-metadata-3rc8jvp_/orfdata.egg-info/PKG-INFO 2026-10-26T21:05:38,875 writing dependency_links to /tmp/pip-modern-metadata-3rc8jvp_/orfdata.egg-info/dependency_links.txt 2026-10-26T21:05:38,876 writing entry points to /tmp/pip-modern-metadata-3rc8jvp_/orfdata.egg-info/entry_points.txt 2026-10-26T21:05:38,881 writing requirements to /tmp/pip-modern-metadata-3rc8jvp_/orfdata.egg-info/requires.txt 2026-10-26T21:05:38,882 writing top-level names to /tmp/pip-modern-metadata-3rc8jvp_/orfdata.egg-info/top_level.txt 2026-10-26T21:05:38,883 writing manifest file '/tmp/pip-modern-metadata-3rc8jvp_/orfdata.egg-info/SOURCES.txt' 2026-10-26T21:05:38,916 reading manifest file '/tmp/pip-modern-metadata-3rc8jvp_/orfdata.egg-info/SOURCES.txt' 2026-10-26T21:05:38,917 reading manifest template 'MANIFEST.in' 2026-10-26T21:05:39,413 adding license file 'LICENSE' 2026-10-26T21:05:39,425 writing manifest file '/tmp/pip-modern-metadata-3rc8jvp_/orfdata.egg-info/SOURCES.txt' 2026-10-26T21:05:39,427 creating '/tmp/pip-modern-metadata-3rc8jvp_/orfdata-0.36.0.dist-info' 2026-10-26T21:05:39,563 Preparing metadata (pyproject.toml): finished with status 'done' 2026-10-26T21:05:39,569 Source in /tmp/pip-wheel-itchlbuc/orfdata_c55d0653ad6345669b0c7b64dde6cb78 has version 0.36.0, which satisfies requirement orfdata==0.36.0 from https://files.pythonhosted.org/packages/01/ea/2c2f9dd5dd05534a8f5a587e7b0bd4717b0868f8f5c86174de0f929dd3e1/orfdata-0.36.0.tar.gz 2026-10-26T21:05:39,570 Removed orfdata==0.36.0 from https://files.pythonhosted.org/packages/01/ea/2c2f9dd5dd05534a8f5a587e7b0bd4717b0868f8f5c86174de0f929dd3e1/orfdata-0.36.0.tar.gz from build tracker '/tmp/pip-build-tracker-h1yv5dkg' 2026-10-26T21:05:39,581 Created temporary directory: /tmp/pip-unpack-mjfjqap9 2026-10-26T21:05:39,581 Building wheels for collected packages: orfdata 2026-10-26T21:05:39,585 Created temporary directory: /tmp/pip-wheel-sn4qlq77 2026-10-26T21:05:39,586 Destination directory: /tmp/pip-wheel-sn4qlq77 2026-10-26T21:05:39,588 Building wheel for orfdata (pyproject.toml): started 2026-10-26T21:05:39,590 Running command Building wheel for orfdata (pyproject.toml) 2026-10-26T21:05:40,285 running bdist_wheel 2026-10-26T21:05:40,303 running build 2026-10-26T21:05:40,303 running build_py 2026-10-26T21:05:40,310 creating build/lib/orfdata 2026-10-26T21:05:40,313 copying orfdata/pairing.py -> build/lib/orfdata 2026-10-26T21:05:40,316 copying orfdata/model.py -> build/lib/orfdata 2026-10-26T21:05:40,319 copying orfdata/dataset.py -> build/lib/orfdata 2026-10-26T21:05:40,322 copying orfdata/viral_panel.py -> build/lib/orfdata 2026-10-26T21:05:40,325 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-10-26T21:05:40,327 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-10-26T21:05:40,329 copying orfdata/install.py -> build/lib/orfdata 2026-10-26T21:05:40,332 copying orfdata/record_sources.py -> build/lib/orfdata 2026-10-26T21:05:40,335 copying orfdata/viral_coverage.py -> build/lib/orfdata 2026-10-26T21:05:40,338 copying orfdata/viral_subsets.py -> build/lib/orfdata 2026-10-26T21:05:40,340 copying orfdata/genomes.py -> build/lib/orfdata 2026-10-26T21:05:40,344 copying orfdata/download_cli.py -> build/lib/orfdata 2026-10-26T21:05:40,347 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-10-26T21:05:40,350 copying orfdata/reference_table.py -> build/lib/orfdata 2026-10-26T21:05:40,352 copying orfdata/build.py -> build/lib/orfdata 2026-10-26T21:05:40,355 copying orfdata/refseq.py -> build/lib/orfdata 2026-10-26T21:05:40,357 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-10-26T21:05:40,359 copying orfdata/viral_registry.py -> build/lib/orfdata 2026-10-26T21:05:40,361 copying orfdata/catalog.py -> build/lib/orfdata 2026-10-26T21:05:40,364 copying orfdata/gtf.py -> build/lib/orfdata 2026-10-26T21:05:40,366 copying orfdata/proteome.py -> build/lib/orfdata 2026-10-26T21:05:40,370 copying orfdata/reference_ledger.py -> build/lib/orfdata 2026-10-26T21:05:40,373 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-10-26T21:05:40,375 copying orfdata/catalogs.py -> build/lib/orfdata 2026-10-26T21:05:40,377 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-10-26T21:05:40,379 copying orfdata/viral_cli.py -> build/lib/orfdata 2026-10-26T21:05:40,381 copying orfdata/liftover.py -> build/lib/orfdata 2026-10-26T21:05:40,384 copying orfdata/evidence.py -> build/lib/orfdata 2026-10-26T21:05:40,386 copying orfdata/measurements.py -> build/lib/orfdata 2026-10-26T21:05:40,389 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-10-26T21:05:40,391 copying orfdata/cli.py -> build/lib/orfdata 2026-10-26T21:05:40,393 copying orfdata/reference.py -> build/lib/orfdata 2026-10-26T21:05:40,396 copying orfdata/cli_output.py -> build/lib/orfdata 2026-10-26T21:05:40,398 copying orfdata/sequence.py -> build/lib/orfdata 2026-10-26T21:05:40,401 copying orfdata/version.py -> build/lib/orfdata 2026-10-26T21:05:40,403 copying orfdata/_structure.py -> build/lib/orfdata 2026-10-26T21:05:40,405 copying orfdata/genbank.py -> build/lib/orfdata 2026-10-26T21:05:40,408 copying orfdata/search_reference.py -> build/lib/orfdata 2026-10-26T21:05:40,410 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-10-26T21:05:40,413 copying orfdata/downloads.py -> build/lib/orfdata 2026-10-26T21:05:40,416 copying orfdata/fasta.py -> build/lib/orfdata 2026-10-26T21:05:40,418 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-10-26T21:05:40,421 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-10-26T21:05:40,423 copying orfdata/__init__.py -> build/lib/orfdata 2026-10-26T21:05:40,426 copying orfdata/datasets.py -> build/lib/orfdata 2026-10-26T21:05:40,429 copying orfdata/viral_annotation.py -> build/lib/orfdata 2026-10-26T21:05:40,432 copying orfdata/net.py -> build/lib/orfdata 2026-10-26T21:05:40,434 copying orfdata/viral.py -> build/lib/orfdata 2026-10-26T21:05:40,436 copying orfdata/rna.py -> build/lib/orfdata 2026-10-26T21:05:40,441 creating build/lib/orfdata/sources 2026-10-26T21:05:40,442 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-10-26T21:05:40,445 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-10-26T21:05:40,448 copying orfdata/sources/peptideatlas.py -> build/lib/orfdata/sources 2026-10-26T21:05:40,452 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-10-26T21:05:40,456 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-10-26T21:05:40,459 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-10-26T21:05:40,461 copying orfdata/sources/kaabinejadian.py -> build/lib/orfdata/sources 2026-10-26T21:05:40,464 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-10-26T21:05:40,466 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-10-26T21:05:40,468 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-10-26T21:05:40,471 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-10-26T21:05:40,474 running egg_info 2026-10-26T21:05:40,483 writing orfdata.egg-info/PKG-INFO 2026-10-26T21:05:40,490 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-26T21:05:40,492 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-26T21:05:40,496 writing requirements to orfdata.egg-info/requires.txt 2026-10-26T21:05:40,497 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-26T21:05:40,517 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-26T21:05:40,535 reading manifest template 'MANIFEST.in' 2026-10-26T21:05:41,187 adding license file 'LICENSE' 2026-10-26T21:05:41,211 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-26T21:05:41,233 creating build/lib/orfdata/data/uorf-evidence 2026-10-26T21:05:41,235 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-26T21:05:41,238 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-26T21:05:41,240 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-10-26T21:05:41,242 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-10-26T21:05:41,255 creating build/lib/orfdata/data/orf-evidence 2026-10-26T21:05:41,256 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-26T21:05:41,259 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-26T21:05:41,262 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-10-26T21:05:41,264 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-10-26T21:05:41,287 creating build/lib/orfdata/data/ires 2026-10-26T21:05:41,288 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-10-26T21:05:41,291 creating build/lib/orfdata/data/viral 2026-10-26T21:05:41,292 copying orfdata/data/viral/subsets.yaml -> build/lib/orfdata/data/viral 2026-10-26T21:05:41,295 copying orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/lib/orfdata/data/viral 2026-10-26T21:05:41,297 copying orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/lib/orfdata/data/viral 2026-10-26T21:05:41,301 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-10-26T21:05:41,303 copying orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/lib/orfdata/data/viral 2026-10-26T21:05:41,307 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-10-26T21:05:41,310 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-10-26T21:05:41,315 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-10-26T21:05:41,318 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-10-26T21:05:41,321 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-10-26T21:05:41,345 installing to build/bdist.linux-armv7l/wheel 2026-10-26T21:05:41,345 running install 2026-10-26T21:05:41,368 running install_lib 2026-10-26T21:05:41,374 creating build/bdist.linux-armv7l/wheel 2026-10-26T21:05:41,377 creating build/bdist.linux-armv7l/wheel/orfdata 2026-10-26T21:05:41,378 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,380 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,383 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,386 copying build/lib/orfdata/viral_panel.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,389 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,391 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,393 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,396 copying build/lib/orfdata/record_sources.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,398 copying build/lib/orfdata/viral_coverage.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,401 copying build/lib/orfdata/viral_subsets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,403 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,405 copying build/lib/orfdata/download_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,408 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,410 copying build/lib/orfdata/reference_table.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,413 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,416 copying build/lib/orfdata/refseq.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,418 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,420 copying build/lib/orfdata/viral_registry.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,422 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,426 copying build/lib/orfdata/gtf.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,429 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,433 copying build/lib/orfdata/reference_ledger.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,435 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,438 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,440 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,442 copying build/lib/orfdata/viral_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,445 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,447 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,450 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,453 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,455 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,457 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,460 copying build/lib/orfdata/cli_output.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,462 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,465 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,467 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,469 copying build/lib/orfdata/genbank.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,472 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,475 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,477 copying build/lib/orfdata/downloads.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,480 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-10-26T21:05:41,481 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-26T21:05:41,483 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-26T21:05:41,485 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-26T21:05:41,490 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-26T21:05:41,494 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-10-26T21:05:41,495 copying build/lib/orfdata/data/viral/subsets.yaml -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-26T21:05:41,497 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-26T21:05:41,500 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-26T21:05:41,503 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-26T21:05:41,505 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-26T21:05:41,508 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-26T21:05:41,510 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-10-26T21:05:41,511 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-26T21:05:41,513 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-26T21:05:41,515 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-26T21:05:41,516 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-26T21:05:41,529 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-10-26T21:05:41,530 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-26T21:05:41,532 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-26T21:05:41,534 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-26T21:05:41,535 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-26T21:05:41,562 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-10-26T21:05:41,562 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-10-26T21:05:41,565 copying build/lib/orfdata/fasta.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,567 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,569 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,571 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,573 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,576 copying build/lib/orfdata/viral_annotation.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,578 copying build/lib/orfdata/net.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,580 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,583 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-10-26T21:05:41,584 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-26T21:05:41,587 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-26T21:05:41,589 copying build/lib/orfdata/sources/peptideatlas.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-26T21:05:41,592 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-26T21:05:41,594 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-26T21:05:41,597 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-26T21:05:41,599 copying build/lib/orfdata/sources/kaabinejadian.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-26T21:05:41,602 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-26T21:05:41,604 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-26T21:05:41,607 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-26T21:05:41,609 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-26T21:05:41,611 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-26T21:05:41,613 running install_egg_info 2026-10-26T21:05:41,618 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.36.0-py3.11.egg-info 2026-10-26T21:05:41,630 running install_scripts 2026-10-26T21:05:41,642 creating build/bdist.linux-armv7l/wheel/orfdata-0.36.0.dist-info/WHEEL 2026-10-26T21:05:41,644 creating '/tmp/pip-wheel-sn4qlq77/.tmp-uizx10ks/orfdata-0.36.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-10-26T21:05:41,648 adding 'orfdata/__init__.py' 2026-10-26T21:05:41,649 adding 'orfdata/_pinned_genome.py' 2026-10-26T21:05:41,650 adding 'orfdata/_structure.py' 2026-10-26T21:05:41,654 adding 'orfdata/build.py' 2026-10-26T21:05:41,663 adding 'orfdata/catalog.py' 2026-10-26T21:05:41,664 adding 'orfdata/catalog_cli.py' 2026-10-26T21:05:41,666 adding 'orfdata/catalog_manifest.py' 2026-10-26T21:05:41,668 adding 'orfdata/catalogs.py' 2026-10-26T21:05:41,671 adding 'orfdata/cli.py' 2026-10-26T21:05:41,672 adding 'orfdata/cli_output.py' 2026-10-26T21:05:41,676 adding 'orfdata/dataset.py' 2026-10-26T21:05:41,678 adding 'orfdata/dataset_cli.py' 2026-10-26T21:05:41,681 adding 'orfdata/datasets.py' 2026-10-26T21:05:41,683 adding 'orfdata/download_cli.py' 2026-10-26T21:05:41,685 adding 'orfdata/downloads.py' 2026-10-26T21:05:41,687 adding 'orfdata/evidence.py' 2026-10-26T21:05:41,688 adding 'orfdata/evidence_summary.py' 2026-10-26T21:05:41,689 adding 'orfdata/fasta.py' 2026-10-26T21:05:41,691 adding 'orfdata/genbank.py' 2026-10-26T21:05:41,693 adding 'orfdata/genomes.py' 2026-10-26T21:05:41,694 adding 'orfdata/genomes_cli.py' 2026-10-26T21:05:41,696 adding 'orfdata/gtf.py' 2026-10-26T21:05:41,698 adding 'orfdata/initiation_context.py' 2026-10-26T21:05:41,700 adding 'orfdata/install.py' 2026-10-26T21:05:41,702 adding 'orfdata/liftover.py' 2026-10-26T21:05:41,704 adding 'orfdata/liftover_cli.py' 2026-10-26T21:05:41,707 adding 'orfdata/measurements.py' 2026-10-26T21:05:41,711 adding 'orfdata/model.py' 2026-10-26T21:05:41,713 adding 'orfdata/net.py' 2026-10-26T21:05:41,715 adding 'orfdata/pairing.py' 2026-10-26T21:05:41,731 adding 'orfdata/proteome.py' 2026-10-26T21:05:41,733 adding 'orfdata/proteome_cli.py' 2026-10-26T21:05:41,735 adding 'orfdata/record_sources.py' 2026-10-26T21:05:41,737 adding 'orfdata/reference.py' 2026-10-26T21:05:41,739 adding 'orfdata/reference_ledger.py' 2026-10-26T21:05:41,741 adding 'orfdata/reference_mapping.py' 2026-10-26T21:05:41,743 adding 'orfdata/reference_table.py' 2026-10-26T21:05:41,744 adding 'orfdata/refseq.py' 2026-10-26T21:05:41,747 adding 'orfdata/rna.py' 2026-10-26T21:05:41,749 adding 'orfdata/search_reference.py' 2026-10-26T21:05:41,750 adding 'orfdata/sequence.py' 2026-10-26T21:05:41,751 adding 'orfdata/version.py' 2026-10-26T21:05:41,753 adding 'orfdata/viral.py' 2026-10-26T21:05:41,756 adding 'orfdata/viral_annotation.py' 2026-10-26T21:05:41,758 adding 'orfdata/viral_cli.py' 2026-10-26T21:05:41,760 adding 'orfdata/viral_coverage.py' 2026-10-26T21:05:41,767 adding 'orfdata/viral_panel.py' 2026-10-26T21:05:41,769 adding 'orfdata/viral_registry.py' 2026-10-26T21:05:41,771 adding 'orfdata/viral_subsets.py' 2026-10-26T21:05:41,774 adding 'orfdata/data/catalogs.json' 2026-10-26T21:05:41,776 adding 'orfdata/data/chains.json' 2026-10-26T21:05:41,784 adding 'orfdata/data/datasets.json' 2026-10-26T21:05:41,786 adding 'orfdata/data/genomes.json' 2026-10-26T21:05:41,789 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-10-26T21:05:41,791 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-10-26T21:05:41,792 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-10-26T21:05:41,947 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-10-26T21:05:41,956 adding 'orfdata/data/orf-evidence/manifest.json' 2026-10-26T21:05:41,958 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-10-26T21:05:41,959 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-10-26T21:05:42,038 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-10-26T21:05:42,044 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-10-26T21:05:42,046 adding 'orfdata/data/viral/NOTICE.md' 2026-10-26T21:05:42,048 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv' 2026-10-26T21:05:42,053 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv' 2026-10-26T21:05:42,057 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv' 2026-10-26T21:05:42,059 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-10-26T21:05:42,060 adding 'orfdata/data/viral/subsets.yaml' 2026-10-26T21:05:42,062 adding 'orfdata/sources/__init__.py' 2026-10-26T21:05:42,065 adding 'orfdata/sources/copy.py' 2026-10-26T21:05:42,067 adding 'orfdata/sources/ingolia.py' 2026-10-26T21:05:42,069 adding 'orfdata/sources/kaabinejadian.py' 2026-10-26T21:05:42,071 adding 'orfdata/sources/ncorf_mammals.py' 2026-10-26T21:05:42,073 adding 'orfdata/sources/openprot.py' 2026-10-26T21:05:42,075 adding 'orfdata/sources/peptideatlas.py' 2026-10-26T21:05:42,077 adding 'orfdata/sources/pfizer.py' 2026-10-26T21:05:42,079 adding 'orfdata/sources/pfizer_rna.py' 2026-10-26T21:05:42,082 adding 'orfdata/sources/riborf.py' 2026-10-26T21:05:42,084 adding 'orfdata/sources/wang.py' 2026-10-26T21:05:42,088 adding 'orfdata-0.36.0.dist-info/licenses/LICENSE' 2026-10-26T21:05:42,090 adding 'orfdata-0.36.0.dist-info/METADATA' 2026-10-26T21:05:42,091 adding 'orfdata-0.36.0.dist-info/WHEEL' 2026-10-26T21:05:42,092 adding 'orfdata-0.36.0.dist-info/entry_points.txt' 2026-10-26T21:05:42,093 adding 'orfdata-0.36.0.dist-info/top_level.txt' 2026-10-26T21:05:42,095 adding 'orfdata-0.36.0.dist-info/RECORD' 2026-10-26T21:05:42,129 removing build/bdist.linux-armv7l/wheel 2026-10-26T21:05:42,253 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-10-26T21:05:42,308 Created wheel for orfdata: filename=orfdata-0.36.0-py3-none-any.whl size=2229511 sha256=05a9e84fb23e55c171e2b64a94ccdb3fcaca34ab7f2e36cb9245bbca150b7460 2026-10-26T21:05:42,309 Stored in directory: /tmp/pip-ephem-wheel-cache-jkgwrran/wheels/e0/6b/e2/bbf85718638e040a64511aaa6725805de0b0e37a919f2d8506 2026-10-26T21:05:42,325 Successfully built orfdata 2026-10-26T21:05:42,387 Removed build tracker: '/tmp/pip-build-tracker-h1yv5dkg'