2026-10-28T03:45:48,145 Created temporary directory: /tmp/pip-ephem-wheel-cache-346pbwjp 2026-10-28T03:45:48,147 Created temporary directory: /tmp/pip-build-tracker-gfk4yshh 2026-10-28T03:45:48,148 Initialized build tracking at /tmp/pip-build-tracker-gfk4yshh 2026-10-28T03:45:48,148 Created build tracker: /tmp/pip-build-tracker-gfk4yshh 2026-10-28T03:45:48,149 Entered build tracker: /tmp/pip-build-tracker-gfk4yshh 2026-10-28T03:45:48,150 Created temporary directory: /tmp/pip-wheel-ayo4qops 2026-10-28T03:45:48,153 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-28T03:45:48,155 Created temporary directory: /tmp/pip-ephem-wheel-cache-g0zcxk_a 2026-10-28T03:45:48,177 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-28T03:45:48,180 2 location(s) to search for versions of orfdata: 2026-10-28T03:45:48,180 * https://pypi.org/simple/orfdata/ 2026-10-28T03:45:48,180 * https://www.piwheels.org/simple/orfdata/ 2026-10-28T03:45:48,181 Fetching project page and analyzing links: https://pypi.org/simple/orfdata/ 2026-10-28T03:45:48,182 Getting page https://pypi.org/simple/orfdata/ 2026-10-28T03:45:48,183 Found index url https://pypi.org/simple 2026-10-28T03:45:48,333 Fetched page https://pypi.org/simple/orfdata/ as application/vnd.pypi.simple.v1+json 2026-10-28T03:45:48,346 Skipping link: No binaries permitted for orfdata: 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Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/0d/2b/8a1cf6202277071564f33ec9b1c23f9169b59d6b24aaaaeb07114d584f39/orfdata-0.38.2-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,397 Found link https://files.pythonhosted.org/packages/31/c7/6cbf4bd3b6313d41d9f9fe8f64318f40651c61ad793fcf2f554dd4d6bebd/orfdata-0.38.2.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.38.2 2026-10-28T03:45:48,397 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/ee/a3/b89e60a0cbec810ca17422aec8a680bffd57c39a70b985913dad447bdae1/orfdata-0.39.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,398 Found link https://files.pythonhosted.org/packages/d7/c8/f6f8144382cbb4f97023936babb7b072de0e25128d9181c8114b2ca06e83/orfdata-0.39.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.39.0 2026-10-28T03:45:48,399 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/4b/6b/0b41720d0bdf51527920d20c2bdac7ee80329a458e6a685f4cfcce82040f/orfdata-0.39.1-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,400 Found link https://files.pythonhosted.org/packages/c7/73/787b01d73cbd236688fc5aa5a27a87330445cdd616c30b78841163e6ff7d/orfdata-0.39.1.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.39.1 2026-10-28T03:45:48,401 Skipping link: No binaries permitted for orfdata: https://files.pythonhosted.org/packages/99/28/439d153b8b62273349b84ad0039cb3c954c37ac29810a727c88500535886/orfdata-0.40.0-py3-none-any.whl (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,401 Found link https://files.pythonhosted.org/packages/1f/99/bca943d4a01f16a07e1e19d9d2fea7a98ca63ac775cb62b4631efb291023/orfdata-0.40.0.tar.gz (from https://pypi.org/simple/orfdata/) (requires-python:>=3.11), version: 0.40.0 2026-10-28T03:45:48,402 Fetching project page and analyzing links: https://www.piwheels.org/simple/orfdata/ 2026-10-28T03:45:48,403 Getting page https://www.piwheels.org/simple/orfdata/ 2026-10-28T03:45:48,404 Found index url https://www.piwheels.org/simple 2026-10-28T03:45:48,592 Fetched page https://www.piwheels.org/simple/orfdata/ as text/html 2026-10-28T03:45:48,603 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.39.1-py3-none-any.whl#sha256=2a5c2768701ca636d511a0f4cc9ca8877d919d65843817481bc08504b9726fcd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,603 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.39.0-py3-none-any.whl#sha256=2842885510203652476dfa8cb15d3a018ee725203d7d55addb369c76fa935553 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,604 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.38.2-py3-none-any.whl#sha256=04f2870e2f5a0bc80370305fe7850ddce27fd32ab98827cadf2bb041074e1e17 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,604 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.38.1-py3-none-any.whl#sha256=e11d2bb3fb10e4197496e4372bf9aae5ad10cf62f136b0a00b7ba0d08f408e45 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,605 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.37.0-py3-none-any.whl#sha256=7b081819b628134550a9900557206e6b3ea600f3900c3ad0e830ad4f676354e4 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,605 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.36.0-py3-none-any.whl#sha256=05a9e84fb23e55c171e2b64a94ccdb3fcaca34ab7f2e36cb9245bbca150b7460 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,606 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.35.0-py3-none-any.whl#sha256=bbbf4e552150417fb384c8a699142328e0145b5ff9d2ce4f2ac00c429522037b (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,606 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.34.1-py3-none-any.whl#sha256=9b84448b6d1fb76a8177077e023e7ca40997eea9c7d30cf8d9cbfc4cd43443c0 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.11) 2026-10-28T03:45:48,607 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.34.0-py3-none-any.whl#sha256=01f80cbc623e5cd74226db0a76fdf3de75c6d177105d5b48b432811ced5bab28 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T03:45:48,608 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.33.0-py3-none-any.whl#sha256=9e382036ebffd685420cbf7cc2b2ec6e013c9f92e734b45208ed5d58abfa0113 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T03:45:48,608 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.32.0-py3-none-any.whl#sha256=9abb770a7b4c89a3296ff04854f1aace3ecf7c2e2cd4a0fffcb75839b309c8ad (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T03:45:48,609 Skipping link: No binaries permitted for orfdata: https://archive1.piwheels.org/simple/orfdata/orfdata-0.31.0-py3-none-any.whl#sha256=7598690474f6698ab3beecac966df858d1100dbd6fa083c47deac54041ecebfa (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T03:45:48,609 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.30.0-py3-none-any.whl#sha256=61decb0293b92c1a9797112f682ca8a89087e52bf1aabf4052374820d8461ba9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T03:45:48,610 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.29.0-py3-none-any.whl#sha256=1e7f9dafbee2f86a5965b15c0b8a0e01eca6e0b1bc8f0f69678f17b1492d428e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T03:45:48,610 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.28.0-py3-none-any.whl#sha256=23e8fc88e29ea6703984fb8c729de332527b3667c5becff1aaa627f0499336d3 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T03:45:48,611 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.27.1-py3-none-any.whl#sha256=3a0f09acc954353ba946a2543f2c9f5e9d6a396c1ab5c116b2c56be2e205b65b (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T03:45:48,612 Skipping link: No binaries permitted for orfdata: 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https://www.piwheels.org/simple/orfdata/orfdata-0.3.0-py3-none-any.whl#sha256=50842b5d601681d2d383b9606e337fb2b83af7c2bbbd6979e61f543c1a1651bd (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T03:45:48,620 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.2.0-py3-none-any.whl#sha256=a889faefe720028ad527c5374560c0105d7d523a59d934e2df48a81a4d3afaf9 (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T03:45:48,620 Skipping link: No binaries permitted for orfdata: https://www.piwheels.org/simple/orfdata/orfdata-0.1.0-py3-none-any.whl#sha256=15ac8bf705aaa4a152b713902cdb680ae29105f8302c3bcb9c1be544506ff01e (from https://www.piwheels.org/simple/orfdata/) (requires-python:>=3.9) 2026-10-28T03:45:48,621 Skipping link: not a file: https://www.piwheels.org/simple/orfdata/ 2026-10-28T03:45:48,621 Skipping link: not a file: https://pypi.org/simple/orfdata/ 2026-10-28T03:45:48,645 Given no hashes to check 1 links for project 'orfdata': discarding no candidates 2026-10-28T03:45:48,662 Collecting orfdata==0.40.0 2026-10-28T03:45:48,665 Created temporary directory: /tmp/pip-unpack-73_z97_f 2026-10-28T03:45:48,814 Downloading orfdata-0.40.0.tar.gz (3.6 MB) 2026-10-28T03:45:50,121 Added orfdata==0.40.0 from https://files.pythonhosted.org/packages/1f/99/bca943d4a01f16a07e1e19d9d2fea7a98ca63ac775cb62b4631efb291023/orfdata-0.40.0.tar.gz to build tracker '/tmp/pip-build-tracker-gfk4yshh' 2026-10-28T03:45:50,127 Created temporary directory: /tmp/pip-build-env-hymgzdlp 2026-10-28T03:45:50,131 Installing build dependencies: started 2026-10-28T03:45:50,133 Running command pip subprocess to install build dependencies 2026-10-28T03:45:51,302 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-10-28T03:45:51,762 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-10-28T03:45:51,786 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-10-28T03:45:53,588 Collecting setuptools>=77 2026-10-28T03:45:53,589 Obtaining dependency information for setuptools>=77 from https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata 2026-10-28T03:45:53,604 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata (6.6 kB) 2026-10-28T03:45:53,843 Collecting wheel 2026-10-28T03:45:53,845 Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata 2026-10-28T03:45:53,859 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB) 2026-10-28T03:45:54,044 Collecting packaging>=24.0 2026-10-28T03:45:54,046 Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata 2026-10-28T03:45:54,061 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB) 2026-10-28T03:45:54,256 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-28T03:45:54,278 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-28T03:45:54,362 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-10-28T03:45:54,398 Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB) 2026-10-28T03:45:54,428 Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB) 2026-10-28T03:45:54,527 Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB) 2026-10-28T03:45:57,332 Installing collected packages: setuptools, packaging, wheel 2026-10-28T03:46:00,145 Creating /tmp/pip-build-env-hymgzdlp/overlay/local/bin 2026-10-28T03:46:00,147 changing mode of /tmp/pip-build-env-hymgzdlp/overlay/local/bin/wheel to 755 2026-10-28T03:46:00,168 Successfully installed packaging-26.3 setuptools-84.2.1 wheel-0.48.0 2026-10-28T03:46:00,469 Installing build dependencies: finished with status 'done' 2026-10-28T03:46:00,476 Getting requirements to build wheel: started 2026-10-28T03:46:00,477 Running command Getting requirements to build wheel 2026-10-28T03:46:01,196 running egg_info 2026-10-28T03:46:01,202 writing orfdata.egg-info/PKG-INFO 2026-10-28T03:46:01,211 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-28T03:46:01,213 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-28T03:46:01,218 writing requirements to orfdata.egg-info/requires.txt 2026-10-28T03:46:01,219 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-28T03:46:01,253 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-28T03:46:01,273 reading manifest template 'MANIFEST.in' 2026-10-28T03:46:01,829 adding license file 'LICENSE' 2026-10-28T03:46:01,848 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-28T03:46:01,947 Getting requirements to build wheel: finished with status 'done' 2026-10-28T03:46:01,950 Created temporary directory: /tmp/pip-modern-metadata-iwxklbwt 2026-10-28T03:46:01,953 Preparing metadata (pyproject.toml): started 2026-10-28T03:46:01,954 Running command Preparing metadata (pyproject.toml) 2026-10-28T03:46:02,623 running dist_info 2026-10-28T03:46:02,634 creating /tmp/pip-modern-metadata-iwxklbwt/orfdata.egg-info 2026-10-28T03:46:02,635 writing /tmp/pip-modern-metadata-iwxklbwt/orfdata.egg-info/PKG-INFO 2026-10-28T03:46:02,643 writing dependency_links to /tmp/pip-modern-metadata-iwxklbwt/orfdata.egg-info/dependency_links.txt 2026-10-28T03:46:02,645 writing entry points to /tmp/pip-modern-metadata-iwxklbwt/orfdata.egg-info/entry_points.txt 2026-10-28T03:46:02,650 writing requirements to /tmp/pip-modern-metadata-iwxklbwt/orfdata.egg-info/requires.txt 2026-10-28T03:46:02,651 writing top-level names to /tmp/pip-modern-metadata-iwxklbwt/orfdata.egg-info/top_level.txt 2026-10-28T03:46:02,653 writing manifest file '/tmp/pip-modern-metadata-iwxklbwt/orfdata.egg-info/SOURCES.txt' 2026-10-28T03:46:02,683 reading manifest file '/tmp/pip-modern-metadata-iwxklbwt/orfdata.egg-info/SOURCES.txt' 2026-10-28T03:46:02,685 reading manifest template 'MANIFEST.in' 2026-10-28T03:46:03,237 adding license file 'LICENSE' 2026-10-28T03:46:03,251 writing manifest file '/tmp/pip-modern-metadata-iwxklbwt/orfdata.egg-info/SOURCES.txt' 2026-10-28T03:46:03,253 creating '/tmp/pip-modern-metadata-iwxklbwt/orfdata-0.40.0.dist-info' 2026-10-28T03:46:03,381 Preparing metadata (pyproject.toml): finished with status 'done' 2026-10-28T03:46:03,386 Source in /tmp/pip-wheel-ayo4qops/orfdata_f62e3d2a854546cdb06ecbe01633de81 has version 0.40.0, which satisfies requirement orfdata==0.40.0 from https://files.pythonhosted.org/packages/1f/99/bca943d4a01f16a07e1e19d9d2fea7a98ca63ac775cb62b4631efb291023/orfdata-0.40.0.tar.gz 2026-10-28T03:46:03,387 Removed orfdata==0.40.0 from https://files.pythonhosted.org/packages/1f/99/bca943d4a01f16a07e1e19d9d2fea7a98ca63ac775cb62b4631efb291023/orfdata-0.40.0.tar.gz from build tracker '/tmp/pip-build-tracker-gfk4yshh' 2026-10-28T03:46:03,394 Created temporary directory: /tmp/pip-unpack-cx7v99vk 2026-10-28T03:46:03,394 Building wheels for collected packages: orfdata 2026-10-28T03:46:03,398 Created temporary directory: /tmp/pip-wheel-e5ly8bzn 2026-10-28T03:46:03,399 Destination directory: /tmp/pip-wheel-e5ly8bzn 2026-10-28T03:46:03,401 Building wheel for orfdata (pyproject.toml): started 2026-10-28T03:46:03,402 Running command Building wheel for orfdata (pyproject.toml) 2026-10-28T03:46:04,057 running bdist_wheel 2026-10-28T03:46:04,075 running build 2026-10-28T03:46:04,076 running build_py 2026-10-28T03:46:04,083 creating build/lib/orfdata 2026-10-28T03:46:04,085 copying orfdata/numeric_vector.py -> build/lib/orfdata 2026-10-28T03:46:04,087 copying orfdata/__init__.py -> build/lib/orfdata 2026-10-28T03:46:04,089 copying orfdata/evidence.py -> build/lib/orfdata 2026-10-28T03:46:04,091 copying orfdata/dataset.py -> build/lib/orfdata 2026-10-28T03:46:04,094 copying orfdata/datasets.py -> build/lib/orfdata 2026-10-28T03:46:04,097 copying orfdata/catalog.py -> build/lib/orfdata 2026-10-28T03:46:04,100 copying orfdata/evidence_summary.py -> build/lib/orfdata 2026-10-28T03:46:04,102 copying orfdata/measurements.py -> build/lib/orfdata 2026-10-28T03:46:04,105 copying orfdata/viral_registry.py -> build/lib/orfdata 2026-10-28T03:46:04,107 copying orfdata/genomes_cli.py -> build/lib/orfdata 2026-10-28T03:46:04,109 copying orfdata/reference_ledger.py -> build/lib/orfdata 2026-10-28T03:46:04,111 copying orfdata/artifact_archives.py -> build/lib/orfdata 2026-10-28T03:46:04,114 copying orfdata/net.py -> build/lib/orfdata 2026-10-28T03:46:04,115 copying orfdata/build.py -> build/lib/orfdata 2026-10-28T03:46:04,118 copying orfdata/liftover.py -> build/lib/orfdata 2026-10-28T03:46:04,120 copying orfdata/search_reference.py -> build/lib/orfdata 2026-10-28T03:46:04,123 copying orfdata/viral_cli.py -> build/lib/orfdata 2026-10-28T03:46:04,125 copying orfdata/_structure.py -> build/lib/orfdata 2026-10-28T03:46:04,127 copying orfdata/catalog_manifest.py -> build/lib/orfdata 2026-10-28T03:46:04,129 copying orfdata/reference.py -> build/lib/orfdata 2026-10-28T03:46:04,132 copying orfdata/reference_table.py -> build/lib/orfdata 2026-10-28T03:46:04,134 copying orfdata/refseq.py -> build/lib/orfdata 2026-10-28T03:46:04,136 copying orfdata/cli.py -> build/lib/orfdata 2026-10-28T03:46:04,139 copying orfdata/download_cli.py -> build/lib/orfdata 2026-10-28T03:46:04,141 copying orfdata/fasta.py -> build/lib/orfdata 2026-10-28T03:46:04,143 copying orfdata/sequence.py -> build/lib/orfdata 2026-10-28T03:46:04,145 copying orfdata/record_sources.py -> build/lib/orfdata 2026-10-28T03:46:04,164 copying orfdata/catalogs.py -> build/lib/orfdata 2026-10-28T03:46:04,167 copying orfdata/viral_coverage.py -> build/lib/orfdata 2026-10-28T03:46:04,169 copying orfdata/reference_mapping.py -> build/lib/orfdata 2026-10-28T03:46:04,171 copying orfdata/viral.py -> build/lib/orfdata 2026-10-28T03:46:04,173 copying orfdata/genbank.py -> build/lib/orfdata 2026-10-28T03:46:04,175 copying orfdata/pairing.py -> build/lib/orfdata 2026-10-28T03:46:04,178 copying orfdata/liftover_cli.py -> build/lib/orfdata 2026-10-28T03:46:04,180 copying orfdata/initiation_context.py -> build/lib/orfdata 2026-10-28T03:46:04,182 copying orfdata/gtf.py -> build/lib/orfdata 2026-10-28T03:46:04,185 copying orfdata/catalog_cli.py -> build/lib/orfdata 2026-10-28T03:46:04,187 copying orfdata/viral_annotation.py -> build/lib/orfdata 2026-10-28T03:46:04,189 copying orfdata/version.py -> build/lib/orfdata 2026-10-28T03:46:04,191 copying orfdata/_pinned_genome.py -> build/lib/orfdata 2026-10-28T03:46:04,193 copying orfdata/model.py -> build/lib/orfdata 2026-10-28T03:46:04,196 copying orfdata/rna.py -> build/lib/orfdata 2026-10-28T03:46:04,198 copying orfdata/genomes.py -> build/lib/orfdata 2026-10-28T03:46:04,200 copying orfdata/viral_subsets.py -> build/lib/orfdata 2026-10-28T03:46:04,202 copying orfdata/cli_output.py -> build/lib/orfdata 2026-10-28T03:46:04,204 copying orfdata/proteome.py -> build/lib/orfdata 2026-10-28T03:46:04,208 copying orfdata/dataset_cli.py -> build/lib/orfdata 2026-10-28T03:46:04,210 copying orfdata/viral_panel.py -> build/lib/orfdata 2026-10-28T03:46:04,213 copying orfdata/downloads.py -> build/lib/orfdata 2026-10-28T03:46:04,215 copying orfdata/proteome_cli.py -> build/lib/orfdata 2026-10-28T03:46:04,217 copying orfdata/install.py -> build/lib/orfdata 2026-10-28T03:46:04,220 creating build/lib/orfdata/sources 2026-10-28T03:46:04,221 copying orfdata/sources/__init__.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,223 copying orfdata/sources/riborf.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,226 copying orfdata/sources/kaabinejadian.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,228 copying orfdata/sources/pfizer_vendor.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,230 copying orfdata/sources/pfizer_rna.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,232 copying orfdata/sources/ncorf_mammals.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,235 copying orfdata/sources/pfizer_definitions.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,237 copying orfdata/sources/pfizer_dataset.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,240 copying orfdata/sources/wang.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,242 copying orfdata/sources/pfizer_lineage.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,245 copying orfdata/sources/pfizer_native.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,247 copying orfdata/sources/peptideatlas.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,250 copying orfdata/sources/pfizer_attribution.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,252 copying orfdata/sources/pfizer_evidence.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,254 copying orfdata/sources/pfizer.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,257 copying orfdata/sources/copy.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,259 copying orfdata/sources/pfizer_queries.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,262 copying orfdata/sources/ingolia.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,264 copying orfdata/sources/openprot.py -> build/lib/orfdata/sources 2026-10-28T03:46:04,268 running egg_info 2026-10-28T03:46:04,277 writing orfdata.egg-info/PKG-INFO 2026-10-28T03:46:04,286 writing dependency_links to orfdata.egg-info/dependency_links.txt 2026-10-28T03:46:04,287 writing entry points to orfdata.egg-info/entry_points.txt 2026-10-28T03:46:04,292 writing requirements to orfdata.egg-info/requires.txt 2026-10-28T03:46:04,293 writing top-level names to orfdata.egg-info/top_level.txt 2026-10-28T03:46:04,314 reading manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-28T03:46:04,333 reading manifest template 'MANIFEST.in' 2026-10-28T03:46:04,892 adding license file 'LICENSE' 2026-10-28T03:46:04,910 writing manifest file 'orfdata.egg-info/SOURCES.txt' 2026-10-28T03:46:04,926 creating build/lib/orfdata/data/uorf-evidence 2026-10-28T03:46:04,927 copying orfdata/data/uorf-evidence/catalog.json.gz -> build/lib/orfdata/data/uorf-evidence 2026-10-28T03:46:04,942 copying orfdata/data/uorf-evidence/manifest.json -> build/lib/orfdata/data/uorf-evidence 2026-10-28T03:46:04,944 copying orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-28T03:46:04,946 copying orfdata/data/uorf-evidence/NOTICE.txt -> build/lib/orfdata/data/uorf-evidence 2026-10-28T03:46:04,948 creating build/lib/orfdata/data/orf-evidence 2026-10-28T03:46:04,949 copying orfdata/data/orf-evidence/catalog.json.gz -> build/lib/orfdata/data/orf-evidence 2026-10-28T03:46:04,979 copying orfdata/data/orf-evidence/manifest.json -> build/lib/orfdata/data/orf-evidence 2026-10-28T03:46:04,981 copying orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-28T03:46:04,984 copying orfdata/data/orf-evidence/NOTICE.txt -> build/lib/orfdata/data/orf-evidence 2026-10-28T03:46:04,986 creating build/lib/orfdata/data/ires 2026-10-28T03:46:04,987 copying orfdata/data/ires/rfam-15.1-human-ires.json -> build/lib/orfdata/data/ires 2026-10-28T03:46:04,990 creating build/lib/orfdata/data/viral 2026-10-28T03:46:04,991 copying orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/lib/orfdata/data/viral 2026-10-28T03:46:04,994 copying orfdata/data/viral/subsets.yaml -> build/lib/orfdata/data/viral 2026-10-28T03:46:04,997 copying orfdata/data/viral/NOTICE.md -> build/lib/orfdata/data/viral 2026-10-28T03:46:04,999 copying orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/lib/orfdata/data/viral 2026-10-28T03:46:05,002 copying orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/lib/orfdata/data/viral 2026-10-28T03:46:05,006 copying orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/lib/orfdata/data/viral 2026-10-28T03:46:05,009 copying orfdata/data/datasets.json -> build/lib/orfdata/data 2026-10-28T03:46:05,014 copying orfdata/data/catalogs.json -> build/lib/orfdata/data 2026-10-28T03:46:05,018 copying orfdata/data/chains.json -> build/lib/orfdata/data 2026-10-28T03:46:05,021 copying orfdata/data/genomes.json -> build/lib/orfdata/data 2026-10-28T03:46:05,044 installing to build/bdist.linux-armv7l/wheel 2026-10-28T03:46:05,045 running install 2026-10-28T03:46:05,067 running install_lib 2026-10-28T03:46:05,073 creating build/bdist.linux-armv7l/wheel 2026-10-28T03:46:05,076 creating build/bdist.linux-armv7l/wheel/orfdata 2026-10-28T03:46:05,078 copying build/lib/orfdata/numeric_vector.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,080 copying build/lib/orfdata/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,083 copying build/lib/orfdata/evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,086 copying build/lib/orfdata/dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,089 copying build/lib/orfdata/datasets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,092 copying build/lib/orfdata/catalog.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,099 copying build/lib/orfdata/evidence_summary.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,107 copying build/lib/orfdata/measurements.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,110 copying build/lib/orfdata/viral_registry.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,113 copying build/lib/orfdata/genomes_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,115 copying build/lib/orfdata/reference_ledger.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,118 copying build/lib/orfdata/artifact_archives.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,120 copying build/lib/orfdata/net.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,123 copying build/lib/orfdata/build.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,126 copying build/lib/orfdata/liftover.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,129 copying build/lib/orfdata/search_reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,131 copying build/lib/orfdata/viral_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,134 copying build/lib/orfdata/_structure.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,137 creating build/bdist.linux-armv7l/wheel/orfdata/sources 2026-10-28T03:46:05,139 copying build/lib/orfdata/sources/__init__.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,141 copying build/lib/orfdata/sources/riborf.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,144 copying build/lib/orfdata/sources/kaabinejadian.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,147 copying build/lib/orfdata/sources/pfizer_vendor.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,150 copying build/lib/orfdata/sources/pfizer_rna.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,152 copying build/lib/orfdata/sources/ncorf_mammals.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,155 copying build/lib/orfdata/sources/pfizer_definitions.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,157 copying build/lib/orfdata/sources/pfizer_dataset.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,160 copying build/lib/orfdata/sources/wang.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,163 copying build/lib/orfdata/sources/pfizer_lineage.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,165 copying build/lib/orfdata/sources/pfizer_native.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,168 copying build/lib/orfdata/sources/peptideatlas.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,171 copying build/lib/orfdata/sources/pfizer_attribution.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,173 copying build/lib/orfdata/sources/pfizer_evidence.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,176 copying build/lib/orfdata/sources/pfizer.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,179 copying build/lib/orfdata/sources/copy.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,182 copying build/lib/orfdata/sources/pfizer_queries.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,184 copying build/lib/orfdata/sources/ingolia.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,186 copying build/lib/orfdata/sources/openprot.py -> build/bdist.linux-armv7l/wheel/./orfdata/sources 2026-10-28T03:46:05,188 copying build/lib/orfdata/catalog_manifest.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,191 copying build/lib/orfdata/reference.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,193 copying build/lib/orfdata/reference_table.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,195 copying build/lib/orfdata/refseq.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,197 copying build/lib/orfdata/cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,200 copying build/lib/orfdata/download_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,202 copying build/lib/orfdata/fasta.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,205 creating build/bdist.linux-armv7l/wheel/orfdata/data 2026-10-28T03:46:05,206 copying build/lib/orfdata/data/catalogs.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-28T03:46:05,210 creating build/bdist.linux-armv7l/wheel/orfdata/data/viral 2026-10-28T03:46:05,211 copying build/lib/orfdata/data/viral/hpv16-refseq-CDS.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T03:46:05,213 copying build/lib/orfdata/data/viral/subsets.yaml -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T03:46:05,215 copying build/lib/orfdata/data/viral/NOTICE.md -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T03:46:05,217 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T03:46:05,220 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T03:46:05,223 copying build/lib/orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv -> build/bdist.linux-armv7l/wheel/./orfdata/data/viral 2026-10-28T03:46:05,226 copying build/lib/orfdata/data/chains.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-28T03:46:05,229 creating build/bdist.linux-armv7l/wheel/orfdata/data/uorf-evidence 2026-10-28T03:46:05,230 copying build/lib/orfdata/data/uorf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-28T03:46:05,243 copying build/lib/orfdata/data/uorf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-28T03:46:05,245 copying build/lib/orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-28T03:46:05,246 copying build/lib/orfdata/data/uorf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/uorf-evidence 2026-10-28T03:46:05,249 creating build/bdist.linux-armv7l/wheel/orfdata/data/ires 2026-10-28T03:46:05,250 copying build/lib/orfdata/data/ires/rfam-15.1-human-ires.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/ires 2026-10-28T03:46:05,252 copying build/lib/orfdata/data/genomes.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-28T03:46:05,255 creating build/bdist.linux-armv7l/wheel/orfdata/data/orf-evidence 2026-10-28T03:46:05,256 copying build/lib/orfdata/data/orf-evidence/catalog.json.gz -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-28T03:46:05,276 copying build/lib/orfdata/data/orf-evidence/manifest.json -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-28T03:46:05,278 copying build/lib/orfdata/data/orf-evidence/AUTHOR-LICENSE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-28T03:46:05,280 copying build/lib/orfdata/data/orf-evidence/NOTICE.txt -> build/bdist.linux-armv7l/wheel/./orfdata/data/orf-evidence 2026-10-28T03:46:05,282 copying build/lib/orfdata/data/datasets.json -> build/bdist.linux-armv7l/wheel/./orfdata/data 2026-10-28T03:46:05,286 copying build/lib/orfdata/sequence.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,289 copying build/lib/orfdata/record_sources.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,292 copying build/lib/orfdata/catalogs.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,294 copying build/lib/orfdata/viral_coverage.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,297 copying build/lib/orfdata/reference_mapping.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,299 copying build/lib/orfdata/viral.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,302 copying build/lib/orfdata/genbank.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,304 copying build/lib/orfdata/pairing.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,307 copying build/lib/orfdata/liftover_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,309 copying build/lib/orfdata/initiation_context.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,312 copying build/lib/orfdata/gtf.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,314 copying build/lib/orfdata/catalog_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,317 copying build/lib/orfdata/viral_annotation.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,320 copying build/lib/orfdata/version.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,322 copying build/lib/orfdata/_pinned_genome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,324 copying build/lib/orfdata/model.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,327 copying build/lib/orfdata/rna.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,330 copying build/lib/orfdata/genomes.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,332 copying build/lib/orfdata/viral_subsets.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,334 copying build/lib/orfdata/cli_output.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,337 copying build/lib/orfdata/proteome.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,341 copying build/lib/orfdata/dataset_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,343 copying build/lib/orfdata/viral_panel.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,347 copying build/lib/orfdata/downloads.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,349 copying build/lib/orfdata/proteome_cli.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,352 copying build/lib/orfdata/install.py -> build/bdist.linux-armv7l/wheel/./orfdata 2026-10-28T03:46:05,354 running install_egg_info 2026-10-28T03:46:05,359 Copying orfdata.egg-info to build/bdist.linux-armv7l/wheel/./orfdata-0.40.0-py3.11.egg-info 2026-10-28T03:46:05,372 running install_scripts 2026-10-28T03:46:05,384 creating build/bdist.linux-armv7l/wheel/orfdata-0.40.0.dist-info/WHEEL 2026-10-28T03:46:05,388 creating '/tmp/pip-wheel-e5ly8bzn/.tmp-nicw2qvv/orfdata-0.40.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-10-28T03:46:05,392 adding 'orfdata/__init__.py' 2026-10-28T03:46:05,393 adding 'orfdata/_pinned_genome.py' 2026-10-28T03:46:05,395 adding 'orfdata/_structure.py' 2026-10-28T03:46:05,397 adding 'orfdata/artifact_archives.py' 2026-10-28T03:46:05,401 adding 'orfdata/build.py' 2026-10-28T03:46:05,411 adding 'orfdata/catalog.py' 2026-10-28T03:46:05,413 adding 'orfdata/catalog_cli.py' 2026-10-28T03:46:05,415 adding 'orfdata/catalog_manifest.py' 2026-10-28T03:46:05,418 adding 'orfdata/catalogs.py' 2026-10-28T03:46:05,421 adding 'orfdata/cli.py' 2026-10-28T03:46:05,422 adding 'orfdata/cli_output.py' 2026-10-28T03:46:05,427 adding 'orfdata/dataset.py' 2026-10-28T03:46:05,430 adding 'orfdata/dataset_cli.py' 2026-10-28T03:46:05,434 adding 'orfdata/datasets.py' 2026-10-28T03:46:05,437 adding 'orfdata/download_cli.py' 2026-10-28T03:46:05,441 adding 'orfdata/downloads.py' 2026-10-28T03:46:05,444 adding 'orfdata/evidence.py' 2026-10-28T03:46:05,447 adding 'orfdata/evidence_summary.py' 2026-10-28T03:46:05,449 adding 'orfdata/fasta.py' 2026-10-28T03:46:05,452 adding 'orfdata/genbank.py' 2026-10-28T03:46:05,455 adding 'orfdata/genomes.py' 2026-10-28T03:46:05,457 adding 'orfdata/genomes_cli.py' 2026-10-28T03:46:05,460 adding 'orfdata/gtf.py' 2026-10-28T03:46:05,463 adding 'orfdata/initiation_context.py' 2026-10-28T03:46:05,466 adding 'orfdata/install.py' 2026-10-28T03:46:05,470 adding 'orfdata/liftover.py' 2026-10-28T03:46:05,473 adding 'orfdata/liftover_cli.py' 2026-10-28T03:46:05,477 adding 'orfdata/measurements.py' 2026-10-28T03:46:05,486 adding 'orfdata/model.py' 2026-10-28T03:46:05,489 adding 'orfdata/net.py' 2026-10-28T03:46:05,492 adding 'orfdata/numeric_vector.py' 2026-10-28T03:46:05,495 adding 'orfdata/pairing.py' 2026-10-28T03:46:05,520 adding 'orfdata/proteome.py' 2026-10-28T03:46:05,524 adding 'orfdata/proteome_cli.py' 2026-10-28T03:46:05,527 adding 'orfdata/record_sources.py' 2026-10-28T03:46:05,531 adding 'orfdata/reference.py' 2026-10-28T03:46:05,534 adding 'orfdata/reference_ledger.py' 2026-10-28T03:46:05,536 adding 'orfdata/reference_mapping.py' 2026-10-28T03:46:05,538 adding 'orfdata/reference_table.py' 2026-10-28T03:46:05,540 adding 'orfdata/refseq.py' 2026-10-28T03:46:05,543 adding 'orfdata/rna.py' 2026-10-28T03:46:05,545 adding 'orfdata/search_reference.py' 2026-10-28T03:46:05,547 adding 'orfdata/sequence.py' 2026-10-28T03:46:05,549 adding 'orfdata/version.py' 2026-10-28T03:46:05,551 adding 'orfdata/viral.py' 2026-10-28T03:46:05,555 adding 'orfdata/viral_annotation.py' 2026-10-28T03:46:05,557 adding 'orfdata/viral_cli.py' 2026-10-28T03:46:05,560 adding 'orfdata/viral_coverage.py' 2026-10-28T03:46:05,567 adding 'orfdata/viral_panel.py' 2026-10-28T03:46:05,570 adding 'orfdata/viral_registry.py' 2026-10-28T03:46:05,572 adding 'orfdata/viral_subsets.py' 2026-10-28T03:46:05,576 adding 'orfdata/data/catalogs.json' 2026-10-28T03:46:05,577 adding 'orfdata/data/chains.json' 2026-10-28T03:46:05,586 adding 'orfdata/data/datasets.json' 2026-10-28T03:46:05,589 adding 'orfdata/data/genomes.json' 2026-10-28T03:46:05,592 adding 'orfdata/data/ires/rfam-15.1-human-ires.json' 2026-10-28T03:46:05,594 adding 'orfdata/data/orf-evidence/AUTHOR-LICENSE.txt' 2026-10-28T03:46:05,595 adding 'orfdata/data/orf-evidence/NOTICE.txt' 2026-10-28T03:46:05,749 adding 'orfdata/data/orf-evidence/catalog.json.gz' 2026-10-28T03:46:05,759 adding 'orfdata/data/orf-evidence/manifest.json' 2026-10-28T03:46:05,761 adding 'orfdata/data/uorf-evidence/AUTHOR-LICENSE.txt' 2026-10-28T03:46:05,762 adding 'orfdata/data/uorf-evidence/NOTICE.txt' 2026-10-28T03:46:05,842 adding 'orfdata/data/uorf-evidence/catalog.json.gz' 2026-10-28T03:46:05,847 adding 'orfdata/data/uorf-evidence/manifest.json' 2026-10-28T03:46:05,849 adding 'orfdata/data/viral/NOTICE.md' 2026-10-28T03:46:05,852 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-coverage.tsv' 2026-10-28T03:46:05,857 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-genbank.tsv' 2026-10-28T03:46:05,862 adding 'orfdata/data/viral/gdc-grch38-d1-vd1-pave.tsv' 2026-10-28T03:46:05,863 adding 'orfdata/data/viral/hpv16-refseq-CDS.json.gz' 2026-10-28T03:46:05,865 adding 'orfdata/data/viral/subsets.yaml' 2026-10-28T03:46:05,867 adding 'orfdata/sources/__init__.py' 2026-10-28T03:46:05,869 adding 'orfdata/sources/copy.py' 2026-10-28T03:46:05,871 adding 'orfdata/sources/ingolia.py' 2026-10-28T03:46:05,874 adding 'orfdata/sources/kaabinejadian.py' 2026-10-28T03:46:05,876 adding 'orfdata/sources/ncorf_mammals.py' 2026-10-28T03:46:05,878 adding 'orfdata/sources/openprot.py' 2026-10-28T03:46:05,880 adding 'orfdata/sources/peptideatlas.py' 2026-10-28T03:46:05,882 adding 'orfdata/sources/pfizer.py' 2026-10-28T03:46:05,885 adding 'orfdata/sources/pfizer_attribution.py' 2026-10-28T03:46:05,887 adding 'orfdata/sources/pfizer_dataset.py' 2026-10-28T03:46:05,889 adding 'orfdata/sources/pfizer_definitions.py' 2026-10-28T03:46:05,891 adding 'orfdata/sources/pfizer_evidence.py' 2026-10-28T03:46:05,893 adding 'orfdata/sources/pfizer_lineage.py' 2026-10-28T03:46:05,896 adding 'orfdata/sources/pfizer_native.py' 2026-10-28T03:46:05,898 adding 'orfdata/sources/pfizer_queries.py' 2026-10-28T03:46:05,899 adding 'orfdata/sources/pfizer_rna.py' 2026-10-28T03:46:05,902 adding 'orfdata/sources/pfizer_vendor.py' 2026-10-28T03:46:05,904 adding 'orfdata/sources/riborf.py' 2026-10-28T03:46:05,907 adding 'orfdata/sources/wang.py' 2026-10-28T03:46:05,911 adding 'orfdata-0.40.0.dist-info/licenses/LICENSE' 2026-10-28T03:46:05,913 adding 'orfdata-0.40.0.dist-info/METADATA' 2026-10-28T03:46:05,914 adding 'orfdata-0.40.0.dist-info/WHEEL' 2026-10-28T03:46:05,915 adding 'orfdata-0.40.0.dist-info/entry_points.txt' 2026-10-28T03:46:05,916 adding 'orfdata-0.40.0.dist-info/top_level.txt' 2026-10-28T03:46:05,918 adding 'orfdata-0.40.0.dist-info/RECORD' 2026-10-28T03:46:05,944 removing build/bdist.linux-armv7l/wheel 2026-10-28T03:46:06,067 Building wheel for orfdata (pyproject.toml): finished with status 'done' 2026-10-28T03:46:06,114 Created wheel for orfdata: filename=orfdata-0.40.0-py3-none-any.whl size=2280306 sha256=849904ecbdbcb5565dee505b3119e03414111667000b603517be370a24059322 2026-10-28T03:46:06,116 Stored in directory: /tmp/pip-ephem-wheel-cache-g0zcxk_a/wheels/1c/a8/65/d1c108f07d52a25f6020fe6a0520b917d9e0680f7b43148afa 2026-10-28T03:46:06,131 Successfully built orfdata 2026-10-28T03:46:06,200 Removed build tracker: '/tmp/pip-build-tracker-gfk4yshh'