2026-10-28T05:38:50,340 Created temporary directory: /tmp/pip-ephem-wheel-cache-c2lfq1wt
2026-10-28T05:38:50,342 Created temporary directory: /tmp/pip-build-tracker-wmkvz8y0
2026-10-28T05:38:50,342 Initialized build tracking at /tmp/pip-build-tracker-wmkvz8y0
2026-10-28T05:38:50,343 Created build tracker: /tmp/pip-build-tracker-wmkvz8y0
2026-10-28T05:38:50,343 Entered build tracker: /tmp/pip-build-tracker-wmkvz8y0
2026-10-28T05:38:50,344 Created temporary directory: /tmp/pip-wheel-tg7bqd53
2026-10-28T05:38:50,347 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-10-28T05:38:50,350 Created temporary directory: /tmp/pip-ephem-wheel-cache-8a18nyd1
2026-10-28T05:38:50,371 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-10-28T05:38:50,375 2 location(s) to search for versions of oncoref:
2026-10-28T05:38:50,375 * https://pypi.org/simple/oncoref/
2026-10-28T05:38:50,375 * https://www.piwheels.org/simple/oncoref/
2026-10-28T05:38:50,376 Fetching project page and analyzing links: https://pypi.org/simple/oncoref/
2026-10-28T05:38:50,376 Getting page https://pypi.org/simple/oncoref/
2026-10-28T05:38:50,378 Found index url https://pypi.org/simple
2026-10-28T05:38:50,568 Fetched page https://pypi.org/simple/oncoref/ as application/vnd.pypi.simple.v1+json
2026-10-28T05:38:50,648   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/98/3c08853ca8c6e4f7ea1625192d883f4890b4482814b60c92972610af6a91/oncoref-1.6.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,650   Found link https://files.pythonhosted.org/packages/d3/fa/b1f2479c8c9b44597623ab898f37be9f1c317250cac13115edb09adf0bd0/oncoref-1.6.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.6.0
2026-10-28T05:38:50,652   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/00/bc/d076f0b5f3ab5d26840cd8eee073af59210bb90aba8a7826d64980c08e70/oncoref-1.7.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,653   Found link https://files.pythonhosted.org/packages/6b/4f/2b9be7b2858be7ca1c850ea67261cfe41c9595b7d57ed818b20af88c815c/oncoref-1.7.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.7.0
2026-10-28T05:38:50,653   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/3d/cf/214dbe1e3f3ca56d6354d7f2f87283085238025685b7287be5a3020db87c/oncoref-1.8.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,654   Found link https://files.pythonhosted.org/packages/10/a1/9b3e573b2e9ce5903eef398c68d06cd3d1425a88c87c3f5d8dbe79cbfb3c/oncoref-1.8.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.0
2026-10-28T05:38:50,655   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/56/b4/103c9511736de31d6182b47aaf4f03da47c52933be96ea7a060ad7478ae3/oncoref-1.8.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,656   Found link https://files.pythonhosted.org/packages/21/3e/8080dbac7eaa58029775dd4937cb7dc70d1e65b52e358ccb75b5dd8ed63e/oncoref-1.8.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.1
2026-10-28T05:38:50,657   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/02/4f/03495de60734a5fb8a50476fd036af4b0262949e609827f759349cc1ff6b/oncoref-1.8.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,658   Found link https://files.pythonhosted.org/packages/e6/18/5ee9311af10f46d71490d6563884c80cb170f106e31164d3a2cf7e47d1e8/oncoref-1.8.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.2
2026-10-28T05:38:50,658   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/9b/4f/60a3e4e56d57a916f462597f08c5c4915e19cb97fc1cd0b85c110e41659e/oncoref-1.8.3-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,660   Found link https://files.pythonhosted.org/packages/e7/7d/22a2797b33413bfe0f46708f396b9b1f9ad9dbc253d94fcbeb6ccf9ad5ff/oncoref-1.8.3.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.3
2026-10-28T05:38:50,660   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ca/bb/0981e424fd20641c70c1607dc7e707ff53036f90e7482b18ef4f2b100bba/oncoref-1.8.4-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,661   Found link https://files.pythonhosted.org/packages/da/8f/e45e879798fcad2b21996a64d69c0034e947ca8c07b2668b484580bcccd2/oncoref-1.8.4.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.4
2026-10-28T05:38:50,662   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b8/72/7cb35a084c989d648fc0ef20be3c0b9d888092e0e13aabc75710797dfbbd/oncoref-1.8.5-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,663   Found link https://files.pythonhosted.org/packages/0a/e2/de65c5e1582fe009b3f640e94e6ecd5cf2f139d490750374cdad3af0e14c/oncoref-1.8.5.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.5
2026-10-28T05:38:50,663   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/71/92/3cd4d589831ccb90b12732347718e54d84097a6c780ced1810f52e3b302a/oncoref-1.8.6-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,664   Found link https://files.pythonhosted.org/packages/fe/29/0640ff92bcb51841b69a4d04ccf94a5173a18ee10c54786b959026ca4362/oncoref-1.8.6.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.6
2026-10-28T05:38:50,665   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f2/29/f869b37c956b8836b9c9b45e89ab7dad98a93270e6bd395b45a7ca5657ad/oncoref-1.8.7-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,666   Found link https://files.pythonhosted.org/packages/62/2d/434129dfb4157eb2bf8c4f89ff3f5c74e65b2a62e619fcd1154388d70aa4/oncoref-1.8.7.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.7
2026-10-28T05:38:50,666   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/06/89/59174cc23b5ca908c5eed6c89f147d28265749466c702e7c45a91004c4d2/oncoref-1.8.8-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,667   Found link https://files.pythonhosted.org/packages/f4/fd/e8f16e540188ecdfa8d331e209374ed0c47ef44e27eae34fc4a262b6e49a/oncoref-1.8.8.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.8
2026-10-28T05:38:50,668   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/21/11/175fa74783a3e4662792af69e82e51a7a991e710858efaeb92a8695d8fda/oncoref-1.8.9-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,669   Found link https://files.pythonhosted.org/packages/9f/cb/7d81ce8e2dab2710860db8ae18d8f1c3a34052d74f01459afa76de5af686/oncoref-1.8.9.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.9
2026-10-28T05:38:50,670   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/f8/12/a1f0c9d212afc8cd24b0451f400a187bdd47f18e3cad7f29f2777550ae1a/oncoref-1.8.10-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,671   Found link https://files.pythonhosted.org/packages/77/61/378430e4677aa8b166ce384cbe1d113e10edaa5f59609a77f4c766be2571/oncoref-1.8.10.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.10
2026-10-28T05:38:50,671   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/3d/c5e014ef25909aa0d1066921219dd488045d0d6b5016550231966030cf12/oncoref-1.8.11-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,672   Found link https://files.pythonhosted.org/packages/32/11/bd521deea2d84a375a14221e236bac5683bed470cccee72d352e054794e3/oncoref-1.8.11.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.11
2026-10-28T05:38:50,673   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/78/7b/c22cc3d95ab5b76edffb7cb157822e8af21bcb9f4b5558027675cd684cbf/oncoref-1.8.12-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,674   Found link https://files.pythonhosted.org/packages/d1/d9/ed6fbdf2ac825e2be372fbd326ca99009195e27aad5f2d597579a2aca8c4/oncoref-1.8.12.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.12
2026-10-28T05:38:50,674   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/5e/38/d4f824676b3d280e159182422711e46a9be12a1078869b3b3da846a959d6/oncoref-1.8.13-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,675   Found link https://files.pythonhosted.org/packages/53/53/a8ca36b70ca14b5654f882f5a6fec1709a385bc2cc18d4bde37a2f32d454/oncoref-1.8.13.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.13
2026-10-28T05:38:50,676   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2f/c1/703bd890ae830651eae083a090278ba8254ac89bae1c0bfefed061c3e2eb/oncoref-1.8.14-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,677   Found link https://files.pythonhosted.org/packages/72/05/f82628c00d880f035d82572d1160a43c00ca2e7c45b010b4a9f300a5a863/oncoref-1.8.14.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.14
2026-10-28T05:38:50,681   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/ac/42/91b2b04455fb29d40afb47dc7ee2eae30218a24c4d540d95191d31f6f98e/oncoref-1.8.15-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,682   Found link https://files.pythonhosted.org/packages/26/8a/9cb4754077d37b89ed3ee3781cffdb03040d90286aaaedacba8cb238d7c3/oncoref-1.8.15.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.15
2026-10-28T05:38:50,683   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/3f/1af50bb6d208ada32a29b7e3ed29169932b97542b48e765c1d96130b7f3d/oncoref-1.8.16-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,684   Found link https://files.pythonhosted.org/packages/b0/d3/a5bd8fc8f94176955d736efbdd944f84c9b72fe55cb88580ba9ab8ed5e04/oncoref-1.8.16.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.16
2026-10-28T05:38:50,684   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/53/77/d24a0f29e452b83e5d6a1bfb366c72b8407bc7505d94280ca3ba609de07e/oncoref-1.8.17-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,685   Found link https://files.pythonhosted.org/packages/c1/e7/7f753f3a4b044b3f3bc8f75b75ef24df1c9b77d3f0742ee37fc243441830/oncoref-1.8.17.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.17
2026-10-28T05:38:50,686   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/04/55/5f2c1936263bdbe9a95a7c82d673eae8724b3eb1b99d4c1c33eadfc6edf5/oncoref-1.8.18-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,687   Found link https://files.pythonhosted.org/packages/3a/54/ceb46bd314647d4f44c1a83e06ca8c15118ca03c20b8111a3f2defb56c6c/oncoref-1.8.18.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.18
2026-10-28T05:38:50,688   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/07/35/638b350ebd4fd975c88adb9168c250b482cf549a77381cced479cdf3923f/oncoref-1.8.19-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,689   Found link https://files.pythonhosted.org/packages/39/5a/c1460247c124e495fc20ae3e76a760ee67da5f7263531a1093ae4cdc1983/oncoref-1.8.19.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.19
2026-10-28T05:38:50,689   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/eb/2d/584fe29a9ae1a336ec8dc1dadc08e60e036de296b703c428b69aafb97ee7/oncoref-1.8.20-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,690   Found link https://files.pythonhosted.org/packages/aa/5b/9be05673420aae6512388fb70ff3b3802ca0bca46179299c93e9bdea7cb1/oncoref-1.8.20.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.20
2026-10-28T05:38:50,691   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/c2/b8/d13577ba1cd9a054203201a66d94d70c8c71156e5afaf85c557c52a8a4c8/oncoref-1.8.21-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,692   Found link https://files.pythonhosted.org/packages/f6/9d/ca143333eade742f336f48670b06ee9849c2c31d9322c5c7bb6979a191a3/oncoref-1.8.21.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.21
2026-10-28T05:38:50,692   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/59/bd/c385a7916a14b417f607eecb73034e821165e8f650435947ecf8845c5161/oncoref-1.8.22-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,693   Found link https://files.pythonhosted.org/packages/a7/cc/f9b0c987a30c7928b99e165f2bd778a677eb1433eb0802911d6678139aeb/oncoref-1.8.22.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.22
2026-10-28T05:38:50,694   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/e7/f2/ae5d03f1bf678a753916310b281effcbc4cf19a4e0e6995437966ad6ac91/oncoref-1.8.23-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,695   Found link https://files.pythonhosted.org/packages/be/8c/f6a66a8ae2ba39778734de5548a77246995f30c636670ff2ca38094ff59e/oncoref-1.8.23.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.23
2026-10-28T05:38:50,696   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/28/8d/ca3b2c8c719845b8c38ff91118723bb2c965155ac0a49af2ff8ceff50a56/oncoref-1.8.24-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,697   Found link https://files.pythonhosted.org/packages/62/f6/e9a386e5a93bd80d065addcc4050fefd3bb6e8b55b75ea3ba88025f95255/oncoref-1.8.24.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.24
2026-10-28T05:38:50,697   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/8d/48/dd730548afc982ad049e59c8084f8847a0c49e3d0e288d7b0c299abdad9b/oncoref-1.8.25-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,698   Found link https://files.pythonhosted.org/packages/fe/48/42ff82844f2c14e04799c0441651a2c9b147da3707e4924129d0352b5525/oncoref-1.8.25.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.25
2026-10-28T05:38:50,699   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/15/fc/76fa123a1303b6db49cade8bf9985e206e992b14ad3d49b446acf8ee9516/oncoref-1.8.26-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,700   Found link https://files.pythonhosted.org/packages/e7/5c/785ef9ba1884cb96cc5c5bb24da2b2b7d5836404cefa2cc6b9589707d264/oncoref-1.8.26.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.26
2026-10-28T05:38:50,701   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/1f/6e/9d45c29e74006d28dd4da8b329a4b939dd7bfa89496792f969392734b44a/oncoref-1.8.27-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:50,702   Found link https://files.pythonhosted.org/packages/b1/35/566b316d8325fc6cf07c3cb72c7432a37302396da59a1b78dbd75c3c8e2b/oncoref-1.8.27.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9), version: 1.8.27
2026-10-28T05:38:50,702   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/97/00/35532e9bdea879c0aa0ccabcdb2cd219ebb85a68b2217df7ba7b4e690ae7/oncoref-1.8.28-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.9)
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2026-10-28T05:38:51,020   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/b4/8b/618977de3e903aacc8a9a4ec191c563ea2b559bd9ce01a98fe422fa1acca/oncoref-1.17.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.10)
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2026-10-28T05:38:51,022   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/2d/17/0e88f8964e9dea826f0d46f8eacffbdf99615b743c77c23904a39958e07b/oncoref-1.18.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.10)
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2026-10-28T05:38:51,023   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/99/3c/cbb33cae0783c2f0023b2fa6bf7d60b883d38e30565f5de700668863c006/oncoref-1.19.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.10)
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2026-10-28T05:38:51,025   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/26/a3/cf99f0839a71bd80d3367e6dd018722ba54f8ffd868504fdcfe17313116e/oncoref-1.19.1-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,026   Found link https://files.pythonhosted.org/packages/77/30/d7b3d1cd0782f02c583d0c482f67f04028fcd8e29a3de9d4cb9ffb1e219c/oncoref-1.19.1.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.10), version: 1.19.1
2026-10-28T05:38:51,026   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/a8/28/671b244f87728bf9ed84b8971a7b3b7ee289631ff252470ea0dabc99ae52/oncoref-1.19.2-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,027   Found link https://files.pythonhosted.org/packages/3a/68/b186033d4fe356517cc676879c62a6710f1c8ec1b6da98e3ffdef78b23d7/oncoref-1.19.2.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.10), version: 1.19.2
2026-10-28T05:38:51,028   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/49/84/af2017f3a673ae1e8cb445b6acb9912dd30e51ab240692cab7c5abefd373/oncoref-1.20.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,028   Found link https://files.pythonhosted.org/packages/2e/b8/6845f042379d65b6d40f32f39f72e7f6373327897326b2a573e64e0aba18/oncoref-1.20.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.10), version: 1.20.0
2026-10-28T05:38:51,029   Skipping link: No binaries permitted for oncoref: https://files.pythonhosted.org/packages/41/6d/9fd8669004f5a93bf0fbd1e4d2c0b5fccc064a9e8e7e107d7586932185db/oncoref-1.21.0-py3-none-any.whl (from https://pypi.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,030   Found link https://files.pythonhosted.org/packages/9c/2d/f1021f0a3e64a04e7b7299b6fc43f13e7f4e0dda067393d2b1567cccba44/oncoref-1.21.0.tar.gz (from https://pypi.org/simple/oncoref/) (requires-python:>=3.10), version: 1.21.0
2026-10-28T05:38:51,031 Fetching project page and analyzing links: https://www.piwheels.org/simple/oncoref/
2026-10-28T05:38:51,032 Getting page https://www.piwheels.org/simple/oncoref/
2026-10-28T05:38:51,034 Found index url https://www.piwheels.org/simple
2026-10-28T05:38:51,224 Fetched page https://www.piwheels.org/simple/oncoref/ as text/html
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2026-10-28T05:38:51,288   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.19.2-py3-none-any.whl#sha256=d0228e152135e346e08093f4145f5ebd73e7b8ac5109395bca6028117935965b (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,289   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.19.1-py3-none-any.whl#sha256=358faf27b5929e422bf6f6f770d369dd23c4fe5bde4e8d0939d18a4dbfc17590 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,289   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.19.0-py3-none-any.whl#sha256=21e4f8d8481d65e0a5057bcf740394afc22412233a0c0224d82b83be7e92054d (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,290   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.18.0-py3-none-any.whl#sha256=54ff78fb2a42a9425b76ea09b8a12303975c3030497fbb95db2bd3a8b16f96c9 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,291   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.17.0-py3-none-any.whl#sha256=dc6b25a6d097b49638c656f95173f6aba2b31d4d33af18b17fbac1f7921171ec (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,291   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.16.0-py3-none-any.whl#sha256=c1023f51c3519dea6588d7e96ce8fd7a5002cc1ffe4f6d8d362a67e828e23b4e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,292   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.15.0-py3-none-any.whl#sha256=61dc461f36c0116dd43ab462dc2cfca2a220c39b9766b87ff2ae52d39bca1945 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,292   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.14.0-py3-none-any.whl#sha256=1a17f8902c5c8b262094d77e4fb9f5430e3bf1498038b981022e6efe3b3c6fc0 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,293   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.13.0-py3-none-any.whl#sha256=569182d7a89c032cc5c832e1dba3ab43a606bf657fce4b31b88218276638eeb3 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,293   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.12.0-py3-none-any.whl#sha256=65d210f539585464ce8a171a9154eaebe7f7e3b99adda5a218fcc54ad8a003d9 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,294   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.11.0-py3-none-any.whl#sha256=21ada285caf20dc186e8f32f62b28c0fe5f280f9c35b7ad307eaf285087f1472 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,295   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.10.0-py3-none-any.whl#sha256=643b705c73ae93287cf717081b2fbdb5f8503219cfb56c6764779749075b9b41 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,295   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.9.19-py3-none-any.whl#sha256=8e0ba9e70d3c727f0bff9b50dab713c4c610a9d0cf0ac333f5d776c47d6a4283 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,296   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.9.18-py3-none-any.whl#sha256=55ed72825f4739dff128703aac82c0e01a6299cf72b9322b5cf30a8534d0eb7f (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,297   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.9.17-py3-none-any.whl#sha256=315fa293712efe5aeec7e1aff2b45d48cb9fc96b917a91fec4d24d0c178d4020 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,297   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.9.16-py3-none-any.whl#sha256=c68acd744c76718ac30123414b2145ed53649cba38f7cfa17fdbb1c6fed6782d (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,298   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.9.15-py3-none-any.whl#sha256=136b7eeff15c13f4c36561349173be370b709bd4e29d63b6b78a86724624ba37 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,298   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.9.14-py3-none-any.whl#sha256=15a23500de897db77370f42fb01282b4f20cf99a19aa9c6a96fa55939e4b3e04 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
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2026-10-28T05:38:51,300   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.9.12-py3-none-any.whl#sha256=b772859d2f46e21ede3a4a16deca1dcc9bafed6f541d5f62dbaf7fbb206b4137 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,300   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.9.11-py3-none-any.whl#sha256=7d57dc1684053e1f4b5bfab831c6ee40fd086ceab0a019b5e14d865b53690abb (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.10)
2026-10-28T05:38:51,301   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.9.10-py3-none-any.whl#sha256=e387319bddc94351951a47a6911fb9480c47805fdd43ee28e3c11305de100e1c (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,301   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.9.9-py3-none-any.whl#sha256=7054ad15a89a4df1ef892a15992796d22846a791ec3905c2a5c995d0437de12b (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,301   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.211-py3-none-any.whl#sha256=7883f6125a64d14d4e5f087472e3a2be4530fbf01604392a26deb43f9e0d1046 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,302   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.210-py3-none-any.whl#sha256=a48be70d409e88fa467d2cdb03c6bfa060126b24c6db0c7c8c5f254f5d69b005 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
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2026-10-28T05:38:51,303   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.208-py3-none-any.whl#sha256=fd7463eae779dca872e82f29fc67ce4c8bbd241acb4476fd65902bb276a289ec (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,304   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.207-py3-none-any.whl#sha256=101968277dc4116303b4b76a778b35bf11987dd3842db7821860709712dd98ec (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,304   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.206-py3-none-any.whl#sha256=f4b936fcaf51dbfc599bf691c57ab610e9f0c1638f75db934385ebc7f5eed71d (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,305   Skipping link: No binaries permitted for oncoref: https://www.piwheels.org/simple/oncoref/oncoref-1.8.205-py3-none-any.whl#sha256=d76fd01512929bb11f5708de43c4b013649c1098f65940bac9a57add930cfdc1 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
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2026-10-28T05:38:51,406   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.24-py3-none-any.whl#sha256=37eddc72a25836c04689e807b2e937964e7758be69a3c63ef6f43b079edd274b (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,406   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.23-py3-none-any.whl#sha256=93e12c751d36e6067e12446d95075d3f1529e62cabab5ddafc06717951f4b978 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,407   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.22-py3-none-any.whl#sha256=f9f6af90f23f91ed83e606231a0b8288143792f632998acf8e42adb9b41fa572 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,407   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.21-py3-none-any.whl#sha256=ac7131b0f8f46c73d142fc08042a64e251ad3df564bfc62308d462affc18f008 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
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2026-10-28T05:38:51,409   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.19-py3-none-any.whl#sha256=bbbd40de31c902830f47fa96432cc1984e1164d334e95a40633e18ec8caaa41e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,409   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.18-py3-none-any.whl#sha256=91f223a369ce125813e0c188cafd3277343fd2ca1caa4d34a5394ba1cb195781 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,410   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.17-py3-none-any.whl#sha256=5fa3e3356c1574425d42aebe7d135c933ff623b539736554634a762eeaab4a29 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,410   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.16-py3-none-any.whl#sha256=9defcd77c3360e0675a10c0b8de4a1784c19f227a985079b95e21e462de63e97 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,411   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.15-py3-none-any.whl#sha256=4dcd40c2e5c10b8f8be0d8df8489b5f05153d465eb43ddf7f9dc158bbe6b1de3 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,411   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.14-py3-none-any.whl#sha256=ac41cf84ca97c695a15f40326738750e2762e39f366bf99300777803874b26da (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,412   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.13-py3-none-any.whl#sha256=91c3e1fa8448033a913075559a2ee2b76fcbad64e20aeb7696484a9a5619dbef (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,412   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.12-py3-none-any.whl#sha256=2a0e59477b8939fc63d4a78f31b0b793fb2f49ea2aab861d853fa8479ccf9608 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,413   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.11-py3-none-any.whl#sha256=602ac0deb73739e65dfb65105b23357a94a67eb9e1faac0880bff5203ed4a818 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,414   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.10-py3-none-any.whl#sha256=3e789fd35641073e8afc8885dcef12d74a2323c2e0c8dad7b5e369392675e83a (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,414   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.9-py3-none-any.whl#sha256=2415de57054126a885d64b626bbb12657ce55d0791a686b7aba85fd8b784d399 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,415   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.8-py3-none-any.whl#sha256=f1b7351039ce534abc9d36a03b53fd9479b1629b4a6fd8698bc500162f1cd362 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,415   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.7-py3-none-any.whl#sha256=84f80af8afa25d02579e67983b74fd2e515df1ce6d0cb602ecb6808e994f8f63 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,416   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.6-py3-none-any.whl#sha256=460f281fc846e410a5992e3a87193febdfac8bf81f3e5497a5e5d72ae58176bf (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,417   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.5-py3-none-any.whl#sha256=cfedb20aa2c2593dfb010bc01a13d5b6c732ec5cf013fd70b65c71d1adb71f7e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,417   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.4-py3-none-any.whl#sha256=d649c7a749c099fe67033ecbdbafe4bf8bcd93bd71d9830ce2a6127a1c093cad (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,417   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.3-py3-none-any.whl#sha256=bf75676ac99a0d1c144249b8cf320ac292b65716c9ffdc50ad27b55db1153821 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,418   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.2-py3-none-any.whl#sha256=9f47ca1a637e6255fbf29fd252834c85e5d19238a980add71843cd860b39777e (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,418   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.1-py3-none-any.whl#sha256=12f0eb28c115080796010095a4032b844d9ea4383bc0ea2e2b75a3e5f21c9392 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,419   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.8.0-py3-none-any.whl#sha256=6f9be6d1511d7e84166b02f2cd219b977025db68916073cb4bd1ebdfc8919914 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,419   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.7.0-py3-none-any.whl#sha256=249750fecb30a99d715c221ca1ca76a4ff790891f0051782cd528395d14db6ed (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,420   Skipping link: No binaries permitted for oncoref: https://archive1.piwheels.org/simple/oncoref/oncoref-1.6.0-py3-none-any.whl#sha256=e8383754a89924adfeb524e978f9d8e304fe5f179989515ee7ee4ae3eaa3d997 (from https://www.piwheels.org/simple/oncoref/) (requires-python:>=3.9)
2026-10-28T05:38:51,421 Skipping link: not a file: https://www.piwheels.org/simple/oncoref/
2026-10-28T05:38:51,422 Skipping link: not a file: https://pypi.org/simple/oncoref/
2026-10-28T05:38:51,468 Given no hashes to check 1 links for project 'oncoref': discarding no candidates
2026-10-28T05:38:51,487 Collecting oncoref==1.21.0
2026-10-28T05:38:51,490   Created temporary directory: /tmp/pip-unpack-esss_8hj
2026-10-28T05:38:51,639   Downloading oncoref-1.21.0.tar.gz (27.0 MB)
2026-10-28T05:38:55,633   Added oncoref==1.21.0 from https://files.pythonhosted.org/packages/9c/2d/f1021f0a3e64a04e7b7299b6fc43f13e7f4e0dda067393d2b1567cccba44/oncoref-1.21.0.tar.gz to build tracker '/tmp/pip-build-tracker-wmkvz8y0'
2026-10-28T05:38:55,640   Created temporary directory: /tmp/pip-build-env-0e4pkzxh
2026-10-28T05:38:55,645   Installing build dependencies: started
2026-10-28T05:38:55,646   Running command pip subprocess to install build dependencies
2026-10-28T05:38:56,807   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-10-28T05:38:57,282   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-10-28T05:38:57,305   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-10-28T05:38:59,100   Collecting setuptools>=77.0.0
2026-10-28T05:38:59,101     Obtaining dependency information for setuptools>=77.0.0 from https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata
2026-10-28T05:38:59,115     Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl.metadata (6.6 kB)
2026-10-28T05:38:59,352   Collecting wheel
2026-10-28T05:38:59,353     Obtaining dependency information for wheel from https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata
2026-10-28T05:38:59,368     Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl.metadata (2.3 kB)
2026-10-28T05:38:59,554   Collecting packaging>=24.0
2026-10-28T05:38:59,555     Obtaining dependency information for packaging>=24.0 from https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata
2026-10-28T05:38:59,570     Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl.metadata (3.6 kB)
2026-10-28T05:38:59,762   Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB)
2026-10-28T05:38:59,788   Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB)
2026-10-28T05:38:59,868   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB)
2026-10-28T05:38:59,906   Using cached https://www.piwheels.org/simple/wheel/wheel-0.48.0-py3-none-any.whl (33 kB)
2026-10-28T05:38:59,936   Using cached https://www.piwheels.org/simple/packaging/packaging-26.3-py3-none-any.whl (129 kB)
2026-10-28T05:39:00,016   Using cached https://www.piwheels.org/simple/setuptools/setuptools-84.2.1-py3-none-any.whl (876 kB)
2026-10-28T05:39:02,801   Installing collected packages: setuptools, packaging, wheel
2026-10-28T05:39:05,563     Creating /tmp/pip-build-env-0e4pkzxh/overlay/local/bin
2026-10-28T05:39:05,565     changing mode of /tmp/pip-build-env-0e4pkzxh/overlay/local/bin/wheel to 755
2026-10-28T05:39:05,586   Successfully installed packaging-26.3 setuptools-84.2.1 wheel-0.48.0
2026-10-28T05:39:05,872   Installing build dependencies: finished with status 'done'
2026-10-28T05:39:05,878   Getting requirements to build wheel: started
2026-10-28T05:39:05,880   Running command Getting requirements to build wheel
2026-10-28T05:39:06,579   running egg_info
2026-10-28T05:39:06,585   writing oncoref.egg-info/PKG-INFO
2026-10-28T05:39:06,592   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-10-28T05:39:06,594   writing entry points to oncoref.egg-info/entry_points.txt
2026-10-28T05:39:06,598   writing requirements to oncoref.egg-info/requires.txt
2026-10-28T05:39:06,600   writing top-level names to oncoref.egg-info/top_level.txt
2026-10-28T05:39:06,652   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-10-28T05:39:06,680   reading manifest template 'MANIFEST.in'
2026-10-28T05:39:06,781   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-10-28T05:39:06,783   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-10-28T05:39:06,786   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-10-28T05:39:06,788   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-10-28T05:39:06,790   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-10-28T05:39:06,793   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-10-28T05:39:06,793   adding license file 'LICENSE'
2026-10-28T05:39:06,819   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-10-28T05:39:06,919   Getting requirements to build wheel: finished with status 'done'
2026-10-28T05:39:06,922   Created temporary directory: /tmp/pip-modern-metadata-mnxkv9k1
2026-10-28T05:39:06,925   Preparing metadata (pyproject.toml): started
2026-10-28T05:39:06,926   Running command Preparing metadata (pyproject.toml)
2026-10-28T05:39:07,575   running dist_info
2026-10-28T05:39:07,585   creating /tmp/pip-modern-metadata-mnxkv9k1/oncoref.egg-info
2026-10-28T05:39:07,586   writing /tmp/pip-modern-metadata-mnxkv9k1/oncoref.egg-info/PKG-INFO
2026-10-28T05:39:07,593   writing dependency_links to /tmp/pip-modern-metadata-mnxkv9k1/oncoref.egg-info/dependency_links.txt
2026-10-28T05:39:07,595   writing entry points to /tmp/pip-modern-metadata-mnxkv9k1/oncoref.egg-info/entry_points.txt
2026-10-28T05:39:07,599   writing requirements to /tmp/pip-modern-metadata-mnxkv9k1/oncoref.egg-info/requires.txt
2026-10-28T05:39:07,600   writing top-level names to /tmp/pip-modern-metadata-mnxkv9k1/oncoref.egg-info/top_level.txt
2026-10-28T05:39:07,601   writing manifest file '/tmp/pip-modern-metadata-mnxkv9k1/oncoref.egg-info/SOURCES.txt'
2026-10-28T05:39:07,652   reading manifest file '/tmp/pip-modern-metadata-mnxkv9k1/oncoref.egg-info/SOURCES.txt'
2026-10-28T05:39:07,654   reading manifest template 'MANIFEST.in'
2026-10-28T05:39:07,751   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-10-28T05:39:07,753   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-10-28T05:39:07,755   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-10-28T05:39:07,757   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-10-28T05:39:07,758   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-10-28T05:39:07,760   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-10-28T05:39:07,760   adding license file 'LICENSE'
2026-10-28T05:39:07,779   writing manifest file '/tmp/pip-modern-metadata-mnxkv9k1/oncoref.egg-info/SOURCES.txt'
2026-10-28T05:39:07,781   creating '/tmp/pip-modern-metadata-mnxkv9k1/oncoref-1.21.0.dist-info'
2026-10-28T05:39:07,908   Preparing metadata (pyproject.toml): finished with status 'done'
2026-10-28T05:39:07,913   Source in /tmp/pip-wheel-tg7bqd53/oncoref_c856a7b40c13438f912da68c1c4adbed has version 1.21.0, which satisfies requirement oncoref==1.21.0 from https://files.pythonhosted.org/packages/9c/2d/f1021f0a3e64a04e7b7299b6fc43f13e7f4e0dda067393d2b1567cccba44/oncoref-1.21.0.tar.gz
2026-10-28T05:39:07,914   Removed oncoref==1.21.0 from https://files.pythonhosted.org/packages/9c/2d/f1021f0a3e64a04e7b7299b6fc43f13e7f4e0dda067393d2b1567cccba44/oncoref-1.21.0.tar.gz from build tracker '/tmp/pip-build-tracker-wmkvz8y0'
2026-10-28T05:39:07,921 Created temporary directory: /tmp/pip-unpack-9ljgt4y0
2026-10-28T05:39:07,922 Building wheels for collected packages: oncoref
2026-10-28T05:39:07,926   Created temporary directory: /tmp/pip-wheel-lb1cvzy2
2026-10-28T05:39:07,927   Destination directory: /tmp/pip-wheel-lb1cvzy2
2026-10-28T05:39:07,929   Building wheel for oncoref (pyproject.toml): started
2026-10-28T05:39:07,931   Running command Building wheel for oncoref (pyproject.toml)
2026-10-28T05:39:08,569   running bdist_wheel
2026-10-28T05:39:08,587   running build
2026-10-28T05:39:08,587   running build_py
2026-10-28T05:39:08,596   creating build/lib/oncoref
2026-10-28T05:39:08,598   copying oncoref/mouse.py -> build/lib/oncoref
2026-10-28T05:39:08,600   copying oncoref/normal_expression_categories.py -> build/lib/oncoref
2026-10-28T05:39:08,603   copying oncoref/cta_peptides.py -> build/lib/oncoref
2026-10-28T05:39:08,605   copying oncoref/__init__.py -> build/lib/oncoref
2026-10-28T05:39:08,607   copying oncoref/expression_source_adapters.py -> build/lib/oncoref
2026-10-28T05:39:08,653   copying oncoref/gene_ids.py -> build/lib/oncoref
2026-10-28T05:39:08,658   copying oncoref/cta_curation_plots.py -> build/lib/oncoref
2026-10-28T05:39:08,663   copying oncoref/legacy.py -> build/lib/oncoref
2026-10-28T05:39:08,668   copying oncoref/cta_regen.py -> build/lib/oncoref
2026-10-28T05:39:08,675   copying oncoref/source_matrices.py -> build/lib/oncoref
2026-10-28T05:39:08,699   copying oncoref/catalog.py -> build/lib/oncoref
2026-10-28T05:39:08,702   copying oncoref/cta_membership.py -> build/lib/oncoref
2026-10-28T05:39:08,704   copying oncoref/protein_annotations.py -> build/lib/oncoref
2026-10-28T05:39:08,706   copying oncoref/genome.py -> build/lib/oncoref
2026-10-28T05:39:08,710   copying oncoref/compartment_rna_policy.py -> build/lib/oncoref
2026-10-28T05:39:08,714   copying oncoref/ici.py -> build/lib/oncoref
2026-10-28T05:39:08,719   copying oncoref/cta_quantitative.py -> build/lib/oncoref
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2026-10-28T05:39:08,741   copying oncoref/gse304066.py -> build/lib/oncoref
2026-10-28T05:39:08,743   copying oncoref/pfizer_canine_rna.py -> build/lib/oncoref
2026-10-28T05:39:08,744   copying oncoref/peptides.py -> build/lib/oncoref
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2026-10-28T05:39:08,749   copying oncoref/cta_provenance.py -> build/lib/oncoref
2026-10-28T05:39:08,751   copying oncoref/apd1.py -> build/lib/oncoref
2026-10-28T05:39:08,753   copying oncoref/expression_builders.py -> build/lib/oncoref
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2026-10-28T05:39:08,794   copying oncoref/cta_evidence_model.py -> build/lib/oncoref
2026-10-28T05:39:08,797   copying oncoref/cancer_ontology.py -> build/lib/oncoref
2026-10-28T05:39:08,799   copying oncoref/data_bundle.py -> build/lib/oncoref
2026-10-28T05:39:08,802   copying oncoref/cta_selection.py -> build/lib/oncoref
2026-10-28T05:39:08,804   copying oncoref/cta_normal_screen.py -> build/lib/oncoref
2026-10-28T05:39:08,806   copying oncoref/normal_tissues.py -> build/lib/oncoref
2026-10-28T05:39:08,809   copying oncoref/cell_rna_policy.py -> build/lib/oncoref
2026-10-28T05:39:08,811   copying oncoref/figure_style.py -> build/lib/oncoref
2026-10-28T05:39:08,814   copying oncoref/human_cta_snapshot.py -> build/lib/oncoref
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2026-10-28T05:39:08,824   copying oncoref/cta_research_policy.py -> build/lib/oncoref
2026-10-28T05:39:08,826   copying oncoref/cli.py -> build/lib/oncoref
2026-10-28T05:39:08,829   copying oncoref/normal_rna_review.py -> build/lib/oncoref
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2026-10-28T05:39:08,838   copying oncoref/cta_evidence_adapters.py -> build/lib/oncoref
2026-10-28T05:39:08,840   copying oncoref/protein_equivalence.py -> build/lib/oncoref
2026-10-28T05:39:08,842   copying oncoref/barkbase.py -> build/lib/oncoref
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2026-10-28T05:39:08,846   copying oncoref/canine.py -> build/lib/oncoref
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2026-10-28T05:39:08,875   copying oncoref/gene_matching.py -> build/lib/oncoref
2026-10-28T05:39:08,877   copying oncoref/pfizer_canine_protein.py -> build/lib/oncoref
2026-10-28T05:39:08,879   copying oncoref/representative_partitions.py -> build/lib/oncoref
2026-10-28T05:39:08,881   copying oncoref/human_protein_atlas.py -> build/lib/oncoref
2026-10-28T05:39:08,883   copying oncoref/human.py -> build/lib/oncoref
2026-10-28T05:39:08,885   copying oncoref/species_antigens.py -> build/lib/oncoref
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2026-10-28T05:39:08,892   copying oncoref/expression_engine.py -> build/lib/oncoref
2026-10-28T05:39:08,895   copying oncoref/cta_evidence_schema.py -> build/lib/oncoref
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2026-10-28T05:39:08,899   copying oncoref/rna_protein.py -> build/lib/oncoref
2026-10-28T05:39:08,902   copying oncoref/cancer_genes.py -> build/lib/oncoref
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2026-10-28T05:39:08,914   copying oncoref/gene_identity.py -> build/lib/oncoref
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2026-10-28T05:39:08,969   creating build/lib/oncoref/data
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2026-10-28T05:39:08,990   copying oncoref/data/driver-gene-evidence.csv -> build/lib/oncoref/data
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2026-10-28T05:39:09,010   copying oncoref/data/cancer-type-genes.csv -> build/lib/oncoref/data
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2026-10-28T05:39:09,018   copying oncoref/data/cancer-lineage-group-overrides.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,022   copying oncoref/data/ribosomal-protein-genes.csv -> build/lib/oncoref/data
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2026-10-28T05:39:09,032   copying oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,035   copying oncoref/data/cohort-registry.csv -> build/lib/oncoref/data
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2026-10-28T05:39:09,041   copying oncoref/data/cancer-testis-antigens.csv -> build/lib/oncoref/data
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2026-10-28T05:39:09,083   copying oncoref/data/rna-protein-hpa-prior-sources.csv -> build/lib/oncoref/data
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2026-10-28T05:39:09,176   copying oncoref/data/fusion-expression-effects.csv -> build/lib/oncoref/data
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2026-10-28T05:39:09,182   copying oncoref/data/cancer-driver-genes.csv -> build/lib/oncoref/data
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2026-10-28T05:39:09,191   copying oncoref/data/rna-protein-calibration-sources.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,194   copying oncoref/data/cta-candidate-references.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,197   copying oncoref/data/mitochondrial-genes.csv -> build/lib/oncoref/data
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2026-10-28T05:39:09,211   copying oncoref/data/cta-publication-sources.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,218   copying oncoref/data/cancer-frameshift-burden.csv -> build/lib/oncoref/data
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2026-10-28T05:39:09,284   copying oncoref/data/hpa-cancer-rna-cohorts.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,287   copying oncoref/data/cancer-ici-response.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,290   copying oncoref/data/hpa-cancer-crosswalk.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,293   copying oncoref/data/cancer-fusion-citation-audit.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,297   copying oncoref/data/cancer-type-registry.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,302   copying oncoref/data/cancer-tmb-source-audit.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,306   copying oncoref/data/proteoform-collapse-overrides.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,309   copying oncoref/data/housekeeping-genes.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,312   copying oncoref/data/numt-pseudogenes.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,315   copying oncoref/data/therapy-benefit-toxicity-evidence.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,318   copying oncoref/data/cancer-subtype-groupings.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,321   copying oncoref/data/cta-gene-publication-evidence.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,324   copying oncoref/data/cta-screen-results.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,370   copying oncoref/data/driver-variant-evidence.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,376   copying oncoref/data/cta-warning-reviews.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,378   copying oncoref/data/cta-antibody-adjudications.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,388   copying oncoref/data/ribosomal-protein-pseudogenes.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,393   copying oncoref/data/source-matrices.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,396   copying oncoref/data/proteoform-groups-genome.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,399   copying oncoref/data/cta-reviewed-evidence.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,402   copying oncoref/data/cancer-mismatch-repair-statuses.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,404   copying oncoref/data/cta-intake-identity-reviews.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,406   copying oncoref/data/cta-external-safety-reviews.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,408   copying oncoref/data/cancer-expression-source-candidates.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,411   copying oncoref/data/cta-donor-ihc.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,413   copying oncoref/data/censored-gene-reference-tpm.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,417   copying oncoref/data/proteoform-groups.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,420   copying oncoref/data/histone-genes.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,422   copying oncoref/data/cancer-key-genes.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,427   copying oncoref/data/degenerate-subtype-pairs.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,429   copying oncoref/data/hpa-safety-tissue-map.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,431   copying oncoref/data/cancer-key-gene-citation-audit.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,436   copying oncoref/data/cancer-reference-expression-availability.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,440   copying oncoref/data/rare-cancer-fusion-rules.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,443   copying oncoref/data/clean-tpm-censored-genes.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,460   copying oncoref/data/cancer-reference-sample-molecular-provenance.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,464   copying oncoref/data/cancer-tmb.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,468   copying oncoref/data/representative-source-adjudications.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,471   copying oncoref/data/cta-clinical-targets.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,475   copying oncoref/data/family-burden-map.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,478   copying oncoref/data/normal-tissue-mappings.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,486   copying oncoref/data/cta-trial-evidence.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,489   copying oncoref/data/cta-selection-sources.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,493   copying oncoref/data/cdna-identical-gene-groups.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,496   copying oncoref/data/cta-ihc-unreliable.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,498   copying oncoref/data/gse294016-sample-diagnoses.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,502   copying oncoref/data/disease-state-rules.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,504   copying oncoref/data/cancer-testis-antigens-extended.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,524   copying oncoref/data/cancer-ici-response-estimates.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,532   copying oncoref/data/small-noncoding-rnas.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,537   copying oncoref/data/cta-followup-reviews.csv -> build/lib/oncoref/data
2026-10-28T05:39:09,546   copying oncoref/data/cta-research-gene-sets.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,556   copying oncoref/data/cta-membership-gene-sets.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,596   copying oncoref/data/cta-selection-human.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,620   copying oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,631   copying oncoref/data/sequence-gene-rna-reviews.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,636   copying oncoref/data/external-ihc-evidence.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,644   copying oncoref/data/cancer-reference-expression-samples.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,652   copying oncoref/data/ncbi-entrez-gene-mappings.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,670   copying oncoref/data/rna-protein-calibration-samples.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,674   copying oncoref/data/rna-protein-hpa-priors.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,697   copying oncoref/data/target-gene-sets.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,798   copying oncoref/data/rna-protein-calibrations.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,941   copying oncoref/data/canonical-gene-space.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,952   copying oncoref/data/cta-quantitative-gene-sets.csv.gz -> build/lib/oncoref/data
2026-10-28T05:39:09,990   copying oncoref/data/expression_sources.yaml -> build/lib/oncoref/data
2026-10-28T05:39:09,994   copying oncoref/data/normal-tissue-taxonomy.yaml -> build/lib/oncoref/data
2026-10-28T05:39:09,998   creating build/lib/oncoref/data/species/dog
2026-10-28T05:39:09,999   copying oncoref/data/species/dog/expression_sources.yaml -> build/lib/oncoref/data/species/dog
2026-10-28T05:39:10,002   copying oncoref/data/species/dog/lineage_overlaps.json -> build/lib/oncoref/data/species/dog
2026-10-28T05:39:10,004   copying oncoref/data/species/dog/pfizer-dog-protein-samples.json -> build/lib/oncoref/data/species/dog
2026-10-28T05:39:10,008   copying oncoref/data/species/dog/bgee-srp009687-samples.json -> build/lib/oncoref/data/species/dog
2026-10-28T05:39:10,011   copying oncoref/data/species/dog/bgee-srp181218-samples.json -> build/lib/oncoref/data/species/dog
2026-10-28T05:39:10,016   copying oncoref/data/species/dog/assets.json -> build/lib/oncoref/data/species/dog
2026-10-28T05:39:10,019   copying oncoref/data/species/dog/barkbase-samples.json -> build/lib/oncoref/data/species/dog
2026-10-28T05:39:10,025   copying oncoref/data/species/dog/cta-evidence.json -> build/lib/oncoref/data/species/dog
2026-10-28T05:39:10,032   copying oncoref/data/hpa-cancer-sources.json -> build/lib/oncoref/data
2026-10-28T05:39:10,035   copying oncoref/data/normal-cell-sources.json -> build/lib/oncoref/data
2026-10-28T05:39:10,038   copying oncoref/data/cta-policy.json -> build/lib/oncoref/data
2026-10-28T05:39:10,041   copying oncoref/data/cta-selection.json -> build/lib/oncoref/data
2026-10-28T05:39:10,044   copying oncoref/data/protein-annotation-sources.json -> build/lib/oncoref/data
2026-10-28T05:39:10,046   copying oncoref/data/cta-intake-identity-snapshot.json -> build/lib/oncoref/data
2026-10-28T05:39:10,049   copying oncoref/data/cta-membership-paper-receipts.json -> build/lib/oncoref/data
2026-10-28T05:39:10,069   installing to build/bdist.linux-armv7l/wheel
2026-10-28T05:39:10,070   running install
2026-10-28T05:39:10,104   running install_lib
2026-10-28T05:39:10,112   creating build/bdist.linux-armv7l/wheel
2026-10-28T05:39:10,117   creating build/bdist.linux-armv7l/wheel/oncoref
2026-10-28T05:39:10,119   copying build/lib/oncoref/mouse.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,122   copying build/lib/oncoref/normal_expression_categories.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,125   copying build/lib/oncoref/cta_peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,128   copying build/lib/oncoref/__init__.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,131   copying build/lib/oncoref/expression_source_adapters.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,139   copying build/lib/oncoref/gene_ids.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,143   copying build/lib/oncoref/cta_curation_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,147   copying build/lib/oncoref/legacy.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,150   copying build/lib/oncoref/cta_regen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,154   copying build/lib/oncoref/source_matrices.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,157   copying build/lib/oncoref/catalog.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,161   copying build/lib/oncoref/cta_membership.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,163   copying build/lib/oncoref/protein_annotations.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,166   copying build/lib/oncoref/genome.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,169   copying build/lib/oncoref/compartment_rna_policy.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,171   copying build/lib/oncoref/ici.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,175   copying build/lib/oncoref/cta_quantitative.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,177   copying build/lib/oncoref/cta.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,181   copying build/lib/oncoref/expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,190   copying build/lib/oncoref/species_expression.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,193   copying build/lib/oncoref/gse304066.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,195   copying build/lib/oncoref/pfizer_canine_rna.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,197   copying build/lib/oncoref/peptides.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,199   copying build/lib/oncoref/samples.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,202   copying build/lib/oncoref/cta_provenance.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,205   copying build/lib/oncoref/apd1.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,207   copying build/lib/oncoref/expression_builders.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,215   copying build/lib/oncoref/_table_io.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,217   copying build/lib/oncoref/cta_gate_audit.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,219   copying build/lib/oncoref/_reference_sources.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,221   copying build/lib/oncoref/_downloads.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,223   copying build/lib/oncoref/incidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,226   copying build/lib/oncoref/data_manifest.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,229   copying build/lib/oncoref/load_dataset.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,232   copying build/lib/oncoref/hpa.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,234   copying build/lib/oncoref/cta_landscape.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,237   copying build/lib/oncoref/cta_funnel.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,240   copying build/lib/oncoref/cta_review.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,243   copying build/lib/oncoref/coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,246   copying build/lib/oncoref/normal_sequence_sets.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,248   copying build/lib/oncoref/plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,251   copying build/lib/oncoref/_evidence_resolution.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,253   copying build/lib/oncoref/cta_evidence_model.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,255   copying build/lib/oncoref/cancer_ontology.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,258   copying build/lib/oncoref/data_bundle.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,260   copying build/lib/oncoref/cta_selection.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,263   copying build/lib/oncoref/cta_normal_screen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,265   copying build/lib/oncoref/normal_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,267   copying build/lib/oncoref/cell_rna_policy.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,270   copying build/lib/oncoref/figure_style.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,272   copying build/lib/oncoref/human_cta_snapshot.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,275   copying build/lib/oncoref/figure_output.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,276   copying build/lib/oncoref/bgee_srp181218.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,278   copying build/lib/oncoref/target_sets.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,281   copying build/lib/oncoref/normal_cell_screen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,283   copying build/lib/oncoref/cta_research_policy.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,285   copying build/lib/oncoref/cli.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,288   copying build/lib/oncoref/normal_rna_review.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,290   copying build/lib/oncoref/drivers.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,292   copying build/lib/oncoref/reference_identity.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,294   copying build/lib/oncoref/proteoforms.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,296   copying build/lib/oncoref/cta_evidence_adapters.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,298   copying build/lib/oncoref/protein_equivalence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,300   copying build/lib/oncoref/barkbase.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,302   copying build/lib/oncoref/cta_continuous_screen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,305   copying build/lib/oncoref/canine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:10,309   creating build/bdist.linux-armv7l/wheel/oncoref/data
2026-10-28T05:39:10,310   copying build/lib/oncoref/data/cta-research-gene-sets.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,319   copying build/lib/oncoref/data/cancer-viral-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,321   copying build/lib/oncoref/data/ensembl-id-aliases.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,331   copying build/lib/oncoref/data/cta-donor-rna.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,333   copying build/lib/oncoref/data/cancer-code-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,335   copying build/lib/oncoref/data/cta-intake-identity-snapshot.json -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,337   copying build/lib/oncoref/data/driver-gene-evidence.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,343   copying build/lib/oncoref/data/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,347   copying build/lib/oncoref/data/cta-membership-gene-sets.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,392   copying build/lib/oncoref/data/rrna-and-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,395   copying build/lib/oncoref/data/cta-specificity-audit.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,397   copying build/lib/oncoref/data/cta-followup-notes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,399   copying build/lib/oncoref/data/cancer-type-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,401   copying build/lib/oncoref/data/cta-membership-evidence.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,404   copying build/lib/oncoref/data/cancer-lineage-group-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,406   copying build/lib/oncoref/data/ribosomal-protein-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,408   copying build/lib/oncoref/data/cancer-cohort-aggregates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,410   copying build/lib/oncoref/data/legacy-dataset-dispositions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,412   copying build/lib/oncoref/data/clean-tpm-biological-housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,414   copying build/lib/oncoref/data/cohort-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,416   copying build/lib/oncoref/data/cta-screening-review-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,418   copying build/lib/oncoref/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,436   copying build/lib/oncoref/data/extra-tx-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,438   copying build/lib/oncoref/data/normal-tissue-taxonomy.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,441   copying build/lib/oncoref/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,444   copying build/lib/oncoref/data/fusion-surrogate-expression.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,446   copying build/lib/oncoref/data/narrative-gene-sets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,448   copying build/lib/oncoref/data/rna-protein-hpa-prior-sources.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,449   copying build/lib/oncoref/data/cta-publication-membership.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,488   copying build/lib/oncoref/data/tissue-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,490   copying build/lib/oncoref/data/nuclear-retained-lncrnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,492   copying build/lib/oncoref/data/cancer-entity-driver-spectrum.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,494   copying build/lib/oncoref/data/expression-artifact-gene-universe-deltas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,502   copying build/lib/oncoref/data/cancer-apd1-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,505   copying build/lib/oncoref/data/cancer-who-soft-tissue-bone-audit.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,507   copying build/lib/oncoref/data/cancer-ici-source-locator-audit.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,513   copying build/lib/oncoref/data/cta-selection-human.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,532   copying build/lib/oncoref/data/cancer-lineage-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,534   copying build/lib/oncoref/data/cancer-fusions.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,537   copying build/lib/oncoref/data/hpa-cancer-sources.json -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,539   copying build/lib/oncoref/data/normal-cell-publication-evidence.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,542   copying build/lib/oncoref/data/ncbi-symbol-synonyms.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,550   copying build/lib/oncoref/data/cta-membership-source-roles.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,552   copying build/lib/oncoref/data/cta-membership-controls.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,554   copying build/lib/oncoref/data/fusion-expression-effects.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,557   copying build/lib/oncoref/data/sequence-gene-rna-reviews.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,562   copying build/lib/oncoref/data/external-ihc-evidence.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,571   copying build/lib/oncoref/data/cancer-normal-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,574   copying build/lib/oncoref/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,577   copying build/lib/oncoref/data/cta-selection.json -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,580   copying build/lib/oncoref/data/hemoglobin-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,582   copying build/lib/oncoref/data/cancer-response-signatures.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,584   copying build/lib/oncoref/data/rna-protein-calibration-sources.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,587   copying build/lib/oncoref/data/cancer-reference-expression-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,594   copying build/lib/oncoref/data/cta-candidate-references.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,595   copying build/lib/oncoref/data/mitochondrial-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,597   copying build/lib/oncoref/data/cancer-incidence-mortality.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,599   copying build/lib/oncoref/data/cta-research-clinical-evidence.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,601   copying build/lib/oncoref/data/cta-publication-sources.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,604   copying build/lib/oncoref/data/cancer-frameshift-burden.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,605   copying build/lib/oncoref/data/cta-policy-findings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,614   copying build/lib/oncoref/data/hpa-cancer-rna-cohorts.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,616   creating build/bdist.linux-armv7l/wheel/oncoref/data/species
2026-10-28T05:39:10,618   creating build/bdist.linux-armv7l/wheel/oncoref/data/species/dog
2026-10-28T05:39:10,619   copying build/lib/oncoref/data/species/dog/expression_sources.yaml -> build/bdist.linux-armv7l/wheel/./oncoref/data/species/dog
2026-10-28T05:39:10,621   copying build/lib/oncoref/data/species/dog/lineage_overlaps.json -> build/bdist.linux-armv7l/wheel/./oncoref/data/species/dog
2026-10-28T05:39:10,623   copying build/lib/oncoref/data/species/dog/pfizer-dog-protein-samples.json -> build/bdist.linux-armv7l/wheel/./oncoref/data/species/dog
2026-10-28T05:39:10,627   copying build/lib/oncoref/data/species/dog/bgee-srp009687-samples.json -> build/bdist.linux-armv7l/wheel/./oncoref/data/species/dog
2026-10-28T05:39:10,629   copying build/lib/oncoref/data/species/dog/bgee-srp181218-samples.json -> build/bdist.linux-armv7l/wheel/./oncoref/data/species/dog
2026-10-28T05:39:10,636   copying build/lib/oncoref/data/species/dog/assets.json -> build/bdist.linux-armv7l/wheel/./oncoref/data/species/dog
2026-10-28T05:39:10,638   copying build/lib/oncoref/data/species/dog/barkbase-samples.json -> build/bdist.linux-armv7l/wheel/./oncoref/data/species/dog
2026-10-28T05:39:10,644   copying build/lib/oncoref/data/species/dog/cta-evidence.json -> build/bdist.linux-armv7l/wheel/./oncoref/data/species/dog
2026-10-28T05:39:10,651   copying build/lib/oncoref/data/cancer-ici-response.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,654   copying build/lib/oncoref/data/hpa-cancer-crosswalk.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,656   copying build/lib/oncoref/data/cancer-fusion-citation-audit.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,659   copying build/lib/oncoref/data/cancer-type-registry.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,663   copying build/lib/oncoref/data/cta-membership-paper-receipts.json -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,666   copying build/lib/oncoref/data/cancer-tmb-source-audit.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,669   copying build/lib/oncoref/data/proteoform-collapse-overrides.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,671   copying build/lib/oncoref/data/housekeeping-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,673   copying build/lib/oncoref/data/normal-cell-sources.json -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,676   copying build/lib/oncoref/data/numt-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,678   copying build/lib/oncoref/data/therapy-benefit-toxicity-evidence.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,681   copying build/lib/oncoref/data/cancer-subtype-groupings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,682   copying build/lib/oncoref/data/cta-gene-publication-evidence.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,685   copying build/lib/oncoref/data/cta-screen-results.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,719   copying build/lib/oncoref/data/driver-variant-evidence.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,724   copying build/lib/oncoref/data/cta-warning-reviews.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,725   copying build/lib/oncoref/data/cta-antibody-adjudications.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,731   copying build/lib/oncoref/data/ribosomal-protein-pseudogenes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,734   copying build/lib/oncoref/data/ncbi-entrez-gene-mappings.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,751   copying build/lib/oncoref/data/source-matrices.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,753   copying build/lib/oncoref/data/proteoform-groups-genome.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,756   copying build/lib/oncoref/data/cta-reviewed-evidence.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,758   copying build/lib/oncoref/data/cancer-mismatch-repair-statuses.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,760   copying build/lib/oncoref/data/cta-intake-identity-reviews.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,762   copying build/lib/oncoref/data/cta-external-safety-reviews.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,764   copying build/lib/oncoref/data/rna-protein-calibration-samples.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,766   copying build/lib/oncoref/data/cancer-expression-source-candidates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,769   copying build/lib/oncoref/data/cta-donor-ihc.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,771   copying build/lib/oncoref/data/censored-gene-reference-tpm.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,776   copying build/lib/oncoref/data/proteoform-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,778   copying build/lib/oncoref/data/histone-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,781   copying build/lib/oncoref/data/cancer-key-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,786   copying build/lib/oncoref/data/degenerate-subtype-pairs.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,788   copying build/lib/oncoref/data/hpa-safety-tissue-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,791   copying build/lib/oncoref/data/rna-protein-hpa-priors.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,809   copying build/lib/oncoref/data/cancer-key-gene-citation-audit.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,814   copying build/lib/oncoref/data/cancer-reference-expression-availability.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,819   copying build/lib/oncoref/data/rare-cancer-fusion-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,822   copying build/lib/oncoref/data/clean-tpm-censored-genes.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,838   copying build/lib/oncoref/data/target-gene-sets.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,942   copying build/lib/oncoref/data/cancer-reference-sample-molecular-provenance.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,947   copying build/lib/oncoref/data/cancer-tmb.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,951   copying build/lib/oncoref/data/representative-source-adjudications.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,953   copying build/lib/oncoref/data/cta-clinical-targets.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,956   copying build/lib/oncoref/data/protein-annotation-sources.json -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:10,959   copying build/lib/oncoref/data/rna-protein-calibrations.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,108   copying build/lib/oncoref/data/family-burden-map.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,110   copying build/lib/oncoref/data/normal-tissue-mappings.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,116   copying build/lib/oncoref/data/cta-policy.json -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,118   copying build/lib/oncoref/data/cta-trial-evidence.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,120   copying build/lib/oncoref/data/cta-selection-sources.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,123   copying build/lib/oncoref/data/cdna-identical-gene-groups.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,125   copying build/lib/oncoref/data/canonical-gene-space.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,135   copying build/lib/oncoref/data/cta-ihc-unreliable.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,137   copying build/lib/oncoref/data/gse294016-sample-diagnoses.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,139   copying build/lib/oncoref/data/disease-state-rules.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,141   copying build/lib/oncoref/data/cancer-testis-antigens-extended.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,163   copying build/lib/oncoref/data/cta-quantitative-gene-sets.csv.gz -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,202   copying build/lib/oncoref/data/cancer-ici-response-estimates.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,210   copying build/lib/oncoref/data/small-noncoding-rnas.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,215   copying build/lib/oncoref/data/cta-followup-reviews.csv -> build/bdist.linux-armv7l/wheel/./oncoref/data
2026-10-28T05:39:11,221   copying build/lib/oncoref/expression_provenance_plots.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,224   copying build/lib/oncoref/reference_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,227   copying build/lib/oncoref/species.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,229   copying build/lib/oncoref/ici_response.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,232   copying build/lib/oncoref/sequence_groups.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,234   copying build/lib/oncoref/ihc_observations.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,236   copying build/lib/oncoref/expression_contract.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,239   copying build/lib/oncoref/fusions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,242   copying build/lib/oncoref/expression_registry.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,245   copying build/lib/oncoref/normalization.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,248   copying build/lib/oncoref/antigen_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,250   copying build/lib/oncoref/normal_cell_data.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,253   copying build/lib/oncoref/gene_matching.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,256   copying build/lib/oncoref/pfizer_canine_protein.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,258   copying build/lib/oncoref/representative_partitions.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,260   copying build/lib/oncoref/human_protein_atlas.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,263   copying build/lib/oncoref/human.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,265   copying build/lib/oncoref/species_antigens.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,268   copying build/lib/oncoref/tmb.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,270   copying build/lib/oncoref/species_assets.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,273   copying build/lib/oncoref/expression_engine.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,276   copying build/lib/oncoref/cta_evidence_schema.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,278   copying build/lib/oncoref/cta_sources.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,281   copying build/lib/oncoref/rna_protein.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,284   copying build/lib/oncoref/cancer_genes.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,287   copying build/lib/oncoref/gene_qc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,289   copying build/lib/oncoref/doga.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,292   copying build/lib/oncoref/cta_tissues.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,294   copying build/lib/oncoref/bgee_srp009687.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,296   copying build/lib/oncoref/hpa_cancer.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,299   copying build/lib/oncoref/gene_identity.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,302   copying build/lib/oncoref/cta_coverage.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,304   copying build/lib/oncoref/response_signatures.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,306   copying build/lib/oncoref/version.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,309   copying build/lib/oncoref/external_ihc.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,311   copying build/lib/oncoref/normal_tissue_gene_filters.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,314   copying build/lib/oncoref/gene_families.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,317   copying build/lib/oncoref/tumor_references.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,320   copying build/lib/oncoref/therapy_evidence.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,322   copying build/lib/oncoref/normal_expression_breadth.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,325   copying build/lib/oncoref/cohorts.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,327   copying build/lib/oncoref/cta_screen.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,329   copying build/lib/oncoref/cta_policy.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,332   copying build/lib/oncoref/cancer_types.py -> build/bdist.linux-armv7l/wheel/./oncoref
2026-10-28T05:39:11,336   running install_egg_info
2026-10-28T05:39:11,345   running egg_info
2026-10-28T05:39:11,351   writing oncoref.egg-info/PKG-INFO
2026-10-28T05:39:11,359   writing dependency_links to oncoref.egg-info/dependency_links.txt
2026-10-28T05:39:11,361   writing entry points to oncoref.egg-info/entry_points.txt
2026-10-28T05:39:11,364   writing requirements to oncoref.egg-info/requires.txt
2026-10-28T05:39:11,366   writing top-level names to oncoref.egg-info/top_level.txt
2026-10-28T05:39:11,401   reading manifest file 'oncoref.egg-info/SOURCES.txt'
2026-10-28T05:39:11,429   reading manifest template 'MANIFEST.in'
2026-10-28T05:39:11,529   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression'
2026-10-28T05:39:11,532   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-percentiles'
2026-10-28T05:39:11,535   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-representatives'
2026-10-28T05:39:11,538   warning: no previously-included files matching '*' found under directory 'oncoref/data/cancer-reference-expression-within-sample-top5'
2026-10-28T05:39:11,541   warning: no previously-included files found matching 'oncoref/data/pan-cancer-expression.csv'
2026-10-28T05:39:11,544   warning: no previously-included files found matching 'oncoref/data/hpa-cell-type-expression.csv'
2026-10-28T05:39:11,544   adding license file 'LICENSE'
2026-10-28T05:39:11,571   writing manifest file 'oncoref.egg-info/SOURCES.txt'
2026-10-28T05:39:11,573   Copying oncoref.egg-info to build/bdist.linux-armv7l/wheel/./oncoref-1.21.0-py3.11.egg-info
2026-10-28T05:39:11,585   running install_scripts
2026-10-28T05:39:11,598   creating build/bdist.linux-armv7l/wheel/oncoref-1.21.0.dist-info/WHEEL
2026-10-28T05:39:11,602   creating '/tmp/pip-wheel-lb1cvzy2/.tmp-_tqkxoix/oncoref-1.21.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-10-28T05:39:11,609   adding 'oncoref/__init__.py'
2026-10-28T05:39:11,611   adding 'oncoref/_downloads.py'
2026-10-28T05:39:11,613   adding 'oncoref/_evidence_resolution.py'
2026-10-28T05:39:11,614   adding 'oncoref/_reference_sources.py'
2026-10-28T05:39:11,616   adding 'oncoref/_table_io.py'
2026-10-28T05:39:11,618   adding 'oncoref/antigen_coverage.py'
2026-10-28T05:39:11,620   adding 'oncoref/apd1.py'
2026-10-28T05:39:11,622   adding 'oncoref/barkbase.py'
2026-10-28T05:39:11,623   adding 'oncoref/bgee_srp009687.py'
2026-10-28T05:39:11,625   adding 'oncoref/bgee_srp181218.py'
2026-10-28T05:39:11,627   adding 'oncoref/cancer_genes.py'
2026-10-28T05:39:11,629   adding 'oncoref/cancer_ontology.py'
2026-10-28T05:39:11,641   adding 'oncoref/cancer_types.py'
2026-10-28T05:39:11,644   adding 'oncoref/canine.py'
2026-10-28T05:39:11,646   adding 'oncoref/catalog.py'
2026-10-28T05:39:11,649   adding 'oncoref/cell_rna_policy.py'
2026-10-28T05:39:11,654   adding 'oncoref/cli.py'
2026-10-28T05:39:11,656   adding 'oncoref/cohorts.py'
2026-10-28T05:39:11,658   adding 'oncoref/compartment_rna_policy.py'
2026-10-28T05:39:11,663   adding 'oncoref/coverage.py'
2026-10-28T05:39:11,668   adding 'oncoref/cta.py'
2026-10-28T05:39:11,671   adding 'oncoref/cta_continuous_screen.py'
2026-10-28T05:39:11,673   adding 'oncoref/cta_coverage.py'
2026-10-28T05:39:11,678   adding 'oncoref/cta_curation_plots.py'
2026-10-28T05:39:11,679   adding 'oncoref/cta_evidence_adapters.py'
2026-10-28T05:39:11,682   adding 'oncoref/cta_evidence_model.py'
2026-10-28T05:39:11,684   adding 'oncoref/cta_evidence_schema.py'
2026-10-28T05:39:11,686   adding 'oncoref/cta_funnel.py'
2026-10-28T05:39:11,688   adding 'oncoref/cta_gate_audit.py'
2026-10-28T05:39:11,691   adding 'oncoref/cta_landscape.py'
2026-10-28T05:39:11,693   adding 'oncoref/cta_membership.py'
2026-10-28T05:39:11,696   adding 'oncoref/cta_normal_screen.py'
2026-10-28T05:39:11,698   adding 'oncoref/cta_peptides.py'
2026-10-28T05:39:11,700   adding 'oncoref/cta_policy.py'
2026-10-28T05:39:11,703   adding 'oncoref/cta_provenance.py'
2026-10-28T05:39:11,705   adding 'oncoref/cta_quantitative.py'
2026-10-28T05:39:11,709   adding 'oncoref/cta_regen.py'
2026-10-28T05:39:11,711   adding 'oncoref/cta_research_policy.py'
2026-10-28T05:39:11,716   adding 'oncoref/cta_review.py'
2026-10-28T05:39:11,719   adding 'oncoref/cta_screen.py'
2026-10-28T05:39:11,722   adding 'oncoref/cta_selection.py'
2026-10-28T05:39:11,725   adding 'oncoref/cta_sources.py'
2026-10-28T05:39:11,727   adding 'oncoref/cta_tissues.py'
2026-10-28T05:39:11,733   adding 'oncoref/data_bundle.py'
2026-10-28T05:39:11,737   adding 'oncoref/data_manifest.py'
2026-10-28T05:39:11,739   adding 'oncoref/doga.py'
2026-10-28T05:39:11,742   adding 'oncoref/drivers.py'
2026-10-28T05:39:11,773   adding 'oncoref/expression.py'
2026-10-28T05:39:11,800   adding 'oncoref/expression_builders.py'
2026-10-28T05:39:11,804   adding 'oncoref/expression_contract.py'
2026-10-28T05:39:11,809   adding 'oncoref/expression_engine.py'
2026-10-28T05:39:11,811   adding 'oncoref/expression_provenance_plots.py'
2026-10-28T05:39:11,814   adding 'oncoref/expression_registry.py'
2026-10-28T05:39:11,827   adding 'oncoref/expression_source_adapters.py'
2026-10-28T05:39:11,830   adding 'oncoref/external_ihc.py'
2026-10-28T05:39:11,832   adding 'oncoref/figure_output.py'
2026-10-28T05:39:11,835   adding 'oncoref/figure_style.py'
2026-10-28T05:39:11,838   adding 'oncoref/fusions.py'
2026-10-28T05:39:11,841   adding 'oncoref/gene_families.py'
2026-10-28T05:39:11,843   adding 'oncoref/gene_identity.py'
2026-10-28T05:39:11,846   adding 'oncoref/gene_ids.py'
2026-10-28T05:39:11,849   adding 'oncoref/gene_matching.py'
2026-10-28T05:39:11,851   adding 'oncoref/gene_qc.py'
2026-10-28T05:39:11,854   adding 'oncoref/genome.py'
2026-10-28T05:39:11,855   adding 'oncoref/gse304066.py'
2026-10-28T05:39:11,858   adding 'oncoref/hpa.py'
2026-10-28T05:39:11,861   adding 'oncoref/hpa_cancer.py'
2026-10-28T05:39:11,863   adding 'oncoref/human.py'
2026-10-28T05:39:11,865   adding 'oncoref/human_cta_snapshot.py'
2026-10-28T05:39:11,867   adding 'oncoref/human_protein_atlas.py'
2026-10-28T05:39:11,874   adding 'oncoref/ici.py'
2026-10-28T05:39:11,876   adding 'oncoref/ici_response.py'
2026-10-28T05:39:11,878   adding 'oncoref/ihc_observations.py'
2026-10-28T05:39:11,880   adding 'oncoref/incidence.py'
2026-10-28T05:39:11,882   adding 'oncoref/legacy.py'
2026-10-28T05:39:11,885   adding 'oncoref/load_dataset.py'
2026-10-28T05:39:11,886   adding 'oncoref/mouse.py'
2026-10-28T05:39:11,890   adding 'oncoref/normal_cell_data.py'
2026-10-28T05:39:11,892   adding 'oncoref/normal_cell_screen.py'
2026-10-28T05:39:11,895   adding 'oncoref/normal_expression_breadth.py'
2026-10-28T05:39:11,897   adding 'oncoref/normal_expression_categories.py'
2026-10-28T05:39:11,899   adding 'oncoref/normal_rna_review.py'
2026-10-28T05:39:11,901   adding 'oncoref/normal_sequence_sets.py'
2026-10-28T05:39:11,903   adding 'oncoref/normal_tissue_gene_filters.py'
2026-10-28T05:39:11,907   adding 'oncoref/normal_tissues.py'
2026-10-28T05:39:11,913   adding 'oncoref/normalization.py'
2026-10-28T05:39:11,916   adding 'oncoref/peptides.py'
2026-10-28T05:39:11,918   adding 'oncoref/pfizer_canine_protein.py'
2026-10-28T05:39:11,919   adding 'oncoref/pfizer_canine_rna.py'
2026-10-28T05:39:11,929   adding 'oncoref/plots.py'
2026-10-28T05:39:11,932   adding 'oncoref/protein_annotations.py'
2026-10-28T05:39:11,934   adding 'oncoref/protein_equivalence.py'
2026-10-28T05:39:11,937   adding 'oncoref/proteoforms.py'
2026-10-28T05:39:11,940   adding 'oncoref/reference_data.py'
2026-10-28T05:39:11,943   adding 'oncoref/reference_identity.py'
2026-10-28T05:39:11,945   adding 'oncoref/representative_partitions.py'
2026-10-28T05:39:11,947   adding 'oncoref/response_signatures.py'
2026-10-28T05:39:11,950   adding 'oncoref/rna_protein.py'
2026-10-28T05:39:11,952   adding 'oncoref/samples.py'
2026-10-28T05:39:11,954   adding 'oncoref/sequence_groups.py'
2026-10-28T05:39:11,956   adding 'oncoref/source_matrices.py'
2026-10-28T05:39:11,958   adding 'oncoref/species.py'
2026-10-28T05:39:11,962   adding 'oncoref/species_antigens.py'
2026-10-28T05:39:11,964   adding 'oncoref/species_assets.py'
2026-10-28T05:39:11,966   adding 'oncoref/species_expression.py'
2026-10-28T05:39:11,969   adding 'oncoref/target_sets.py'
2026-10-28T05:39:11,970   adding 'oncoref/therapy_evidence.py'
2026-10-28T05:39:11,973   adding 'oncoref/tmb.py'
2026-10-28T05:39:11,975   adding 'oncoref/tumor_references.py'
2026-10-28T05:39:11,977   adding 'oncoref/version.py'
2026-10-28T05:39:11,982   adding 'oncoref/data/cancer-apd1-response.csv'
2026-10-28T05:39:11,983   adding 'oncoref/data/cancer-code-burden-map.csv'
2026-10-28T05:39:11,984   adding 'oncoref/data/cancer-cohort-aggregates.csv'
2026-10-28T05:39:11,989   adding 'oncoref/data/cancer-driver-genes.csv'
2026-10-28T05:39:11,991   adding 'oncoref/data/cancer-driver-variants.csv'
2026-10-28T05:39:11,993   adding 'oncoref/data/cancer-entity-driver-spectrum.csv'
2026-10-28T05:39:11,997   adding 'oncoref/data/cancer-expression-source-candidates.csv'
2026-10-28T05:39:11,998   adding 'oncoref/data/cancer-frameshift-burden.csv'
2026-10-28T05:39:12,002   adding 'oncoref/data/cancer-fusion-citation-audit.csv'
2026-10-28T05:39:12,006   adding 'oncoref/data/cancer-fusions.csv'
2026-10-28T05:39:12,030   adding 'oncoref/data/cancer-ici-response-estimates.csv'
2026-10-28T05:39:12,036   adding 'oncoref/data/cancer-ici-response.csv'
2026-10-28T05:39:12,044   adding 'oncoref/data/cancer-ici-source-locator-audit.csv'
2026-10-28T05:39:12,046   adding 'oncoref/data/cancer-incidence-mortality.csv'
2026-10-28T05:39:12,061   adding 'oncoref/data/cancer-key-gene-citation-audit.csv'
2026-10-28T05:39:12,075   adding 'oncoref/data/cancer-key-genes.csv'
2026-10-28T05:39:12,077   adding 'oncoref/data/cancer-lineage-group-overrides.csv'
2026-10-28T05:39:12,078   adding 'oncoref/data/cancer-lineage-groups.csv'
2026-10-28T05:39:12,080   adding 'oncoref/data/cancer-mismatch-repair-statuses.csv'
2026-10-28T05:39:12,081   adding 'oncoref/data/cancer-normal-tissue-map.csv'
2026-10-28T05:39:12,089   adding 'oncoref/data/cancer-reference-expression-availability.csv'
2026-10-28T05:39:12,120   adding 'oncoref/data/cancer-reference-expression-samples.csv.gz'
2026-10-28T05:39:12,126   adding 'oncoref/data/cancer-reference-sample-molecular-provenance.csv'
2026-10-28T05:39:12,127   adding 'oncoref/data/cancer-response-signatures.csv'
2026-10-28T05:39:12,128   adding 'oncoref/data/cancer-subtype-groupings.csv'
2026-10-28T05:39:12,203   adding 'oncoref/data/cancer-testis-antigens-extended.csv'
2026-10-28T05:39:12,285   adding 'oncoref/data/cancer-testis-antigens.csv'
2026-10-28T05:39:12,297   adding 'oncoref/data/cancer-tmb-source-audit.csv'
2026-10-28T05:39:12,301   adding 'oncoref/data/cancer-tmb.csv'
2026-10-28T05:39:12,304   adding 'oncoref/data/cancer-type-genes.csv'
2026-10-28T05:39:12,310   adding 'oncoref/data/cancer-type-registry.csv'
2026-10-28T05:39:12,311   adding 'oncoref/data/cancer-viral-antigens.csv'
2026-10-28T05:39:12,314   adding 'oncoref/data/cancer-who-soft-tissue-bone-audit.csv'
2026-10-28T05:39:12,366   adding 'oncoref/data/canonical-gene-space.csv.gz'
2026-10-28T05:39:12,371   adding 'oncoref/data/cdna-identical-gene-groups.csv'
2026-10-28T05:39:12,381   adding 'oncoref/data/censored-gene-reference-tpm.csv'
2026-10-28T05:39:12,383   adding 'oncoref/data/clean-tpm-biological-housekeeping-genes.csv'
2026-10-28T05:39:12,419   adding 'oncoref/data/clean-tpm-censored-genes.csv'
2026-10-28T05:39:12,427   adding 'oncoref/data/cohort-registry.csv'
2026-10-28T05:39:12,439   adding 'oncoref/data/cta-antibody-adjudications.csv'
2026-10-28T05:39:12,442   adding 'oncoref/data/cta-candidate-references.csv'
2026-10-28T05:39:12,443   adding 'oncoref/data/cta-clinical-targets.csv'
2026-10-28T05:39:12,445   adding 'oncoref/data/cta-donor-ihc.csv'
2026-10-28T05:39:12,446   adding 'oncoref/data/cta-donor-rna.csv'
2026-10-28T05:39:12,447   adding 'oncoref/data/cta-external-safety-reviews.csv'
2026-10-28T05:39:12,448   adding 'oncoref/data/cta-followup-notes.csv'
2026-10-28T05:39:12,460   adding 'oncoref/data/cta-followup-reviews.csv'
2026-10-28T05:39:12,464   adding 'oncoref/data/cta-gene-publication-evidence.csv'
2026-10-28T05:39:12,466   adding 'oncoref/data/cta-ihc-unreliable.csv'
2026-10-28T05:39:12,467   adding 'oncoref/data/cta-intake-identity-reviews.csv'
2026-10-28T05:39:12,468   adding 'oncoref/data/cta-intake-identity-snapshot.json'
2026-10-28T05:39:12,469   adding 'oncoref/data/cta-membership-controls.csv'
2026-10-28T05:39:12,471   adding 'oncoref/data/cta-membership-evidence.csv'
2026-10-28T05:39:12,741   adding 'oncoref/data/cta-membership-gene-sets.csv.gz'
2026-10-28T05:39:12,758   adding 'oncoref/data/cta-membership-paper-receipts.json'
2026-10-28T05:39:12,759   adding 'oncoref/data/cta-membership-source-roles.csv'
2026-10-28T05:39:12,771   adding 'oncoref/data/cta-policy-findings.csv'
2026-10-28T05:39:12,775   adding 'oncoref/data/cta-policy.json'
2026-10-28T05:39:12,874   adding 'oncoref/data/cta-publication-membership.csv'
2026-10-28T05:39:12,892   adding 'oncoref/data/cta-publication-sources.csv'
2026-10-28T05:39:13,157   adding 'oncoref/data/cta-quantitative-gene-sets.csv.gz'
2026-10-28T05:39:13,174   adding 'oncoref/data/cta-research-clinical-evidence.csv'
2026-10-28T05:39:13,215   adding 'oncoref/data/cta-research-gene-sets.csv.gz'
2026-10-28T05:39:13,218   adding 'oncoref/data/cta-reviewed-evidence.csv'
2026-10-28T05:39:13,325   adding 'oncoref/data/cta-screen-results.csv'
2026-10-28T05:39:13,339   adding 'oncoref/data/cta-screening-review-overrides.csv'
2026-10-28T05:39:13,455   adding 'oncoref/data/cta-selection-human.csv.gz'
2026-10-28T05:39:13,464   adding 'oncoref/data/cta-selection-sources.csv'
2026-10-28T05:39:13,465   adding 'oncoref/data/cta-selection.json'
2026-10-28T05:39:13,467   adding 'oncoref/data/cta-specificity-audit.csv'
2026-10-28T05:39:13,468   adding 'oncoref/data/cta-trial-evidence.csv'
2026-10-28T05:39:13,470   adding 'oncoref/data/cta-warning-reviews.csv'
2026-10-28T05:39:13,471   adding 'oncoref/data/degenerate-subtype-pairs.csv'
2026-10-28T05:39:13,473   adding 'oncoref/data/disease-state-rules.csv'
2026-10-28T05:39:13,482   adding 'oncoref/data/driver-gene-evidence.csv'
2026-10-28T05:39:13,489   adding 'oncoref/data/driver-variant-evidence.csv'
2026-10-28T05:39:13,517   adding 'oncoref/data/ensembl-id-aliases.csv'
2026-10-28T05:39:13,535   adding 'oncoref/data/expression-artifact-gene-universe-deltas.csv'
2026-10-28T05:39:13,546   adding 'oncoref/data/expression_sources.yaml'
2026-10-28T05:39:13,576   adding 'oncoref/data/external-ihc-evidence.csv.gz'
2026-10-28T05:39:13,579   adding 'oncoref/data/extra-tx-mappings.csv'
2026-10-28T05:39:13,580   adding 'oncoref/data/family-burden-map.csv'
2026-10-28T05:39:13,582   adding 'oncoref/data/fusion-expression-effects.csv'
2026-10-28T05:39:13,583   adding 'oncoref/data/fusion-surrogate-expression.csv'
2026-10-28T05:39:13,585   adding 'oncoref/data/gse294016-sample-diagnoses.csv'
2026-10-28T05:39:13,586   adding 'oncoref/data/hemoglobin-genes.csv'
2026-10-28T05:39:13,587   adding 'oncoref/data/histone-genes.csv'
2026-10-28T05:39:13,589   adding 'oncoref/data/housekeeping-genes.csv'
2026-10-28T05:39:13,590   adding 'oncoref/data/hpa-cancer-crosswalk.csv'
2026-10-28T05:39:13,592   adding 'oncoref/data/hpa-cancer-rna-cohorts.csv'
2026-10-28T05:39:13,593   adding 'oncoref/data/hpa-cancer-sources.json'
2026-10-28T05:39:13,595   adding 'oncoref/data/hpa-safety-tissue-map.csv'
2026-10-28T05:39:13,596   adding 'oncoref/data/legacy-dataset-dispositions.csv'
2026-10-28T05:39:13,598   adding 'oncoref/data/mitochondrial-genes.csv'
2026-10-28T05:39:13,599   adding 'oncoref/data/narrative-gene-sets.csv'
2026-10-28T05:39:13,701   adding 'oncoref/data/ncbi-entrez-gene-mappings.csv.gz'
2026-10-28T05:39:13,747   adding 'oncoref/data/ncbi-symbol-synonyms.csv.gz'
2026-10-28T05:39:13,751   adding 'oncoref/data/normal-cell-publication-evidence.csv'
2026-10-28T05:39:13,753   adding 'oncoref/data/normal-cell-sources.json'
2026-10-28T05:39:13,762   adding 'oncoref/data/normal-tissue-mappings.csv'
2026-10-28T05:39:13,770   adding 'oncoref/data/normal-tissue-taxonomy.yaml'
2026-10-28T05:39:13,771   adding 'oncoref/data/nuclear-retained-lncrnas.csv'
2026-10-28T05:39:13,773   adding 'oncoref/data/numt-pseudogenes.csv'
2026-10-28T05:39:13,774   adding 'oncoref/data/protein-annotation-sources.json'
2026-10-28T05:39:13,776   adding 'oncoref/data/proteoform-collapse-overrides.csv'
2026-10-28T05:39:13,778   adding 'oncoref/data/proteoform-groups-genome.csv'
2026-10-28T05:39:13,780   adding 'oncoref/data/proteoform-groups.csv'
2026-10-28T05:39:13,782   adding 'oncoref/data/rare-cancer-fusion-rules.csv'
2026-10-28T05:39:13,783   adding 'oncoref/data/representative-source-adjudications.csv'
2026-10-28T05:39:13,784   adding 'oncoref/data/ribosomal-protein-genes.csv'
2026-10-28T05:39:13,790   adding 'oncoref/data/ribosomal-protein-pseudogenes.csv'
2026-10-28T05:39:13,792   adding 'oncoref/data/rna-protein-calibration-samples.csv.gz'
2026-10-28T05:39:13,794   adding 'oncoref/data/rna-protein-calibration-sources.csv'
2026-10-28T05:39:14,954   adding 'oncoref/data/rna-protein-calibrations.csv.gz'
2026-10-28T05:39:15,016   adding 'oncoref/data/rna-protein-hpa-prior-sources.csv'
2026-10-28T05:39:15,105   adding 'oncoref/data/rna-protein-hpa-priors.csv.gz'
2026-10-28T05:39:15,112   adding 'oncoref/data/rrna-and-pseudogenes.csv'
2026-10-28T05:39:15,124   adding 'oncoref/data/sequence-gene-rna-reviews.csv.gz'
2026-10-28T05:39:15,144   adding 'oncoref/data/small-noncoding-rnas.csv'
2026-10-28T05:39:15,146   adding 'oncoref/data/source-matrices.csv'
2026-10-28T05:39:15,651   adding 'oncoref/data/target-gene-sets.csv.gz'
2026-10-28T05:39:15,682   adding 'oncoref/data/therapy-benefit-toxicity-evidence.csv'
2026-10-28T05:39:15,684   adding 'oncoref/data/tissue-burden-map.csv'
2026-10-28T05:39:15,686   adding 'oncoref/data/species/dog/assets.json'
2026-10-28T05:39:15,692   adding 'oncoref/data/species/dog/barkbase-samples.json'
2026-10-28T05:39:15,695   adding 'oncoref/data/species/dog/bgee-srp009687-samples.json'
2026-10-28T05:39:15,701   adding 'oncoref/data/species/dog/bgee-srp181218-samples.json'
2026-10-28T05:39:15,710   adding 'oncoref/data/species/dog/cta-evidence.json'
2026-10-28T05:39:15,714   adding 'oncoref/data/species/dog/expression_sources.yaml'
2026-10-28T05:39:15,715   adding 'oncoref/data/species/dog/lineage_overlaps.json'
2026-10-28T05:39:15,718   adding 'oncoref/data/species/dog/pfizer-dog-protein-samples.json'
2026-10-28T05:39:15,721   adding 'oncoref-1.21.0.dist-info/licenses/LICENSE'
2026-10-28T05:39:15,724   adding 'oncoref-1.21.0.dist-info/METADATA'
2026-10-28T05:39:15,725   adding 'oncoref-1.21.0.dist-info/WHEEL'
2026-10-28T05:39:15,726   adding 'oncoref-1.21.0.dist-info/entry_points.txt'
2026-10-28T05:39:15,727   adding 'oncoref-1.21.0.dist-info/top_level.txt'
2026-10-28T05:39:15,731   adding 'oncoref-1.21.0.dist-info/RECORD'
2026-10-28T05:39:16,018   removing build/bdist.linux-armv7l/wheel
2026-10-28T05:39:16,180   Building wheel for oncoref (pyproject.toml): finished with status 'done'
2026-10-28T05:39:16,719   Created wheel for oncoref: filename=oncoref-1.21.0-py3-none-any.whl size=26210714 sha256=396d71fb7a74fe5588a13c359cafd704f700b974751a83ef0d238a8c72ba88fd
2026-10-28T05:39:16,720   Stored in directory: /tmp/pip-ephem-wheel-cache-8a18nyd1/wheels/56/18/40/de43ef5de93fea96e2167d598801c2c23d39928eca769cbfad
2026-10-28T05:39:16,749 Successfully built oncoref
2026-10-28T05:39:17,490 Removed build tracker: '/tmp/pip-build-tracker-wmkvz8y0'